repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 1 | 4a0dcefb6ac096420a5a1ac9c3f6abc18a6bc12b | train | pde/grids/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/tests/test_spherical.py | 197 | 4 | assert_* | test_spherical_to_cartesian | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ...grids import PolarGrid, SphericalGrid
@pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid])
def test_spherical_base_bcs(grid_class):
""" test setting boundary conditions on spherical grids """
... | pf_cart.data) | modified | 3ad9a829dae5f40bcc1f055696fd62c50dddd3e42d3dd8fc6641c149cca0f5ea | assert_*|test_spherical_to_cartesian|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ...grids import PolarGrid, SphericalGrid @pytest.mark.parametrize("grid_class", [PolarGrid, SphericalGrid]) def test_spherical_base_bcs(grid_class): """ test setting boundary condit... | pf_cart.data) | 195 | 4 |
zwicker-group/py-pde | train | 3 | 9c54fd49db617b0846ef9c8b0193d6e9c9b534aa | train | pde/tests/test_integration.py | train | zwicker-group/py-pde:pde/tests/test_integration.py | 41 | 4 | assert_* | test_inhomogeneous_bcs | '''
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
from ..grids import UnitGrid, CartesianGrid
from ..fields import ScalarField
from ..pdes import DiffusionPDE
from ..storage import FileStorage
from ..tools.misc im... | 0.9 * np.sin(data['data_x'])) | modified | fd227327e0059768003ae580d645cb070c777d1a1aa7d8b1fbbccc48a3187322 | assert_*|test_inhomogeneous_bcs|''' Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np from ..grids import UnitGrid, CartesianGrid from ..fields import ScalarField from ..pdes import DiffusionPDE from ..storage import FileS... | 0.9 * np.sin(data['data_x'])) | 39 | 4 |
zwicker-group/py-pde | train | 3 | 9c54fd49db617b0846ef9c8b0193d6e9c9b534aa | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 38 | 4 | assert | test_plot_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...solvers import ExplicitSolver
from ...co... | output_file.exists() | modified | 7a8ae656cf76612109ee636540a04f91d3e05a599adb510342e818e01f96caf1 | assert|test_plot_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...solvers import Exp... | output_file.exists() | 40 | 4 |
zwicker-group/py-pde | train | 3 | 9c54fd49db617b0846ef9c8b0193d6e9c9b534aa | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 90 | 4 | assert | test_trackers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...solvers import ExplicitSolver
from ...co... | data.times | modified | 9c541b7cc5557a5830a6073691da017e5bfde5e6dd442d9a80513b1bfd3b5480 | assert|test_trackers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...solvers import Explici... | data.times | 93 | 4 |
zwicker-group/py-pde | train | 3 | 9c54fd49db617b0846ef9c8b0193d6e9c9b534aa | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 116 | 4 | assert_* | test_callback_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...solvers import ExplicitSolver
from ...co... | data_tracker.data) | modified | 53cdfc4aa899cf79a0e42bc9d58c8807596096ba29e21d61e86395c826f0e960 | assert_*|test_callback_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...solvers impo... | data_tracker.data) | 119 | 4 |
zwicker-group/py-pde | train | 3 | 9c54fd49db617b0846ef9c8b0193d6e9c9b534aa | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 192 | 4 | assert | test_consistency_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...solvers import ExplicitSolver
from ...co... | con.info['t_end'] | modified | cbf6ac7d3c376d151323c0073230a8eab74a5ea2dc6918daacbf22db2cf17757 | assert|test_consistency_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...solvers imp... | con.info['t_end'] | 195 | 4 |
zwicker-group/py-pde | train | 5 | 666dd43b22a1d3ed968622279ee7a0c8791c8523 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 299 | 12 | assert | test_random_normal | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | pytest.approx(m, rel=0.1, abs=0.1) | modified | a8456aa46b520057a82fcfa52ef4a936e0e38f8331a35dfce24ec0575b1d28aa | assert|test_random_normal|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Cartes... | pytest.approx(m, rel=0.1, abs=0.1) | 296 | 12 |
zwicker-group/py-pde | train | 5 | 666dd43b22a1d3ed968622279ee7a0c8791c8523 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 328 | 16 | assert_* | test_fluctuations | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | expect) | modified | 90fb9b8c30019d1dc648c385e7d2c748f177a84ea7ab05f97b33d4c1067d2f20 | assert_*|test_fluctuations|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Carte... | expect) | 325 | 16 |
