repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 45 | 4 | assert | test_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import DiffusionPDE, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
def test_compare_explicit():
"""test explicit solvers"""
grid = UnitGrid([16, 16])
field = ScalarField.r... | solver2.info["stochastic"] | modified | 3bdddc70a85beba28fad40057daad9844d1c3b757a1465a73d09f5b772e6fd0c | assert|test_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import DiffusionPDE, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver def test_compare_explicit(): """test explicit solvers""" grid = UnitGrid([16, 16]) field ... | solver2.info["stochastic"] | 45 | 4 |
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/tools/tests/test_math.py | train | zwicker-group/py-pde:pde/tools/tests/test_math.py | 23 | 4 | assert_* | test_SmoothData1D | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde.tools.math import SmoothData1D
def test_SmoothData1D():
"""test smoothing"""
x = np.random.uniform(0, 1, 128)
xs = np.linspace(0, 1, 16)[1:-1]
s = SmoothData1D(x, np.ones_like(x))
np.testing.assert_allc... | np.sin(xs)) | modified | 6cc89f7deda1540b2414e6319f7b5c77bef6cb316e13f66224f5041b521df9f1 | assert_*|test_SmoothData1D|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde.tools.math import SmoothData1D def test_SmoothData1D(): """test smoothing""" x = np.random.uniform(0, 1, 128) xs = np.linspace(0, 1, 16)[1:-1] s = SmoothData1D(x, np.ones_like(x)) np.testing.assert_all... | np.sin(xs)) | 23 | 4 |
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 204 | 4 | assert | test_consistency_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
from unittest import mock
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc impo... | con.info["t_end"] | modified | 11facc1cf52f08c1cf8db3887c3ae1c11edaa55170f6ffca5440e42a601c1fdb | assert|test_consistency_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle from unittest import mock import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, Diffusio... | con.info["t_end"] | 204 | 4 |
zwicker-group/py-pde | train | 177 | c27547e3c3561712c12121d4ecf53a736fe73862 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 373 | 8 | assert_* | test_random_rng | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGrid,
PolarSy... | f2.data) | added | ee9729ef845cadd6a3ab69aaa66cb4defd9e21c118cf913c291b25544f175c0a | assert_*|test_random_rng|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import ( CartesianGrid, CylindricalSymGr... | null | null | null |
zwicker-group/py-pde | train | 177 | c27547e3c3561712c12121d4ecf53a736fe73862 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 389 | 16 | assert_* | test_fluctuations | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGrid,
PolarSy... | expect) | added | 8067ca5e4250af98492d16f97628d68391e9127472386a58ac3196bb65bc15ab | assert_*|test_fluctuations|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import ( CartesianGrid, CylindricalSym... | null | null | null |
zwicker-group/py-pde | train | 177 | c27547e3c3561712c12121d4ecf53a736fe73862 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 453 | 4 | assert_* | test_dot_product | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGrid,
PolarSy... | expected) | added | a495abb065a9689f12c27a10a877a34c14a050371c728112e8b28014fdc1705c | assert_*|test_dot_product|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import ( CartesianGrid, CylindricalSymG... | null | null | null |
zwicker-group/py-pde | train | 177 | c27547e3c3561712c12121d4ecf53a736fe73862 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 469 | 4 | assert | test_complex_operator | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGrid,
PolarSy... | c.is_complex | added | bf664a159be4939637af666cc82c355b8fc76db18f64cfe4d6810d432a222db9 | assert|test_complex_operator|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import ( CartesianGrid, CylindricalS... | null | null | null |
zwicker-group/py-pde | train | 179 | 656cc5c0c5db60c3247c542af1409e72e95df777 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 62 | 4 | assert | test_pde_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | eq.explicit_time_dependence | modified | 2e698f7d402423f72dbb9b5ce5b7319813dd72cf69a845b8f64b26341176a070 | assert|test_pde_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yield grids... | eq.explicit_time_dependence | 60 | 4 |
zwicker-group/py-pde | train | 179 | 656cc5c0c5db60c3247c542af1409e72e95df777 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 145 | 4 | assert_* | test_custom_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | res.data) | modified | c1855bb150e06321a7c3b44098c50d9647c4d5530536539c1a21539f88553e27 | assert_*|test_custom_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yie... | res.data) | 143 | 4 |
zwicker-group/py-pde | train | 179 | 656cc5c0c5db60c3247c542af1409e72e95df777 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 197 | 4 | assert_* | test_pde_user_funcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | field.gradient("natural").data[0]) | modified | 2af23f0bc39b5ef961782cebdea027027a858c59a281ae917aa15aec56781915 | assert_*|test_pde_user_funcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yield... | field.gradient("natural").data[0]) | 195 | 4 |
zwicker-group/py-pde | train | 179 | 656cc5c0c5db60c3247c542af1409e72e95df777 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 272 | 4 | assert | test_pde_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | not eq.complex_valued | modified | dfb7fc54e40d995c74a9dc0f6d363631d52dee3a75acc4592fb211dc882f5e3e | assert|test_pde_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yield grids.Un... | not eq.complex_valued | 270 | 4 |
