repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 136 | dae7e4b2bdde8088bd04f44cf1f3a1e61b880723 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 352 | 4 | assert | test_random_colored | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from ...grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid
from ...grids.cartesian import CartesianGridBase
from ...tools.misc import skipUnlessModule
from .. import ... | np.allclose(f.average, 0) | added | d9a910d8caaae37a540644da79c1ca2e639a5ca951737d571ef11f448f2b921c | assert|test_random_colored|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from ...grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid from ...grids.cartesian import CartesianGridBase from ...tools.misc import skipUnl... | null | null | null |
zwicker-group/py-pde | train | 136 | dae7e4b2bdde8088bd04f44cf1f3a1e61b880723 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 450 | 4 | assert | test_complex_operator | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from ...grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid
from ...grids.cartesian import CartesianGridBase
from ...tools.misc import skipUnlessModule
from .. import ... | np.iscomplexobj(c) | added | 15d039d63f1b54a65da36ed56649c0f35a2c5ba05ea3e95857ee79dfd330fcda | assert|test_complex_operator|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from ...grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid from ...grids.cartesian import CartesianGridBase from ...tools.misc import skipU... | null | null | null |
zwicker-group/py-pde | train | 136 | dae7e4b2bdde8088bd04f44cf1f3a1e61b880723 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 84 | 4 | assert | test_pde_vector_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | not eq.explicit_time_dependence | modified | a46953d3f823fdd4418ae96bc8a7ae3c6b25066ae6525b6187e93c638eab516b | assert|test_pde_vector_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def test_p... | not eq.explicit_time_dependence | 83 | 4 |
zwicker-group/py-pde | train | 136 | dae7e4b2bdde8088bd04f44cf1f3a1e61b880723 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 170 | 4 | assert_* | test_pde_spatial_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | np.array([0.5, 1.5])) | modified | ba0372348287f06cd30e3b0a5ddf74470bd1852fb8d8b2a066f351644cadef37 | assert_*|test_pde_spatial_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def test_... | np.array([0.5, 1.5])) | 169 | 4 |
zwicker-group/py-pde | train | 136 | dae7e4b2bdde8088bd04f44cf1f3a1e61b880723 | train | tests/performance_boundaries.py | train | zwicker-group/py-pde:tests/performance_boundaries.py | 43 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of different boundary conditions
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import numpy as np
from pde import ScalarField, UnitGrid
from pde.grids.bou... | result) | modified | d526504a3c760bf093ebe42fd2d6eb92c951910a1c8c0af0e26edfb33b8e9096 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of different boundary conditions """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) import numpy as np from pde import ScalarField, UnitGrid from pde.gr... | result) | 44 | 12 | |
zwicker-group/py-pde | train | 136 | dae7e4b2bdde8088bd04f44cf1f3a1e61b880723 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 185 | 16 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | modified | 305c57e5bb7ee5ed26e5c24254e53e107de2049d2666e5d305d8c53bac0b3968 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | result) | 186 | 16 | |
zwicker-group/py-pde | train | 136 | dae7e4b2bdde8088bd04f44cf1f3a1e61b880723 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 207 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | modified | e4b5ecc45f99755bfec59a4a9feaf0a8e2a82343ab7e4da7b2c9a9af95ede4c3 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | result) | 208 | 12 | |
zwicker-group/py-pde | train | 137 | 7d52dee20e18c3f7b0f92a19075a3cba3068d097 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 155 | 4 | assert | test_scalar_random_uniform | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | grid | added | 72840b49417dfa885a73723c5e0871048b7396d27e4d91764bf9e218c3ec0b08 | assert|test_scalar_random_uniform|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase... | null | null | null |
zwicker-group/py-pde | train | 137 | 7d52dee20e18c3f7b0f92a19075a3cba3068d097 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 171 | 4 | assert_* | test_from_scalar_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | (np.arange(3) + 0.5) ** 2) | added | b48fd28dee27a96d079d708caf7be447f3c1dd73a4d97a043e814e72c457d5f1 | assert_*|test_from_scalar_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import Field... | null | null | null |
zwicker-group/py-pde | train | 137 | 7d52dee20e18c3f7b0f92a19075a3cba3068d097 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 212 | 4 | assert | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | ["a", "a"] | added | a742898e1b88978528fd1d1de72e00253ee06443728d3de04b28fb8997d3cd7d | assert|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase from .te... | null | null | null |
zwicker-group/py-pde | train | 137 | 7d52dee20e18c3f7b0f92a19075a3cba3068d097 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 220 | 4 | assert | test_collection_1_field | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | ["a"] | added | 09f2dfb63809d6cff35ba8458218453c43e9529b0343db7fa391be5603d92571 | assert|test_collection_1_field|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase fr... | null | null | null |
zwicker-group/py-pde | train | 138 | 5d7a44104794435b21dc75f5dcb6da3d96a81570 | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 82 | 8 | assert | test_storage_truncation | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | not storage.has_collection | modified | 285d2f257156ced78fafb4949ce25d77e1c0d807f965683487afb5bf677eba26 | assert|test_storage_truncation|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_a... | not storage.has_collection | 81 | 8 |
zwicker-group/py-pde | train | 138 | 5d7a44104794435b21dc75f5dcb6da3d96a81570 | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 121 | 8 | assert_* | test_storing_extract_range | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | s1.data[1:]) | added | c236bf2de6391501f60c5a008eb1b989ca7e433b9b0d6aa4bcfa7bbcd658f3bf | assert_*|test_storing_extract_range|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import mod... | null | null | null |