zwicker-group/py-pde | train | 5 | 666dd43b22a1d3ed968622279ee7a0c8791c8523 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 363 | 4 | assert | test_vector_from_scalars | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | 'test' | modified | 0342b4332a8b45a3e4e7e83e4a62dc467aa86043c95dcb173321db3f09a6aa55 | assert|test_vector_from_scalars|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, ... | 'test' | 360 | 4 |
zwicker-group/py-pde | train | 5 | 666dd43b22a1d3ed968622279ee7a0c8791c8523 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 384 | 4 | assert_* | test_dot_product | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | expected) | modified | b8c2150fec25949a1e7abe71dd6538782a26359ab3a8427e18d53f03d6345567 | assert_*|test_dot_product|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Cartes... | expected) | 381 | 4 |
zwicker-group/py-pde | train | 6 | 6c7a2a7314843cfc9ec5aba48340311c556bd984 | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 47 | 8 | assert_* | test_conservative_laplace_sph | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | lap2(f.data)) | added | f170c2ae87fd4bcefefc44d0d7bf2876de5f3b8f607055deda7aaafc5e9a0e84 | assert_*|test_conservative_laplace_sph|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for... | null | null | null |
zwicker-group/py-pde | train | 6 | 6c7a2a7314843cfc9ec5aba48340311c556bd984 | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 69 | 4 | assert | test_small_annulus | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | 1e-3 | modified | def1303d61ab562bffb23013acb8cf2c5b8cb36e3fd0ebcec60eff6af8cca498 | assert|test_small_annulus|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for a simple sph... | 1e-3 | 69 | 4 |
zwicker-group/py-pde | train | 6 | 6c7a2a7314843cfc9ec5aba48340311c556bd984 | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 86 | 4 | assert_* | test_grid_laplace | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | b_3d[i, i, i]) | modified | aa46ee2914899381d4f0ded7dc513bea7988fbd70133d11698bb5c117fbb8f7d | assert_*|test_grid_laplace|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for a simple sp... | b_3d[i, i, i]) | 86 | 4 |
zwicker-group/py-pde | train | 6 | 6c7a2a7314843cfc9ec5aba48340311c556bd984 | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 105 | 4 | assert_* | test_grid_div_grad | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | res[1:-1]) | modified | 94153a4969cc7a7c9d4fbaf83bd1a8fc037b35111ab40b220f30f1828dd86c5c | assert_*|test_grid_div_grad|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for a simple s... | res[1:-1]) | 105 | 4 |
zwicker-group/py-pde | train | 7 | d14cd6351b07ebbd6fd9e0c4d180982f6760dbdb | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 47 | 8 | assert_* | test_conservative_laplace_sph | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | lap2(f.data)) | modified | 024ca31a7b5613852b323d1365febcb82707e6b8c7223b63e777a12b5f7df176 | assert_*|test_conservative_laplace_sph|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for... | lap2(f.data)) | 47 | 8 |
zwicker-group/py-pde | train | 7 | d14cd6351b07ebbd6fd9e0c4d180982f6760dbdb | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 68 | 4 | assert_* | test_small_annulus | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | res[1]) | modified | 5c586289639a9086f10d1f2486f8609c5d2f6d37303bec542d7c445b6b1a949a | assert_*|test_small_annulus|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for a simple s... | res[1]) | 68 | 4 |
zwicker-group/py-pde | train | 7 | d14cd6351b07ebbd6fd9e0c4d180982f6760dbdb | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 86 | 4 | assert_* | test_grid_laplace | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | b_3d[i, i, i]) | modified | 9ca8adc87f8ece115e110796ef6c13fa7b8ef46a591db7fbc60e8d0267f3889d | assert_*|test_grid_laplace|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for a simple sp... | b_3d[i, i, i]) | 86 | 4 |
zwicker-group/py-pde | train | 7 | d14cd6351b07ebbd6fd9e0c4d180982f6760dbdb | train | pde/grids/operators/tests/test_spherical.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical.py | 106 | 4 | assert_* | test_grid_div_grad | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import spherical as ops
from ... import SphericalGrid, CartesianGrid
from ....fields import ScalarField, VectorField, Tensor2Field
