repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 95 | b665c80cdfe7e9c07633c3fdc0694a9303dbed88 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 144 | 8 | assert | test_get_all_parameters | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pickle
import logging
import pytest
import numpy as np
from ..parameters import (Parameter, DeprecatedParameter, HideParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test m... | p2.keys() | added | 8c6b217c58eb0aa47665290d1c3ac5be782c3b7854c30d8097a12f03099a620d | assert|test_get_all_parameters|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pickle import logging import pytest import numpy as np from ..parameters import (Parameter, DeprecatedParameter, HideParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing... | null | null | null |
zwicker-group/py-pde | train | 95 | b665c80cdfe7e9c07633c3fdc0694a9303dbed88 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 171 | 4 | assert | test_convert_default_values | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pickle
import logging
import pytest
import numpy as np
from ..parameters import (Parameter, DeprecatedParameter, HideParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test m... | caplog.text | modified | 65d58e206f387054857182c9e2e3aa7da57ee9777f0ac798d14c64fdd996ec4d | assert|test_convert_default_values|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pickle import logging import pytest import numpy as np from ..parameters import (Parameter, DeprecatedParameter, HideParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mi... | caplog.text | 170 | 4 |
zwicker-group/py-pde | train | 96 | 4112863d61199fbb06a86e5274f27c9f29240cae | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 206 | 4 | assert | test_expression_from_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | ScalarExpression(expr) | added | 89e13ea9ab5ebf1738820adf94d076091a865973d997de681e518a8047de6698 | assert|test_expression_from_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert... | null | null | null |
zwicker-group/py-pde | train | 96 | 4112863d61199fbb06a86e5274f27c9f29240cae | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 212 | 4 | assert | test_expression_from_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | ScalarExpression(expr) | added | f14aa5df99b06bbd6181971bc57deba0145d46b4ae8e5320344c133fe26a2cdb | assert|test_expression_from_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert... | null | null | null |
zwicker-group/py-pde | train | 96 | 4112863d61199fbb06a86e5274f27c9f29240cae | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 213 | 4 | assert | test_expression_from_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | ScalarExpression(expr, 'a') | added | aa81d440a6bdf177bfec2e38f29832709837a3220e287a6e6a95ee93100b4a7f | assert|test_expression_from_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert... | null | null | null |
zwicker-group/py-pde | train | 96 | 4112863d61199fbb06a86e5274f27c9f29240cae | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 214 | 9 | pytest.raises | test_expression_from_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | RuntimeError) | added | 25825dda475e081bbe79f3476d292c47084d96adbe4a5b96df32eb06fb1f4f83 | pytest.raises|test_expression_from_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0)... | null | null | null |
zwicker-group/py-pde | train | 97 | daec778ddc9b1b9d57be5bf2f511ec20b40578c6 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 79 | 26 | pytest.approx | test_spherical_polygon_area | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import math
import random
import pytest
import numpy as np
from scipy import spatial, integrate
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radi... | np.pi / 2) | modified | 8e36b0762fd804b5678153367286746037bd80b737e6be05b72ea960366bd367 | pytest.approx|test_spherical_polygon_area|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import math import random import pytest import numpy as np from scipy import spatial, integrate from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for di... | np.pi / 2) | 79 | 26 |
zwicker-group/py-pde | train | 97 | daec778ddc9b1b9d57be5bf2f511ec20b40578c6 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 94 | 4 | assert | test_spherical_voronoi | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import math
import random
import pytest
import numpy as np
from scipy import spatial, integrate
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radi... | pytest.approx(4 * np.pi) | modified | b71c24debaae10780c663be286bf42fdf0c68432d4d693440210df0b17a0729f | assert|test_spherical_voronoi|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import math import random import pytest import numpy as np from scipy import spatial, integrate from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in [1, 2, ... | pytest.approx(4 * np.pi) | 94 | 4 |
zwicker-group/py-pde | train | 97 | daec778ddc9b1b9d57be5bf2f511ec20b40578c6 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 122 | 4 | assert | test_points_on_sphere_2 | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import math
import random
import pytest
import numpy as np
from scipy import spatial, integrate
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radi... | pytest.approx(2 * np.pi) | modified | bcd29312689b7385f2378120ad29e54a1fa15db558e92e5ea21578ee83912a7f | assert|test_points_on_sphere_2|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import math import random import pytest import numpy as np from scipy import spatial, integrate from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in [1, 2,... | pytest.approx(2 * np.pi) | 122 | 4 |
zwicker-group/py-pde | train | 97 | daec778ddc9b1b9d57be5bf2f511ec20b40578c6 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 172 | 16 | assert | test_spherical_harmonics_real | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import math
import random
import pytest
import numpy as np
from scipy import spatial, integrate
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radi... | pytest.approx(1) | modified | cbf295c4fe47c2aedb6b39a0c31920933da576154a9013b079b383ee7958b5f1 | assert|test_spherical_harmonics_real|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import math import random import pytest import numpy as np from scipy import spatial, integrate from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in ... | pytest.approx(1) | 172 | 16 |
zwicker-group/py-pde | train | 98 | 61cb359f83f7c004dae416c9f00465bda6025294 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 118 | 8 | assert_* | test_trackers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers im... | state.integral) | modified | c3377b359e0fee61108daa60ed1a3b721851306895bd7e995e56a4c834de4995 | assert_*|test_trackers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPD... | state.integral) | 117 | 8 |
zwicker-group/py-pde | train | 98 | 61cb359f83f7c004dae416c9f00465bda6025294 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 144 | 4 | assert_* | test_callback_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers im... | data_tracker.data) | modified | 847189d0937b9eac937abcb6a9b10322afe90c3c81f167b9b6494ad5bb4bb469 | assert_*|test_callback_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, All... | data_tracker.data) | 143 | 4 |
zwicker-group/py-pde | train | 98 | 61cb359f83f7c004dae416c9f00465bda6025294 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 183 | 4 | assert | test_data_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers im... | isinstance(data, list) | modified | e34da1995e0783f0133e56eccb4834fb8cab483c6c7f2090365ae243281f0b1d | assert|test_data_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahn... | isinstance(data, list) | 182 | 4 |