zwicker-group/py-pde | train | 138 | 5d7a44104794435b21dc75f5dcb6da3d96a81570 | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 145 | 8 | assert | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | storage.has_collection | added | 6a82046ba217565e8c8561f952d92ffad12f09f0e8dc2591d30c8bf14e069a6c | assert|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_a... | null | null | null |
zwicker-group/py-pde | train | 138 | 5d7a44104794435b21dc75f5dcb6da3d96a81570 | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 171 | 8 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | ScalarField(grid, [1, 2]) | added | d975f6022b70d7e7f0e100859a63d932268d6bc3381dbab0e3487b2929b0f11e | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_availa... | null | null | null |
zwicker-group/py-pde | train | 139 | 4055b85350b84687a28143353358e8376278be01 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 215 | 4 | assert | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | [None, "b"] | added | fc2b0ce41e1443a2a8b95def848740edd3d847b8355779fec07c0258eedae897 | assert|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase from .te... | null | null | null |
zwicker-group/py-pde | train | 139 | 4055b85350b84687a28143353358e8376278be01 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 217 | 4 | assert | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | ["a", "b"] | added | 5fdeaf66ba87d3fdb673dae41be63dd8544371eee993291493aabe64a7a6d3cc | assert|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase from .te... | null | null | null |
zwicker-group/py-pde | train | 139 | 4055b85350b84687a28143353358e8376278be01 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 225 | 4 | assert | test_collection_1_field | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | ["a"] | added | 63dce38cde2980314e2b5b411f03eca4497f7efdbba70e97fe52feaf5dfed2e2 | assert|test_collection_1_field|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase fr... | null | null | null |
zwicker-group/py-pde | train | 140 | 19b84f756cdfeb4d5756eb20201cd645169b0755 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 92 | 4 | assert | test_collections_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | fc2[0].data | modified | 6674d926c84746e69b22e67d59a561802495585c18c05c0595de464a7c289598 | assert|test_collections_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase from... | fc2[0].data | 92 | 4 |
zwicker-group/py-pde | train | 140 | 19b84f756cdfeb4d5756eb20201cd645169b0755 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 155 | 4 | assert | test_scalar_random_uniform | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | grid | modified | e9da3b449beb705f4e58a61b855c73e3599e6e26cd8fd8cb425d1d33f1ec5fd0 | assert|test_scalar_random_uniform|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase... | grid | 155 | 4 |
zwicker-group/py-pde | train | 140 | 19b84f756cdfeb4d5756eb20201cd645169b0755 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 171 | 4 | assert_* | test_from_scalar_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | (np.arange(3) + 0.5) ** 2) | modified | 84a536a3dad8d79ac413141200e168f3a6e00d6af006bab9a591dfc2bc4054b1 | assert_*|test_from_scalar_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import Field... | (np.arange(3) + 0.5) ** 2) | 171 | 4 |
zwicker-group/py-pde | train | 140 | 19b84f756cdfeb4d5756eb20201cd645169b0755 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 225 | 4 | assert | test_collection_1_field | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from ...tools.misc import skipUnlessModule
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter... | ["a"] | modified | 827a96f9319fe6085b0c3db8fc4fac09bdcdf8039b0a8bd45a5e1ded8cee7216 | assert|test_collection_1_field|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from ...tools.misc import skipUnlessModule from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase fr... | ["a"] | 225 | 4 |
zwicker-group/py-pde | train | 141 | d9ead5b6b18f186f0927d0ef0e0ba72064df573c | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 173 | 8 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | ScalarField(grid, [1, 2]) | modified | a56f1121d3ea3491dd610d2517676e1d988a2b32bb0fb0d6a62147459808f7b6 | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_availa... | ScalarField(grid, [1, 2]) | 171 | 8 |
zwicker-group/py-pde | train | 141 | d9ead5b6b18f186f0927d0ef0e0ba72064df573c | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 174 | 8 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | ScalarField(grid, [2, 3]) | modified | 167817c9e48c370e414284b5457e4891038a9113977f5a38f7656da127de9595 | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_availa... | ScalarField(grid, [2, 3]) | 172 | 8 |
zwicker-group/py-pde | train | 141 | d9ead5b6b18f186f0927d0ef0e0ba72064df573c | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 203 | 8 | assert_* | test_storage_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | s1.times) | added | 4bf5062ae7591859e11d3e62d98015d8408710f4c49b1a911af6ee55fceb143d | assert_*|test_storage_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_avail... | null | null | null |
zwicker-group/py-pde | train | 141 | d9ead5b6b18f186f0927d0ef0e0ba72064df573c | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 205 | 8 | assert | test_storage_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import File... | s1[1] | added | 1c2f16d363d013855fc46ff23c853eb03cd6bbcb26a3eae764036e06bdc9f05b | assert|test_storage_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_availab... | null | null | null |
zwicker-group/py-pde | train | 144 | 770183562235179914b2ac67c6236a9f38bb98ea | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 177 | 9 | pytest.raises | test_from_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ...tools.misc import module_available, skipUnlessModule
from .. import ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
def test_vectors():
""" te... | ValueError) | added | a24535552efe4b5b0e845742b090c59c60cb864c1a957160f3559da931eca336 | pytest.raises|test_from_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ...tools.misc import module_available, skipUnlessModule from .. import ScalarField, Tensor2Field, VectorField from ..base import FieldBas... | null | null | null |
zwicker-group/py-pde | train | 144 | 770183562235179914b2ac67c6236a9f38bb98ea | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 198 | 8 | assert_* | test_boundary_interpolation_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ...tools.misc import module_available, skipUnlessModule
from .. import ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
def test_vectors():
""" te... | bndry_val) | added | 346f650c1f590079dae3f028a8fa08ccc45eb2ad1421f9575ce2419b22e3bbdf | assert_*|test_boundary_interpolation_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ...tools.misc import module_available, skipUnlessModule from .. import ScalarField, Tensor2Field, VectorField from ..base import ... | null | null | null |
