repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 49 | 7c5937c47da1ae57694125b03f75ed3c940eacdd | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 39 | 4 | assert | test_plot_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import tempfile
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
fr... | output_file.exists() | modified | 6f3fbf362da3e936a2a5dd8645d64d5441c6c43577cbb483392d110596344e35 | assert|test_plot_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import tempfile import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHillia... | output_file.exists() | 37 | 4 |
zwicker-group/py-pde | train | 49 | 7c5937c47da1ae57694125b03f75ed3c940eacdd | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 98 | 8 | assert_* | test_trackers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import tempfile
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
fr... | state.integral) | modified | 7f52c143223e13ff8ba369b27058b4806201fde3d80c65c4e19b019ca0a4a79b | assert_*|test_trackers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import tempfile import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliard... | state.integral) | 96 | 8 |
zwicker-group/py-pde | train | 49 | 7c5937c47da1ae57694125b03f75ed3c940eacdd | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 124 | 4 | assert_* | test_callback_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import tempfile
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
fr... | data_tracker.data) | modified | 8e8c8fe3222df0e26c3856a4cab153a1b0df2378ba7c082ac82b0b826784a585 | assert_*|test_callback_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import tempfile import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, Cahn... | data_tracker.data) | 122 | 4 |
zwicker-group/py-pde | train | 49 | 7c5937c47da1ae57694125b03f75ed3c940eacdd | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 209 | 4 | assert | test_consistency_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import tempfile
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
fr... | con.info['t_end'] | added | eed8457f1ecea2beabc4a646386db5c094175388a090f974a951b23a3581d539 | assert|test_consistency_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import tempfile import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, Cah... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 75 | 9 | pytest.raises | test_collections | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | KeyError) | added | d28cde876af34512be81fa13cde66a873ae5e177aad9d873395ee848128d91da | pytest.raises|test_collections|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def test... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/fields/tests/test_collection.py | train | zwicker-group/py-pde:pde/fields/tests/test_collection.py | 92 | 4 | assert | test_collections_copy | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from .test_generic import iter_grids
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import UnitGrid
def test_shapes_nfields():
""... | fc2[1].data | added | 16e356b4faa653901218e01f06c8f465e0e798de5e0e9a321550034afe396093 | assert|test_collections_copy|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from .test_generic import iter_grids from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import UnitGrid def test_s... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 314 | 4 | assert_* | test_poisson_solver_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ... | 1 + 0.5 * xs**2) | added | 2e8bbf1a9a42b1adf7daa6058c815b96edbe9fab5e73bf8d37c6596f009c398b | assert_*|test_poisson_solver_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.bounda... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 337 | 4 | assert_* | test_poisson_solver_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ... | expect) | added | 9af353170f7cff004541b9ee8647b232719d9fd486976b7cd0242588345f8a96 | assert_*|test_poisson_solver_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.bounda... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/fields/tests/test_tensorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_tensorial.py | 128 | 4 | assert_* | test_tensor_invariants | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..tensorial import Tensor2Field
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
def test_tensors():
""" test some tensor calculations """
grid... | f.to_scalar('invariant3').data) | added | 39441d6e94138f45290a5c5fbce982ce3210c97f87b4e5615c38b224de2b121b | assert_*|test_tensor_invariants|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..tensorial import Tensor2Field from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid def test_tensors(): """ test some tensor ca... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 73 | 4 | assert | test_divergence | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | (16, 16) | added | df6fb60d71f7a79b27fddf29c5b344e850e0ccfd5f1ec3dd4de9887bc4509997 | assert|test_divergence|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some vector fields... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 135 | 9 | pytest.raises | test_from_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | ValueError) | added | 0d1e1f8106d33d069f5236f65af4a4431d98a674389f70527a74c59f5bf02e3d | pytest.raises|test_from_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some ... | null | null | null |
zwicker-group/py-pde | train | 50 | 303034781ddb43f2c84d29d6a135b4aebb15219f | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 91 | 4 | assert | test_simulation_persistence | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
... | (3,) + state.data.shape | modified | 22ae25259b4302915eb1908f2d82e11134636f9d31c904bf6caaafb19a860b94 | assert|test_simulation_persistence|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...tools.misc import skipUnlessModule @skip... | (3,) + state.data.shape | 92 | 4 |
zwicker-group/py-pde | train | 51 | 0acc4ab34303cc237b19d17f1f4ba02794e5d417 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 26 | 9 | pytest.raises | test_pde_wrong_input | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import PDE, SwiftHohenbergPDE
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, FieldCollection
from ...grids.tests.test_generic import iter_grids
def test_pde_wrong_input():
"""... | ValueError) | added | 7db25a5bed94d73b3f80309408f8e15ef1153b89cc06aef5370dd70ec3049b38 | pytest.raises|test_pde_wrong_input|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import PDE, SwiftHohenbergPDE from ...grids import UnitGrid from ...fields import ScalarField, VectorField, FieldCollection from ...grids.tests.test_generic import iter_grids def t... | null | null | null |
zwicker-group/py-pde | train | 51 | 0acc4ab34303cc237b19d17f1f4ba02794e5d417 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 41 | 4 | assert_* | test_pde_scalar | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import PDE, SwiftHohenbergPDE
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, FieldCollection
from ...grids.tests.test_generic import iter_grids
def test_pde_wrong_input():
"""... | res_b.data) | added | 512149a630586dd3aad2a5fa4946dda10002a0cb6f88b36d7aed6f5df37e5f35 | assert_*|test_pde_scalar|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import PDE, SwiftHohenbergPDE from ...grids import UnitGrid from ...fields import ScalarField, VectorField, FieldCollection from ...grids.tests.test_generic import iter_grids def test_pde_wr... | null | null | null |
zwicker-group/py-pde | train | 51 | 0acc4ab34303cc237b19d17f1f4ba02794e5d417 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 55 | 4 | assert_* | test_pde_vector | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import PDE, SwiftHohenbergPDE
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, FieldCollection