zwicker-group/py-pde | train | 98 | 61cb359f83f7c004dae416c9f00465bda6025294 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 230 | 4 | assert | test_consistency_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers im... | con.info['t_end'] | modified | 57096b4eb3856f616b3e6934de541e495feede26842efddd8f986f40d1842a1c | assert|test_consistency_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, Al... | con.info['t_end'] | 229 | 4 |
zwicker-group/py-pde | train | 99 | 4643b2cc6a9590d07de6374f4f2054d7dd5f99bb | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 62 | 4 | assert | test_collections | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | (2, 3, 4) | modified | 5d5b71f7a4724cfd4ce8769d242ce02f0e0268da66510491ba8580ee9ce379a2 | assert|test_collections|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def test_shapes... | (2, 3, 4) | 61 | 4 |
zwicker-group/py-pde | train | 99 | 4643b2cc6a9590d07de6374f4f2054d7dd5f99bb | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 91 | 4 | assert | test_collections_copy | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | fc2.data | modified | ed605bd08e3695149ca6ce67210a580fd99cef372638cf926cf4dd27b68f0952 | assert|test_collections_copy|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def test_s... | fc2.data | 90 | 4 |
zwicker-group/py-pde | train | 99 | 4643b2cc6a9590d07de6374f4f2054d7dd5f99bb | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 96 | 4 | assert_* | test_collections_copy | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | np.ones(12)) | modified | 7a84135d252b9003e0561698e21182f87e6ae4ebd67e31e2e995c4f4d1a0708b | assert_*|test_collections_copy|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def test... | np.ones(12)) | 95 | 4 |
zwicker-group/py-pde | train | 99 | 4643b2cc6a9590d07de6374f4f2054d7dd5f99bb | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 139 | 8 | assert_* | test_smoothing_collection | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | fields[i].smooth(sgm).data) | modified | c08036c0cbfa96d871ddcd7ae4e3dc5f5397552cfe75bfae730c629077391e29 | assert_*|test_smoothing_collection|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def ... | fields[i].smooth(sgm).data) | 138 | 8 |
zwicker-group/py-pde | train | 100 | 600eb84caf925654b991598201b722ab5f35abf6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 186 | 4 | assert | test_tensor_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | TensorExpression('[[0, 0], [0, 0]]') | modified | 4fbe5fc4ea8d77cbbecaf2d9e91054af6525e9dcc890f209df078d13d4ad5d28 | assert|test_tensor_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_nu... | TensorExpression('[[0, 0], [0, 0]]') | 183 | 4 |
zwicker-group/py-pde | train | 100 | 600eb84caf925654b991598201b722ab5f35abf6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 187 | 4 | assert_* | test_tensor_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | np.arange(4).reshape(2, 2)) | modified | c8cfde44b536cb31386827329c54722aae4bc03716befcae14f3b1d78ac491e9 | assert_*|test_tensor_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_... | np.arange(4).reshape(2, 2)) | 184 | 4 |
zwicker-group/py-pde | train | 100 | 600eb84caf925654b991598201b722ab5f35abf6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 215 | 4 | assert | test_expression_from_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | ScalarExpression(expr, ['a', 'b']) | modified | ac68b038b64d9f5d79929180e4dc8609fa79239bc8a4d4433caedf0a2c3e25f5 | assert|test_expression_from_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert... | ScalarExpression(expr, 'a') | 213 | 4 |
zwicker-group/py-pde | train | 100 | 600eb84caf925654b991598201b722ab5f35abf6 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 220 | 4 | assert | test_expression_from_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | ScalarExpression(expr) | added | 81e59e21825f199a96aa05d3ff4bb4927fc7af60fc111aa7f6024ac5f8a59b7d | assert|test_expression_from_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert... | null | null | null |
zwicker-group/py-pde | train | 102 | 4dfc0b0fbff3bef015e5ba249defe6806487bda1 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 151 | 4 | assert | test_scalar_random_uniform | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | grid | added | a16d5647c5a8c41a52d06a306e1ea787ffb6e7ef04e1198a110fdc95302ae393 | assert|test_scalar_random_uniform|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def t... | null | null | null |
zwicker-group/py-pde | train | 102 | 4dfc0b0fbff3bef015e5ba249defe6806487bda1 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 152 | 4 | assert | test_scalar_random_uniform | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | grid | added | 4ac412c49ba076702c51c65d8f6c564c1ba6a61097a034c8502723830004afe9 | assert|test_scalar_random_uniform|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def t... | null | null | null |
zwicker-group/py-pde | train | 102 | 4dfc0b0fbff3bef015e5ba249defe6806487bda1 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 153 | 4 | assert | test_scalar_random_uniform | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | not np.allclose(fc[0].data, fc[1].data) | added | 5a0be53732d18d20761b8039033e97f328f1efda04996d0449037eec9eff037b | assert|test_scalar_random_uniform|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def t... | null | null | null |
zwicker-group/py-pde | train | 103 | 3df2ca9822710815ead72aa9ada7ac151a901ef6 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 168 | 4 | assert | test_from_scalar_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | grid | added | 8bc25533687cf5f7e219bbbe281db459dc21f056322d83b668fe40a81c89b720 | assert|test_from_scalar_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def... | null | null | null |
zwicker-group/py-pde | train | 103 | 3df2ca9822710815ead72aa9ada7ac151a901ef6 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 169 | 4 | assert | test_from_scalar_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | grid | added | 9a68c225f933b16936e886b3ce4a1c4a247f7f599f8631f7de782823d123d7c8 | assert|test_from_scalar_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def... | null | null | null |
zwicker-group/py-pde | train | 103 | 3df2ca9822710815ead72aa9ada7ac151a901ef6 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 170 | 4 | assert_* | test_from_scalar_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | (np.arange(3) + 0.5)**2) | added | 9726d87d75fcb2802a8299b03cc92c608ea61452488b50cc8f1d447a3d23d793 | assert_*|test_from_scalar_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid d... | null | null | null |
zwicker-group/py-pde | train | 104 | e24986d5606bf2ba5315e67e2c01b913507f80da | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 49 | 9 | pytest.raises | test_pde_consistency_test | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ... import pdes
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE,
... | AssertionError) | modified | 152d061cdf665853e83b5a9c44c1838445e890382f690e97ef2abe0a5dc057eb | pytest.raises|test_pde_consistency_test|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ... import pdes from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [pdes.KuramotoSivash... | RuntimeError) | 49 | 9 |
zwicker-group/py-pde | train | 105 | 1f197121cebcdb85f231dc5b328191ac8d693529 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 51 | 12 | assert | test_const | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | f._sympy_expr | modified | cffeff521421921d0c06fb8f11d56cac34c6a04778dd4ef1fd59e72b333578aa | assert|test_const|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_number(1.235) ... | f._sympy_expr | 50 | 12 |
zwicker-group/py-pde | train | 105 | 1f197121cebcdb85f231dc5b328191ac8d693529 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 116 | 4 | assert_* | test_two_args | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | [24, 16 * np.log(2)]) | modified | 8f3784743621bed76c1683c706917aa3b3d612b53617d9818604178cf2426952 | assert_*|test_two_args|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_number(1.... | [24, 16 * np.log(2)]) | 115 | 4 |