zwicker-group/py-pde | train | 144 | 770183562235179914b2ac67c6236a9f38bb98ea | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 201 | 8 | assert_* | test_boundary_interpolation_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ...tools.misc import module_available, skipUnlessModule
from .. import ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
def test_vectors():
""" te... | bndry_val) | added | a20e8ef9b077c666a33dee9611c26cc2f1951fa554b3d7b7a7517fe4dd95b5ff | assert_*|test_boundary_interpolation_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ...tools.misc import module_available, skipUnlessModule from .. import ScalarField, Tensor2Field, VectorField from ..base import ... | null | null | null |
zwicker-group/py-pde | train | 144 | 770183562235179914b2ac67c6236a9f38bb98ea | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 235 | 4 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ...tools.misc import module_available, skipUnlessModule
from .. import ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
def test_vectors():
""" te... | expected) | modified | 2d7e723c02fa64f6d769f5e66dbaeaaba21b83450e6ccf9c1ddc32040182bbae | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ...tools.misc import module_available, skipUnlessModule from .. import ScalarField, Tensor2Field, VectorField from ..base import FieldBase def ... | res) | 234 | 8 |
zwicker-group/py-pde | train | 144 | 770183562235179914b2ac67c6236a9f38bb98ea | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 209 | 4 | assert | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | not eq.explicit_time_dependence | added | 2fbad6996921c3df6c5c4beb3e8999d500601733455228b8c7c5332b28a75f2b | assert|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def te... | null | null | null |
zwicker-group/py-pde | train | 144 | 770183562235179914b2ac67c6236a9f38bb98ea | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 210 | 4 | assert | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | not eq.complex_valued | added | 35b4e64aacd638cc3e3a24a0f96499d9a05fcd2e6f997a0ad713f874ea5b64fc | assert|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def te... | null | null | null |
zwicker-group/py-pde | train | 144 | 770183562235179914b2ac67c6236a9f38bb98ea | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 213 | 4 | assert_* | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | field.data) | added | 31c367d00c6236695f5ffc86b97d5a2a3c908666446104db845d2af1c7149015 | assert_*|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def ... | null | null | null |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 170 | 4 | assert_* | test_pde_spatial_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | np.array([0.5, 1.5])) | modified | 95e74d859ae1be6d2b6b23d14040be46ad8297a091e7f0cf2ce8c6b142fcf330 | assert_*|test_pde_spatial_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def test_... | np.array([0.5, 1.5])) | 170 | 4 |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 191 | 4 | assert | test_pde_complex | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | not eq.explicit_time_dependence | modified | 8ad48067164321d036a50a0695bd08f4cf39105a109589189f7970c6583d95f5 | assert|test_pde_complex|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def test_pde_wro... | not eq.explicit_time_dependence | 191 | 4 |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 210 | 4 | assert | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | not eq.complex_valued | modified | 2b86b0c95d3e49a441b08ba95f2988d03d3b13960acbcdffb455d279fd0f078e | assert|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def te... | not eq.complex_valued | 210 | 4 |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 249 | 9 | pytest.raises | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import FieldCollection, ScalarField, VectorField
from ...grids import UnitGrid
from ...grids.tests.test_generic import iter_grids
from .. import PDE, SwiftHohenbergPDE
def test_pde_wrong_input():
""" ... | Exception) | added | c92cf482aeba77e3dda34b6be7582e2f84f888c20a3acfa3e799dd833ee0dea2 | pytest.raises|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import FieldCollection, ScalarField, VectorField from ...grids import UnitGrid from ...grids.tests.test_generic import iter_grids from .. import PDE, SwiftHohenbergPDE def test_p... | null | null | null |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 237 | 4 | assert_* | test_expression_user_funcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ..expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) ==... | np.array([0, 0])) | added | 1ebbe4786049fa017c3040cf78748c878151b1cd3c4a424455616b012b4b91fc | assert_*|test_expression_user_funcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ..expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert pa... | null | null | null |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 251 | 4 | assert | test_complex_expression | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ..expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) ==... | expr.complex | added | 58297f54e11e96441b087538ea4983e03182d077d96720119d9a8c600a2fe180 | assert|test_complex_expression|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ..expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_n... | null | null | null |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 259 | 4 | assert | test_expression_special | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ..expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) ==... | not expr.constant | added | 44b261e274fec2c7fdbfb59e817ed55e6327f1a2279d69f2bdcadf95ca6f17c8 | assert|test_expression_special|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ..expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_n... | null | null | null |
zwicker-group/py-pde | train | 145 | 5f003348773a5017539454239054f19d86f059cc | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 283 | 4 | assert_* | test_expression_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ..expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) ==... | np.array([3, 5])) | added | 73c6782a2b47237bd393fc0e2d024b83e3c8402565e6c0a41b4ade0aa0d2c4d2 | assert_*|test_expression_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ..expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_... | null | null | null |
zwicker-group/py-pde | train | 146 | 90f0952baf42ff33b8f36c773a04e80755da98b8 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 140 | 8 | assert | test_spherical_index | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import math