zwicker-group/py-pde | train | 180 | 2bf70d1032088914e106004176cf7f12f5185cf3 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 121 | 4 | assert | test_compare_swift_hohenberg | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | eq2.complex_valued | modified | 7b66f9fa111af13ee0486643351fd360787b8386733dfc1b9925eb7ba9f80bae | assert|test_compare_swift_hohenberg|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""... | eq2.complex_valued | 119 | 4 |
zwicker-group/py-pde | train | 180 | 2bf70d1032088914e106004176cf7f12f5185cf3 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 137 | 9 | pytest.raises | test_custom_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | NameError) | modified | 75b0c4b29a42bfca8c6cffdcd25cff8ad18b862d9d8981cc417e3f01d7dc7f44 | pytest.raises|test_custom_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""... | NameError) | 135 | 9 |
zwicker-group/py-pde | train | 180 | 2bf70d1032088914e106004176cf7f12f5185cf3 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 207 | 4 | assert | test_pde_complex | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | not eq.explicit_time_dependence | modified | 7a8b97b87755bf0514a031cd7b8e7c2d761f2ad3cf40758d1f3e2b165b867bd6 | assert|test_pde_complex|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yield grid... | not eq.explicit_time_dependence | 205 | 4 |
zwicker-group/py-pde | train | 180 | 2bf70d1032088914e106004176cf7f12f5185cf3 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 255 | 4 | assert_* | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | field.data) | modified | 9f1ab032fd0631c080488708e254c95d26a287cce4c0eb38f20bc799ee093372 | assert_*|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yield gri... | field.data) | 253 | 4 |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 189 | 12 | assert | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], ... | isinstance(t, Tensor2Field) | modified | 39b403eca9eb31c94f1f540a7876128fec00008f4dca333fcc72b57cb6beb6bf | assert|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test some tensor calculations""" grid = CartesianGrid([[0.1, ... | grid | 186 | 12 |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 89 | 4 | assert | test_divergence | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | (16, 16) | added | 80fd61885da73196e6f6eee096a83e0226da33e005e9f4c25d882b92e4413ae8 | assert|test_divergence|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vectors_bas... | null | null | null |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 213 | 8 | assert_* | test_boundary_interpolation_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | bndry_val) | added | 571ba2e1a53d31e9f3c90b6c86b8afe83ba2be7ca29f2697b8c83455e9264080 | assert_*|test_boundary_interpolation_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule... | null | null | null |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 50 | 4 | assert_* | test_gradient_field_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
from pde.grids.operators import cylindrical_sym as ops
def test_laplace_cyl():
"""test the implementation of the l... | np.cos(z)) | added | 3b2294b54796da19d2309e2743043d54390477ebb360fa99f4e165b4227361ff | assert_*|test_gradient_field_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) from pde.grids.operators import cylindrical_sym as ops def test_laplace_cyl(): """test the implementation of ... | null | null | null |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 75 | 4 | assert | test_vector_gradient_divergence_field_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
from pde.grids.operators import cylindrical_sym as ops
def test_laplace_cyl():
"""test the implementation of the l... | (3, 8, 16) | added | e102858cd00fd0cd626f876706e4b555c158e981479fcbdf4d4744016110628b | assert|test_vector_gradient_divergence_field_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) from pde.grids.operators import cylindrical_sym as ops def test_laplace_cyl(): """test the im... | null | null | null |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/grids/operators/tests/test_polar_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_polar_operators.py | 148 | 4 | assert_* | test_examples_scalar_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField
from pde.grids.operators import polar_sym as ops
def test_findiff():
"""test operator for a simple polar grid"""
grid = PolarSy... | expect.data) | added | ea1b577181bfd4c0410bbe504f56dedadc84ee8aa2b057f3a7a1c984fee7043f | assert_*|test_examples_scalar_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField from pde.grids.operators import polar_sym as ops def test_findiff(): """test operator for a simple pola... | null | null | null |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 107 | 4 | assert | test_gradient_squared | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField
from pde.grids.operators import spherical_sym as ops
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | not np.array_equal(s2.data, s3.data) | added | d013a9ed2023ac982f0c21cc0305bb6373a741ff1d6bfd87bdb7209dcfccbdd2 | assert|test_gradient_squared|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField from pde.grids.operators import spherical_sym as ops def test_findiff_sph(): """test operator for a simple... | null | null | null |