from ...grids.tests.test_generic import iter_grids
def test_pde_wrong_input():
"""... | res_b.data) | added | b6a733e52f45fbfb2e8b990f3cffbe52bc6209ec5affb1ea8b2b209c6ede296b | assert_*|test_pde_vector|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import PDE, SwiftHohenbergPDE from ...grids import UnitGrid from ...fields import ScalarField, VectorField, FieldCollection from ...grids.tests.test_generic import iter_grids def test_pde_wr... | null | null | null |
zwicker-group/py-pde | train | 51 | 0acc4ab34303cc237b19d17f1f4ba02794e5d417 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 85 | 4 | assert_* | test_pde_vector_scalar | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import PDE, SwiftHohenbergPDE
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, FieldCollection
from ...grids.tests.test_generic import iter_grids
def test_pde_wrong_input():
"""... | res_b.data) | added | 754958b0f48630b6feea25c2e7c568ba5bf3346c01b6959d3c90ef64dd9e56a1 | assert_*|test_pde_vector_scalar|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import PDE, SwiftHohenbergPDE from ...grids import UnitGrid from ...fields import ScalarField, VectorField, FieldCollection from ...grids.tests.test_generic import iter_grids def test... | null | null | null |
zwicker-group/py-pde | train | 52 | aab756d6d8666f1de0560d4e3b21dcdd83e6ac23 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 21 | 4 | assert | test_parse_number | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | pytest.approx(3.2**4.5) | modified | b281c6cfb51a57610bae3fe88527e04da01384155653acea7be4ccb9dc52f861 | assert|test_parse_number|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_number(... | pytest.approx(3.2**4.5) | 21 | 4 |
zwicker-group/py-pde | train | 52 | aab756d6d8666f1de0560d4e3b21dcdd83e6ac23 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 32 | 8 | assert | test_const | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | e.constant | modified | 265976082a7442851000704ba3ff457cb84a456ae401f6eb8a61a738ed73fe93 | assert|test_const|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_number(1.235) ... | e.constant | 32 | 8 |
zwicker-group/py-pde | train | 52 | aab756d6d8666f1de0560d4e3b21dcdd83e6ac23 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 155 | 41 | pytest.approx | test_indexed | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | 32*np.log(4)) | modified | 48a55c813a199fcf8a6c86c3a2637a9901307ab6e626554f4be11683ea6881de | pytest.approx|test_indexed|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_numbe... | 32*np.log(4)) | 155 | 41 |
zwicker-group/py-pde | train | 52 | aab756d6d8666f1de0560d4e3b21dcdd83e6ac23 | train | pde/tools/tests/test_expressions.py | train | zwicker-group/py-pde:pde/tools/tests/test_expressions.py | 183 | 4 | assert | test_tensor_expression | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ..expressions import parse_number, ScalarExpression, TensorExpression
def test_parse_number():
""" test parse_number function """
assert parse_number(0) == pytest.approx(0)
assert parse_number(1.235) =... | isinstance(str(e), str) | modified | 8b6d2b8c012e20db0b48695c748f3e7e713455fde98d9a46b0f893f803f5e0ff | assert|test_tensor_expression|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ..expressions import parse_number, ScalarExpression, TensorExpression def test_parse_number(): """ test parse_number function """ assert parse_number(0) == pytest.approx(0) assert parse_nu... | isinstance(str(e), str) | 183 | 4 |
zwicker-group/py-pde | train | 53 | 3bd7239ca922a79c21cdcb30a85c6e3385b3344f | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 26 | 4 | assert | test_ensure_directory_exists | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
import json
import tempfile
import pytest
import numpy as np
from .. import misc
def test_ensure_directory_exists():
""" tests the ensure_directory_exists function """
# create temporary name
path = tempfile.mktemp()
assert ... | os.path.exists(path) | modified | 9118406ab6460f4b803b09e0ac249c7f4b3872cf9d2a1623cd1649457f4c8ce8 | assert|test_ensure_directory_exists|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os import json import tempfile import pytest import numpy as np from .. import misc def test_ensure_directory_exists(): """ tests the ensure_directory_exists function """ # create temporary name path = tempfile.mk... | os.path.exists(path) | 24 | 4 |
zwicker-group/py-pde | train | 53 | 3bd7239ca922a79c21cdcb30a85c6e3385b3344f | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 49 | 4 | assert_* | test_preserve_scalars | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
import json
import tempfile
import pytest
import numpy as np
from .. import misc
def test_ensure_directory_exists():
""" tests the ensure_directory_exists function """
# create temporary name
path = tempfile.mktemp()
assert ... | np.full(2, 2)) | modified | e5bc192662c648b58430ace74a2ddd018b6f146cc53c9046e6a79b40df4fa2c2 | assert_*|test_preserve_scalars|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os import json import tempfile import pytest import numpy as np from .. import misc def test_ensure_directory_exists(): """ tests the ensure_directory_exists function """ # create temporary name path = tempfile.mktemp(... | np.full(2, 2)) | 47 | 4 |
zwicker-group/py-pde | train | 53 | 3bd7239ca922a79c21cdcb30a85c6e3385b3344f | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 65 | 4 | assert | test_hybridmethod | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
import json
import tempfile
import pytest
import numpy as np
from .. import misc
def test_ensure_directory_exists():
""" tests the ensure_directory_exists function """
# create temporary name
path = tempfile.mktemp()
assert ... | 'instance' | modified | 7883063463d8d778982f116c5a82fee646c2d97f6149e5fbb0054ade061aa535 | assert|test_hybridmethod|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os import json import tempfile import pytest import numpy as np from .. import misc def test_ensure_directory_exists(): """ tests the ensure_directory_exists function """ # create temporary name path = tempfile.mktemp() asse... | 'instance' | 63 | 4 |
zwicker-group/py-pde | train | 53 | 3bd7239ca922a79c21cdcb30a85c6e3385b3344f | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 77 | 4 | assert | test_estimate_computation_speed | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
import json
import tempfile
import pytest
import numpy as np
from .. import misc
def test_ensure_directory_exists():
""" tests the ensure_directory_exists function """
# create temporary name
path = tempfile.mktemp()
assert ... | misc.estimate_computation_speed(g, 1) | modified | e3ee1f731e44f6b33bc65052756d085aaafc06ad9f84274f67354d13ce8029a6 | assert|test_estimate_computation_speed|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os import json import tempfile import pytest import numpy as np from .. import misc def test_ensure_directory_exists(): """ tests the ensure_directory_exists function """ # create temporary name path = tempfile... | misc.estimate_computation_speed(g, 1) | 75 | 4 |
zwicker-group/py-pde | train | 55 | 0596b15f95775668451c5732163cbe3c5f8c358b | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 136 | 9 | pytest.raises | test_from_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | ValueError) | modified | 4b516cfd6146cb9f1de4fd76e82cb89da88d93d07a476d5190e7e4f9b88c704f | pytest.raises|test_from_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some ... | ValueError) | 133 | 9 |
zwicker-group/py-pde | train | 55 | 0596b15f95775668451c5732163cbe3c5f8c358b | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 138 | 9 | pytest.raises | test_from_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | ValueError) | modified | 1e08927f5b02d7e36d8a43d0a509877c580bc9e2aa5f14d1416ba839e4adc17b | pytest.raises|test_from_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some ... | ValueError) | 135 | 9 |
