repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 355 | 9 | pytest.raises | test_numpy_ufuncs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | TypeError) | modified | e05c9a5c6af0a5e55307fefa54f73eba3eab8d64b9e000173df7459f94fbaaf9 | pytest.raises|test_numpy_ufuncs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_car... | TypeError) | 353 | 9 |
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 426 | 4 | assert_* | test_complex_methods | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | np.full((2,), 2 + 4j)) | modified | 8571e2dc2b7a092b9d8c48314ccb617ca22780a901ac721a0076e41d91ea4082 | assert_*|test_complex_methods|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_carte... | np.full((2,), 2 + 4j)) | 424 | 4 |
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 213 | 8 | assert_* | test_boundary_interpolation_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | bndry_val) | added | b26f103abfa34a85e4c469e743ee4c2272200fe383d9505d79c23e2c7e749a0a | assert_*|test_boundary_interpolation_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule... | null | null | null |
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 255 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | expected) | modified | fc9edcba14d62b19926f3624c8c3a741c23759edd9d0b64abbb552fe656ee6db | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | expected) | 254 | 8 |
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 267 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | res.data) | modified | 0dcc4d9097a6c65c7675626ea604b0afc3fd10c8a33ee5b8acdc3ac3ae703bc1 | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | res.data) | 266 | 8 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 83 | 8 | assert_* | test_shapes_nfields | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | example_grid.shape) | modified | 13cd567eeb79d018e0b38e9459c64176de33f4c8dadfd535797d5f689cb2070e | assert_*|test_shapes_nfields|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGri... | example_grid.shape) | 83 | 8 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 205 | 13 | pytest.raises | test_data_managment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | RuntimeError) | modified | 83b59bed8e23472b3008ca9b9c5fcacb63e7df88e23a73c6f67492ee38c647fb | pytest.raises|test_data_managment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( Cartesi... | RuntimeError) | 205 | 13 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 481 | 4 | assert_* | test_dot_product | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | expected) | modified | c6bf43a5881efb53fe49a5625ff674608950fd5c91b6d79d3d60590019b51f53 | assert_*|test_dot_product|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid, ... | expected) | 481 | 4 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 98 | 4 | assert_* | test_laplacian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | -s.data) | modified | 1177c7da2e60ef915e2267e06eb3e66dcd28c920b8e0e2df956605c510f5c4b0 | assert_*|test_laplacian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_g... | -s.data) | 98 | 4 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 426 | 4 | assert_* | test_complex_methods | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | np.full((2,), 2 + 4j)) | modified | e27952055eb93e057843aa958fd7d8e6d19b4e907daf5909d9c5a36e0fd504a1 | assert_*|test_complex_methods|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_carte... | np.full((2,), 2 + 4j)) | 426 | 4 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 255 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | expected) | modified | d290e0c2259932e23d089be26c55e8bcce726df3d8fa70d22c6fe39731e2eaa5 | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | expected) | 255 | 8 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 260 | 12 | assert | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | isinstance(s, ScalarField) | modified | 78621d9884ae2596c990593a92313807fde99514332b83b8b2d4b067d82f5d6b | assert|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vector... | isinstance(s, ScalarField) | 260 | 12 |
zwicker-group/py-pde | train | 195 | 3df53d203ce277fbc6ab0f65afae677532d1e449 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 267 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | res.data) | modified | dd8976af9573143a8cf3e9ea8daddf18d6d8402f6049808d42a68b3dfe1bf9c1 | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | res.data) | 267 | 8 |
zwicker-group/py-pde | train | 196 | a5a3d613b03f9cec38a03bd2771bca44098eeeac | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 74 | 16 | assert_* | test_storage_persistence | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | np.arange(15)) | added | 8295092dd47513d47239da6e01a1e9409f8cfb522b77f1683b2592c0a593a783 | assert_*|test_storage_persistence|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [Tru... | null | null | null |
zwicker-group/py-pde | train | 196 | a5a3d613b03f9cec38a03bd2771bca44098eeeac | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 100 | 4 | assert | test_simulation_persistence | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | grid_res | added | e3f8f95479245863d604967c52b58662ae3b7e864e144b7d734a228dd6279159 | assert|test_simulation_persistence|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [Tr... | null | null | null |