zwicker-group/py-pde | train | 181 | 4a1b9bca59e047c5e51cae9c6f248071b1c697e5 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 53 | 8 | assert | test_serialization | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | g._cache_hash() | modified | c1db4db63a9d787e22d3bc0b527a123ced6dc1407d00eb48136fa5ad746924b4 | assert|test_serialization|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipUnlessModule def... | g._cache_hash() | 53 | 8 |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 245 | 4 | assert_* | test_to_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | 2 * sf.data) | modified | 72b81d4110e624ffafc435a91d3b1c20eca9953037f936ed9b7f259d4f8eca70 | assert_*|test_to_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_g... | 2 * sf.data) | 243 | 4 |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 75 | 8 | assert_* | test_laplace_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | l2.data) | added | 76596151286a6a8d4fba96383667a0e1bad39177df742f018eec2fa591b12740 | assert_*|test_laplace_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_random_gri... | null | null | null |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 91 | 4 | assert_* | test_grid_laplace | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | b_3d.data[i, i, i]) | added | e7d6ef8a77e3c3a26de748408c260d15038ce83aa920d8f2a3a12a92a90750b5 | assert_*|test_grid_laplace|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical grid""" grid = ... | null | null | null |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 403 | 4 | assert | test_interpolate_3d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""retur... | pytest.approx(1) | modified | 9b5c3659dcc92e5d82697a8a1f4d6a1fbfa0cd0a4e29513f30bc81c64308374d | assert|test_interpolate_3d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2, period... | pytest.approx(1) | 403 | 4 |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 133 | 8 | assert | test_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | grid.operators | modified | 1c37b5552c7af2722ed5e40c7cbebee36394cf303a3d09a85f0d5e3639f092c1 | assert|test_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipUnlessModule def ite... | grid.operators | 133 | 8 |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | pde/pdes/tests/test_generic_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic_pdes.py | 41 | 4 | assert_* | test_pde_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import ScalarField, UnitGrid, pdes
@pytest.mark.parametrize("dim", [1, 2])
@pytest.mark.parametrize(
"pde_class",
[
pdes.AllenCahnPDE,
pdes.CahnHilliardPDE,
pdes.DiffusionPDE,
... | eq2.evolution_rate(state).data) | modified | 88b7c4051e1a781e0197092606876eab2dfbb997b11758e883a9a34ed7f40d65 | assert_*|test_pde_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ScalarField, UnitGrid, pdes @pytest.mark.parametrize("dim", [1, 2]) @pytest.mark.parametrize( "pde_class", [ pdes.AllenCahnPDE, pdes.CahnHilliardPDE, pdes.DiffusionPDE, pdes.KPZ... | eq2.evolution_rate(state).data) | 40 | 4 |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 193 | 8 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | ScalarField(grid, [2, 3]) | modified | 64532a4714001bf7f0eb9faa04299afa24ea9c43f686e4966a35f7b90c2d2604 | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.mis... | 0 | 191 | 4 |
zwicker-group/py-pde | train | 182 | 7d044b1888f473e0869431fe9057fff72cf02b40 | train | tests/performance_boundaries.py | train | zwicker-group/py-pde:tests/performance_boundaries.py | 48 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of different boundary conditions
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import numpy as np
from pde import ScalarField, UnitGrid
from pde.tools.mi... | result) | added | 06517ed35fd46fbebd38be02276d5dbf161cd2bc7f42b8f99a4924f0ccc59d9a | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of different boundary conditions """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) import numpy as np from pde import ScalarField, UnitGrid from pde.to... | null | null | null | |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | pde/grids/boundaries/tests/test_axes_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes_boundaries.py | 117 | 8 | assert_* | test_set_ghost_cells | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.boundaries.axes import Boundaries
from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
... | arr2[tuple(idx)]) | added | 5001faeb10978193ab2f7cc49d48df52513dc374f41312dbcc37f9ca5130ce66 | assert_*|test_set_ghost_cells|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.grids.boundaries.axes import Boundaries from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis d... | null | null | null |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | pde/grids/boundaries/tests/test_axis_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis_boundaries.py | 48 | 4 | assert | test_boundary_pair | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import pytest
from pde import UnitGrid
from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis
from pde.grids.boundaries.local import BCBase
def test_boundary_pair():
"""test setting boundary conditions for whole axi... | bc1[False] | modified | 5cb80b8d4283182f179bd32c6589e4c5128eb54807e9c48cb586fcedec6e7f79 | assert|test_boundary_pair|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import pytest from pde import UnitGrid from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis from pde.grids.boundaries.local import BCBase def test_boundary_pair(): """test setting boundary conditi... | bc1[False] | 47 | 4 |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | pde/grids/boundaries/tests/test_axis_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis_boundaries.py | 61 | 12 | assert | test_get_axis_boundaries | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import pytest
from pde import UnitGrid
from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis
from pde.grids.boundaries.local import BCBase
def test_boundary_pair():