zwicker-group/py-pde | train | 105 | 1f197121cebcdb85f231dc5b328191ac8d693529 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 173 | 4 | assert | test_synonyms | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | not e.depends_on('all') | modified | c559e690254d823e8e1b14812e1032fc3b974e91cdb286959d9ca62c0be40f80 | assert|test_synonyms|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_number(1.23... | not e.depends_on('all') | 172 | 4 |
zwicker-group/py-pde | train | 105 | 1f197121cebcdb85f231dc5b328191ac8d693529 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 195 | 4 | assert | test_tensor_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | not e.constant | modified | afc2b22df7d19dc81f20ebfbff807a1e27121fc750568683c7dd206f36e3b530 | assert|test_tensor_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_nu... | not e.constant | 194 | 4 |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 90 | 4 | assert | test_collections_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ...grids import UnitGrid
from .. import FieldCollection, ScalarField, Tensor2Field, VectorField
from ..base import FieldBase
from .test_generic import iter_grids
def test_shapes_nfields():
"""... | fc2[1].data | modified | b0d97541d48c1840aaef9a82c7f3c8e844c50e97bbe855ef66d02660cc62b508 | assert|test_collections_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ...grids import UnitGrid from .. import FieldCollection, ScalarField, Tensor2Field, VectorField from ..base import FieldBase from .test_generic import iter_grids def test_s... | fc2[1].data | 93 | 4 |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 282 | 8 | assert | test_interpolation_to_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from ...grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid
from ...grids.cartesian import CartesianGridBase
from ...tools.misc import skipUnlessModule
from .. import ... | pytest.approx(2) | added | b5a53c2b93b9494d75299f0079aeff06d9faf57ef367d55e31cfe5adec1104d4 | assert|test_interpolation_to_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from ...grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid, UnitGrid from ...grids.cartesian import CartesianGridBase from ...tools.misc im... | null | null | null |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 167 | 8 | assert_* | test_divergence | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from ....fields import ScalarField
from ... import CartesianGrid, UnitGrid
from .. import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx="random", periodic="r... | op2(arr)) | added | bfbd880c26b20abb9b1dff12adcd714e31e03f1fbdb26fddc0ceecf1288b5b3b | assert_*|test_divergence|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from ....fields import ScalarField from ... import CartesianGrid, UnitGrid from .. import cartesian as ops π = np.pi def _get_random_grid_bcs(ndim: int, dx="r... | null | null | null |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 45 | 8 | assert_* | test_conservative_laplace_sph | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ....fields import ScalarField, Tensor2Field, VectorField
from ... import CartesianGrid, SphericalGrid
from .. import spherical as ops
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | lap2(f.data)) | added | 29073360577cfa6b28c0af7560e14683b42ba18f13fa90c2c498bb548f03489b | assert_*|test_conservative_laplace_sph|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ....fields import ScalarField, Tensor2Field, VectorField from ... import CartesianGrid, SphericalGrid from .. import spherical as ops def test_findiff_sph(): """ test operator for... | null | null | null |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 41 | 12 | assert_* | test_storage_write | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
from .. import FileStorage, Memor... | np.arange(dim)) | added | c5485d23ebac6a6a2a09f6744eb93fab60cdd30757aa4daaae57b3162109dfb4 | assert_*|test_storage_write|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np from ...fields import FieldCollection, ScalarField, Tensor2Field, VectorField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import module_available from .. ... | null | null | null |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 61 | 4 | assert | test_hybridmethod | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from .. import misc
def test_ensure_directory_exists(tmp_path):
""" tests the ensure_directory_exists function """
# create temporary name
path = tmp_path / "test_ensure_directory_exis... | "class" | modified | dae20a9bfe7a00e91f090b279053b29db03a128865a213e7b8815879841db13f | assert|test_hybridmethod|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from .. import misc def test_ensure_directory_exists(tmp_path): """ tests the ensure_directory_exists function """ # create temporary name path = tmp_path / "test_ensure_direct... | 'class' | 63 | 4 |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/tools/tests/test_numba.py | train | zwicker-group/py-pde:pde/tools/tests/test_numba.py | 12 | 4 | assert | test_environment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from ..numba import flat_idx, jit_allocate_out, numba_environment
def test_environment():
""" test function signature checks """
assert | isinstance(numba_environment(), dict) | added | b90add7f14de51ae909f788260ec901ed53401a05e687df5800bbe380e01d268 | assert|test_environment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from ..numba import flat_idx, jit_allocate_out, numba_environment def test_environment(): """ test function signature checks """ assert | null | null | null |
zwicker-group/py-pde | train | 106 | 245fac87e05260dbc8726a4326bc204c73d342c4 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 108 | 8 | assert_* | test_trackers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
from unittest import mock
import numpy as np
import pytest
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from ...solvers import Controller, Explici... | state.integral) | added | 2b199ce842d5c0f4d739592f04c826201a4c50e115e03c0c2d5e3b393bcd90f1 | assert_*|test_trackers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle from unittest import mock import numpy as np import pytest from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from ...solvers import... | null | null | null |
zwicker-group/py-pde | train | 107 | 2131e21464d8cf6a8b29fd552c939531e9fb13b2 | train | tests/performance_boundaries.py | train | zwicker-group/py-pde:tests/performance_boundaries.py | 44 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of different boundary conditions
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import numpy as np
from pde import UnitGrid, ScalarField
from pde.grids.bo... | result) | modified | 098120af5605db06731c6aa12c53910bba15fed12a41805f50d82c5d12909819 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of different boundary conditions """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) import numpy as np from pde import UnitGrid, ScalarField from pde.gr... | result) | 45 | 12 | |
zwicker-group/py-pde | train | 107 | 2131e21464d8cf6a8b29fd552c939531e9fb13b2 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 186 | 16 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | added | a4190db934504744441c7556dc99c95b83fa9b17f6b3d607f646afa3501d0ec0 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | null | null | null | |
zwicker-group/py-pde | train | 107 | 2131e21464d8cf6a8b29fd552c939531e9fb13b2 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 208 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | added | 604bc3efaeca70300bdd60ce91fe703a0d0023e32c5738489e4acc0393f0ca56 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | null | null | null | |