zwicker-group/py-pde | train | 55 | 0596b15f95775668451c5732163cbe3c5f8c358b | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 140 | 9 | pytest.raises | test_from_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | ValueError) | modified | 5ca6376d722fa38b7e20c7d436033ffe42534636844bb74acace543495471080 | pytest.raises|test_from_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some ... | ValueError) | 137 | 9 |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 300 | 4 | assert_* | test_poisson_solver_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ... | grid.axes_coords[0] - 1) | modified | 991b9a995550ddd15728a691d37f47a641bf30d896efa86a8c398c9138d22aa7 | assert_*|test_poisson_solver_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.bounda... | grid.axes_coords[0] - 1) | 299 | 4 |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 303 | 4 | assert_* | test_poisson_solver_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ... | grid.axes_coords[0] - 1) | modified | ad072ba1da162d07e2d41e8b544cd999882baa3bf46aa1f3e05644788cdc5a6d | assert_*|test_poisson_solver_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.bounda... | grid.axes_coords[0] - 1) | 302 | 4 |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 319 | 9 | pytest.raises | test_poisson_solver_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ... | RuntimeError, match='Neumann') | modified | 1a0bda67f83497cd1927166519bde7cc662a565e4ba2b3cfe89e1dc5190bf725 | pytest.raises|test_poisson_solver_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.b... | RuntimeError, match='Neumann') | 318 | 9 |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 339 | 4 | assert_* | test_poisson_solver_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ... | expect) | modified | cca6e06b347bec6b016293fb236198d40a3b1dd4f12a065134eec15480dff30e | assert_*|test_poisson_solver_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.bounda... | expect) | 337 | 4 |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/pdes/tests/test_laplace.py | train | zwicker-group/py-pde:pde/pdes/tests/test_laplace.py | 19 | 4 | assert_* | test_pde_poisson_solver_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ... import UnitGrid, CartesianGrid, ScalarField
from .. import solve_laplace_equation, solve_poisson_equation
def test_pde_poisson_solver_1d():
""" test the poisson solver on 1d grids """
# solve Laplace'... | grid.axes_coords[0] - 1) | added | c76f360982a44751b0a22797c00b5e3c50d58db0c1fad6739e0b8153bd5ba5da | assert_*|test_pde_poisson_solver_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ... import UnitGrid, CartesianGrid, ScalarField from .. import solve_laplace_equation, solve_poisson_equation def test_pde_poisson_solver_1d(): """ test the poisson solver on 1d grid... | null | null | null |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/pdes/tests/test_laplace.py | train | zwicker-group/py-pde:pde/pdes/tests/test_laplace.py | 33 | 4 | assert_* | test_pde_poisson_solver_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ... import UnitGrid, CartesianGrid, ScalarField
from .. import solve_laplace_equation, solve_poisson_equation
def test_pde_poisson_solver_1d():
""" test the poisson solver on 1d grids """
# solve Laplace'... | 1 + 0.5 * xs**2) | added | f55bcf11247d4b0aa77e59ec9bb5c288d174e3acde4a3c914f10bf29919e5712 | assert_*|test_pde_poisson_solver_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ... import UnitGrid, CartesianGrid, ScalarField from .. import solve_laplace_equation, solve_poisson_equation def test_pde_poisson_solver_1d(): """ test the poisson solver on 1d grid... | null | null | null |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/pdes/tests/test_laplace.py | train | zwicker-group/py-pde:pde/pdes/tests/test_laplace.py | 37 | 9 | pytest.raises | test_pde_poisson_solver_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ... import UnitGrid, CartesianGrid, ScalarField
from .. import solve_laplace_equation, solve_poisson_equation
def test_pde_poisson_solver_1d():
""" test the poisson solver on 1d grids """
# solve Laplace'... | RuntimeError, match='Neumann') | added | 4e8bf3961c285315f929a67cf406446c446d2177f1c5451d10e62037407a2035 | pytest.raises|test_pde_poisson_solver_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ... import UnitGrid, CartesianGrid, ScalarField from .. import solve_laplace_equation, solve_poisson_equation def test_pde_poisson_solver_1d(): """ test the poisson solver on 1d... | null | null | null |
zwicker-group/py-pde | train | 56 | 2d51be5e115df59cb5d92e0956ecd46b5f7b4d33 | train | pde/pdes/tests/test_laplace.py | train | zwicker-group/py-pde:pde/pdes/tests/test_laplace.py | 55 | 4 | assert_* | test_pde_poisson_solver_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ... import UnitGrid, CartesianGrid, ScalarField
from .. import solve_laplace_equation, solve_poisson_equation
def test_pde_poisson_solver_1d():
""" test the poisson solver on 1d grids """
# solve Laplace'... | expect) | added | 053a6a84e460d1248fa2a5bc5bfe998861c4ab63697dd1e1c7cedffdd9835ecf | assert_*|test_pde_poisson_solver_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ... import UnitGrid, CartesianGrid, ScalarField from .. import solve_laplace_equation, solve_poisson_equation def test_pde_poisson_solver_1d(): """ test the poisson solver on 1d grid... | null | null | null |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 176 | 4 | assert | test_rect_grid_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given dimension """
... | [-16] | modified | 0bd88f3fbab2d83733e9e9a1ef81fefd75fc438cd799d77cd42e20bbb34a5edb | assert|test_rect_grid_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian grid of given ... | [-16] | 175 | 4 |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 363 | 4 | assert | test_interpolate_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given dimension """
... | pytest.approx(1) | modified | a056d177956f60cbe5fe8478cee32bdca38f086a9df27578318d18d8a02d15fa | assert|test_interpolate_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian grid of give... | pytest.approx(1) | 362 | 4 |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_cylindrical.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical.py | 40 | 8 | assert | test_cylindrical_grid | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .. import CylindricalGrid
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
grid = CylindricalGrid(4, (-1, 2), (8, 9), periodic_z=periodic)
... | grid.operators | added | 71b422be3c985c7d7f0448ae4d11b9537fa0207f04ddf71b01d65e793db851ad | assert|test_cylindrical_grid|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .. import CylindricalGrid def test_cylindrical_grid(): """ test simple cylindrical grid """ for periodic in [True, False]: grid = CylindricalGrid(4, (-1, 2), (8, 9), periodic_z=periodic) ms... | null | null | null |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_cylindrical.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical.py | 90 | 4 | assert | test_polar_conversion | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .. import CylindricalGrid
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
grid = CylindricalGrid(4, (-1, 2), (8, 9), periodic_z=periodic)
... | np.all(dists <= np.sqrt(2)) | modified | 2e77dade934798f4c62db1084849f20164aeb0af917704442cdcd5cb83573406 | assert|test_polar_conversion|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .. import CylindricalGrid def test_cylindrical_grid(): """ test simple cylindrical grid """ for periodic in [True, False]: grid = CylindricalGrid(4, (-1, 2), (8, 9), periodic_z=periodic) ms... | np.all(dists <= np.sqrt(2)) | 89 | 4 |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 112 | 8 | assert | test_operators | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from ... import grids