import random
import numpy as np
import pytest
from scipy import integrate, spatial
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radiu... | k_max + 1 | modified | bf5769c373a358b51d1346b4d767ab9db249595e838b69f5ea10dd36feae7066 | assert|test_spherical_index|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import math import random import numpy as np import pytest from scipy import integrate, spatial from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in [1, 2, 3]... | m == l | 142 | 12 |
zwicker-group/py-pde | train | 146 | 90f0952baf42ff33b8f36c773a04e80755da98b8 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 146 | 12 | assert | test_spherical_index | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import math
import random
import numpy as np
import pytest
from scipy import integrate, spatial
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radiu... | is_optimal | added | 76417cca7c8a2002c40487ea06ae6469b87bdc753495ad9d9c8c7c570adf4dd8 | assert|test_spherical_index|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import math import random import numpy as np import pytest from scipy import integrate, spatial from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in [1, 2, 3]... | null | null | null |
zwicker-group/py-pde | train | 146 | 90f0952baf42ff33b8f36c773a04e80755da98b8 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 173 | 16 | assert | test_spherical_harmonics_real | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import math
import random
import numpy as np
import pytest
from scipy import integrate, spatial
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radiu... | pytest.approx(1) | modified | e65e66b716700e6f5ba067ee57047b78c20cb5a64cf775f79be4edfe8dd17134 | assert|test_spherical_harmonics_real|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import math import random import numpy as np import pytest from scipy import integrate, spatial from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in ... | pytest.approx(0) | 171 | 16 |
zwicker-group/py-pde | train | 146 | 90f0952baf42ff33b8f36c773a04e80755da98b8 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 175 | 16 | assert | test_spherical_harmonics_real | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import math
import random
import numpy as np
import pytest
from scipy import integrate, spatial
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radiu... | pytest.approx(0) | added | 2c97e6797038d64042ca66be00ec026526530ff5faf4d118aed4f066ce4dd8c1 | assert|test_spherical_harmonics_real|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import math import random import numpy as np import pytest from scipy import integrate, spatial from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in ... | null | null | null |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 150 | 4 | assert | test_scalar_random_uniform | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sing... | grid | modified | 7217248c9e355647f92abd07efc9dff03d1b4fc7661dfa45dfb254b4bd74fdc3 | assert|test_scalar_random_uniform|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields(e... | "b" | 153 | 4 |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 198 | 4 | assert | test_mixed_condition | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1... | pytest.approx(-1) | modified | 2b65b14b50e88503d913f08e645f0a92a9ac46fe5cbb146e3ffaa1d8e1e6dbd8 | assert|test_mixed_condition|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr... | pytest.approx(-1) | 199 | 4 |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 177 | 4 | assert | test_vector_gradient | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.operators import cartesian as ops
from scipy import ndimage
π = np.pi
def _get_random_grid_bcs(ndim: int, dx="random", periodic="random"... | (ndim, ndim) + bcs.grid.shape | modified | 5f3a34d215a8550073a9f12786a6f862614d21da13960490c27929b0a10f2af4 | assert|test_vector_gradient|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.operators import cartesian as ops from scipy import ndimage π = np.pi def _get_random_grid_bcs(ndim: int, dx="ran... | (ndim, ndim) + bcs.grid.shape | 179 | 4 |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/grids/tests/test_spherical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical_grids.py | 188 | 4 | assert | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarGrid, ScalarField, SphericalGrid
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid])
def test_spherical_base_bcs(grid_cl... | b_inner | added | 8d9bb623096d9d84c1c2c44e6479ae2f422fa769c3a88a1f11af17246ee59be9 | assert|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarGrid, ScalarField, SphericalGrid from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid]... | null | null | null |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/pdes/tests/test_diffusion_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion_pdes.py | 33 | 4 | assert_* | test_simple_diffusion_value | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert isinstance(str(eq), str)
assert isinsta... | grid.axes_coords[0]) | modified | 5eb42a1681e50a08ad6bc40999bd0a7e1c55d42468a9c171552cb8b4b3d1d403 | assert_*|test_simple_diffusion_value|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = DiffusionPDE() assert isinstance(str(eq), s... | grid.axes_coords[0]) | 36 | 4 |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 258 | 4 | assert | test_expression_special | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.... | not expr.constant | modified | 9364479a073958e40ecb729dd71b827da3e3d02d39dd5eadec6f18c605482882 | assert|test_expression_special|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert... | not expr.constant | 259 | 4 |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/tools/tests/test_math.py | train | zwicker-group/py-pde:pde/tools/tests/test_math.py | 22 | 4 | assert_* | test_SmoothData1D | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde.tools.math import SmoothData1D
def test_SmoothData1D():
""" test smoothing """
x = np.random.uniform(0, 1, 128)
xs = np.linspace(0, 1, 16)[1:-1]
s = SmoothData1D(x, np.ones_like(x))
np.testing.assert_all... | np.sin(xs)) | modified | 50369f7dcd7bed28921bebbd85bef18e8159f73ab38611daee46ad8d2003fa35 | assert_*|test_SmoothData1D|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde.tools.math import SmoothData1D def test_SmoothData1D(): """ test smoothing """ x = np.random.uniform(0, 1, 128) xs = np.linspace(0, 1, 16)[1:-1] s = SmoothData1D(x, np.ones_like(x)) np.testing.assert_a... | np.sin(xs)) | 23 | 4 |