zwicker-group/py-pde | train | 108 | ffdb87e4d1e4b8e81a332a8fb8cf93440c210844 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 208 | 4 | assert | test_consistency_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
from unittest import mock
import numpy as np
import pytest
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from ...solvers import Controller, Explici... | con.info["t_end"] | modified | bb7fdb24e783a6bf18cc834cc3b798b6f9c97f6ba702de523dedae6dc1841e34 | assert|test_consistency_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle from unittest import mock import numpy as np import pytest from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from ...solve... | con.info["t_end"] | 208 | 4 |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 88 | 4 | assert | test_scalars | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, PolarGrid, UnitGrid
from ...grids.boundaries import DomainError
from ...grids.tests.test_cartesian import _get_cartesian_grid
from ...tools.misc import module_available, skipUnlessModul... | s3.grid | added | 25d1d5265547f1b853482fea88f146abb120300f8177474a76fb47bd905ec0c8 | assert|test_scalars|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, PolarGrid, UnitGrid from ...grids.boundaries import DomainError from ...grids.tests.test_cartesian import _get_cartesian_grid from ...tools.misc import module_availabl... | null | null | null |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 261 | 8 | assert | test_slice | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, PolarGrid, UnitGrid
from ...grids.boundaries import DomainError
from ...grids.tests.test_cartesian import _get_cartesian_grid
from ...tools.misc import module_available, skipUnlessModul... | grid.dim | added | 591020b992919fb5f200934cad18470a867bc21679db88d0c8072cb4f80ad6ad | assert|test_slice|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, PolarGrid, UnitGrid from ...grids.boundaries import DomainError from ...grids.tests.test_cartesian import _get_cartesian_grid from ...tools.misc import module_available,... | null | null | null |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/fields/tests/test_tensorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_tensorial.py | 87 | 4 | assert_* | test_tensor_symmetrize | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ..base import FieldBase
from ..tensorial import Tensor2Field
from .test_generic import iter_grids
def test_tensors():
""" test some tensor calculations """
grid ... | ts.data) | modified | efee9f1148b2d809d125aa4d35d29bec1ebd043f49c34722e03acab74d2de6b0 | assert_*|test_tensor_symmetrize|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ..base import FieldBase from ..tensorial import Tensor2Field from .test_generic import iter_grids def test_tensors(): """ test some tensor ca... | t2_trans.data) | 90 | 4 |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/fields/tests/test_tensorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_tensorial.py | 111 | 4 | assert_* | test_add_interpolated_tensor | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ..base import FieldBase
from ..tensorial import Tensor2Field
from .test_generic import iter_grids
def test_tensors():
""" test some tensor calculations """
grid ... | a / grid.cell_volumes[c]) | modified | 85b5dc8aa4fadd5db39821ca4087e4f82647d1b72e22fbfcf18bd140987d2f6f | assert_*|test_add_interpolated_tensor|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ..base import FieldBase from ..tensorial import Tensor2Field from .test_generic import iter_grids def test_tensors(): """ test some ten... | 2 * a) | 110 | 4 |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 159 | 4 | assert_* | test_from_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ...tools.misc import module_available
from ..base import FieldBase
from ..tensorial import Tensor2Field
from ..vectorial import VectorField
def test_vectors():
""" t... | xs ** 2) | added | 88346686404555f565d95edacf3cc31a4234a42ccafd80e02249462ec6ea6b29 | assert_*|test_from_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ...tools.misc import module_available from ..base import FieldBase from ..tensorial import Tensor2Field from ..vectorial import VectorField de... | null | null | null |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 190 | 8 | assert_* | test_boundary_interpolation_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...grids import CartesianGrid, UnitGrid
from ...tools.misc import module_available
from ..base import FieldBase
from ..tensorial import Tensor2Field
from ..vectorial import VectorField
def test_vectors():
""" t... | bndry_val) | added | f06431784d55fe8c1dcca66a41399d56a5e747aed34b6eae19bd9a5d9261b6fc | assert_*|test_boundary_interpolation_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...grids import CartesianGrid, UnitGrid from ...tools.misc import module_available from ..base import FieldBase from ..tensorial import Tensor2Field from ..vectorial import V... | null | null | null |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 150 | 8 | assert | test_get_all_parameters | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
)
def test_parameters():
""" test mixin... | p2.keys() | added | 64b606c6a747b408dc233cb3f057878724fe44ffe82c16926f948293fc3bfb26 | assert|test_get_all_parameters|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, ) def test_parameters(): """ test mix... | null | null | null |
zwicker-group/py-pde | train | 109 | e75b1ba6cfd98baa03fcd05815e54bc1c9bb4149 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 168 | 4 | assert_* | test_convert_default_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
)
def test_parameters():
""" test mixin... | np.arange(3)) | modified | 9a7a958c3cdaf10e4d3cd7e8eb126a753f4fb4a255f79d002da60cc563fa0f23 | assert_*|test_convert_default_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, ) def test_parameters(): """ te... | np.arange(3)) | 167 | 4 |
zwicker-group/py-pde | train | 110 | 24df9a33f938ff812ff8f1bdcddd5f6fddf98851 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 121 | 8 | assert | test_hidden_parameter | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
)
def test_parameters():
""" test mixin... | t_class.get_parameters() | added | f27d409cc638ee293a99fcba28c6d214b08df7703b21c265f442b787bb649168 | assert|test_hidden_parameter|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, ) def test_parameters(): """ test mixin... | null | null | null |
zwicker-group/py-pde | train | 110 | 24df9a33f938ff812ff8f1bdcddd5f6fddf98851 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 125 | 8 | assert | test_hidden_parameter | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
)
def test_parameters():
""" test mixin... | {"a": 1, "b": 2} | added | 9523b866e9b99e4d0a509c13b54f33c76524f686f3bbbd395754812ce2073eda | assert|test_hidden_parameter|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, ) def test_parameters(): """ test mixin... | null | null | null |
zwicker-group/py-pde | train | 110 | 24df9a33f938ff812ff8f1bdcddd5f6fddf98851 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 143 | 8 | assert | test_get_all_parameters | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
)
def test_parameters():
""" test mixin... | p2.keys() | added | 4cf660b93b4ce4ce6f98992a3cf7022324f1e1be5d9f1d6e9b165976b1f5abe6 | assert|test_get_all_parameters|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, ) def test_parameters(): """ test mix... | null | null | null |
zwicker-group/py-pde | train | 110 | 24df9a33f938ff812ff8f1bdcddd5f6fddf98851 | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 174 | 4 | assert | test_convert_default_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
)
def test_parameters():