from ..base import discretize_interval, GridBase
from ...tools.misc import skipUnlessModule
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2]... | grid.operators | added | 79d9d8646ee5ea53560be723bd7b27e209a1821e9ef5bb0af410f427cf4e9621 | assert|test_operators|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from ... import grids from ..base import discretize_interval, GridBase from ...tools.misc import skipUnlessModule def iter_grids(): """ generate some test grids """ yield grids.UnitGri... | null | null | null |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 113 | 13 | pytest.raises | test_operators | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from ... import grids
from ..base import discretize_interval, GridBase
from ...tools.misc import skipUnlessModule
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2]... | NotImplementedError) | added | adccdeb448a64d32d40145726d5138f634a5eead65162b10a2ec31d3c3541a70 | pytest.raises|test_operators|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from ... import grids from ..base import discretize_interval, GridBase from ...tools.misc import skipUnlessModule def iter_grids(): """ generate some test grids """ yield grids.... | null | null | null |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical.py | 59 | 4 | assert | test_polar_grid | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ...grids import PolarGrid, SphericalGrid
@pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid])
def test_spherical_base_bcs(grid_class):
""" test setting boundary conditions on spherical grids """
... | grid.operators | added | 8cacbd2ddbbd7c84617bf8d3a7149003398cc7bee8215d82431baffb08626fea | assert|test_polar_grid|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ...grids import PolarGrid, SphericalGrid @pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid]) def test_spherical_base_bcs(grid_class): """ test setting boundary conditions on spheri... | null | null | null |
zwicker-group/py-pde | train | 57 | e9fb6f496c1e4e459b8e505f33617dab1acab924 | train | pde/grids/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical.py | 148 | 4 | assert | test_spherical_annulus | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ...grids import PolarGrid, SphericalGrid
@pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid])
def test_spherical_base_bcs(grid_class):
""" test setting boundary conditions on spherical grids """
... | pytest.approx(0.25) | modified | 0b0f7197540daae50bc2af6a54539296e545bf9a02c3a137a43a9466c80d872e | assert|test_spherical_annulus|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ...grids import PolarGrid, SphericalGrid @pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid]) def test_spherical_base_bcs(grid_class): """ test setting boundary conditions on... | pytest.approx(0.25) | 146 | 4 |
zwicker-group/py-pde | train | 58 | b4893058fcec3b66bcae65963aedf3f78d0eca43 | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 114 | 8 | assert | test_operators | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from ... import grids
from ..base import discretize_interval, GridBase
from ...tools.misc import skipUnlessModule
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2]... | grid.operators | modified | b8f2ec5c02062fcf5bf09121decaef9606ff909940377bdc915388f53807f262 | assert|test_operators|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from ... import grids from ..base import discretize_interval, GridBase from ...tools.misc import skipUnlessModule def iter_grids(): """ generate some test grids """ yield grids.UnitGri... | grid.operators | 112 | 8 |
zwicker-group/py-pde | train | 58 | b4893058fcec3b66bcae65963aedf3f78d0eca43 | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 115 | 13 | pytest.raises | test_operators | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from ... import grids
from ..base import discretize_interval, GridBase
from ...tools.misc import skipUnlessModule
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2]... | ValueError) | modified | 329c9635f22fa06db3ed3960f8df882f845078258f8a1ab37ea48d53a1ab434d | pytest.raises|test_operators|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from ... import grids from ..base import discretize_interval, GridBase from ...tools.misc import skipUnlessModule def iter_grids(): """ generate some test grids """ yield grids.... | NotImplementedError) | 113 | 13 |
zwicker-group/py-pde | train | 58 | b4893058fcec3b66bcae65963aedf3f78d0eca43 | train | pde/grids/tests/test_generic.py | val | zwicker-group/py-pde:pde/grids/tests/test_generic.py | 118 | 8 | assert | test_operators | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import numpy as np
import pytest
from ... import grids
from ..base import discretize_interval, GridBase
from ...tools.misc import skipUnlessModule
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2]... | grid.operators | added | 91c7f25c5e6607190adf37bea80a9ad14b7123c162b6f32c24ea3f8edd544a47 | assert|test_operators|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import numpy as np import pytest from ... import grids from ..base import discretize_interval, GridBase from ...tools.misc import skipUnlessModule def iter_grids(): """ generate some test grids """ yield grids.UnitGri... | null | null | null |
zwicker-group/py-pde | train | 58 | b4893058fcec3b66bcae65963aedf3f78d0eca43 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 112 | 9 | pytest.raises | test_custom_operators | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import PDE, SwiftHohenbergPDE
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, FieldCollection
from ...grids.tests.test_generic import iter_grids
def test_pde_wrong_input():
"""... | ValueError) | added | b02ca2aa48b75f0d4008833cc71d4433582cbb81a2d76581f54810b22673df9c | pytest.raises|test_custom_operators|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import PDE, SwiftHohenbergPDE from ...grids import UnitGrid from ...fields import ScalarField, VectorField, FieldCollection from ...grids.tests.test_generic import iter_grids def ... | null | null | null |
zwicker-group/py-pde | train | 58 | b4893058fcec3b66bcae65963aedf3f78d0eca43 | train | pde/pdes/tests/test_pde.py | val | zwicker-group/py-pde:pde/pdes/tests/test_pde.py | 122 | 4 | assert_* | test_custom_operators | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import PDE, SwiftHohenbergPDE
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, FieldCollection
from ...grids.tests.test_generic import iter_grids
def test_pde_wrong_input():
"""... | res.data) | added | a5049e756bc3327a2437c8c8d6892f8e36f8740bc2eff0e67b2bab7c5e732a37 | assert_*|test_custom_operators|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import PDE, SwiftHohenbergPDE from ...grids import UnitGrid from ...fields import ScalarField, VectorField, FieldCollection from ...grids.tests.test_generic import iter_grids def test_... | null | null | null |
zwicker-group/py-pde | train | 59 | 6fd15e586bec119b33bf794a3a0160c044e0a646 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 187 | 16 | assert_* | #!/usr/bin/env python3
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import numpy as np
import numba
from pde.grids import UnitGrid, CylindricalGrid, SphericalGrid
from pde.grids.operators import cartesian, cylindrical, spherical
from pde.g... | result) | modified | 547b876788b26ebe37b1c90a63f7f1c5f54cf38543ccb45e9a595e869aea5acf | assert_*||#!/usr/bin/env python3 import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) import numpy as np import numba from pde.grids import UnitGrid, CylindricalGrid, SphericalGrid from pde.grids.operators import cartesian, cylindrical, spherical from... | result) | 187 | 16 | |