zwicker-group/py-pde | train | 147 | b4da30bff2fc414937aa20231e132063db6cfcd4 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 29 | 35 | pytest.approx | test_volume_conversion_numba | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import math
import random
import numpy as np
import pytest
from pde.tools import spherical
from scipy import integrate, spatial
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
... | radius) | modified | bb6d19fcb599375faf1e28dbf16691ad6f05c53c56575bc847e38a5f2784fe37 | pytest.approx|test_volume_conversion_numba|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import math import random import numpy as np import pytest from pde.tools import spherical from scipy import integrate, spatial def test_volume_conversion(): """ tests conversion of volume and radius of droplet ""... | radius) | 30 | 35 |
zwicker-group/py-pde | train | 148 | 5962f502330b3e2d1c8dc9c5e65697d9115a5656 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 272 | 4 | assert | test_expression_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.... | expr.constant | modified | 1c649c8ec04cc42dd8ea2c08d2273ffaeb162e245f68ee751a196bc634a3433f | assert|test_expression_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert ... | 1 | 269 | 4 |
zwicker-group/py-pde | train | 148 | 5962f502330b3e2d1c8dc9c5e65697d9115a5656 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 279 | 4 | assert | test_expression_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.... | not expr.constant | modified | 6c58674d33c9cff94f06ad1705a03a6a2c2890229f861417a12e7baa630bab9a | assert|test_expression_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert ... | not expr.constant | 280 | 4 |
zwicker-group/py-pde | train | 148 | 5962f502330b3e2d1c8dc9c5e65697d9115a5656 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 280 | 4 | assert | test_expression_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.... | not expr.depends_on("a") and expr.depends_on("b") | modified | bc6d19c6a8c725302dccab64ac593a31a18c921e000910392bac0692fe07130a | assert|test_expression_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert ... | 3 | 277 | 4 |
zwicker-group/py-pde | train | 148 | 5962f502330b3e2d1c8dc9c5e65697d9115a5656 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 287 | 4 | assert_* | test_expression_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.... | np.array([3, 5])) | added | 881169e637df1765415c9ab802a4079b24ea50484379ca442e83c561d97f9646 | assert_*|test_expression_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.expressions import ScalarExpression, TensorExpression, parse_number def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) asser... | null | null | null |
zwicker-group/py-pde | train | 149 | 9f2fbbeff8f2acc34d37d0b8e7f1eb7eb79deb2b | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 161 | 9 | pytest.raises | test_pde_noise | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Car... | ValueError) | modified | 545c24bb418ea6a3fcab0ec8f07306c89b11ca9e3c11aa93c32c53e2524d42b9 | pytest.raises|test_pde_noise|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, False]) y... | ValueError) | 161 | 9 |
zwicker-group/py-pde | train | 149 | 9f2fbbeff8f2acc34d37d0b8e7f1eb7eb79deb2b | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 175 | 4 | assert_* | test_pde_spatial_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Car... | np.array([0.5, 1.5])) | modified | 0e06f81471ec6b9478eb1454fce8e31c66a4e2b63c8b36996d6288347f5fc88b | assert_*|test_pde_spatial_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, False])... | np.array([0.5, 1.5])) | 175 | 4 |
zwicker-group/py-pde | train | 149 | 9f2fbbeff8f2acc34d37d0b8e7f1eb7eb79deb2b | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 218 | 4 | assert_* | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Car... | field.data) | modified | a643f067b2d0808923d39a2c3924abe740e23490b16a2b2047326df67e70df6b | assert_*|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, Fa... | field.data) | 218 | 4 |
zwicker-group/py-pde | train | 149 | 9f2fbbeff8f2acc34d37d0b8e7f1eb7eb79deb2b | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 254 | 9 | pytest.raises | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Car... | Exception) | modified | d26d50d392f7f41c498a79003f331bf0673adb2a6d75436b1bd6b3e37410fbcc | pytest.raises|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, False]) ... | Exception) | 254 | 9 |
zwicker-group/py-pde | train | 149 | 9f2fbbeff8f2acc34d37d0b8e7f1eb7eb79deb2b | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 54 | 9 | pytest.raises | test_unsupported_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import DiffusionPDE, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitSolver
def test_compare_explicit():
""" test explicit solvers """
grid = UnitGrid([16, 16])
field = ScalarField.... | RuntimeError) | modified | 6826acb10ddab3941adccb89a4d3ebb13d6902bd8f913f38df36bafe99828ef0 | pytest.raises|test_unsupported_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import DiffusionPDE, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitSolver def test_compare_explicit(): """ test explicit solvers """ grid = Unit... | RuntimeError) | 54 | 9 |
zwicker-group/py-pde | train | 149 | 9f2fbbeff8f2acc34d37d0b8e7f1eb7eb79deb2b | train | pde/solvers/tests/test_generic_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_generic_solvers.py | 45 | 4 | assert_* | test_compare_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid
from pde.solvers import (
Controller,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
registered_solvers,
)
def test_solver_regis... | s2.data) | modified | 14fbfb19d9e73a16a5a35d9c107abb59ef5b3da188859af8b4d15ac9bc7278f9 | assert_*|test_compare_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid from pde.solvers import ( Controller, ExplicitSolver, ImplicitSolver, ScipySolver, registered_solvers, ) def test_solve... | s2.data) | 45 | 4 |
zwicker-group/py-pde | train | 149 | 9f2fbbeff8f2acc34d37d0b8e7f1eb7eb79deb2b | train | pde/solvers/tests/test_generic_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_generic_solvers.py | 53 | 4 | assert | test_solvers_complex | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid
from pde.solvers import (
Controller,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
registered_solvers,
)
def test_solver_regis... | c.is_complex | modified | 557fb297534bddee315231a18c8b88415f033e5f4b0c9e7fa62b017dac3bace1 | assert|test_solvers_complex|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid from pde.solvers import ( Controller, ExplicitSolver, ImplicitSolver, ScipySolver, registered_solvers, ) def test_solver_... | c.is_complex | 53 | 4 |