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | res[1:-1]) | modified | adba5a9001a662d55223e7f80a8288a80f15c39a7ff22649ab2ab92ac2f373b6 | assert_*|test_grid_div_grad|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import spherical as ops from ... import SphericalGrid, CartesianGrid from ....fields import ScalarField, VectorField, Tensor2Field def test_findiff_sph(): """ test operator for a simple s... | res[1:-1]) | 106 | 4 |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 312 | 4 | assert | test_random_colored | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | np.allclose(f.average, 0) | modified | f7bce8c29bb5199f72668520855f1014ebfea94726049a2b6569b2dced418279 | assert|test_random_colored|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Carte... | np.allclose(f.average, 0) | 312 | 4 |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 363 | 4 | assert | test_vector_from_scalars | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | 'test' | modified | db54b81ba21075bb382eb22edf26c975467a7a55f5bad602c420a08704c39259 | assert|test_vector_from_scalars|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, ... | 'test' | 363 | 4 |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 69 | 8 | assert | test_individual_boundaries | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | BCBase.from_data(g, 0, upper=True, data=bc) | modified | 0127d527b61aec2ea9262a3d7eb07d9dbdb9348b2ade5036c3c6f43bfb54f333 | assert|test_individual_boundaries|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0... | BCBase.from_data(g, 0, upper=True, data=bc) | 69 | 8 |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 77 | 4 | assert | test_individual_boundaries | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | bc.check_value_rank(1) | modified | 07dab2e1ee73269c99d870ae75ee09408d55976df7c6105a5a5864cd4d898edb | assert|test_individual_boundaries|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0... | None | 77 | 4 |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 100 | 4 | assert | test_virtual_points | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(3) | modified | ddef4939164ebc5d72c1c83d267938cd81dd14610d1e8dfd03cd7fc259bb0008 | assert|test_virtual_points|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) asser... | pytest.approx(3) | 100 | 4 |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 93 | 4 | assert | test_trackers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...solvers import ExplicitSolver
from ...co... | data.times | modified | b1e3b40390c288cb23524a39f13f11755bc3e02d97096b1d6965d33f5cfa9b3c | assert|test_trackers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...solvers import Explici... | data.times | 90 | 4 |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 123 | 4 | assert_* | test_callback_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...solvers import ExplicitSolver
from ...co... | data_tracker.data) | added | 6ea426e2421679f3614ba2653520c3b84ff28b91aefd00abefe935a6e9443989 | assert_*|test_callback_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...solvers impo... | null | null | null |
zwicker-group/py-pde | train | 8 | 72191b3521cc9a384cb4560b4ecd48de31c440d5 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 199 | 4 | assert | test_consistency_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...solvers import ExplicitSolver
from ...co... | con.info['t_end'] | added | a5f229c8cabdd6249be97f51b042567de9065b9379d6be22348aee07a5b0004d | assert|test_consistency_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE from ...solvers imp... | null | null | null |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_diffusion.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion.py | 16 | 4 | assert | test_diffusion_single | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import DiffusionPDE
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert | isinstance(str(eq), str) | modified | b978f5aaaa68eb5d9d83bcedd3cb9280bf8fac26f7a4be64c1527c9418fd84fa | assert|test_diffusion_single|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import DiffusionPDE from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = DiffusionPD... | isinstance(str(pde), str) | 16 | 4 |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_diffusion.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion.py | 37 | 4 | assert_* | test_simple_diffusion_value | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import DiffusionPDE
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert i... | grid.axes_coords[0]) | modified | a066f831bc0d92ffc92b8397f761da8629aa755abd2fa70d1c66184fd1daa59b | assert_*|test_simple_diffusion_value|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import DiffusionPDE from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = Dif... | grid.axes_coords[0]) | 37 | 4 |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_diffusion.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion.py | 49 | 4 | assert_* | test_simple_diffusion_flux_right | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from .. import DiffusionPDE