zwicker-group/py-pde | train | 59 | 6fd15e586bec119b33bf794a3a0160c044e0a646 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 209 | 12 | assert_* | #!/usr/bin/env python3
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import numpy as np
import numba
from pde.grids import UnitGrid, CylindricalGrid, SphericalGrid
from pde.grids.operators import cartesian, cylindrical, spherical
from pde.g... | result) | modified | 122a39c612e013997d411714856c32d0a6b44bafd96e2f0164301d161c56e439 | assert_*||#!/usr/bin/env python3 import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) import numpy as np import numba from pde.grids import UnitGrid, CylindricalGrid, SphericalGrid from pde.grids.operators import cartesian, cylindrical, spherical from... | result) | 209 | 12 | |
zwicker-group/py-pde | train | 60 | aff9f6aab9b1173bfaf658732f25a8782ab1ebe8 | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 239 | 8 | assert_* | test_div_grad_const | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
from scipy import ndimage
import pytest
from .. import cartesian as ops
from ... import UnitGrid, CartesianGrid
from ....fields import ScalarField
π = np.pi
def _get_random_grid_bcs(ndim: int, dx='random', periodi... | np.zeros(32)) | modified | 13106e9048ff363a55f289546c71026088cc18932d8fbf186e29f6a70576aebc | assert_*|test_div_grad_const|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np from scipy import ndimage import pytest from .. import cartesian as ops from ... import UnitGrid, CartesianGrid from ....fields import ScalarField π = np.pi def _get_random_grid_bcs(ndim: int, d... | np.zeros(32)) | 239 | 8 |
zwicker-group/py-pde | train | 60 | aff9f6aab9b1173bfaf658732f25a8782ab1ebe8 | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 258 | 8 | assert_* | test_div_grad_linear | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
from scipy import ndimage
import pytest
from .. import cartesian as ops
from ... import UnitGrid, CartesianGrid
from ....fields import ScalarField
π = np.pi
def _get_random_grid_bcs(ndim: int, dx='random', periodi... | np.zeros(32)) | modified | 30137d6c5e0525c15ea57f3850c41dd42d04fb90dcde3c96bd0470bc30ce0830 | assert_*|test_div_grad_linear|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np from scipy import ndimage import pytest from .. import cartesian as ops from ... import UnitGrid, CartesianGrid from ....fields import ScalarField π = np.pi def _get_random_grid_bcs(ndim: int, ... | np.zeros(32)) | 258 | 8 |
zwicker-group/py-pde | train | 60 | aff9f6aab9b1173bfaf658732f25a8782ab1ebe8 | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 275 | 4 | assert_* | test_div_grad_quadratic | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
from scipy import ndimage
import pytest
from .. import cartesian as ops
from ... import UnitGrid, CartesianGrid
from ....fields import ScalarField
π = np.pi
def _get_random_grid_bcs(ndim: int, dx='random', periodi... | np.full(32, 2.)) | modified | 77f3f04f8b7cfc68de284bb16f43c0f6f03e2bfdbefd0a6425516478e39ef947 | assert_*|test_div_grad_quadratic|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np from scipy import ndimage import pytest from .. import cartesian as ops from ... import UnitGrid, CartesianGrid from ....fields import ScalarField π = np.pi def _get_random_grid_bcs(ndim: in... | np.full(32, 2.)) | 275 | 4 |
zwicker-group/py-pde | train | 60 | aff9f6aab9b1173bfaf658732f25a8782ab1ebe8 | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 306 | 4 | assert | test_degenerated_grid | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
from scipy import ndimage
import pytest
from .. import cartesian as ops
from ... import UnitGrid, CartesianGrid
from ....fields import ScalarField
π = np.pi
def _get_random_grid_bcs(ndim: int, dx='random', periodi... | g2.shape | modified | 076e5d61534e496e5c62f0c36d2efa0c426506c08d2ea70daed3f593d5e6e759 | assert|test_degenerated_grid|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np from scipy import ndimage import pytest from .. import cartesian as ops from ... import UnitGrid, CartesianGrid from ....fields import ScalarField π = np.pi def _get_random_grid_bcs(ndim: int, d... | g2.shape | 306 | 4 |
zwicker-group/py-pde | train | 61 | 38dd9297429bd10b531327503e446dd7e85e28ed | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 348 | 8 | assert_* | test_make_derivative | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
from scipy import ndimage
import pytest
from .. import cartesian as ops
from ... import UnitGrid, CartesianGrid
from ....fields import ScalarField
π = np.pi
def _get_random_grid_bcs(ndim: int, dx='random', periodi... | diff(field.data)) | added | b00f9cb0da01aa6aa6420e91be049678f7d739138845903c95058cc7df4a34fd | assert_*|test_make_derivative|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np from scipy import ndimage import pytest from .. import cartesian as ops from ... import UnitGrid, CartesianGrid from ....fields import ScalarField π = np.pi def _get_random_grid_bcs(ndim: int, ... | null | null | null |
zwicker-group/py-pde | train | 62 | f23db73cadcfe72c4eae6de81d7b1020fb1dbf87 | train | pde/pdes/tests/test_diffusion.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion.py | 37 | 4 | assert | test_simple_diffusion_value | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import DiffusionPDE
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert i... | isinstance(info, dict) | added | c0cdb63ba2e86b7d34a9e0fa77c6e55e9dc9cf3b37664eb9dc3aefbfc62fdd6a | assert|test_simple_diffusion_value|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import DiffusionPDE from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = Diffu... | null | null | null |
zwicker-group/py-pde | train | 62 | f23db73cadcfe72c4eae6de81d7b1020fb1dbf87 | train | pde/pdes/tests/test_diffusion.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion.py | 38 | 4 | assert_* | test_simple_diffusion_value | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import DiffusionPDE
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert i... | grid.axes_coords[0]) | modified | f078eba6f978aad2f5a08809cd6464ddb51e7dabe5dd7dd3cb006dca700dfe38 | assert_*|test_simple_diffusion_value|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import DiffusionPDE from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = Dif... | grid.axes_coords[0]) | 37 | 4 |
zwicker-group/py-pde | train | 62 | f23db73cadcfe72c4eae6de81d7b1020fb1dbf87 | train | pde/pdes/tests/test_diffusion.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion.py | 50 | 4 | assert_* | test_simple_diffusion_flux_right | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import DiffusionPDE
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert i... | 3 * grid.axes_coords[0]) | modified | 0535c4c9db9dafc6572276acf26a7bf91e90ff777e2f0f2e2596616dbe982f1f | assert_*|test_simple_diffusion_flux_right|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import DiffusionPDE from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq ... | 3 * grid.axes_coords[0]) | 49 | 4 |
zwicker-group/py-pde | train | 62 | f23db73cadcfe72c4eae6de81d7b1020fb1dbf87 | train | pde/pdes/tests/test_diffusion.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion.py | 62 | 4 | assert_* | test_simple_diffusion_flux_left | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import DiffusionPDE
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert i... | 2 - 2 * grid.axes_coords[0]) | modified | e17034c7f2d71a5ea3847953cc0fad8aaf2c3e790836e081a376bdff5396a749 | assert_*|test_simple_diffusion_flux_left|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import DiffusionPDE from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq =... | 2 - 2 * grid.axes_coords[0]) | 61 | 4 |