zwicker-group/py-pde | train | 196 | a5a3d613b03f9cec38a03bd2771bca44098eeeac | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 144 | 4 | assert | test_appending | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | "writing" | added | b9f1cd75a307cb7db05c6ea4709ffae226a863d9ec26e073c795f198831da36d | assert|test_appending|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [True, False]) d... | null | null | null |
zwicker-group/py-pde | train | 196 | a5a3d613b03f9cec38a03bd2771bca44098eeeac | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 173 | 4 | assert | test_keep_opened | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | storage2.times | added | 34f10a3f612baff1edf166933a420d11ed0705b82cbb44d0aa828d17da2cab78 | assert|test_keep_opened|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [True, False])... | null | null | null |
zwicker-group/py-pde | train | 197 | b3b7fbf2f8da06d36be9f775e1a0405806faacc1 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 205 | 13 | pytest.raises | test_data_managment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | RuntimeError) | modified | 77f44aa2411a11d76534b6de53778585b73755a7cd07a59bdbf0586dae2f1689 | pytest.raises|test_data_managment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( Cartesi... | RuntimeError) | 205 | 13 |
zwicker-group/py-pde | train | 197 | b3b7fbf2f8da06d36be9f775e1a0405806faacc1 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 329 | 4 | assert | test_get_cartesian_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | grid.volume | modified | 9fd2806c68b2b7f7f33a93d3c41cb2c667ba1abc0c99e32e79e5855be018eae5 | assert|test_get_cartesian_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianG... | grid.volume | 329 | 4 |
zwicker-group/py-pde | train | 197 | b3b7fbf2f8da06d36be9f775e1a0405806faacc1 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 485 | 4 | assert_* | test_dot_product | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | expected) | modified | 0262d3e976da18eb922680afd412f5027f51a27cf4f49b604abf9ecbc38a1e47 | assert_*|test_dot_product|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid, ... | expected) | 485 | 4 |
zwicker-group/py-pde | train | 197 | b3b7fbf2f8da06d36be9f775e1a0405806faacc1 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 504 | 4 | assert | test_get_field_class_by_rank | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | ScalarField | modified | 68619b887a9b07f905ab1ffd7efb86eaa95458324556299137888a7b1dae5ee0 | assert|test_get_field_class_by_rank|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( Carte... | ScalarField | 504 | 4 |
zwicker-group/py-pde | train | 198 | f7fcb60fe64ebb9093a832c07fab7a80dcfef678 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 34 | 4 | assert | test_tensors_basic | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | isinstance(trace, ScalarField) | modified | 7ae6ae44cf1215d2ba750666cfca490cd3a62d68e48855a02a5064b5e82d21c6 | assert|test_tensors_basic|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Cartesian... | isinstance(trace, ScalarField) | 34 | 4 |
zwicker-group/py-pde | train | 198 | f7fcb60fe64ebb9093a832c07fab7a80dcfef678 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 125 | 4 | assert_* | test_insert_tensor | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | a / example_grid.cell_volumes[c]) | added | fd9aa422f827d9577d96e74b53a392494207d7647a6c82f09530cb453c28ee38 | assert_*|test_insert_tensor|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Cartesi... | null | null | null |
zwicker-group/py-pde | train | 198 | f7fcb60fe64ebb9093a832c07fab7a80dcfef678 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 180 | 8 | assert_* | test_tensor_invariants | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | f_rot.to_scalar(f"invariant{i}").data) | added | fd657ec38e120e8d5512d2682ab79c87d396109b77222ee3304f81ffe6a875ef | assert_*|test_tensor_invariants|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Car... | null | null | null |
zwicker-group/py-pde | train | 198 | f7fcb60fe64ebb9093a832c07fab7a80dcfef678 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 202 | 12 | assert | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | isinstance(t, Tensor2Field) | added | 2aef2a61a1cf3efed997e6ae71b6e123f659d790d52a90435c6983fc3518179c | assert|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, PolarSymGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Cartesi... | null | null | null |
zwicker-group/py-pde | train | 199 | 6c7b58d4ba224e24c444d904eeb8807a26d291de | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 21 | 4 | assert | test_tensors_basic | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | t1[0, 0] | modified | d78b807788dff3abae9e0acb4cccf8d1cea57d2798313ed38d0e407e50a93419 | assert|test_tensors_basic|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Cartesian... | t1[0, 0] | 21 | 4 |
zwicker-group/py-pde | train | 199 | 6c7b58d4ba224e24c444d904eeb8807a26d291de | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 80 | 4 | assert_* | test_tensors_transpose | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | broadcast([[0, 2], [1, 3]])) | modified | 61d121bd8309bb27532712330e48458b726a34ab2c4bdb13a15223ad02b96b5b | assert_*|test_tensors_transpose|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Car... | broadcast([[0, 2], [1, 3]])) | 80 | 4 |
zwicker-group/py-pde | train | 199 | 6c7b58d4ba224e24c444d904eeb8807a26d291de | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 113 | 4 | assert_* | test_tensor_symmetrize | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | ts.data) | modified | 0264568de527789898042a17998213207e0d9b9283614dd725b89e16d7e26858 | assert_*|test_tensor_symmetrize|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Car... | ts.data) | 113 | 4 |