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert i... | 3 * grid.axes_coords[0]) | modified | 0f8734cae1ace4694ade75503d197e89c08671cedc2d055f21c88368ec1947bc | assert_*|test_simple_diffusion_flux_right|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from .. import DiffusionPDE from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq ... | 3 * grid.axes_coords[0]) | 49 | 4 |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 21 | 4 | assert | test_pde_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import *
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [KuramotoSivashinskyPDE, KPZInterfacePDE,
... | isinstance(str(eq), str) | modified | a6f1a6086df0efa548793b02d7479f860e95d23223a9e9346a4815c7edd3cba6 | assert|test_pde_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import * from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [KuramotoSivashinskyPDE, KPZInterfac... | isinstance(str(pde), str) | 21 | 4 |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 27 | 4 | assert | test_pde_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import *
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [KuramotoSivashinskyPDE, KPZInterfacePDE,
... | grid | modified | b6777e9b311fa63edd201b6a73d6a09a5ce2656671064d5b854b38d55de6134b | assert|test_pde_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import * from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [KuramotoSivashinskyPDE, KPZInterfac... | grid | 27 | 4 |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 29 | 4 | assert_* | test_pde_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import *
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [KuramotoSivashinskyPDE, KPZInterfacePDE,
... | rhs(state.data, 0)) | modified | 9514f65928ac955b7e455578668236ed896e3c8dc324ea7468104cad265586a3 | assert_*|test_pde_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import * from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [KuramotoSivashinskyPDE, KPZInterf... | rhs(state.data, 0)) | 29 | 4 |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_wave.py | train | zwicker-group/py-pde:pde/pdes/tests/test_wave.py | 23 | 4 | assert | test_wave_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import WavePDE
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
def test_wave_consistency(dim):
""" test some methods of the wave model """
eq = Wav... | grid | added | 0b852c1aaa9959cfa49e6b43f590ebce71eb4c35e3d14a545644c7f4e3ba8706 | assert|test_wave_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import WavePDE from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) def test_wave_consistency(dim): """ test some methods of the wave m... | null | null | null |
zwicker-group/py-pde | train | 9 | 8d93a1b1095c9a7a6c1bf18a534988f437c2c4ed | train | pde/pdes/tests/test_wave.py | train | zwicker-group/py-pde:pde/pdes/tests/test_wave.py | 25 | 4 | assert_* | test_wave_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import WavePDE
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
def test_wave_consistency(dim):
""" test some methods of the wave model """
eq = Wav... | rhs(state.data, 0)) | added | fccc09d49827d6562c6b2981a3ca201917d9560fcbae0e4b9f63c197c8cd6248 | assert_*|test_wave_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import WavePDE from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) def test_wave_consistency(dim): """ test some methods of the wave... | null | null | null |
zwicker-group/py-pde | train | 10 | 2a605a7c6f6a4d7608baad563839f18c4508f698 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 111 | 4 | assert | test_virtual_points | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(0) | modified | 3a78902591aa51ed2e3d6a4bc1a97c3b2f8eebc77179ab2d755ca81385ff05e7 | assert|test_virtual_points|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) asser... | pytest.approx(1) | 111 | 4 |
zwicker-group/py-pde | train | 10 | 2a605a7c6f6a4d7608baad563839f18c4508f698 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 119 | 4 | assert | test_virtual_points | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(1) | added | 66b37a2716fe548b0f0e16fd9a251029592d32de1f72200fd782c87a2d082abc | assert|test_virtual_points|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) asser... | null | null | null |
