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protfunc

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205 MB

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3 contributors

History: 81 commits

Sbhat2026's picture

Claude Sonnet 4.6

fix: _ESM_DIM global scope fix for model info endpoint

fee2326 about 20 hours ago

scripts
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
static
fix: version display v5.0 badge and footer about 21 hours ago
.DS_Store

10.2 kB
Initial clean deployment 3 months ago
.gitattributes

84 Bytes
fix: re-save mlb pickle with protocol 4 for Python 3.11 compatibility about 2 months ago
.gitignore

429 Bytes
deploy mammal_enriched v3.2: insect=0.9542 mammal=0.5715 CAFA5-evaluated 27 days ago
Backup_Server.py

5.65 kB
Initial clean deployment 3 months ago
CHECKLIST.md

9.65 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
Dockerfile

776 Bytes
fix uvicorn module name 3 months ago
Dockerfile.cloudrun

977 Bytes
v4: creator credit, stage canvases, no-cache fix 6 days ago
General_Pipeline.ipynb

415 kB
Initial commit: functional predictor with tooltip UI 3 months ago
Mammal_generalization.py

31.3 kB
fix: split evidence code suffix in UniProt fetch and replace \d with [0-9] in GO regex about 2 months ago
README.md

412 Bytes
Initial clean deployment 3 months ago
RunModel.command

94 Bytes
Initial clean deployment 3 months ago
TRAINING_PLAN.md

5.16 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
Taxon_Generalization_Starter.ipynb

7.12 kB
Initial commit: functional predictor with tooltip UI 3 months ago
base_res.pth
Detected Pickle imports (3)
- "torch._utils._rebuild_tensor_v2",
- "collections.OrderedDict",
- "torch.FloatStorage"
What is a pickle import?
43 MB
xet

Initial clean deployment 3 months ago
base_res_export.pth
Detected Pickle imports (3)
- "torch._utils._rebuild_tensor_v2",
- "collections.OrderedDict",
- "torch.FloatStorage"
What is a pickle import?
43 MB
xet

Initial clean deployment 3 months ago
baseline_state_dict.pth
Detected Pickle imports (3)
- "torch.FloatStorage",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
38.8 MB
xet

Initial clean deployment 3 months ago
cloudbuild.yaml

238 Bytes
v4: creator credit, stage canvases, no-cache fix 6 days ago
colabfold_information.ipynb

37.3 kB
Initial commit: functional predictor with tooltip UI 3 months ago
convert_model.py

932 Bytes
Initial clean deployment 3 months ago
go-basic.obo

31.9 MB
xet

fix: add OBO ontology via Git LFS about 2 months ago
go_map.json

411 kB
Initial clean deployment 3 months ago
go_names.json

310 kB
add canonical MF-only GO names 2 months ago
mammal_enriched_thresholds.json

714 kB
deploy mammal_enriched v3.2: insect=0.9542 mammal=0.5715 CAFA5-evaluated 27 days ago
mlb_public_v1.pkl
Detected Pickle imports (4)
- "sklearn.preprocessing._label.MultiLabelBinarizer",
- "numpy.ndarray",
- "numpy.dtype",
- "numpy._core.multiarray._reconstruct"
How to fix it?
212 kB
xet

fix: re-save mlb pickle with protocol 4 for Python 3.11 compatibility about 2 months ago
per_label_thresholds.json

107 kB
deploy precision+IC thresholds (F-β=0.5 calibrated on protfunc_v3 val set) 30 days ago
platt_mammal.json

22.4 kB
v4: creator credit, stage canvases, no-cache fix 6 days ago
requirements.txt

169 Bytes
v4: creator credit, stage canvases, no-cache fix 6 days ago
server.py

85.5 kB
fix: _ESM_DIM global scope fix for model info endpoint about 20 hours ago
supp_res2.pth
Detected Pickle imports (3)
- "collections.OrderedDict",
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
44.6 MB
xet

Initial clean deployment 3 months ago
taxon_probe.json

30.9 kB
v4: creator credit, stage canvases, no-cache fix 6 days ago
temperature_best.json

264 Bytes
v4: creator credit, stage canvases, no-cache fix 6 days ago
unified_35M_v1_thresholds.json

171 kB
v4: creator credit, stage canvases, no-cache fix 6 days ago
unified_v1_recalibrated.json

721 kB
v4: creator credit, stage canvases, no-cache fix 6 days ago