zwicker-group/py-pde | train | 199 | 6c7b58d4ba224e24c444d904eeb8807a26d291de | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 136 | 4 | assert_* | test_insert_tensor | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.... | a / example_grid.cell_volumes[c]) | modified | 7f53b998755402ba36395ce29212ddec02da52ac86cc01bd67e20ff726508a4b | assert_*|test_insert_tensor|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = Cartesi... | a / example_grid.cell_volumes[c]) | 136 | 4 |
zwicker-group/py-pde | train | 200 | df6f94a749005f3b6122540f1220636f681fae77 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 54 | 8 | assert | test_solvers_simple_ode | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
@pytest.mark.parametrize("scheme", ["euler", "runge-kutta"])
@pytest.mark.parame... | 20 / dt | added | 5ec67b5f7dc20bcbfcf948a83db3e45d7b726913c8ef8ed75eeb70fc0d1de8c0 | assert|test_solvers_simple_ode|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver @pytest.mark.parametrize("scheme", ["euler", "runge-ku... | null | null | null |
zwicker-group/py-pde | train | 200 | df6f94a749005f3b6122540f1220636f681fae77 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 101 | 4 | assert | test_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
@pytest.mark.parametrize("scheme", ["euler", "runge-kutta"])
@pytest.mark.parame... | solver2.info["stochastic"] | added | a118551bf50926a9b551cd3bdc5c2b4c0a96cc0ca018f88f0b4171e4fee42b71 | assert|test_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver @pytest.mark.parametrize("scheme", ["euler", "runge-ku... | null | null | null |
zwicker-group/py-pde | train | 200 | df6f94a749005f3b6122540f1220636f681fae77 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 115 | 4 | assert | test_stochastic_adaptive_solver | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
@pytest.mark.parametrize("scheme", ["euler", "runge-kutta"])
@pytest.mark.parame... | caplog.text | added | cc6219a056f4b7c022669f301cd15fec9ba132a874911e4a39b87fc41425d141 | assert|test_stochastic_adaptive_solver|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver @pytest.mark.parametrize("scheme", ["euler", "... | null | null | null |
zwicker-group/py-pde | train | 200 | df6f94a749005f3b6122540f1220636f681fae77 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 125 | 9 | pytest.raises | test_unsupported_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
@pytest.mark.parametrize("scheme", ["euler", "runge-kutta"])
@pytest.mark.parame... | RuntimeError) | added | 74b36bd2d2bc1b8f79e57f932d42f25b35b36760eccc57b9de422fd81d83a177 | pytest.raises|test_unsupported_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver @pytest.mark.parametrize("scheme", ... | null | null | null |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/grids/tests/test_spherical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical_grids.py | 179 | 4 | assert_* | test_spherical_to_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarSymGrid, SphericalSymGrid])
def test_spherical_bas... | pf_cart2.data) | modified | 1083fdef05bf9293f6cd96a6b27960b76aa42c83d52a9ca1f371e7b1c4aff1f8 | assert_*|test_spherical_to_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarSymGrid, Spherica... | pf_cart2.data) | 179 | 4 |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/grids/tests/test_spherical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical_grids.py | 189 | 4 | assert | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarSymGrid, SphericalSymGrid])
def test_spherical_bas... | b_inner | modified | b48a7a933816807e30f443a55b1f01645fb842728c129ea98c60ed955266fbc1 | assert|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarSymGrid, Spher... | b_inner | 189 | 4 |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/grids/tests/test_spherical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical_grids.py | 195 | 4 | assert | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarSymGrid, SphericalSymGrid])
def test_spherical_bas... | b_inner | modified | 44255456bcd78b22be46cfccd3452057b8e157bc91ef7678070ee2cdf8b4265c | assert|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarSymGrid, Spher... | b_inner | 195 | 4 |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 69 | 4 | assert | test_pde_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | not eq.complex_valued | added | e1c68e589ec7e655ec90b30a2348ae9ebcb3514cae47c8bf671f6910c5a264e2 | assert|test_pde_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yield grids... | null | null | null |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 272 | 9 | pytest.raises | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | Exception) | added | f799fed0950dddadfcb4ba783eaa90b8059b5cc5ae42fe96d23ad8090951299b | pytest.raises|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yiel... | null | null | null |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 289 | 4 | assert_* | test_pde_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | res_b.data) | added | e1b1980a0e05e266ca187aac8d086266ad08f6ec94619718863497b410cff11a | assert_*|test_pde_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yield grids.... | null | null | null |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 90 | 4 | assert | test_stochastic_adaptive_solver | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