zwicker-group/py-pde | train | 150 | 5383cef1c27fecd512e33ed76d337ecafec22554 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 332 | 8 | assert_* | test_boundary_interpolation_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
from... | bndry_val) | added | 73332f380edd75823c40e2848ac40d47c6cdb8470568921b255e4be4f18b94d8 | assert_*|test_boundary_interpolation_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesia... | null | null | null |
zwicker-group/py-pde | train | 150 | 5383cef1c27fecd512e33ed76d337ecafec22554 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 346 | 4 | assert_* | test_numpy_ufuncs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
from... | f1.data + 2) | added | 8e297ec41bb21a079ec603cf2cb77aa252c7f2c8b8981079bd745a887f407df8 | assert_*|test_numpy_ufuncs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_grids impor... | null | null | null |
zwicker-group/py-pde | train | 150 | 5383cef1c27fecd512e33ed76d337ecafec22554 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 397 | 25 | pytest.approx | test_complex_dtype | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
from... | 2 + 2j) | added | 7b05314625fcdb8095dd57f3fee3b845b5050956a4206199720572116e3a4891 | pytest.approx|test_complex_dtype|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_grids... | null | null | null |
zwicker-group/py-pde | train | 150 | 5383cef1c27fecd512e33ed76d337ecafec22554 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 426 | 4 | assert | test_complex_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
from... | pytest.approx(0) | added | ef00cf5c7fe7520253432af1a7d3eb98fa891a18105d983f7bee850893a285dd | assert|test_complex_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_grids im... | null | null | null |
zwicker-group/py-pde | train | 151 | 41fb756f28efb70f2897127d84536902c8b856ea | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 103 | 8 | assert | test_individual_boundaries_multidimensional | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1... | bc_copy | modified | c908d1c18e08e3998dc970b7fd771f0f07245e6d82834ff5a3681636d5a68263 | assert|test_individual_boundaries_multidimensional|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1... | bc_copy | 102 | 8 |
zwicker-group/py-pde | train | 151 | 41fb756f28efb70f2897127d84536902c8b856ea | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 132 | 8 | assert | test_virtual_points | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1... | not bc.value_is_linked | modified | 589e2cebabe8ce62a802ab10c54d44f43f4d046af68b4c095d4cf404885b0bee | assert|test_virtual_points|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_... | not bc.value_is_linked | 131 | 8 |
zwicker-group/py-pde | train | 151 | 41fb756f28efb70f2897127d84536902c8b856ea | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 196 | 8 | assert | test_mixed_condition | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1... | pytest.approx(bc2.get_virtual_point(data)) | modified | f8871acadbf75e0e029bcb6ae77e72a7fade8f05cca0a02dfe889bea6ecbeecd | assert|test_mixed_condition|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr... | pytest.approx(bc2.get_virtual_point(data)) | 195 | 8 |
zwicker-group/py-pde | train | 151 | 41fb756f28efb70f2897127d84536902c8b856ea | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 248 | 4 | assert | test_inhomogeneous_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1... | pytest.approx(1) | modified | 844aa96aa7b42b0ddff69cbd44992e20788a439283a26203e904be758d8bc084 | assert|test_inhomogeneous_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_a... | pytest.approx(2.5) | 245 | 4 |
zwicker-group/py-pde | train | 151 | 41fb756f28efb70f2897127d84536902c8b856ea | train | pde/tests/test_integration.py | train | zwicker-group/py-pde:pde/tests/test_integration.py | 32 | 4 | assert_* | test_inhomogeneous_bcs | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
def test_writing_to_storage(tm... | 0.9 * np.sin(data["data_x"])) | modified | ae569c24068176fc836b590725e7f8c6dfb14f065ea05f5a9d7127dd1561b28d | assert_*|test_inhomogeneous_bcs|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") de... | 0.9 * np.sin(data["data_x"])) | 31 | 4 |
zwicker-group/py-pde | train | 151 | 41fb756f28efb70f2897127d84536902c8b856ea | train | pde/tests/test_integration.py | train | zwicker-group/py-pde:pde/tests/test_integration.py | 42 | 4 | assert_* | test_inhomogeneous_bcs | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
def test_writing_to_storage(tm... | expect.data) | added | 66ed3c814b268afa17600400ad588955e40f1f9e1de79abacae38e7feba8ad40 | assert_*|test_inhomogeneous_bcs|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") de... | null | null | null |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | pde/grids/boundaries/tests/test_axes_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes_boundaries.py | 96 | 4 | assert | test_bc_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.boundaries.axes import Boundaries
from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
... | bc[0].low.value == 10 and bc[0].high.value == 15 | modified | 609ec650ea11ba88ed8d4a4c6be85332fc94e7812edbdcd751e1bb23fe0fc384 | assert|test_bc_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.grids.boundaries.axes import Boundaries from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def test_... | bc[0].low.value == 10 and bc[0].high.value == 15 | 97 | 4 |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | pde/grids/operators/tests/test_cylindrical_operators.py | test | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical_operators.py | 102 | 4 | assert_* | test_findiff_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, CylindricalGrid, ScalarField, VectorField
from pde.grids.operators import cylindrical as ops
def test_laplace_cyl():
""" test the implementation of the laplace operator """
for boundary_z in ["pe... | [[8, 8], [y1, y1], [y2, y2]]) | modified | 5636f24ecdba22b7e57f62f236519f3b66973c6012d1110b12a2f7ef287cc9ba | assert_*|test_findiff_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, CylindricalGrid, ScalarField, VectorField from pde.grids.operators import cylindrical as ops def test_laplace_cyl(): """ test the implementation of the laplace operator """ for bou... | [[8, 8], [y1, y1], [y2, y2]]) | 102 | 4 |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | pde/grids/operators/tests/test_polar_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_polar_operators.py | 107 | 4 | assert_* | test_grid_div_grad | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarGrid, ScalarField, Tensor2Field, VectorField
from pde.grids.operators import polar as ops
def test_findiff():