zwicker-group/py-pde | train | 10 | 2a605a7c6f6a4d7608baad563839f18c4508f698 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 135 | 16 | pytest.approx | test_mixed_condition | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | bc2.get_virtual_point(data)) | added | db8ad69d26bc2569a6cb86389cd4efbb0e4042644085bee0d366aa6313a26739 | pytest.approx|test_mixed_condition|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], ... | null | null | null |
zwicker-group/py-pde | train | 10 | 2a605a7c6f6a4d7608baad563839f18c4508f698 | train | pde/grids/boundaries/tests/test_local.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local.py | 140 | 4 | assert | test_mixed_condition | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..local import _get_arr_1d, BCBase
from ... import UnitGrid
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0)
assert ... | pytest.approx(-2) | added | 58bf216df235378b83ba03fcd6f03af57c0ca576227d87d031fd12b49615cabf | assert|test_mixed_condition|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..local import _get_arr_1d, BCBase from ... import UnitGrid def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _get_arr_1d(a, [1], 0) asse... | null | null | null |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 211 | 12 | assert | test_input_output | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | isinstance(repr(f), str) | modified | 6505ae9eb85565d7736cd3585830d538d148e17103451a44f954edfb3766fc48 | assert|test_input_output|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Cartesi... | isinstance(repr(f), str) | 211 | 8 |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 312 | 4 | assert | test_random_colored | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | np.allclose(f.average, 0) | modified | 7cbdee11c34f52858faaacf4a7b3c9180c1e4abf1f517ed9f3b116e07c3e04af | assert|test_random_colored|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Carte... | np.allclose(f.average, 0) | 312 | 4 |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 345 | 8 | assert_* | test_smoothing | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | expected) | modified | b6041e629a13d29f6ac45a2be5cb87a154cf6eca1d5a4b4dd545754d4d892cd8 | assert_*|test_smoothing|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Cartesia... | expected) | 345 | 8 |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 364 | 4 | assert_* | test_vector_from_scalars | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | [[[0, 1]], [[2, 3]]]) | modified | 31b12b72971694552e0b49269c13fb119a5d2a6da04c5702e9a7ce14bcafdf2a | assert_*|test_vector_from_scalars|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid... | [[[0, 1]], [[2, 3]]]) | 364 | 4 |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_tensorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_tensorial.py | 34 | 4 | assert_* | test_tensors | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..tensorial import Tensor2Field
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
def test_tensors():
""" test some tensor calculations """
grid... | field.data.trace()) | modified | ca3d2cc59eb1634cce52e49640cf797ce992280c3b335d670602f3736ead80fa | assert_*|test_tensors|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..tensorial import Tensor2Field from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid def test_tensors(): """ test some tensor calculations... | field.data.trace()) | 34 | 4 |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_tensorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_tensorial.py | 78 | 4 | assert | test_tensor_symmetrize | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..tensorial import Tensor2Field
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
def test_tensors():
""" test some tensor calculations """
grid... | np.all(tr.data == 0) | modified | 2e9db17863e98b25d1a628cbe33239f94fbeb140d5418b3b889866b793c628dc | assert|test_tensor_symmetrize|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..tensorial import Tensor2Field from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid def test_tensors(): """ test some tensor calc... | np.all(tr.data == 0) | 78 | 4 |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_tensorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_tensorial.py | 110 | 4 | assert_* | test_add_interpolated_tensor | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..tensorial import Tensor2Field
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
def test_tensors():
""" test some tensor calculations """