@pytest.mark.parametrize("scheme", ["euler", "runge-kutta"])
@pytest.mark.parame... | caplog.text | added | 4408cbce7e1968b3aa0c6ff44c18605103bc9d9e4e67e9e257a3bc983a3201a2 | assert|test_stochastic_adaptive_solver|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver @pytest.mark.parametrize("scheme", ["euler", "... | null | null | null |
zwicker-group/py-pde | train | 201 | 00990f762409e60b093d2e4fc2a4827a43226429 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 100 | 9 | pytest.raises | test_unsupported_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
@pytest.mark.parametrize("scheme", ["euler", "runge-kutta"])
@pytest.mark.parame... | RuntimeError) | added | 26da5e2507bd7e82aea90578d669c1bc0e40a212784d3ef68c77e94ff0255215 | pytest.raises|test_unsupported_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver @pytest.mark.parametrize("scheme", ... | null | null | null |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 206 | 4 | assert | test_mixed_condition | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_name... | pytest.approx(-1) | modified | 4b9803d59621c6f7701553e6837c13c514836ac3c52f0f4306165f765c2d8f67 | assert|test_mixed_condition|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_conditio... | pytest.approx(-1) | 205 | 4 |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 252 | 4 | assert | test_inhomogeneous_bcs_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_name... | pytest.approx(0) | modified | 290ebed16566d6320fa1ccd722499d5289981a6969f124eb5663e282ec5683e9 | assert|test_inhomogeneous_bcs_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_con... | pytest.approx(0) | 251 | 4 |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | pde/pdes/tests/test_diffusion_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion_pdes.py | 15 | 4 | assert | test_diffusion_single | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single():
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()
assert isinstance(str(... | isinstance(repr(eq), str) | modified | 6178b179125fb5ee723ebfa4e988ad1e524e403b62ef7048f4407c19c51c974a | assert|test_diffusion_single|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid def test_diffusion_single(): """test some methods of the simple diffusion model""" eq = DiffusionPDE() assert is... | isinstance(repr(eq), str) | 14 | 4 |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 43 | 9 | pytest.raises | test_pde_wrong_input | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some tes... | RuntimeError) | modified | 3f4e1c5094660171f2b360ce09dfd6b2cf5c01ce27bfc552d5867f864c75086c | pytest.raises|test_pde_wrong_input|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError def iter_gr... | RuntimeError) | 42 | 9 |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 93 | 4 | assert_* | test_pde_2scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some tes... | res_b.data) | modified | 7b91a4923fcebf880a19fcb0e261b3f1c9fa28834f170c83aaf77c28d3bf8072 | assert_*|test_pde_2scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError def iter_grids(): ""... | res_b.data) | 92 | 4 |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | tests/performance_boundaries.py | train | zwicker-group/py-pde:tests/performance_boundaries.py | 53 | 16 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of different boundary conditions
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import numpy as np
from pde import ScalarField, UnitGrid
from pde.tools... | result) | added | 33790516a85881ae41dd29e201f28af964548ae734184bcb6261d468008b1cf7 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of different boundary conditions """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) import numpy as np from pde import ScalarField, UnitGrid from pde... | null | null | null | |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 213 | 20 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import ... | expected.data) | modified | 7934fc87da649cec444fe15d704e71b3d08be1b6e78e612cadf3d2f62c5a46a8 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) ... | expected.data) | 213 | 20 | |
zwicker-group/py-pde | train | 203 | a34784b68177a4ed519de0163b861623cb4601dc | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 234 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import ... | expected.data) | modified | 90d9923659c132b542898b5bd57c44e777e5bb1db234c994737fa050ea9f26e7 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) ... | expected.data) | 234 | 12 | |
zwicker-group/py-pde | train | 205 | be31e6b7e6dce54cd5990b0215c391576c2d9cc6 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 316 | 8 | assert_* | test_make_derivative | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | res.data) | modified | 52e8f97c62f4cb17269fd597ce2006779d611e773c9b0e0e950b803f8b194c56 | assert_*|test_make_derivative|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_rando... | res.data) | 316 | 8 |