zwicker-group/py-pde | train | 63 | 7caf3e83de375b49edd902494cda4e9e745af9e6 | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 348 | 8 | assert_* | test_make_derivative | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
from scipy import ndimage
import pytest
from .. import cartesian as ops
from ... import UnitGrid, CartesianGrid
from ....fields import ScalarField
π = np.pi
def _get_random_grid_bcs(ndim: int, dx='random', periodi... | diff(field.data)) | modified | b8cff75b4b9f38fc2a560570eff92944633ad8382a7926e9d9589946bccd4a8f | assert_*|test_make_derivative|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np from scipy import ndimage import pytest from .. import cartesian as ops from ... import UnitGrid, CartesianGrid from ....fields import ScalarField π = np.pi def _get_random_grid_bcs(ndim: int, ... | diff(field.data)) | 348 | 8 |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 67 | 4 | assert_* | test_shapes_nfields | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, SphericalGrid,
... | field_c.data) | modified | cd85f6996fe5a8fe9d6620740ae8700577316d0e6306bc2c571f3a6727147993 | assert_*|test_shapes_nfields|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, CartesianGrid, PolarGrid, SphericalG... | field_c.data) | 69 | 4 |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 166 | 8 | assert_* | test_boundary_interpolation_vector | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | bndry_val) | added | 4cd9b2722d4ff63763da40bb2f19df40c3914dd5ef5c8c45ada39f039bdf82ff | assert_*|test_boundary_interpolation_vector|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ te... | null | null | null |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 225 | 4 | assert | test_inhomogeneous_bcs | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(2.5) | added | 2ad8e8b5dc99d1e55ec918e9207c493e61c09262aa53e2ab07d036b672fa8dd4 | assert|test_inhomogeneous_bcs|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) as... | null | null | null |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 108 | 4 | assert_* | test_grid_div_grad | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | res[1:-1]) | modified | 6a52416d30865f55779bac07a6323c86992c1a63a5a128c7f5c695be2f88a738 | assert_*|test_grid_div_grad|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for a simple s... | res[1:-1]) | 107 | 4 |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/storage/tests/test_generic.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic.py | 38 | 12 | assert_* | test_storage_write | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import functools
import numpy as np
from .. import MemoryStorage, FileStorage
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import module_available
def test_storage_write(tmp_path)... | np.arange(dim)) | modified | de0d6ffefccedaf46e1a576a3ce6f7df7e472c9d1b7dde71e2e572a71540ea1a | assert_*|test_storage_write|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import functools import numpy as np from .. import MemoryStorage, FileStorage from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...tools.misc import module_available def test_s... | np.arange(dim)) | 40 | 12 |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/tests/test_integration.py | train | zwicker-group/py-pde:pde/tests/test_integration.py | 35 | 4 | assert_* | test_inhomogeneous_bcs | '''
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import UnitGrid, CartesianGrid, ScalarField, DiffusionPDE, FileStorage
from ..tools.misc import skipUnlessModule
@skipUnlessModule('h5py')
def test_writing_to_storage(tmp... | 0.9 * np.sin(data['data_x'])) | modified | 8013aa3b875af90c605433184f6085efe3fec6aec78abc676f7f0fce08a98559 | assert_*|test_inhomogeneous_bcs|''' Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import UnitGrid, CartesianGrid, ScalarField, DiffusionPDE, FileStorage from ..tools.misc import skipUnlessModule @skipUnlessModule('h5py') def t... | 0.9 * np.sin(data['data_x'])) | 38 | 4 |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/tools/tests/test_spherical.py | test | zwicker-group/py-pde:pde/tools/tests/test_spherical.py | 32 | 8 | assert | test_volume_conversion_numba | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import math
import random
import pytest
import numpy as np
from scipy import spatial, integrate
from .. import spherical
def test_volume_conversion():
""" tests conversion of volume and radius of droplet """
for dim in [1, 2, 3]:
radi... | pytest.approx(radius) | modified | 854a1734325e7bd7d9dc32b0e7a2e8cc1ce01bc7a815bb0e056d53f68135920c | assert|test_volume_conversion_numba|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import math import random import pytest import numpy as np from scipy import spatial, integrate from .. import spherical def test_volume_conversion(): """ tests conversion of volume and radius of droplet """ for dim in [... | pytest.approx(radius) | 34 | 8 |
zwicker-group/py-pde | train | 64 | 5a0427829d23d29c55406b6ab655f7b456545d45 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 38 | 4 | assert | test_plot_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import pickle
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers im... | output_file.exists() | modified | e2dd91c9c5da4b5790d181c04c7513f0af6528d8e62785d76871d8abab47eb74 | assert|test_plot_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import pickle import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahn... | output_file.exists() | 39 | 4 |
zwicker-group/py-pde | train | 65 | 0572cfaf881fd95ff3c8676c07c34abe62b3d02d | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 38 | 9 | pytest.raises | test_parameters | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pickle
import pytest
from ..parameters import (Parameter, DeprecatedParameter, HideParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
... | ValueError) | modified | b5e89014b0d401d7e9f57924eaf4046bfe324ba8cb638c9c71cb172239203d17 | pytest.raises|test_parameters|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pickle import pytest from ..parameters import (Parameter, DeprecatedParameter, HideParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ param = Paramete... | ValueError) | 38 | 9 |
zwicker-group/py-pde | train | 65 | 0572cfaf881fd95ff3c8676c07c34abe62b3d02d | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 59 | 9 | pytest.raises | test_parameters | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pickle
import pytest
from ..parameters import (Parameter, DeprecatedParameter, HideParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
... | KeyError) | modified | 487f5afb976bd9bfe29dfc1676f8ac631a23db2022ebfefc2b9c771067f55b81 | pytest.raises|test_parameters|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pickle import pytest from ..parameters import (Parameter, DeprecatedParameter, HideParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ param = Paramete... | KeyError) | 58 | 9 |
zwicker-group/py-pde | train | 65 | 0572cfaf881fd95ff3c8676c07c34abe62b3d02d | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 116 | 4 | assert | test_hidden_parameter | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pickle
import pytest
from ..parameters import (Parameter, DeprecatedParameter, HideParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
... | {'a': 1, 'b': 2} | added | 545acd2242ce3a4459490db97bed586d5bab80bc3f71109730d869d6744bc442 | assert|test_hidden_parameter|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pickle import pytest from ..parameters import (Parameter, DeprecatedParameter, HideParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ param = Parameter... | null | null | null |
