deploy precision+IC thresholds (F-β=0.5 calibrated on protfunc_v3 val set)
Browse filesReplaces F-max tuned thresholds (mean 0.535, 217 labels at 0.1) with
precision-biased thresholds (mean 0.735) + IC-scaled ceilings for top-25
most common MF terms.
Impact on 2000-protein test subset vs protfunc_v3:
current: precision 0.002, recall 0.989, F1 0.004, mean 1448 preds/protein
new: precision 0.053, recall 0.118, F1 0.073, mean 6.7 preds/protein
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>