zwicker-group/py-pde | train | 205 | be31e6b7e6dce54cd5990b0215c391576c2d9cc6 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 337 | 4 | assert_* | test_make_derivative2 | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | res.data) | added | 8edac048c03f376aefde3c8cb1c3853747d520800c380df91da0b9dcc63e0733 | assert_*|test_make_derivative2|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_rand... | null | null | null |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 135 | 12 | assert_* | test_poisson_solver_spherical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | d.data) | modified | dfc01ce3fc23d9054d871526a6135fb745279caa346462bfe269f2c9ed9e0e04 | assert_*|test_poisson_solver_spherical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical gri... | d.data) | 132 | 12 |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 365 | 9 | pytest.raises | test_setting_domain_rect | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""return a random Ca... | RuntimeError) | modified | 1bd26d1e5aabfae4b8775764f02648ff04fcaba5e49fc4ad60c82617334b050f | pytest.raises|test_setting_domain_rect|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2, periodi... | RuntimeError) | 365 | 9 |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | pde/grids/tests/test_cylindrical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical_grids.py | 96 | 4 | assert | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalSymGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
def test_cylindrical_grid():
"""test simple cylindrical grid"""
for periodic in [True, False]:
... | b_inner | modified | 1f33cced8cc195668428e7acd1208534f9d245f9bb2caefd1bb682404d873108 | assert|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalSymGrid, ScalarField from pde.grids.boundaries.local import NeumannBC def test_cylindrical_grid(): """test simple cylindrical grid""" for per... | b_inner | 96 | 4 |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 133 | 8 | assert | test_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | grid.operators | modified | 67b2ac36d3803670975d3643f7f8e4b43ec4a335fab0a0fce38e91e737d4d6bf | assert|test_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipUnlessModule def ite... | grid.operators | 133 | 8 |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | pde/grids/tests/test_spherical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical_grids.py | 72 | 4 | assert_* | test_polar_annulus | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarSymGrid, SphericalSymGrid])
def test_spherical_bas... | np.linspace(2.125, 3.875, 8)) | modified | 859f264247531565593018d55e4a2dfeae6c11037f75873009dc910fe67fc06c | assert_*|test_polar_annulus|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarSymGrid, SphericalSymGrid]... | np.linspace(2.125, 3.875, 8)) | 72 | 4 |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | pde/tests/test_integration.py | train | zwicker-group/py-pde:pde/tests/test_integration.py | 45 | 4 | assert_* | test_inhomogeneous_bcs | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
def test_writing_to_storage(t... | expect.data) | modified | 99e6b55e0a1145f033d1c39986e7f2b72cadc013fcb5734b0b0bb678d77c9761 | assert_*|test_inhomogeneous_bcs|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") de... | expect.data) | 43 | 4 |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 77 | 12 | assert | test_noise_scaling | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import fftpack, stats
from pde import CartesianGrid, UnitGrid
from pde.tools.spectral import make_colored_noise
def spectral_density(data, dx=1.0):
"""calculate the power spectral density of a field
... | pytest.approx(0) | modified | 691bff4e8efa0bf2c47c7fe95a4bc47520dbb11582c367d5b791ec9483ebd829 | assert|test_noise_scaling|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import fftpack, stats from pde import CartesianGrid, UnitGrid from pde.tools.spectral import make_colored_noise def spectral_density(data, dx=1.0): """calculate the power spectral densit... | pytest.approx(0) | 77 | 12 |
zwicker-group/py-pde | train | 206 | 54ebd8e1302a99d3e3591f079ef341428eda6323 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 213 | 20 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import ... | expected.data) | modified | f7ef7fcda5e02c1751bf6d4b0b769c5f9bfc9841888692a56c03b3adc76422b9 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) ... | expected.data) | 213 | 20 | |
zwicker-group/py-pde | train | 207 | a27695ecf2908084227db88bc40ad90641a3d6bc | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 332 | 4 | assert_* | test_pde_integral | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some tes... | -field.integral) | added | 7e7478f2780f774c0c67af76ba30418af8aa6b7d96c0984df6def06213ce04ff | assert_*|test_pde_integral|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError def iter_grids(): "... | null | null | null |
zwicker-group/py-pde | train | 207 | a27695ecf2908084227db88bc40ad90641a3d6bc | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 337 | 8 | assert | test_pde_integral | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some tes... | pytest.approx(0, abs=1e-2) | added | 21ed8a6c95ff0be647863b0b456a610246689126aea7165bf624afa657e2572d | assert|test_pde_integral|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError def iter_grids(): """... | null | null | null |
zwicker-group/py-pde | train | 207 | a27695ecf2908084227db88bc40ad90641a3d6bc | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 337 | 31 | pytest.approx | test_pde_integral | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some tes... | 0, abs=1e-2) | added | 4d1ed63c3091f9e7d995c0bfc585ba4f42f42fbad36f3b31fce86a863cb98780 | pytest.approx|test_pde_integral|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError def iter_grids... | null | null | null |
