Spaces:

Sbhat2026
/

protfunc

Running

App Files Files Community

protfunc / scripts

257 kB

Ctrl+K

Ctrl+K

3 contributors

History: 4 commits

Sbhat2026's picture

perf: ESM embedding cache + 1500aa limit, add research scripts

7f7a890 28 days ago

build_mammal_dataset.py

26.2 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
eval_checkpoint.py

4.74 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
eval_generalization.py

19.5 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
finetune_mammal_enriched.py

23.6 kB
fix: catastrophic forgetting + eval_fmax bug in mammal fine-tuning 28 days ago
graph_hpo_sequence.py

10.5 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
hpo.py

24 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
post_train_pipeline.py

22.2 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
post_training.sh

4.24 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
prep_taxon.py

22.9 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
recalibrate_thresholds_f1.py

18.1 kB
fix: catastrophic forgetting + eval_fmax bug in mammal fine-tuning 28 days ago
run_after_hpo.sh

2.08 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
run_full_pipeline.sh

6.03 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
setup_mlb.py

273 Bytes
feat: v3 model support, GO hierarchy, supplemented features, updated UI about 1 month ago
threshold_comparison.py

27.7 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago
train_v3_fixed.py

44.6 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 28 days ago