""" test mixin... | caplog.text | added | 94e15fd59f34716d9384a0ab10d5fb9d9dc94f57b7efc6f477489b590983ca3a | assert|test_convert_default_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, ) def test_parameters(): """ test... | null | null | null |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/grids/boundaries/tests/test_axis.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis.py | 48 | 4 | assert | test_boundary_pair | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import pytest
from ... import UnitGrid
from ..axis import BoundaryPair, get_boundary_axis
from ..local import BCBase
def test_boundary_pair():
""" test setting boundary conditions for whole axis """
g = UnitGrid([2, 3])
b ... | bc1[1] | added | 45eaf8d547570eac92a7a5c29727626eae36dd7fcf645cc317b776ac993402fd | assert|test_boundary_pair|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import pytest from ... import UnitGrid from ..axis import BoundaryPair, get_boundary_axis from ..local import BCBase def test_boundary_pair(): """ test setting boundary conditions for whole axis """ g = UnitGrid([... | null | null | null |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/grids/boundaries/tests/test_axis.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis.py | 49 | 4 | assert | test_boundary_pair | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import pytest
from ... import UnitGrid
from ..axis import BoundaryPair, get_boundary_axis
from ..local import BCBase
def test_boundary_pair():
""" test setting boundary conditions for whole axis """
g = UnitGrid([2, 3])
b ... | bc1[True] | added | 6c480b6ca389a741d7d2a7218834b0cbe6b3ac0be1995dc3e4548305c858d245 | assert|test_boundary_pair|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import pytest from ... import UnitGrid from ..axis import BoundaryPair, get_boundary_axis from ..local import BCBase def test_boundary_pair(): """ test setting boundary conditions for whole axis """ g = UnitGrid([... | null | null | null |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/grids/boundaries/tests/test_axis.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis.py | 60 | 12 | assert | test_get_axis_boundaries | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import pytest
from ... import UnitGrid
from ..axis import BoundaryPair, get_boundary_axis
from ..local import BCBase
def test_boundary_pair():
""" test setting boundary conditions for whole axis """
g = UnitGrid([2, 3])
b ... | b.periodic | modified | 231a60468096a1db618e275c5addefdf4641b579dc598e7842d68ee7ad6c9c72 | assert|test_get_axis_boundaries|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import pytest from ... import UnitGrid from ..axis import BoundaryPair, get_boundary_axis from ..local import BCBase def test_boundary_pair(): """ test setting boundary conditions for whole axis """ g = Unit... | 0 | 57 | 12 |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 104 | 4 | assert | test_hdf_write_attributes | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from .. import misc
def test_ensure_directory_exists(tmp_path):
""" tests the ensure_directory_exists function """
# create temporary name
path = tmp_path / "test_ensure_directory_exis... | data2 | added | 2422f1570a830db9eb5e2e369f949d365d7ca57fa38d9ae2759a9564a4da34ce | assert|test_hdf_write_attributes|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from .. import misc def test_ensure_directory_exists(tmp_path): """ tests the ensure_directory_exists function """ # create temporary name path = tmp_path / "test_ensur... | null | null | null |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 110 | 4 | assert | test_hdf_write_attributes | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from .. import misc
def test_ensure_directory_exists(tmp_path):
""" tests the ensure_directory_exists function """
# create temporary name
path = tmp_path / "test_ensure_directory_exis... | {"a": 1} | added | 14371128224214166d1d28bf2695b2d1a67771d8465258bf624245c6f22032bb | assert|test_hdf_write_attributes|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from .. import misc def test_ensure_directory_exists(tmp_path): """ tests the ensure_directory_exists function """ # create temporary name path = tmp_path / "test_ensur... | null | null | null |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/tools/tests/test_output.py | train | zwicker-group/py-pde:pde/tools/tests/test_output.py | 19 | 4 | assert | test_in_jupyter_notebook | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
from .. import output
def test_progress_bars():
""" test progress bars """
for pb_cls in [output.MockProgress, output.get_progress_bar_class()]:
tot = 0
for i in pb_cls(range(4)):
tot += i
assert tot == 6
de... | isinstance(output.in_jupyter_notebook(), bool) | added | 449e0f144c39b43ba80d62c1ace1e28951cb9bd3c5ff6abfdfcab130a2fe7360 | assert|test_in_jupyter_notebook|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ from .. import output def test_progress_bars(): """ test progress bars """ for pb_cls in [output.MockProgress, output.get_progress_bar_class()]: tot = 0 for i in pb_cls(range(4)): tot += i assert tot == 6 def test_in_jupyter... | null | null | null |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 81 | 8 | assert | test_parameters | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_p... | p2.keys() | added | 555658544662016fe506a68b3da11c9f45772bf77195bf8940d204f068d42829 | assert|test_parameters|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, sphinx_display_parameters, ) def test_paramet... | null | null | null |
zwicker-group/py-pde | train | 111 | 0998451abf205aedfabb661a037e79f6355e5afc | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 181 | 4 | assert | test_convert_default_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import pickle
import numpy as np
import pytest
from ..parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_p... | caplog.text | added | b1bde870c70ed753a37c56f2e1a41da762043c29c96bc162d91eb4adfe6f0a94 | assert|test_convert_default_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import pickle import numpy as np import pytest from ..parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, sphinx_display_parameters, ) def ... | null | null | null |
zwicker-group/py-pde | train | 112 | c505abe163f2f3e9c4e004f11c0a69b8d7b9253d | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 51 | 8 | assert | test_serialization | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from ... import grids
from ...tools.misc import skipUnlessModule
from ..base import GridBase, discretize_interval
def iter_grids():
""" generate some test grids """
... | g._cache_hash() | modified | 3a28dc258ea76055e5007a2e86c96216fc98533188b379610cabcc3467e3482d | assert|test_serialization|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from ... import grids from ...tools.misc import skipUnlessModule from ..base import GridBase, discretize_interval def iter_grids(): """ generate som... | g._cache_hash() | 50 | 8 |
zwicker-group/py-pde | train | 112 | c505abe163f2f3e9c4e004f11c0a69b8d7b9253d | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 74 | 8 | assert | test_iter_mirror_points | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from ... import grids
from ...tools.misc import skipUnlessModule
from ..base import GridBase, discretize_interval
def iter_grids():
""" generate some test grids """
... | num_expect | modified | 4f768bc16fc9f06aa25fd1b8fa552742c87280687d199d64b03b3e7ffe2f4f79 | assert|test_iter_mirror_points|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from ... import grids from ...tools.misc import skipUnlessModule from ..base import GridBase, discretize_interval def iter_grids(): """ generat... | num_expect | 73 | 8 |
zwicker-group/py-pde | train | 112 | c505abe163f2f3e9c4e004f11c0a69b8d7b9253d | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 99 | 9 | pytest.raises | test_grid_plotting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from ... import grids
from ...tools.misc import skipUnlessModule
from ..base import GridBase, discretize_interval
def iter_grids():
""" generate some test grids """