""" test operator for a simple polar grid """
grid = PolarGrid(1.5... | res[1:-1]) | modified | 92261d0361f07c4c952d10a791f830130a5ebbd3ba43e911e5e4b50866c9ab62 | assert_*|test_grid_div_grad|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarGrid, ScalarField, Tensor2Field, VectorField from pde.grids.operators import polar as ops def test_findiff(): """ test operator for a simple polar grid """ gri... | res[1:-1]) | 107 | 4 |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 117 | 4 | assert_* | test_grid_div_grad | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, SphericalGrid, Tensor2Field, VectorField
from pde.grids.operators import spherical as ops
def test_findiff_sph():
""" test operator for a simple spherical grid """
grid... | res[1:-1]) | modified | f3387388ea7ca85a09a61c9c1180cc734c3d2df1b3af979a9e0e63fc5aa04821 | assert_*|test_grid_div_grad|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, SphericalGrid, Tensor2Field, VectorField from pde.grids.operators import spherical as ops def test_findiff_sph(): """ test operator for a simple spheri... | res[1:-1]) | 117 | 4 |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 377 | 9 | pytest.raises | test_interpolate_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" retur... | DomainError) | modified | d976e0e4835fc7cf4d4c2382db04250f4bb5479a4912b346b2d6de35d26c8aab | pytest.raises|test_interpolate_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2,... | DomainError) | 377 | 9 |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 402 | 4 | assert | test_interpolate_3d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" retur... | pytest.approx(1) | modified | 7c23c04b431437245a87031e2d0e9d68e05333f09eba894428623ed3ae77e21a | assert|test_interpolate_3d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2, period... | pytest.approx(1) | 402 | 4 |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | pde/grids/tests/test_cylindrical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical_grids.py | 64 | 9 | pytest.raises | test_setting_domain_cylindrical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
... | ValueError) | modified | 6be3105ed7cfa789ba2ccc978b99b128a6c1a1d17146747a0116029eedb760e1 | pytest.raises|test_setting_domain_cylindrical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalGrid, ScalarField from pde.grids.boundaries.local import NeumannBC def test_cylindrical_grid(): """ test simple cylindrical grid """ fo... | ValueError) | 64 | 9 |
zwicker-group/py-pde | train | 152 | afe944bf418ed3d8ac717e576f7bf5cb9715c28e | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 185 | 16 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | modified | f2859219bdf9642b47ca20fd636f28238b165ad2c66ded59a8fadeb8d8b1e346 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | result) | 185 | 16 | |
zwicker-group/py-pde | train | 153 | cc03737ac1262d58bf4d3426b1b79a9d6f3acc95 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 236 | 9 | pytest.raises | test_interpolation_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid
from pde.grids.c... | ValueError) | modified | 4b6047b7751a4c821926065c69068bd5165f22427e088dbbd34d0535b868203f | pytest.raises|test_interpolation_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, S... | ValueError) | 237 | 9 |
zwicker-group/py-pde | train | 153 | cc03737ac1262d58bf4d3426b1b79a9d6f3acc95 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 280 | 4 | assert | test_get_cartesian_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid
from pde.grids.c... | grid.volume | modified | 521752ef415cd5c071fd6f579e8343ea0435410a9c35461ffed0d48403febb87 | assert|test_get_cartesian_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalG... | grid.volume | 281 | 4 |
zwicker-group/py-pde | train | 153 | cc03737ac1262d58bf4d3426b1b79a9d6f3acc95 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 370 | 8 | assert_* | test_smoothing | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid
from pde.grids.c... | expected) | modified | dbd4d6edcc5b0c3dec0c6863c27ab36d3d57624f23a2581dcd79f310ae296688 | assert_*|test_smoothing|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, Un... | expected) | 372 | 8 |
zwicker-group/py-pde | train | 153 | cc03737ac1262d58bf4d3426b1b79a9d6f3acc95 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 431 | 4 | assert | test_complex_operator | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid
from pde.grids.c... | c.is_complex | modified | 26832ba0c63e49fee511c651ee8bad44211de82a305dc296e4c8a744655460c8 | assert|test_complex_operator|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGri... | c.is_complex | 433 | 4 |
zwicker-group/py-pde | train | 154 | ba4dae99debe3c73db54ee5fd90cb12caedf87d1 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 104 | 26 | pytest.approx | test_integration | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
from functools import partial
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():... | grid.integrate(arr, axes=0)) | added | 3f7c2be17c251db8d421ecf6df7df7a2e162e0d5d3c43c08d639d8a5a161d0bc | pytest.approx|test_integration|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy from functools import partial import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnl... | null | null | null |
zwicker-group/py-pde | train | 154 | ba4dae99debe3c73db54ee5fd90cb12caedf87d1 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 115 | 9 | pytest.raises | test_grid_plotting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
from functools import partial
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():... | NotImplementedError) | added | 3b507b20f647ec303172ae2131ec073fcc76118b8ca3df83f274a6e966832e3f | pytest.raises|test_grid_plotting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy from functools import partial import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipU... | null | null | null |
zwicker-group/py-pde | train | 154 | ba4dae99debe3c73db54ee5fd90cb12caedf87d1 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 133 | 8 | assert | test_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
from functools import partial
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():... | grid.operators | added | 236e04dfabc072e5d202f659e1e589e96e74bb3851926c3764462f6420a19f8d | assert|test_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy from functools import partial import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnlessModule... | null | null | null |
zwicker-group/py-pde | train | 154 | ba4dae99debe3c73db54ee5fd90cb12caedf87d1 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 156 | 12 | assert | test_normalize_point | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