zwicker-group/py-pde | train | 207 | a27695ecf2908084227db88bc40ad90641a3d6bc | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 338 | 8 | assert_* | test_pde_integral | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some tes... | field.data - field.magnitude) | added | ea1bb4ab7be604dfb8059600760770621cb5bf663fd823895d94cafb118c8ddf | assert_*|test_pde_integral|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError def iter_grids(): "... | null | null | null |
zwicker-group/py-pde | train | 208 | d497670a0bba3e672b4b0560414f55a3f94c359c | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 201 | 4 | assert | test_write_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | "reading" | added | caf4927d6b6759333c994f432abb4f07c2c3fdb6b536bf136953e933ec0e4a92 | assert|test_write_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [True, False])... | null | null | null |
zwicker-group/py-pde | train | 208 | d497670a0bba3e672b4b0560414f55a3f94c359c | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 215 | 4 | assert_* | test_write_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | np.arange(3)) | added | a6e8ad958d322921173c142a09afc7a9bccc8194e3ae3fc3d6b80d1c3c6d8b3f | assert_*|test_write_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [True, False... | null | null | null |
zwicker-group/py-pde | train | 208 | d497670a0bba3e672b4b0560414f55a3f94c359c | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 216 | 4 | assert | test_write_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | np.dtype(dtype) | added | 1359ca815bd2886ecdaaa2d82592c979ec560118630e7079bdd84e3c126144ea | assert|test_write_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [True, False])... | null | null | null |
zwicker-group/py-pde | train | 208 | d497670a0bba3e672b4b0560414f55a3f94c359c | train | pde/storage/tests/test_file_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_file_storages.py | 222 | 4 | assert | test_write_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | np.dtype(dtype) | added | 699aaf83a03b2dc6efc42fbc8caaff1549e0e8beaa3f21790e259f3279523505 | assert|test_write_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", [True, False])... | null | null | null |
zwicker-group/py-pde | train | 208 | d497670a0bba3e672b4b0560414f55a3f94c359c | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 255 | 8 | assert_* | test_storage_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | [0, 1]) | added | a4d1033836f16b2f2cf72bd39e13f51aa6fef88fec27c8e881dc9d66259cee82 | assert_*|test_storage_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.m... | null | null | null |
zwicker-group/py-pde | train | 208 | d497670a0bba3e672b4b0560414f55a3f94c359c | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 256 | 8 | assert_* | test_storage_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | field.data) | added | ccf8bc73fc4546ba9c3fa14ad97c59d75b27f1376c8b688b9f1cb4b9cd296902 | assert_*|test_storage_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.m... | null | null | null |
zwicker-group/py-pde | train | 208 | d497670a0bba3e672b4b0560414f55a3f94c359c | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 257 | 8 | assert_* | test_storage_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | field.data) | added | d107dbb3727210ed949bb31b732a12187e8ad765fb334f3e523620023ec87bdc | assert_*|test_storage_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.m... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 420 | 4 | assert | test_random_colored | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | np.allclose(f.average, 0) | added | fc7fbda05a8a7208aa38b4314e7135013b355a1d660d3347975565ec24e0381e | assert|test_random_colored|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid,... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 473 | 8 | assert_* | test_smoothing | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | expected) | added | 048cbcc9ce10bcae6b5aa62efd0fb6fde4c980f85d07bda61336593f6c551412 | assert_*|test_smoothing|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid, Cy... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 494 | 4 | assert_* | test_vector_from_scalars | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | [[[0, 1]], [[2, 3]]]) | added | 3a1fe929664c75d226584049b9d8ea5b355b1ccdb7978dbcee944e0ad066d9af | assert_*|test_vector_from_scalars|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( Cartesi... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 531 | 4 | assert | test_complex_operator | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | np.iscomplexobj(c) | added | eaee3aec8b8fefc898fe4d1baafc477de327780c875f28a68e08489bed414726 | assert|test_complex_operator|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGri... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 232 | 4 | assert_* | test_to_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | np.abs(sf.data)) | added | d9fe4d4ab6677acd9268ecf3eac5163b02d78ac01c5c0ead62d9d7c280375c16 | assert_*|test_to_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_g... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 282 | 9 | pytest.raises | test_slice_positions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | ValueError) | added | f56a4cc4acb21a8bd864ea2cbd2933042239e8739771ddd370cc30deb575f225 | pytest.raises|test_slice_positions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 338 | 8 | assert_* | test_boundary_interpolation_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | bndry_val) | added | 72b587711218964a5458d63ed3ab32863b99e3a657255d72f2c258a2751dba0f | assert_*|test_boundary_interpolation_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.... | null | null | null |