... | NotImplementedError) | added | 415f80deb291e7668cf6310c9bbabfea61db0a25ba20af520917b400610fcab2 | pytest.raises|test_grid_plotting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from ... import grids from ...tools.misc import skipUnlessModule from ..base import GridBase, discretize_interval def iter_grids(): """ gener... | null | null | null |
zwicker-group/py-pde | train | 112 | c505abe163f2f3e9c4e004f11c0a69b8d7b9253d | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 114 | 13 | pytest.raises | test_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from ... import grids
from ...tools.misc import skipUnlessModule
from ..base import GridBase, discretize_interval
def iter_grids():
""" generate some test grids """
... | ValueError) | added | 6bc2dd3d833952ab676ce56686ad77003e67d84a3c273918639cabc2fb8d4fa3 | pytest.raises|test_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from ... import grids from ...tools.misc import skipUnlessModule from ..base import GridBase, discretize_interval def iter_grids(): """ generate ... | null | null | null |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 29 | 4 | assert | test_pde_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import pdes
from ...fields import ScalarField
from ...grids import UnitGrid
@pytest.mark.parametrize("dim", [1, 2])
@pytest.mark.parametrize(
"pde_class",
[
pdes.AllenCahnPDE,
pdes.CahnH... | isinstance(repr(eq), str) | added | 87457cd5057ae8911ed6186294fe3ad6fd3e1cf583c55c5c47bc0575545bf286 | assert|test_pde_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import pdes from ...fields import ScalarField from ...grids import UnitGrid @pytest.mark.parametrize("dim", [1, 2]) @pytest.mark.parametrize( "pde_class", [ pdes.AllenCahnPDE, pdes.CahnH... | null | null | null |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 37 | 4 | assert_* | test_pde_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import pdes
from ...fields import ScalarField
from ...grids import UnitGrid
@pytest.mark.parametrize("dim", [1, 2])
@pytest.mark.parametrize(
"pde_class",
[
pdes.AllenCahnPDE,
pdes.CahnH... | rhs(state.data, 0)) | added | bd230468e812f38e56d2b46d0bb05c725f3015af15fd9700d9269181cf9567d8 | assert_*|test_pde_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import pdes from ...fields import ScalarField from ...grids import UnitGrid @pytest.mark.parametrize("dim", [1, 2]) @pytest.mark.parametrize( "pde_class", [ pdes.AllenCahnPDE, pdes.Cah... | null | null | null |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 40 | 4 | assert | test_pde_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import pdes
from ...fields import ScalarField
from ...grids import UnitGrid
@pytest.mark.parametrize("dim", [1, 2])
@pytest.mark.parametrize(
"pde_class",
[
pdes.AllenCahnPDE,
pdes.CahnH... | isinstance(eq.expression, str) | added | b71fc0b21ec83406d3451befaa2b3fe81b48cb82f7e46ea767f788fa7552ac3d | assert|test_pde_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import pdes from ...fields import ScalarField from ...grids import UnitGrid @pytest.mark.parametrize("dim", [1, 2]) @pytest.mark.parametrize( "pde_class", [ pdes.AllenCahnPDE, pdes.CahnH... | null | null | null |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 60 | 9 | pytest.raises | test_pde_consistency_test | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import pdes
from ...fields import ScalarField
from ...grids import UnitGrid
@pytest.mark.parametrize("dim", [1, 2])
@pytest.mark.parametrize(
"pde_class",
[
pdes.AllenCahnPDE,
pdes.CahnH... | AssertionError) | added | 07cbedf907710dfd245267d43a49d4211a4a47ad90a6b686814394685d3f74e3 | pytest.raises|test_pde_consistency_test|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import pdes from ...fields import ScalarField from ...grids import UnitGrid @pytest.mark.parametrize("dim", [1, 2]) @pytest.mark.parametrize( "pde_class", [ pdes.AllenCahnPDE... | null | null | null |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_wave.py | train | zwicker-group/py-pde:pde/pdes/tests/test_wave.py | 17 | 4 | assert | test_wave_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import ScalarField
from ...grids import UnitGrid
from .. import PDE, WavePDE
@pytest.mark.parametrize("dim", [1, 2])
def test_wave_consistency(dim):
""" test some methods of the wave model """
eq ... | isinstance(str(eq), str) | modified | 032d317a307a0ea327354a4c54631ba2dbfce5c45ce6b14d58525593e6ea8b4c | assert|test_wave_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import ScalarField from ...grids import UnitGrid from .. import PDE, WavePDE @pytest.mark.parametrize("dim", [1, 2]) def test_wave_consistency(dim): """ test some methods of the w... | isinstance(str(eq), str) | 17 | 4 |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_wave.py | train | zwicker-group/py-pde:pde/pdes/tests/test_wave.py | 18 | 4 | assert | test_wave_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import ScalarField
from ...grids import UnitGrid
from .. import PDE, WavePDE
@pytest.mark.parametrize("dim", [1, 2])
def test_wave_consistency(dim):
""" test some methods of the wave model """
eq ... | isinstance(repr(eq), str) | added | 59f548f50d5bce2b2d3ea63989e8bf3076038456d3145a56c523c0192564944d | assert|test_wave_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import ScalarField from ...grids import UnitGrid from .. import PDE, WavePDE @pytest.mark.parametrize("dim", [1, 2]) def test_wave_consistency(dim): """ test some methods of the w... | null | null | null |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_wave.py | train | zwicker-group/py-pde:pde/pdes/tests/test_wave.py | 24 | 4 | assert | test_wave_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import ScalarField
from ...grids import UnitGrid
from .. import PDE, WavePDE
@pytest.mark.parametrize("dim", [1, 2])
def test_wave_consistency(dim):
""" test some methods of the wave model """
eq ... | grid | modified | 7feee2751fec1d620b006819587f05d26b3cd8fb1f13d3c397cb4fd3fb7c9ef4 | assert|test_wave_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import ScalarField from ...grids import UnitGrid from .. import PDE, WavePDE @pytest.mark.parametrize("dim", [1, 2]) def test_wave_consistency(dim): """ test some methods of the w... | grid | 23 | 4 |
zwicker-group/py-pde | train | 113 | c547f65da6c4565a0b64c619c331a2bebd6bb443 | train | pde/pdes/tests/test_wave.py | train | zwicker-group/py-pde:pde/pdes/tests/test_wave.py | 31 | 4 | assert_* | test_wave_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import ScalarField
from ...grids import UnitGrid
from .. import PDE, WavePDE
@pytest.mark.parametrize("dim", [1, 2])
def test_wave_consistency(dim):
""" test some methods of the wave model """
eq ... | eq2.evolution_rate(state).data) | added | 3a9a716ed46eb45924dbf8acd4ff50b7aff4a275e738efc22544e51a75541106 | assert_*|test_wave_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import ScalarField from ...grids import UnitGrid from .. import PDE, WavePDE @pytest.mark.parametrize("dim", [1, 2]) def test_wave_consistency(dim): """ test some methods of the... | null | null | null |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_axes.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes.py | 29 | 8 | assert | test_boundaries | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ....fields import ScalarField
from ... import UnitGrid
from ..axes import Boundaries
from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
""" test settin... | Boundaries.from_data(g, [bc_x, bc_y]) | modified | 15d67a944fcb89d0c5961121982b6c7348911f89cf60332edd3963bf5061f41d | assert|test_boundaries|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ....fields import ScalarField from ... import UnitGrid from ..axes import Boundaries from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def test_boundaries(): "... | Boundaries.from_data(g, [bc_x, bc_y]) | 28 | 8 |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_axes.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes.py | 51 | 4 | assert | test_boundary_specifications | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ....fields import ScalarField