grid... | a / grid.cell_volumes[c]) | modified | 9809bf4b91cff95af13ee3cb57f9a3e99bad16784510d4cd38659e366db501e4 | assert_*|test_add_interpolated_tensor|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..tensorial import Tensor2Field from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid def test_tensors(): """ test some ten... | a / grid.cell_volumes[c]) | 110 | 4 |
zwicker-group/py-pde | train | 12 | 0deb8448d3ff9958412095a6fab8d3d7ea779da7 | train | pde/fields/tests/test_tensorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_tensorial.py | 122 | 4 | assert_* | test_tensor_invariants | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from .test_generic import iter_grids
from ..tensorial import Tensor2Field
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
def test_tensors():
""" test some tensor calculations """
grid... | f.to_scalar('invariant3').data) | added | 3cc525fa52819de56259147ade8736ce7ac818a3659fd02648485c2b1f767414 | assert_*|test_tensor_invariants|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from .test_generic import iter_grids from ..tensorial import Tensor2Field from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid def test_tensors(): """ test some tensor ca... | null | null | null |
zwicker-group/py-pde | train | 13 | 794fa1fae3aeb32f9661b97520eee4b2b23989f1 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 260 | 4 | assert_* | test_interpolation_values | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | f.data[..., 2, 2]) | added | 9525ac6c6bf3460513aead2366fbd90b669594754090f5792ee29137f9dcd24f | assert_*|test_interpolation_values|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGri... | null | null | null |
zwicker-group/py-pde | train | 13 | 794fa1fae3aeb32f9661b97520eee4b2b23989f1 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 318 | 12 | assert | test_random_normal | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | pytest.approx(s, rel=0.1, abs=0.1) | added | 36a6cc1b6ab3878494ab24d9be2bb43c53b466eec8d12b7a8bdf19fa8e833380 | assert|test_random_normal|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Cartes... | null | null | null |
zwicker-group/py-pde | train | 13 | 794fa1fae3aeb32f9661b97520eee4b2b23989f1 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 346 | 16 | assert_* | test_fluctuations | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | expect) | added | 68962628d5cac272dd0483485a93a34d7688bb92553d143ea0e4920843760109 | assert_*|test_fluctuations|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid, Carte... | null | null | null |
zwicker-group/py-pde | train | 13 | 794fa1fae3aeb32f9661b97520eee4b2b23989f1 | train | pde/fields/tests/test_generic.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic.py | 382 | 4 | assert_* | test_vector_from_scalars | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import tempfile
import numpy as np
from scipy import ndimage
import pytest
from .. import ScalarField, VectorField, Tensor2Field, FieldCollection
from ..base import FieldBase
from ...grids import (UnitGrid, CartesianGrid, PolarGrid, Sph... | [[[0, 1]], [[2, 3]]]) | added | bb9c3efd9a10e3ee0ece107bf8b898f79085b063ff55131436433271a5649370 | assert_*|test_vector_from_scalars|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import tempfile import numpy as np from scipy import ndimage import pytest from .. import ScalarField, VectorField, Tensor2Field, FieldCollection from ..base import FieldBase from ...grids import (UnitGrid... | null | null | null |
zwicker-group/py-pde | train | 14 | b016caa408c9d1870784a45fa768006e677f7b2b | train | pde/tools/tests/test_cuboid.py | test | zwicker-group/py-pde:pde/tools/tests/test_cuboid.py | 81 | 4 | assert | test_cuboid_add | '''
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
'''
import numpy as np
import pytest
from ..cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
""" test Cuboid class in 2d """
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == pytest.... | Cuboid([1], [2]) | added | 17da0cdba7a60c837ce7ce1178117bd9e35cda773d0a15bb8b47bff9debeccad | assert|test_cuboid_add|''' .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> ''' import numpy as np import pytest from ..cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """ test Cuboid class in 2d """ c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal == pytest.ap... | null | null | null |
zwicker-group/py-pde | train | 14 | b016caa408c9d1870784a45fa768006e677f7b2b | train | pde/tools/tests/test_cuboid.py | test | zwicker-group/py-pde:pde/tools/tests/test_cuboid.py | 83 | 4 | assert | test_cuboid_add | '''
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
'''
import numpy as np
import pytest
from ..cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