"""test setting boundary conditions for whole axi... | b.periodic | modified | d95ca51f94dcb5b9f4e68ef54e7a232e4622c7a12d47d6b097ddfdebbad97c4f | assert|test_get_axis_boundaries|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import pytest from pde import UnitGrid from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis from pde.grids.boundaries.local import BCBase def test_boundary_pair(): """test setting boundary c... | b.periodic | 60 | 12 |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 317 | 8 | assert_* | test_make_derivative | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | res.data) | modified | 4448a149a21189324421e7f7d2789ee107e54f4f89cd7c9a466c7a9f121ea06f | assert_*|test_make_derivative|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_rando... | res.data) | 317 | 8 |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 244 | 8 | assert | test_pde_setting_noise | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | not eq.is_sde | modified | 11e902526a9c4439b7133183cd421243bd2c9feee150b5968892b7388ae6c8e6 | assert|test_pde_setting_noise|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" yiel... | not eq.is_sde | 244 | 8 |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 296 | 13 | pytest.raises | test_pde_bcs_error | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
"""generate some test grids"""
yield grids.UnitGrid([... | BCDataError) | modified | 4d2a41d1af3b2b248011e84e53971aa89df1cbcceb51b1297350cfc2ee0c391d | pytest.raises|test_pde_bcs_error|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """generate some test grids""" y... | BCDataError) | 296 | 13 |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 210 | 20 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | expected.data) | modified | d59f0ece1d25405c15ca3db9887962de898d62283844763254d369fbd589ee4b | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | expected.data) | 210 | 20 | |
zwicker-group/py-pde | train | 183 | c743342e689df91aaea48a2f82042c6d7afa4b13 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 234 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | expected.data) | modified | 92fe168402cb4c5ae5ee528d3878767910eb3332e7086ce76f61963d946cabd3 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | expected.data) | 234 | 12 | |
zwicker-group/py-pde | train | 184 | 01cdde01b28265ef03d6e5e83187dcd48d6c82af | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 31 | 4 | assert_* | test_get_arr_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_names,
)
def test_g... | a[:, 0]) | added | 8fd80acf7ca29b6555e7335b6bf5f8bee475ba7fe22f520d3a600c603b13d6a6 | assert_*|test_get_arr_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_condition_names, ) def t... | null | null | null |
zwicker-group/py-pde | train | 184 | 01cdde01b28265ef03d6e5e83187dcd48d6c82af | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 225 | 4 | assert | test_inhomogeneous_bcs_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_names,
)
def test_g... | isinstance(str(bc_x), str) | modified | 9502ad12acce5cba39c7cc3a3e24b9b235a89c8505b2382f3d5c4dc11c94c4d3 | assert|test_inhomogeneous_bcs_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_condition_names,... | 2 | 222 | 4 |
zwicker-group/py-pde | train | 184 | 01cdde01b28265ef03d6e5e83187dcd48d6c82af | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 301 | 4 | assert_* | test_expression_bc_setting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_names,
)
def test_g... | f2._data_all) | modified | c68fff7d81019594c27484684b98e4c6e77430b766e02130fc95628b618ace86 | assert_*|test_expression_bc_setting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_condition_nam... | f4._data_all) | 298 | 4 |
zwicker-group/py-pde | train | 184 | 01cdde01b28265ef03d6e5e83187dcd48d6c82af | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 353 | 4 | assert | test_getting_registered_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_names,
)
def test_g... | isinstance(registered_boundary_condition_classes(), dict) | added | d3d748abcfa9177519cb087ed52da98d28e6302e44c0c28994756834c6a22a48 | assert|test_getting_registered_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_condition_name... | null | null | null |
zwicker-group/py-pde | train | 185 | 3a628f0fedafcc0edd4e0889036e8dc03dedd65d | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 263 | 4 | assert_* | test_interpolation_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | np.full(f.data_shape, 45)) | modified | 79135fe395f19855a042d31fcc859cd76ee893158abc7530960e743f54a3589e | assert_*|test_interpolation_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( Cartes... | np.full(f.data_shape, 45)) | 263 | 4 |
zwicker-group/py-pde | train | 185 | 3a628f0fedafcc0edd4e0889036e8dc03dedd65d | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 294 | 8 | assert | test_interpolation_to_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | pytest.approx(2) | modified | feeace1ff50030715967fea032e7073dfd67cfd3dd9f3d625c30ab3c0cddd274 | assert|test_interpolation_to_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( Ca... | pytest.approx(2) | 294 | 8 |
zwicker-group/py-pde | train | 185 | 3a628f0fedafcc0edd4e0889036e8dc03dedd65d | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 373 | 8 | assert_* | test_random_rng | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | f2.data) | modified | 973154dd71645cf440915c71f96c2645e5606f587b79158592638eb85879097c | assert_*|test_random_rng|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid, C... | f2.data) | 373 | 8 |
zwicker-group/py-pde | train | 185 | 3a628f0fedafcc0edd4e0889036e8dc03dedd65d | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 389 | 16 | assert_* | test_fluctuations | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | expect) | modified | 35221d4d293f43c918a5b8ae2ecf2f25c844c53b47c011507a8e09a7ec1c3934 | assert_*|test_fluctuations|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid,... | expect) | 389 | 16 |
zwicker-group/py-pde | train | 186 | 9fcd7197d1d642808da6dfe3b4fc7f8f8b518cc9 | train | pde/visualization/tests/test_movies.py | train | zwicker-group/py-pde:pde/visualization/tests/test_movies.py | 61 | 9 | pytest.raises | test_movie_wrong_path | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.fields import ScalarField
from pde.grids import UnitGrid
from pde.pdes import DiffusionPDE
from pde.storage import MemoryStorage
from pde.visualization import movies