zwicker-group/py-pde | train | 65 | 0572cfaf881fd95ff3c8676c07c34abe62b3d02d | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 135 | 8 | assert | test_get_all_parameters | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pickle
import pytest
from ..parameters import (Parameter, DeprecatedParameter, HideParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
... | p2.keys() | added | d167e2742b5743f63d89013d92fa3a98e17df335fe3ef0d9df6f61b63343b4c2 | assert|test_get_all_parameters|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pickle import pytest from ..parameters import (Parameter, DeprecatedParameter, HideParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ param = Paramet... | null | null | null |
zwicker-group/py-pde | train | 66 | 24bf808840b235a81b11b7ac2f89f78012d5b82a | train | pde/grids/boundaries/tests/test_axis.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis.py | 28 | 8 | assert | test_boundary_pair | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ... import UnitGrid
from ..local import BCBase
from ..axis import BoundaryPair, get_boundary_axis
def test_boundary_pair():
""" test setting boundary conditions for whole axis """
g = UnitGrid([2, 3])
b ... | [blo, bho] | added | 8b5bfbe90f01905314ab2c5f988cfc8f833cad23fe9755e05d4863900feb377c | assert|test_boundary_pair|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ... import UnitGrid from ..local import BCBase from ..axis import BoundaryPair, get_boundary_axis def test_boundary_pair(): """ test setting boundary conditions for whole axis """ g = UnitGrid([... | null | null | null |
zwicker-group/py-pde | train | 66 | 24bf808840b235a81b11b7ac2f89f78012d5b82a | train | pde/grids/boundaries/tests/test_axis.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis.py | 44 | 4 | assert | test_boundary_pair | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ... import UnitGrid
from ..local import BCBase
from ..axis import BoundaryPair, get_boundary_axis
def test_boundary_pair():
""" test setting boundary conditions for whole axis """
g = UnitGrid([2, 3])
b ... | BCBase.from_data(g, 0, False, {'value': 0}) | modified | b02251f4042c68b37c4ae6704ac6a8ca5d71fe0f78b5e956482a5612d9218293 | assert|test_boundary_pair|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ... import UnitGrid from ..local import BCBase from ..axis import BoundaryPair, get_boundary_axis def test_boundary_pair(): """ test setting boundary conditions for whole axis """ g = UnitGrid([... | BCBase.from_data(g, 0, False, {'value': 0}) | 43 | 4 |
zwicker-group/py-pde | train | 66 | 24bf808840b235a81b11b7ac2f89f78012d5b82a | train | pde/grids/boundaries/tests/test_axis.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis.py | 54 | 8 | assert | test_get_axis_boundaries | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ... import UnitGrid
from ..local import BCBase
from ..axis import BoundaryPair, get_boundary_axis
def test_boundary_pair():
""" test setting boundary conditions for whole axis """
g = UnitGrid([2, 3])
b ... | '"' + data + '"' | modified | d114ec4c93bb3e03a1cb2b31fdfcec7c5699f7df602efb5cdde8e0149bbe2238 | assert|test_get_axis_boundaries|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ... import UnitGrid from ..local import BCBase from ..axis import BoundaryPair, get_boundary_axis def test_boundary_pair(): """ test setting boundary conditions for whole axis """ g = Unit... | '"' + data + '"' | 53 | 8 |
zwicker-group/py-pde | train | 66 | 24bf808840b235a81b11b7ac2f89f78012d5b82a | train | pde/grids/boundaries/tests/test_axis.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axis.py | 57 | 12 | assert | test_get_axis_boundaries | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ... import UnitGrid
from ..local import BCBase
from ..axis import BoundaryPair, get_boundary_axis
def test_boundary_pair():
""" test setting boundary conditions for whole axis """
g = UnitGrid([2, 3])
b ... | b.periodic | modified | 5432fd7422e9d90c6ff71cae773a3f567c01588179b963573b5fb60116baf6cd | assert|test_get_axis_boundaries|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ... import UnitGrid from ..local import BCBase from ..axis import BoundaryPair, get_boundary_axis def test_boundary_pair(): """ test setting boundary conditions for whole axis """ g = Unit... | b.periodic | 56 | 12 |
zwicker-group/py-pde | train | 67 | e02aaff085558b4c6d4742b589fc0889bb4988cc | train | pde/grids/operators/tests/test_cartesian.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_cartesian.py | 348 | 8 | assert_* | test_make_derivative | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
from scipy import ndimage
import pytest
from .. import cartesian as ops
from ... import UnitGrid, CartesianGrid
from ....fields import ScalarField
π = np.pi
def _get_random_grid_bcs(ndim: int, dx='random', periodi... | diff(field.data)) | modified | d891ad8d60649cfba3041c107bb4fdcc25856b3cbd8cc13b14c6cbd162037d28 | assert_*|test_make_derivative|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np from scipy import ndimage import pytest from .. import cartesian as ops from ... import UnitGrid, CartesianGrid from ....fields import ScalarField π = np.pi def _get_random_grid_bcs(ndim: int, ... | diff(field.data)) | 348 | 8 |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 380 | 8 | assert_* | test_boundary_interpolation_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ...grids.tests.te... | bndry_val) | added | 3510b803dc64b989ae03d547a1d0969045824a598ad2fdfc0c27de827687609e | assert_*|test_boundary_interpolation_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.boundaries imp... | null | null | null |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 382 | 8 | assert_* | test_boundary_interpolation_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ...grids.tests.te... | bndry_val) | added | 32e4da4ac327df94a21805ce5a5872d80a7bcb78a055e21c877bdf8e86a0900f | assert_*|test_boundary_interpolation_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.boundaries imp... | null | null | null |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 395 | 8 | assert_* | test_boundary_interpolation_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ...grids.tests.te... | bndry_val) | added | c47cdbdf73b7d7920648beb20cee6ecc7d509f0ee12362391130216e44476ba2 | assert_*|test_boundary_interpolation_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.boundaries imp... | null | null | null |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/fields/tests/test_scalar.py | test | zwicker-group/py-pde:pde/fields/tests/test_scalar.py | 399 | 8 | assert_* | test_boundary_interpolation_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..scalar import ScalarField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid, PolarGrid
from ...grids.boundaries import DomainError
from ...grids.tests.te... | bndry_val) | added | 54c546a7afe6a199e007b85954b596b5a851c0a7ae49a9c7bf8c397d11f13644 | assert_*|test_boundary_interpolation_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..scalar import ScalarField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid, PolarGrid from ...grids.boundaries imp... | null | null | null |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 56 | 12 | assert | test_generic_cartesian_grid | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | grid.contains_point(grid.get_random_point()) | modified | 553f06ac77a8adb79cdd4db29ec532eb09e6e55b0e11766d965b623c2d85b635 | assert|test_generic_cartesian_grid|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random C... | grid.contains_point(grid.get_random_point()) | 56 | 12 |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 138 | 4 | assert | test_unit_grid_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | np.allclose(grid.distance_real(c1, c2), 0) | modified | ef690764a29fb0c126a0ef33820e17a13a8ff64af49ca087f3bf41ed969edb3e | assert|test_unit_grid_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian g... | np.allclose(grid.distance_real(c1, c2), 0) | 138 | 4 |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 252 | 4 | assert | test_rect_grid_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | np.allclose(grid.distance_real(c1, c2), 0) | modified | bf4dd3544f54bd73adbff4de39c15856ca769e936d77e909085882c564c66f4e | assert|test_rect_grid_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian g... | np.allclose(grid.distance_real(c1, c2), 0) | 252 | 4 |