zwicker-group/py-pde | train | 209 | 01c6b0b5efdc594178098617e5e42ef11deacf57 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 454 | 4 | assert | test_interpolation_after_free | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | pytest.approx(2.3) | added | e92035a2ae545b13d1270f50902eaf1dca10cd3b36b8fc147a6636c48e1eec3b | assert|test_interpolation_after_free|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.tes... | null | null | null |
zwicker-group/py-pde | train | 210 | a8f6d08c0ec175c739a4e55a65a410cd7aa90060 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 31 | 8 | assert | test_interpolation_singular | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.cartesian import CartesianGridBase
from pde... | pytest.approx(1) | modified | cf353476f4d84b025fc0fe713f02182308780b93b9580d95e8820a8a82ba14cf | assert|test_interpolation_singular|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.cartesian i... | pytest.approx(1) | 30 | 8 |
zwicker-group/py-pde | train | 210 | a8f6d08c0ec175c739a4e55a65a410cd7aa90060 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 112 | 4 | assert_* | test_gradient | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.cartesian import CartesianGridBase
from pde... | np.cos(y)) | modified | 599b1537fdd40d608ffee3cec970799b63dcd21d4d697e7c32f67b1ee98c7862 | assert_*|test_gradient|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.cartesian import Cartes... | np.cos(y)) | 111 | 4 |
zwicker-group/py-pde | train | 210 | a8f6d08c0ec175c739a4e55a65a410cd7aa90060 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 412 | 4 | assert | test_complex_dtype | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.cartesian import CartesianGridBase
from pde... | pytest.approx(1 + 1j) | modified | 161b237032ad6b8d8b178ba30cec186540ff9654b86369c484d55b053f387520 | assert|test_complex_dtype|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.cartesian import Car... | pytest.approx(1 + 1j) | 411 | 4 |
zwicker-group/py-pde | train | 210 | a8f6d08c0ec175c739a4e55a65a410cd7aa90060 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 465 | 4 | assert | test_corner_interpolation | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.cartesian import CartesianGridBase
from pde... | pytest.approx(0.0) | modified | d2cc29e21c530c6e9fa95e46c4c4d2d6d9e9e55877b3e270b193502a566eeffa | assert|test_corner_interpolation|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.cartesian imp... | pytest.approx(0.0) | 464 | 4 |
zwicker-group/py-pde | train | 211 | 0c78c17e89507279f7e37250c1b353e8701856c6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 192 | 4 | assert | test_synonyms | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | not e.depends_on("arbitrary") | added | 93b428e31666eae96ac3f72e31ce21d0f635c75a14de2679a0c6217aef1fe8f2 | assert|test_synonyms|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test parse_number f... | null | null | null |
zwicker-group/py-pde | train | 211 | 0c78c17e89507279f7e37250c1b353e8701856c6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 257 | 4 | assert | test_expression_user_funcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | expr.constant | added | 60ef8510aceff33d04930212e87fd6853bfbac8c7c7d0f7e058443e64d8b3298 | assert|test_expression_user_funcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test p... | null | null | null |
zwicker-group/py-pde | train | 211 | 0c78c17e89507279f7e37250c1b353e8701856c6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 280 | 4 | assert | test_expression_special | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | not expr.constant | modified | 61e28b338d80a4c5c2c1079805b3957b687b20a1eb9f375a4b7c9dd590254006 | assert|test_expression_special|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test pars... | 1 | 277 | 4 |
zwicker-group/py-pde | train | 211 | 0c78c17e89507279f7e37250c1b353e8701856c6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 295 | 4 | assert | test_expression_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | not expr.depends_on("a") | modified | 7fb1361c1469af1f0180cac44f5741eb4d358b3df98eec32f9fd7650bf6ece4c | assert|test_expression_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test parse... | 1 | 292 | 4 |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 199 | 9 | pytest.raises | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
from .fixtures import iter_grids
@pytest.mark.parametr... | ValueError) | added | d0a4a4bd78a24cdc5a0663dc7782c2341fcfa78a8c2fade4753004640138ff2b | pytest.raises|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule from .fixtures import iter_... | null | null | null |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 264 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | res.data) | modified | 0d3e34d3d12b039747cae581712b6e295a528e2bfbc62a8f05df296ebce9d4a0 | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | res.data) | 267 | 8 |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 175 | 4 | assert | test_vector_gradient | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | (ndim, ndim) + bcs.grid.shape | modified | 64c927d235d2d9f2d09e9199eb85e6c07d49e3ec40cba21a2b595921fb6c84f9 | assert|test_vector_gradient|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_random_... | (ndim, ndim) + bcs.grid.shape | 175 | 4 |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 287 | 8 | assert | test_unit_rect_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""return a random