fix: _ESM_DIM global scope fix for model info endpoint

fix: version display v5.0 badge and footer

deploy: Add GO term explanation panel, CAFA-6 predict script, and OBO def parsing

deploy: bug fix, unified metrics, home.js + home.css

v4: creator credit, stage canvases, no-cache fix

UI v2: PRISM-style landing page + light theme redesign

feat: explanation fields in /api/go_terms response

feat: add /api/go_terms lightweight endpoint for pipeline integration

feat: unified_35M_v1 — 35M ESM + GOA-enriched training, auto ESM-dim detection

deploy: feat: taxon auto-detection, UniProt annotation comparison, Platt+temp loading

deploy: fix: tighten mammal false positive rate (threshold floor + dynamic cap)

deploy: feat: feature-level importance viz with 3D structure coloring

ui: card subtabs + mobile polish

v4.2: precision-tuned mammal thresholds (T=3.85), fix threshold mismatch

Sort by confidence+alpha; fix 3D structure via 3Dmol.js pLDDT coloring

Fix prediction error: seqMap destructuring bug

ProtFunc v4.1: gradient saliency on ESM-2, 3Dmol.js AF viewer, UniProt accession input

deploy: unified_v1 v4.0 ins=0.9555 mam=0.2908

fix: 8124-class MLB + out_dim detection — mammal_enriched.pth now loads correctly, insect recall 95%

feat: taxon routing + organism selector (insect/mammal/auto)

refactor: most-specific MF first, implied ancestors collapsed, remove depth badges

fix: showMed/showLow undefined JS error

fix: threshold dict format, temperature calibration at inference

perf: remove 1.1 GB CSV from HF download list

fix: remove dead code + dead var in propagate_and_filter

fix+enhance: device global, GO hierarchy depth/names, depth badge UI

fix+enhance: device global, GO depth/names, replaced_by remapping

deploy mammal_enriched v3.2: insect=0.9542 mammal=0.5715 CAFA5-evaluated

perf: ESM embedding cache + 1500aa limit, add research scripts

Merge remote-tracking branch 'origin/main'

add .gitignore to exclude artifacts and local-only dirs

fix: catastrophic forgetting + eval_fmax bug in mammal fine-tuning

ui: replace hide/show medium-low buttons with collapsible lower-confidence section

deploy precision+IC thresholds (F-β=0.5 calibrated on protfunc_v3 val set)

Fix compute_dynamic_cap: lower rel_gap threshold and abs_cap

fix: skip corrupted checkpoints instead of degrading silently

fix: resolve embedding dimensions issue for supp_res2 predictions

Update static/interface.html: v3-fixed model priority, generalization API + UI

Update server.py: v3-fixed model priority, generalization API + UI

fix: revert to improved model, add top-30 prediction cap

feat: structure viewer, implied badge, DNA/non-letter validation, batch fix, dynamic version badge

feat: non-AA validation, DNA detection, /api/structure endpoint

feat: v3 model support, GO hierarchy, supplemented features, updated UI

Update server.py

Update static/interface.html

Update requirements.txt

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