@pytest.mark.skipif(not movies.Movie.is_available(), reason="no... | OSError) | added | 1acfe2dc7cb2483ad89440859fbf9a14e4d508e430223497f1a20145f8a68b14 | pytest.raises|test_movie_wrong_path|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.fields import ScalarField from pde.grids import UnitGrid from pde.pdes import DiffusionPDE from pde.storage import MemoryStorage from pde.visualization import movies @pytest.mark.skipif(not movies.... | null | null | null |
zwicker-group/py-pde | train | 187 | 2dfdcf0d1893a8f96ca12397734f3a0c71c0cc26 | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 56 | 4 | assert | test_hybridmethod | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from pde.tools import misc
def test_ensure_directory_exists(tmp_path):
"""tests the ensure_directory_exists function"""
# create temporary name
path = tmp_path / "test_ensure_directory... | "class" | modified | 5b73ab8cad6ae95314deacbf8ca9d623d691a74de5de409c21a942327aea723f | assert|test_hybridmethod|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from pde.tools import misc def test_ensure_directory_exists(tmp_path): """tests the ensure_directory_exists function""" # create temporary name path = tmp_path / "test_ensure_d... | "class" | 56 | 4 |
zwicker-group/py-pde | train | 187 | 2dfdcf0d1893a8f96ca12397734f3a0c71c0cc26 | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 57 | 4 | assert | test_hybridmethod | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from pde.tools import misc
def test_ensure_directory_exists(tmp_path):
"""tests the ensure_directory_exists function"""
# create temporary name
path = tmp_path / "test_ensure_directory... | "instance" | modified | 24ca67589664a10a292ffdf05f8f2f289d90fe05cfc15578a1a39693159b9b04 | assert|test_hybridmethod|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from pde.tools import misc def test_ensure_directory_exists(tmp_path): """tests the ensure_directory_exists function""" # create temporary name path = tmp_path / "test_ensure_d... | "instance" | 57 | 4 |
zwicker-group/py-pde | train | 187 | 2dfdcf0d1893a8f96ca12397734f3a0c71c0cc26 | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 69 | 4 | assert | test_estimate_computation_speed | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from pde.tools import misc
def test_ensure_directory_exists(tmp_path):
"""tests the ensure_directory_exists function"""
# create temporary name
path = tmp_path / "test_ensure_directory... | misc.estimate_computation_speed(g, 1) | modified | 4868600fe591f44d77793afd55a79a10cf1d43e6a45b930888bfdbd3595e013d | assert|test_estimate_computation_speed|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from pde.tools import misc def test_ensure_directory_exists(tmp_path): """tests the ensure_directory_exists function""" # create temporary name path = tmp_path / ... | misc.estimate_computation_speed(g, 1) | 69 | 4 |
zwicker-group/py-pde | train | 187 | 2dfdcf0d1893a8f96ca12397734f3a0c71c0cc26 | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 99 | 4 | assert | test_hdf_write_attributes | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from pde.tools import misc
def test_ensure_directory_exists(tmp_path):
"""tests the ensure_directory_exists function"""
# create temporary name
path = tmp_path / "test_ensure_directory... | data2 | modified | 5d10aebe1986ad4d45b2284a836f03242d34d69041dc9277b394df51e36a0624 | assert|test_hdf_write_attributes|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from pde.tools import misc def test_ensure_directory_exists(tmp_path): """tests the ensure_directory_exists function""" # create temporary name path = tmp_path / "test_... | data2 | 99 | 4 |
zwicker-group/py-pde | train | 187 | 2dfdcf0d1893a8f96ca12397734f3a0c71c0cc26 | train | pde/tools/tests/test_plotting.py | test | zwicker-group/py-pde:pde/tools/tests/test_plotting.py | 58 | 4 | assert | test_plot_colorbar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import matplotlib.pyplot as plt
import matplotlib.testing.compare
import numpy as np
from pde.tools.plotting import add_scaled_colorbar, plot_on_axes, plot_on_figure
def test_plot_on_axes(tmp_path):
"""test the plot_on_axes decorator"""
@plot_... | None | added | 96bf716a7ae9d372ef6e5ab7461021913137aa726651d3f1b7aa53d21d57f61c | assert|test_plot_colorbar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import matplotlib.pyplot as plt import matplotlib.testing.compare import numpy as np from pde.tools.plotting import add_scaled_colorbar, plot_on_axes, plot_on_figure def test_plot_on_axes(tmp_path): """test the plot_on_axes decora... | null | null | null |
zwicker-group/py-pde | train | 188 | ba3ae0407b4c42a04af886bf0b92b91c1f3d3b82 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 25 | 40 | pytest.approx | test_parse_number | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | 1 + 2j) | added | 08b1a35fc57f42665cefa43f88720532ed03c7b01b35316ae2d59103cb07a755 | pytest.approx|test_parse_number|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test par... | null | null | null |
zwicker-group/py-pde | train | 188 | ba3ae0407b4c42a04af886bf0b92b91c1f3d3b82 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 82 | 4 | assert | test_single_arg | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | tuple() | added | df4bac821099b5dd2cc6635a8a37dd320d78e7141d4a35ed3dd99963aee02b66 | assert|test_single_arg|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test parse_number... | null | null | null |
zwicker-group/py-pde | train | 188 | ba3ae0407b4c42a04af886bf0b92b91c1f3d3b82 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 176 | 9 | pytest.raises | test_indexed | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | RuntimeError) | added | 5899b73a6ae0fa75df36ec8011d0d9e55c0559f2444225e9dbe1eb4865510cba | pytest.raises|test_indexed|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test parse_nu... | null | null | null |