Ca... | pytest.approx(volume) | added | 582bb61cd1de4c18720c4ca01903e93849b97692471b891607ea948ced23816f | assert|test_unit_rect_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2, periodic=True): """... | null | null | null |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 100 | 18 | pytest.approx | test_integration | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | grid.integrate(arr)) | added | b46d0d79cfdcfe24d8722a76352ee55dcc4adb6427fa8fe2b7e352a6864e21a0 | pytest.approx|test_integration|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipUnlessModul... | null | null | null |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | pde/grids/tests/test_spherical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical_grids.py | 94 | 4 | assert_* | test_polar_to_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarSymGrid, SphericalSymGrid])
def test_spherical_bas... | pf_cart2.data) | added | 45a375a549c280643db5cc626dbe34588ab621d863897da4476526393e998e59 | assert_*|test_polar_to_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarSymGrid, SphericalSym... | null | null | null |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 51 | 8 | assert | test_const | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | isinstance(str(g), str) | modified | 9c154ccee5c07061c1be577c39655c5ba9c60f2ef32ed40e3c2c027100add2f0 | assert|test_const|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test parse_number func... | isinstance(str(g), str) | 51 | 8 |
zwicker-group/py-pde | train | 212 | f5949f53e9f3e17521e2d33c4d15701e418b7a80 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 234 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import ... | expected.data) | modified | 166ea0ec79955adc752686767f658864bd7515d28cf55b986a037641f2dd225d | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) ... | expected.data) | 234 | 12 | |
zwicker-group/py-pde | train | 213 | 728b4ea47ce2ec65a38a79680629f5d3c27c95af | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 92 | 4 | assert | test_collections_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.fields.tests.fixtures import iter_grids
from pde.tools.misc import skipUnlessModule
@pytes... | fc2[0].data | modified | e59fefb0fdbddf8d5f8ffac0f0e173b7d5a9f090aebadfe59365c6c11ebeaf73 | assert|test_collections_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.fields.tests.fixtures import iter_grids from pde.tools.misc impor... | fc2[0].data | 93 | 4 |
zwicker-group/py-pde | train | 213 | 728b4ea47ce2ec65a38a79680629f5d3c27c95af | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 236 | 4 | assert | test_collection_1_field | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.fields.tests.fixtures import iter_grids
from pde.tools.misc import skipUnlessModule
@pytes... | ["a"] | modified | a9cf9711a7ea1b46e640502e3f92c6e00f4a0a4692b5649fc3f41d28c4218239 | assert|test_collection_1_field|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.fields.tests.fixtures import iter_grids from pde.tools.misc imp... | ["a"] | 237 | 4 |
zwicker-group/py-pde | train | 213 | 728b4ea47ce2ec65a38a79680629f5d3c27c95af | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 391 | 37 | pytest.approx | test_random_normal | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.fields.tests.fixtures import iter_grids
from pde.grids... | s, rel=0.1, abs=0.1) | modified | c3e04b2d04f8fcffd71df8e3a912836ae9121bb7b4e571141fd8fd257ae36d9c | pytest.approx|test_random_normal|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.fields.tests.fixtures i... | s, rel=0.1, abs=0.1) | 392 | 37 |
zwicker-group/py-pde | train | 213 | 728b4ea47ce2ec65a38a79680629f5d3c27c95af | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 226 | 4 | assert_* | test_from_image | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.fields.tests.fixtures import iter_grids
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.... | img_data_gray.T[:, ::-1]) | modified | 0f14cdd8c4c66bed5dbeaac880fb105f8dee90bf62ff0883abaae6127a12b7ae | assert_*|test_from_image|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.fields.tests.fixtures import iter_grids from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid... | img_data_gray.T[:, ::-1]) | 227 | 4 |
zwicker-group/py-pde | train | 213 | 728b4ea47ce2ec65a38a79680629f5d3c27c95af | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 138 | 4 | assert_* | test_insert_tensor | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
from pde.fields.tests.fixtures import iter_grids
def test_tensors_basic():
"""test some tensor c... | a / grid.cell_volumes[c]) | modified | 07415489aa5fae4b004c1f75311972337ed1c7d5b3ff82ea60eb8fd71887824f | assert_*|test_insert_tensor|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase from pde.fields.tests.fixtures import iter_grids def test_tensors_basic(): "... | a / grid.cell_volumes[c]) | 139 | 4 |
zwicker-group/py-pde | train | 213 | 728b4ea47ce2ec65a38a79680629f5d3c27c95af | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 223 | 4 | assert_* | test_from_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
from pde.fields.tests.fixtures import iter_grids
def test_tensors_basic():
"""test some tensor c... | xs * ys) | modified | 9e6b51cbd3b7145b0e64ff89480244f97e0a783f6435259801881de7269fe1e9 | assert_*|test_from_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase from pde.fields.tests.fixtures import iter_grids def test_tensors_basic()... | xs * ys) | 224 | 4 |
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