from ... import UnitGrid
from ..axes import Boundaries
from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
""" test settin... | Boundaries.from_data(g, ["neumann", "dirichlet"]) | modified | 286d1ef818266d222f646d38a0db54549d048fbef26df930de9fa89bd4016920 | assert|test_boundary_specifications|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ....fields import ScalarField from ... import UnitGrid from ..axes import Boundaries from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def test_bo... | Boundaries.from_data(g, ["neumann", "dirichlet"]) | 50 | 4 |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_axes.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes.py | 78 | 8 | assert | test_natural_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ....fields import ScalarField
from ... import UnitGrid
from ..axes import Boundaries
from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
""" test settin... | isinstance(bc[0], BoundaryPeriodic) | added | f41f6698c4364e1c255bf94ac6a19710e2c912c615770713612d714ec5c5c42f | assert|test_natural_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ....fields import ScalarField from ... import UnitGrid from ..axes import Boundaries from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def tes... | null | null | null |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_axes.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes.py | 80 | 12 | assert | test_natural_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ....fields import ScalarField
from ... import UnitGrid
from ..axes import Boundaries
from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
""" test settin... | BoundaryPair.from_data(g, 1, "value") | added | ffc83696fe477f40655a3881779dc9b6830cf3c16581118b893d28ada15547d0 | assert|test_natural_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ....fields import ScalarField from ... import UnitGrid from ..axes import Boundaries from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def tes... | null | null | null |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 67 | 8 | assert | test_individual_boundaries | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import UnitGrid
from ..local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert i... | isinstance(str(bc), str) | modified | a273b6d141ab6124ad9e532effd7fc106be1aa5c85f828a09baeca958c2111bf | assert|test_individual_boundaries|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import UnitGrid from ..local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0... | isinstance(str(bc), str) | 68 | 8 |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 118 | 4 | assert | test_virtual_points | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import UnitGrid
from ..local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert i... | not bc.value_is_linked | modified | a78d3a0bd5f46d027cff958f2b9fc7bfbd92bef3777831308b3e7cf0ffbd912c | assert|test_virtual_points|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import UnitGrid from ..local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) asser... | not bc.value_is_linked | 119 | 4 |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 161 | 4 | assert | test_virtual_points_linked_data | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import UnitGrid
from ..local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert i... | pytest.approx(6) | modified | 10d7e3ac322cd1a158cfd1ff558545f3c03ed71f3026a0e24ec837c362929c95 | assert|test_virtual_points_linked_data|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import UnitGrid from ..local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [... | pytest.approx(6) | 162 | 4 |
zwicker-group/py-pde | train | 114 | 928bac6350c50550db29e99777d15d0ca04c4f62 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 246 | 4 | assert | test_inhomogeneous_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ... import UnitGrid
from ..local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert i... | pytest.approx(2.5) | modified | f6564a36cb03021918bc4e02ba257a0814bdd074314fbe3e8435eebe6217ca64 | assert|test_inhomogeneous_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ... import UnitGrid from ..local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) as... | pytest.approx(2.5) | 247 | 4 |
zwicker-group/py-pde | train | 115 | ad0f460466c0dc59863c8af893175fa3a9a37c31 | train | pde/grids/boundaries/tests/test_axes.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes.py | 97 | 4 | assert | test_bc_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ....fields import ScalarField
from ... import UnitGrid
from ..axes import Boundaries
from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
""" test settin... | bc[0].low.value == 2 and bc[0].high.value == 3 | added | 8a18febd51a742aa3ea63b23a047e531e1cfba92c596ca3fab21e2a3b55713f5 | assert|test_bc_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ....fields import ScalarField from ... import UnitGrid from ..axes import Boundaries from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def test_boundaries(): ""... | null | null | null |
zwicker-group/py-pde | train | 115 | ad0f460466c0dc59863c8af893175fa3a9a37c31 | train | pde/grids/boundaries/tests/test_axes.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes.py | 99 | 4 | assert | test_bc_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ....fields import ScalarField
from ... import UnitGrid
from ..axes import Boundaries
from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
""" test settin... | bc[0].low.value == 10 and bc[0].high.value == 15 | added | 074b2731cb52ccc214a4c46f075c1677d91e8f64d72b41f9fc70e1886f22b931 | assert|test_bc_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ....fields import ScalarField from ... import UnitGrid from ..axes import Boundaries from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def test_boundaries(): ""... | null | null | null |
zwicker-group/py-pde | train | 115 | ad0f460466c0dc59863c8af893175fa3a9a37c31 | train | pde/grids/boundaries/tests/test_axes.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes.py | 101 | 4 | assert | test_bc_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from ....fields import ScalarField
from ... import UnitGrid
from ..axes import Boundaries
from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
def test_boundaries():
""" test settin... | bc[0].high.value | added | 8e44ce830eb7b5c7699608926ee720b12a71f2ebe8463fb2940b0f796cb62247 | assert|test_bc_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from ....fields import ScalarField from ... import UnitGrid from ..axes import Boundaries from ..axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis def test_boundaries(): ""... | null | null | null |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 356 | 9 | pytest.raises | test_setting_domain_rect | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from .. import CartesianGrid, UnitGrid
from ..boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given dim... | ValueError) | modified | 24bd8a10a5a841871adec4a1c91167dee1b84c64a2e1088a5f564be00d91ac50 | pytest.raises|test_setting_domain_rect|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from .. import CartesianGrid, UnitGrid from ..boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2, periodic=True): """ return a rand... | RuntimeError) | 356 | 9 |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 377 | 4 | assert | test_interpolate_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from .. import CartesianGrid, UnitGrid