zwicker-group/py-pde | train | 68 | c318c87cc29bc7954834900e3ba8407847fa471c | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 371 | 4 | assert | test_interpolate_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | pytest.approx(1) | modified | a75353f9fc46e71eea83625e25ecc3bce220eb424fef199aa0b53fa45bb13ba3 | assert|test_interpolate_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian... | pytest.approx(1) | 371 | 4 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 42 | 4 | assert | test_vectors | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | v2.grid | modified | d2889e4a9defe27370f61546cc94707a8c0101efbe3c62354f868a9b61bafa0f | assert|test_vectors|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some vector fields ""... | v2.grid | 42 | 4 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 73 | 4 | assert | test_divergence | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | (16, 16) | modified | bddcb828b7dc3a3b97e45752d25507b7f9695faa63efd22334056cd993ccad81 | assert|test_divergence|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some vector fields... | (16, 16) | 73 | 4 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 90 | 4 | assert_* | test_vector_laplace | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | -np.sin(y) + np.cos(x)) | modified | 92736a741f86c9f81d7d17c652201de01eda675967eb8adce7682448869f9ef8 | assert_*|test_vector_laplace|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some vector ... | -np.sin(y) + np.cos(x)) | 90 | 4 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 140 | 9 | pytest.raises | test_from_expressions | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
from ...tools.misc import module_available
def test_vectors():
""" test some vector fields """
grid... | ValueError) | modified | 9e2cb962da42d03c4d85c21cfc53bd5f4958470b179086adb7dacde8423f11ed | pytest.raises|test_from_expressions|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid from ...tools.misc import module_available def test_vectors(): """ test some ... | ValueError) | 140 | 9 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 208 | 4 | assert_* | test_rect_grid_1d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | 16 - 1e-10) | modified | 80653543cdf590b1adef4512a2ee7013165d257c67e8a9fbd46752764987bac2 | assert_*|test_rect_grid_1d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian... | 16 - 1e-10) | 205 | 4 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 233 | 4 | assert | test_rect_grid_2d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | [0, 2, 0, 2] | modified | 8f96edce09f8e9fb391bcd63312156591a70325995c0ac4165f2d2f1a9b44c2f | assert|test_rect_grid_2d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian g... | 16 | 234 | 4 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 269 | 4 | assert_* | test_rect_grid_3d | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | np.ones(3)) | modified | 2ff2fe569cf59fe4e07224f571bbbd8099a3361ece80fa62b78e9bdcf66f7d7c | assert_*|test_rect_grid_3d|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Cartesian... | bounds) | 268 | 4 |
zwicker-group/py-pde | train | 69 | 388baa5a398b0fbe13156f9a518aa691080e9665 | train | pde/grids/tests/test_cartesian.py | test | zwicker-group/py-pde:pde/grids/tests/test_cartesian.py | 307 | 16 | pytest.approx | test_unit_rect_grid | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import random
import numpy as np
import pytest
from .. import UnitGrid, CartesianGrid
from ..boundaries import Boundaries, PeriodicityError, DomainError
def _get_cartesian_grid(dim=2, periodic=True):
""" return a random Cartesian grid of given di... | g2.typical_discretization) | modified | 1c84d0408771e6fd9a8fa40ec80fcdb334a76acc0a9271ed5ffb0596315f0b06 | pytest.approx|test_unit_rect_grid|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import random import numpy as np import pytest from .. import UnitGrid, CartesianGrid from ..boundaries import Boundaries, PeriodicityError, DomainError def _get_cartesian_grid(dim=2, periodic=True): """ return a random Ca... | g2.distance_real(p1, p2)) | 305 | 20 |
zwicker-group/py-pde | train | 70 | 15b15c673ff2f1e692cc57406ee58efd357330e9 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 210 | 49 | pytest.approx | test_mixed_condition | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | 2 + 1/3) | added | 05b2c558da346a9a312499a5a4a5424e5b501b8aed31e9dedbf18bcb6af16ee8 | pytest.approx|test_mixed_condition|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], ... | null | null | null |
zwicker-group/py-pde | train | 70 | 15b15c673ff2f1e692cc57406ee58efd357330e9 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 211 | 4 | assert | test_mixed_condition | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(2) | added | 200ba5ca75be9ac1fa901e82a6910ab6d0f4596379df9718650f03c071b2514f | assert|test_mixed_condition|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) asse... | null | null | null |
zwicker-group/py-pde | train | 70 | 15b15c673ff2f1e692cc57406ee58efd357330e9 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 231 | 4 | assert | test_inhomogeneous_bcs | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(1.5) | modified | 8a97eda5f651f7477389c7c30f403ce28bd8f852a18d741d956ca7b0c2137c6f | assert|test_inhomogeneous_bcs|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) as... | pytest.approx(1.5) | 228 | 4 |
zwicker-group/py-pde | train | 70 | 15b15c673ff2f1e692cc57406ee58efd357330e9 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 246 | 4 | assert | test_inhomogeneous_bcs | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(1) | added | ceb14c18f0e53c2108ffa47042b7fe4d832de20b78fed5fec02b0868f73cb930 | assert|test_inhomogeneous_bcs|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) as... | null | null | null |
zwicker-group/py-pde | train | 71 | 8f1b6288079f0f447f76d2e0e87c1f21d687a046 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 67 | 13 | pytest.raises | test_individual_boundaries | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | RuntimeError) | modified | 19ab3e604d10603f4f0ad40d8a73e184428aa9652953b4c46ae00a8275d94cb7 | pytest.raises|test_individual_boundaries|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a,... | RuntimeError) | 67 | 13 |
zwicker-group/py-pde | train | 71 | 8f1b6288079f0f447f76d2e0e87c1f21d687a046 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 166 | 4 | assert | test_virtual_points_linked_data | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | not bc.value_is_linked | modified | b30816ced79d8117d76c22c78429a2451518f4dbabc8a3587a935ad1a9a213d8 | assert|test_virtual_points_linked_data|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [... | not bc.value_is_linked | 166 | 4 |
zwicker-group/py-pde | train | 71 | 8f1b6288079f0f447f76d2e0e87c1f21d687a046 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 198 | 8 | assert | test_mixed_condition | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(bc2.get_virtual_point(data)) | modified | 96d5757e0406c3c0a3c75a95cabe2d76bc64ae5bf36e2a50b12bcdb5af38254d | assert|test_mixed_condition|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) asse... | pytest.approx(bc2.get_virtual_point(data)) | 198 | 8 |
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