from functools import partial
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():... | pytest.approx(y) | added | 881fdb94b01b9e91a7bd3f77afe1af4ba56ddb5050addf76164b5538b154d355 | assert|test_normalize_point|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy from functools import partial import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnless... | null | null | null |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 89 | 13 | pytest.raises | test_arithmetics | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid... | TypeError) | modified | 2b6e56e6389beefa86b9cecc44f958ee51618d9c1b93725f20b4930340893f8b | pytest.raises|test_arithmetics|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, CylindricalG... | TypeError) | 88 | 13 |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 142 | 4 | assert_* | test_gradient_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx="random", periodic="random... | np.zeros((1, 5))) | modified | 21bbe4e4d31a5ad9f63d507a78882b4355853f477b6d96a7db7f061bf38e0007 | assert_*|test_gradient_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.operators import cartesian as ops π = np.pi def _get_random_grid_bcs(ndim: int, dx="rando... | np.zeros((1, 5))) | 141 | 4 |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/grids/operators/tests/test_cartesian_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian_operators.py | 269 | 4 | assert_* | test_gradient_squared | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.grids.operators import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx="random", periodic="random... | s3.data) | modified | 3869ce7b42be80c4a1547d1b0d5c3a60d9ec0e24bc789bc437ca37c2e92c2032 | assert_*|test_gradient_squared|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, UnitGrid from pde.grids.operators import cartesian as ops π = np.pi def _get_random_grid_bcs(ndim: int, dx="... | s3.data) | 268 | 4 |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/tools/tests/test_cache.py | train | zwicker-group/py-pde:pde/tools/tests/test_cache.py | 521 | 4 | assert | test_serialized_dict | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import collections
import copy
import sys
import numpy as np
import pytest
from pde.tools import cache
def deep_getsizeof(obj, ids=None):
"""Find the memory footprint of a Python object
This is a recursive function that drills down a Python... | ["a"] | modified | ea78d97fa542a21ad367f2b6ba6e55c0fe25a89204d2b4dac55a26f6c9ab040e | assert|test_serialized_dict|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import collections import copy import sys import numpy as np import pytest from pde.tools import cache def deep_getsizeof(obj, ids=None): """Find the memory footprint of a Python object This is a recursive function that drills... | ["a"] | 522 | 4 |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 30 | 9 | pytest.raises | test_config | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test typical config objects """
from pde.tools.numba import NUMBA_PARALLEL
c = Config(mode="insert")
assert c["numba.parallel"] == NUMBA_PARALLEL
c["numba.p... | KeyError) | added | c9e526f45608f3b5cf2ba0a09e31677db07a7d09c2ae8bf62852440423aa90ae | pytest.raises|test_config|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test typical config objects """ from pde.tools.numba import NUMBA_PARALLEL c = Config(mode="insert") assert c["numba.parallel"] == NUMBA_PARALLEL c["numba.... | null | null | null |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 47 | 8 | assert | test_colored_noise | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import fftpack, stats
from pde import CartesianGrid, UnitGrid
from pde.tools.spectral import make_colored_noise
def spectral_density(data, dx=1.0):
"""calculate the power spectral density of a field
... | 2e-5 | modified | fa40716c4db859f1c605623622be7f768e1bcbda6eb6066fbc4f8433a32bcc3b | assert|test_colored_noise|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import fftpack, stats from pde import CartesianGrid, UnitGrid from pde.tools.spectral import make_colored_noise def spectral_density(data, dx=1.0): """calculate the power spectral densit... | 2e-5 | 46 | 8 |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 77 | 12 | assert | test_noise_scaling | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import fftpack, stats
from pde import CartesianGrid, UnitGrid
from pde.tools.spectral import make_colored_noise
def spectral_density(data, dx=1.0):
"""calculate the power spectral density of a field
... | pytest.approx(0) | modified | 74e098c174412502f8db050c4079b0d32bd9ff74ad53a5e22de02258e50448c8 | assert|test_noise_scaling|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import fftpack, stats from pde import CartesianGrid, UnitGrid from pde.tools.spectral import make_colored_noise def spectral_density(data, dx=1.0): """calculate the power spectral densit... | pytest.approx(0) | 76 | 12 |
zwicker-group/py-pde | train | 155 | 6fff68cd2477644d90f6aad06f802d608b54c415 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 51 | 70 | pytest.approx | test_surface | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import math
import random
import numpy as np
import pytest
from scipy import integrate, spatial
from pde.tools import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
... | radius) | modified | bee96b2efc87a063f3e37b80509a849580f9ef149228ca140f091514f626f2fa | pytest.approx|test_surface|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import math import random import numpy as np import pytest from scipy import integrate, spatial from pde.tools import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in [1,... | radius) | 50 | 70 |
zwicker-group/py-pde | train | 156 | 53f86fe2f54a50147d70a7b63c9f331013091a49 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 17 | 4 | assert | test_config | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert | any("numba.parallel_threshold" == k for k in c) | added | 2d6834b0359bc4ba1a7ca8bff4bd1200c8bc6110e74acde3ea046c4ee9c84e0f | assert|test_config|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert | null | null | null |
zwicker-group/py-pde | train | 156 | 53f86fe2f54a50147d70a7b63c9f331013091a49 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 40 | 9 | pytest.raises | test_config_modes | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert any("numba.parallel_thres... | KeyError) | added | e421b91d4d010bd08c388a34364d5f3a78651e6405891eaaac796886a1148d7b | pytest.raises|test_config_modes|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert any("numba.parallel... | null | null | null |
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