zwicker-group/py-pde | train | 188 | ba3ae0407b4c42a04af886bf0b92b91c1f3d3b82 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 253 | 4 | assert_* | test_expression_user_funcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
"""test parse_number function"""
... | np.array([0, 0])) | added | 8b50fd72378c42548ec95e7fe227a8247548778afd9306997d73d505f9b071ec | assert_*|test_expression_user_funcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """test... | null | null | null |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 186 | 4 | assert | test_vector_laplace_cart | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | (ndim,) + bcs.grid.shape | modified | 5b61acd088cfa3b9c0547665c083c8ccb0885617d791a67719261d18160bab18 | assert|test_vector_laplace_cart|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_ran... | (ndim,) + bcs.grid.shape | 187 | 4 |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 211 | 8 | assert_* | test_div_grad_const | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | np.zeros(32)) | modified | 8cdbe4e20deb8e2a08c92f0ac524633bf17f8b090ef0f2d60bede2574d80c96d | assert_*|test_div_grad_const|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_random... | np.zeros(32)) | 212 | 8 |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 290 | 4 | assert_* | test_degenerated_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | res2.flat) | modified | fbd10aad73b734a280128f610c0ce275e93723120d13481dd103e948383d3b43 | assert_*|test_degenerated_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_rand... | res2.flat) | 291 | 4 |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 123 | 4 | assert_* | test_grid_div_grad_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | res.data[1:-1]) | modified | 556cc9ef8c9b2cf7ea363d939cd3fcf16aa7610c2dd084724b037803ecb83eb3 | assert_*|test_grid_div_grad_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | res.data[1:-1]) | 122 | 4 |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 193 | 4 | assert_* | test_examples_vector_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | expect.data) | modified | 2ca3e7a581b3aad8f5abfed76265eb9ced1ee089464a7d4b19fe97bead36288b | assert_*|test_examples_vector_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 ... | expect.data) | 192 | 4 |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 214 | 4 | assert_* | test_examples_tensor_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | expect.data) | modified | 037928cb9b51b17cef42c150191f41ff1a3604648c2f8f78f0f1d8d8f0de4622 | assert_*|test_examples_tensor_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 ... | expect.data) | 213 | 4 |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_polar_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_polar_operators.py | 181 | 4 | assert_* | test_examples_tensor_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff():
"""test operator for a simple polar grid"""
grid = Pol... | expect.data) | modified | 4f2a528a31182c2ae35b1fd66eb15dc3dbe922fca798fc6b71d38dde230a3958 | assert_*|test_examples_tensor_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff(): """test operator for a simple polar grid""" grid = Pol... | expect.data) | 181 | 4 |
zwicker-group/py-pde | train | 189 | 8260a8d53ed25e12ae5adc6db5893d35d8f2a293 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 187 | 4 | assert_* | test_examples_tensor_sph | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | expect.data) | modified | 9110af26b1e5dce42ebf611f8c1750f28475c7b4ff150a473bb59547bcdacae7 | assert_*|test_examples_tensor_sph|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical grid""" ... | expect.data) | 187 | 4 |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | pde/grids/boundaries/tests/test_axes_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes_boundaries.py | 117 | 8 | assert_* | test_set_ghost_cells | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.boundaries.axes import Boundaries
from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
... | arr2[tuple(idx)]) | modified | a6253eb5ced87802aeaf35ff94239d051c8f5b7a08ae40c70ba6317b494152f3 | assert_*|test_set_ghost_cells|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.grids.boundaries.axes import Boundaries from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis d... | arr2[tuple(idx)]) | 117 | 8 |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 302 | 4 | assert_* | test_expression_bc_setting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_names,
)
def test_g... | f3._data_full) | modified | 5531ae82404af31fc516eb050b1d3dd83b7bc89dffee1e905db82c5c16835cfb | assert_*|test_expression_bc_setting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_condition_nam... | f3._data_all) | 302 | 4 |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 353 | 4 | assert | test_getting_registered_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_names,
)
def test_g... | isinstance(registered_boundary_condition_classes(), dict) | modified | 8438362c9efd470007e4ad3bd789adb3b6165fecab7352e7f10f7710042f1efe | assert|test_getting_registered_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_condition_name... | isinstance(registered_boundary_condition_classes(), dict) | 353 | 4 |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 354 | 4 | assert | test_getting_registered_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_condition_names,
)