from ..boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given dim... | pytest.approx(1) | added | 2c83ef8b72e0820a6efde732aeb2cb586e1159e047062f92f00f389e28862a01 | assert|test_interpolate_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from .. import CartesianGrid, UnitGrid from ..boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian... | null | null | null |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_cylindrical.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical.py | 57 | 4 | assert_* | test_cylindrical_to_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from .. import CylindricalGrid
from ..boundaries.local import NeumannBC
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
grid = CylindricalGrid(4, (-1, 2),... | pf_cart2.data) | modified | 8dcf47326711a9897de052574612c893bd8023d12e509b049e7fe1c3818d3c8a | assert_*|test_cylindrical_to_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from .. import CylindricalGrid from ..boundaries.local import NeumannBC def test_cylindrical_grid(): """ test simple cylindrical grid """ for periodic in [True, False]: grid = Cylindri... | pf_cart2.data) | 56 | 4 |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_cylindrical.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical.py | 69 | 9 | pytest.raises | test_setting_domain_cylindrical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from .. import CylindricalGrid
from ..boundaries.local import NeumannBC
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
grid = CylindricalGrid(4, (-1, 2),... | RuntimeError) | modified | da149feaadb3d6ebe7972081d5971424f51e7c1f30a6b0753345d31baf5637e2 | pytest.raises|test_setting_domain_cylindrical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from .. import CylindricalGrid from ..boundaries.local import NeumannBC def test_cylindrical_grid(): """ test simple cylindrical grid """ for periodic in [True, False]: grid = C... | RuntimeError) | 68 | 9 |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_cylindrical.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical.py | 96 | 4 | assert | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from .. import CylindricalGrid
from ..boundaries.local import NeumannBC
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
grid = CylindricalGrid(4, (-1, 2),... | b_inner | added | 69582810f36096a3a55017626abb2d5b969f849077b28f68c5197c9a324618fb | assert|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from .. import CylindricalGrid from ..boundaries.local import NeumannBC def test_cylindrical_grid(): """ test simple cylindrical grid """ for periodic in [True, False]: grid = Cylindr... | null | null | null |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical.py | 52 | 4 | assert | test_polar_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from .. import PolarGrid, SphericalGrid
from ..boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid])
def test_spherical_base_bcs(grid_class):
""" test setting boundary ... | grid.contains_point(grid.get_random_point()) | modified | 86f36287fdbbeeecebafbc960a09a2e6373cd42ec6d0910425929b076f4dc589 | assert|test_polar_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from .. import PolarGrid, SphericalGrid from ..boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid]) def test_spherical_base_bcs(grid_class): """ test se... | grid.contains_point(grid.get_random_point()) | 54 | 4 |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical.py | 103 | 4 | assert_* | test_polar_to_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from .. import PolarGrid, SphericalGrid
from ..boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid])
def test_spherical_base_bcs(grid_class):
""" test setting boundary ... | pf_cart2.data) | modified | 335b673c59dfa88616b016390fd26c7aadb5745fe76e8ef7a937bd813c744fee | assert_*|test_polar_to_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from .. import PolarGrid, SphericalGrid from ..boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid]) def test_spherical_base_bcs(grid_class): "... | pf_cart2.data) | 105 | 4 |
zwicker-group/py-pde | train | 116 | 39a102883b2ca4303f7a45c23652b3cbd0725295 | train | pde/grids/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical.py | 130 | 4 | assert | test_spherical_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from .. import PolarGrid, SphericalGrid
from ..boundaries.local import NeumannBC
@pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid])
def test_spherical_base_bcs(grid_class):
""" test setting boundary ... | grid.contains_point(grid.get_random_point(3.99)) | modified | efd0b9947c2bae650331d498a97bf33ea3f0182523af8d3ff2be2fb5a70209d7 | assert|test_spherical_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from .. import PolarGrid, SphericalGrid from ..boundaries.local import NeumannBC @pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid]) def test_spherical_base_bcs(grid_class): """ tes... | grid.contains_point(grid.get_random_point(3.99)) | 132 | 4 |
zwicker-group/py-pde | train | 117 | f6101a08b326ecdad355b3878b8aec4807d8373b | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 298 | 4 | assert | test_degenerated_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from ....fields import ScalarField
from ... import CartesianGrid, UnitGrid
from .. import cartesian as ops
π = np.pi
def _get_random_grid_bcs(ndim: int, dx="random", periodic="r... | g2.shape | modified | 4678d35a3a997a723934a4b478e6de0a5f48fbad8bee8c9490ba9e8458e52e28 | assert|test_degenerated_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from ....fields import ScalarField from ... import CartesianGrid, UnitGrid from .. import cartesian as ops π = np.pi def _get_random_grid_bcs(ndim: int, d... | g2.shape | 298 | 4 |
zwicker-group/py-pde | train | 117 | f6101a08b326ecdad355b3878b8aec4807d8373b | train | pde/grids/operators/tests/test_cylindrical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cylindrical.py | 128 | 4 | assert_* | test_gradient_squared | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from ....fields import ScalarField, VectorField
from ... import CartesianGrid, CylindricalGrid
from .. import cylindrical as ops
def test_laplace_cyl():
""" test the implementation of the laplace operator """
for boundary_z i... | s2.data) | modified | 3e1579387f3d2cfe85c5d31b78523582da8035395d7d95f68b2f884b1b6ae581 | assert_*|test_gradient_squared|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from ....fields import ScalarField, VectorField from ... import CartesianGrid, CylindricalGrid from .. import cylindrical as ops def test_laplace_cyl(): """ test the implementation of the laplace operator "... | s2.data) | 128 | 4 |
zwicker-group/py-pde | train | 117 | f6101a08b326ecdad355b3878b8aec4807d8373b | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 344 | 9 | pytest.raises | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from .. import CartesianGrid, UnitGrid
from ..boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given dim... | PeriodicityError) | modified | b63e77375559582be8e57421f1daf565913a9dd6a6dd5aef20d40a3a389d09af | pytest.raises|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from .. import CartesianGrid, UnitGrid from ..boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2, periodic=True): """ retur... | PeriodicityError) | 344 | 9 |
zwicker-group/py-pde | train | 117 | f6101a08b326ecdad355b3878b8aec4807d8373b | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 130 | 4 | assert | test_appending | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
from .. import FileStorage
@skipUnlessModule("h5py")
@pytest.mark.parametrize("... | "writing" | modified | 2d0bd2bf36639400df64cdc6c2591bb5409f736fd2d5cf77bc642228cb0579f3 | assert|test_appending|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...tools.misc import skipUnlessModule from .. import FileStorage @skipUnlessModule("h5py") @pytest.... | "writing" | 130 | 4 |
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