def test_g... | isinstance(registered_boundary_condition_names(), dict) | modified | f79f9d3cc738066d4d13c0ec96f2d65b06cc04f18054902debd13871768b6acf | assert|test_getting_registered_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, _get_arr_1d, registered_boundary_condition_classes, registered_boundary_condition_name... | isinstance(registered_boundary_condition_names(), dict) | 354 | 4 |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 316 | 8 | assert_* | test_make_derivative | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx... | res.data) | modified | 4fe3d9ffa5b4c32de4cff76c5fdade98fd22a5a807cefab4de0276486ac08102 | assert_*|test_make_derivative|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops π = np.pi def _get_rando... | res.data) | 316 | 8 |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 210 | 20 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | expected.data) | modified | 3b46a7cc3a8572371e3a65de40e0185c030d6e3e4a4839552b934f1f571f541e | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | expected.data) | 210 | 20 | |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 213 | 20 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | expected.data) | modified | 6f48b8e2d46f29a015029b866362d0ec3111782f2c5d2f9bc7dfe2d96bab5108 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | expected.data) | 213 | 20 | |
zwicker-group/py-pde | train | 190 | ee9a03130dcf4bc5b96eee5d4776dd37bf7fb3ab | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 234 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | expected.data) | modified | f016f3b879b2c7d659428b672023fd6fca619cc83eba393bef0d179f419c7f21 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | expected.data) | 234 | 12 | |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 342 | 8 | assert_* | test_boundary_interpolation_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | bndry_val) | modified | 1acf0a11276ed4d235e5afea3b33473fb1a1b1e5888547aaeaebbeeb66ceb1b8 | assert_*|test_boundary_interpolation_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.... | bndry_val) | 342 | 8 |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 413 | 4 | assert | test_complex_dtype | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | pytest.approx(2 + 2j) | modified | 7bc350411626b85c4e05fb65bbe69bd53490cfe1b567ea7e26afe8ffa96f934c | assert|test_complex_dtype|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian... | pytest.approx(2 + 2j) | 413 | 4 |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 435 | 4 | assert_* | test_complex_methods | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | np.full((2,), 2 + 4j)) | modified | 7e704ab8ea0e44685f5a3111a9c1b58088d0d6db4fea4893a41e1449e0637d49 | assert_*|test_complex_methods|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_carte... | np.full((2,), 2 + 4j)) | 435 | 4 |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 61 | 12 | assert | test_generic_cartesian_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""return a random Ca... | grid.operators | modified | bf933be9efd8813a69a93541be20d510505f31b3c0c296838aa9c817be8b6fac | assert|test_generic_cartesian_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2, periodic=Tr... | grid.operators | 61 | 12 |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 203 | 4 | assert_* | test_rect_grid_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""return a random Ca... | np.full(1, 2)) | modified | f07ae9ab32f30d852001649bc6b43a6b544bf2f0520c3bee2b0b2d339b04d3d6 | assert_*|test_rect_grid_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2, periodic=True): """... | np.full(1, 2)) | 203 | 4 |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 322 | 4 | assert | test_conversion_unit_rect_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""return a random Ca... | g2.periodic | modified | fd639d9dffe5bcc41eded9ff24bb349934c1a66eb680eeba177e966193b0433c | assert|test_conversion_unit_rect_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2, periodic... | g2.periodic | 322 | 4 |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 339 | 9 | pytest.raises | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""return a random Ca... | PeriodicityError) | modified | 6937eb0372fe47f483302c7d9af73cec22016a40b388c0eda67f1d79058db90f | pytest.raises|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2,... | PeriodicityError) | 339 | 9 |
zwicker-group/py-pde | train | 191 | 35dfd3f411b740477cc7f6b59cf1a2859b62f513 | train | pde/visualization/tests/test_movies.py | train | zwicker-group/py-pde:pde/visualization/tests/test_movies.py | 62 | 9 | pytest.raises | test_movie_wrong_path | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.fields import ScalarField
from pde.grids import UnitGrid
from pde.pdes import DiffusionPDE
from pde.storage import MemoryStorage
from pde.visualization import movies
@pytest.mark.skipif(not movies.Movie.is_available(), reason="no... | OSError) | modified | 38cd3620166a21dc777db02b83d045f605293466bf44df0b73eaf896d6878493 | pytest.raises|test_movie_wrong_path|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.fields import ScalarField from pde.grids import UnitGrid from pde.pdes import DiffusionPDE from pde.storage import MemoryStorage from pde.visualization import movies @pytest.mark.skipif(not movies.... | OSError) | 61 | 9 |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 357 | 12 | assert | test_random_normal | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | pytest.approx(s, rel=0.1, abs=0.1) | added | 006059ec594ee1abffd08f46beee46ea2e86bbc37d94ab4ddaa53f77311722dc | assert|test_random_normal|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid, ... | null | null | null |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 368 | 4 | assert | test_random_colored | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | np.allclose(f.average, 0) | added | d7ccae3392e806ecce15e6558ac85648c7e2b1e6c8a3b25b9aaea2686e2d5537 | assert|test_random_colored|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid,... | null | null | null |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 382 | 8 | assert_* | test_random_rng | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | f2.data) | added | 594b7935a90245ce948d9a73192e6cc890146d9bfcd4a869137fb47e843c18ec | assert_*|test_random_rng|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid, C... | null | null | null |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 478 | 4 | assert | test_complex_operator | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | c.is_complex | added | 18e9852d5ac101c7fde0f7e0267cfcb0931cde9e32889acffada3186097e35ef | assert|test_complex_operator|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGri... | null | null | null |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 329 | 8 | assert_* | test_boundary_interpolation_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | bndry_val) | modified | c2c568881b777cdbcb5e72e548662c41b646748e0260c061b74befdf7cf7c827 | assert_*|test_boundary_interpolation_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.... | bndry_val) | 328 | 8 |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 347 | 8 | assert_* | test_boundary_interpolation_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | bndry_val) | modified | 51305a92610167bc52dcadf5c42d67bf25b939a06fb676cbf7afa79a328a8454 | assert_*|test_boundary_interpolation_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.... | bndry_val) | 346 | 8 |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 418 | 25 | pytest.approx | test_complex_dtype | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | 2 + 2j) | added | 2f629dfc0fc8458b04bbc3a939813f903eb84b07e890b2e88a2ac830fdbfdcea | pytest.approx|test_complex_dtype|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_ca... | null | null | null |
zwicker-group/py-pde | train | 192 | bf9173598b85698cd51244afd41fd40455a8c33e | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 441 | 4 | assert_* | test_complex_methods | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | np.full((2,), 1 + 2j)) | added | 9bf4844f30ff0dee798d92d4ebcc0210ded0937e2fef997bb248597a7019129a | assert_*|test_complex_methods|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_carte... | null | null | null |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 223 | 8 | assert | test_hdf_input_output | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | f2.label | added | 7e6a960f4ec18f038bb13fdf1eea98f810f8217e34df0e7fbd63a51860a57965 | assert|test_hdf_input_output|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGri... | null | null | null |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 380 | 4 | assert | test_random_colored | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | np.allclose(f.average, 0) | added | ca8c51c3491b2f86293d6f3061b3ae98bb0086a172351d0d948a3161c0f8a137 | assert|test_random_colored|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid,... | null | null | null |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 94 | 4 | assert_* | test_laplacian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | -s.data) | added | 834fc250a17228536f7c0d1562f57c5c5bf3ab1b846b293eaf03982a105cb2fe | assert_*|test_laplacian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_g... | null | null | null |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 161 | 8 | assert_* | test_insert_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cart... | g.data) | added | 75789386027a3d7abdaba879e2461277dcffd933b641fe3a8ccbf06696042794 | assert_*|test_insert_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_g... | null | null | null |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 253 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | expected) | modified | 316431effbe12618ff45530d7985b5cd41574eb3a84879ed785b497164a31d35 | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | expected) | 253 | 8 |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 260 | 12 | assert | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | grid | modified | b2680ddc47e8a50c35bdb79780bbcb9589c4556e6835f3071c1a03ce22d9d958 | assert|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vector... | grid | 260 | 12 |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 95 | 4 | assert_* | test_grid_laplace | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | b_3d.data) | modified | 5fbeefa0f33204d6194184171d24a43347c55d8000d443d66405bd29c94f2714 | assert_*|test_grid_laplace|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 * np.pi... | b_3d.data) | 95 | 4 |
zwicker-group/py-pde | train | 193 | d0560dc6cb6f690919f3221148edae3bde1ae984 | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 193 | 4 | assert_* | test_examples_vector_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | expect.data) | modified | eb0cef50b865c5d12124f38b94952c5ee721212f7d113cd1268e1a8bb04ffa65 | assert_*|test_examples_vector_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 ... | expect.data) | 193 | 4 |
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 331 | 4 | assert | test_get_cartesian_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | grid.volume | added | e177800f794a3e253db571a14babc8f54f9666af1225d54b64458d5048a7cff1 | assert|test_get_cartesian_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianG... | null | null | null |
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 373 | 37 | pytest.approx | test_random_normal | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | s, rel=0.1, abs=0.1) | added | 29c2fe39e20537c3370532816cacb0b0501400506965518823924816abe5de57 | pytest.approx|test_random_normal|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( Cartesia... | null | null | null |
zwicker-group/py-pde | train | 194 | f9dc4f6f3589c49248d65476dbe95427325b515c | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 384 | 4 | assert | test_random_colored | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGr... | np.allclose(f.average, 0) | added | 48c0ed26e0f697ad2bffa60544e27b197300a7dbd5f27527e73f155f56364ad4 | assert|test_random_colored|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, FieldBase from pde.grids import ( CartesianGrid,... | null | null | null |
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