""" test Cuboid class in 2d """
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == pytest.... | Cuboid([1], [3]) | added | 4e5f8eba58baa726de1116a6d5eb7f0ede5526a6428fad68b397b79c159800ba | assert|test_cuboid_add|''' .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> ''' import numpy as np import pytest from ..cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """ test Cuboid class in 2d """ c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal == pytest.ap... | null | null | null |
zwicker-group/py-pde | train | 14 | b016caa408c9d1870784a45fa768006e677f7b2b | train | pde/tools/tests/test_cuboid.py | test | zwicker-group/py-pde:pde/tools/tests/test_cuboid.py | 107 | 8 | assert | test_cuboid_nd | '''
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
'''
import numpy as np
import pytest
from ..cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
""" test Cuboid class in 2d """
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == pytest.... | 2 * n * 3**(n-1) | added | ef33c26b4f081de2b4c21814fcad4c3d7d0a24a9b716853e31c42d9d436683c5 | assert|test_cuboid_nd|''' .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> ''' import numpy as np import pytest from ..cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """ test Cuboid class in 2d """ c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal == pytest.app... | null | null | null |
zwicker-group/py-pde | train | 14 | b016caa408c9d1870784a45fa768006e677f7b2b | train | pde/tools/tests/test_cuboid.py | test | zwicker-group/py-pde:pde/tools/tests/test_cuboid.py | 117 | 4 | assert | test_asanyarray_flags | '''
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
'''
import numpy as np
import pytest
from ..cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
""" test Cuboid class in 2d """
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == pytest.... | asanyarray_flags(a, np.double) | added | 427d07a965c747778bcf9764b75b5f43362cb901b783cbe26713643f4fbd1738 | assert|test_asanyarray_flags|''' .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> ''' import numpy as np import pytest from ..cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """ test Cuboid class in 2d """ c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal == pyt... | null | null | null |
zwicker-group/py-pde | train | 15 | e80e377c5259c397af64d75d38e0509b70158f65 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 38 | 4 | assert | test_plot_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers i... | output_file.exists() | modified | 62129719e79e74fc2efb6bdc6066bb2f823069f18395923597aae517ebaddab4 | assert|test_plot_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCah... | output_file.exists() | 38 | 4 |
zwicker-group/py-pde | train | 15 | e80e377c5259c397af64d75d38e0509b70158f65 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 97 | 8 | assert_* | test_trackers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers i... | state.integral) | added | 95be943b9b14893808fa98197188f4c378f4c4a0a24866b147df56758f8564b9 | assert_*|test_trackers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnP... | null | null | null |
zwicker-group/py-pde | train | 15 | e80e377c5259c397af64d75d38e0509b70158f65 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 123 | 4 | assert_* | test_callback_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers i... | data_tracker.data) | added | 6a481a24f0766edc9efcbb38d5dd35d6ab09cf3abceef6610bc53d82cc8f8b5d | assert_*|test_callback_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, Al... | null | null | null |
zwicker-group/py-pde | train | 15 | e80e377c5259c397af64d75d38e0509b70158f65 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 199 | 4 | assert | test_consistency_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid, CartesianGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers i... | con.info['t_end'] | modified | 04453ea74d006a0e90d8201424aa1a946ebbe9710c833b1cfe14fd52276b5636 | assert|test_consistency_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid, CartesianGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, A... | con.info['t_end'] | 199 | 4 |
zwicker-group/py-pde | train | 17 | 62995274dc356d5e6ef4769f6e34020e0a3350ee | train | pde/solvers/tests/test_generic.py | test | zwicker-group/py-pde:pde/solvers/tests/test_generic.py | 19 | 4 | assert | test_solver_registration | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...controller import Controller
from .. import ExplicitSolver, ImplicitSolver, ScipySolver
from .. import registered_solvers
def t... | solvers | modified | 9f2e788c3bc4a989ada87f97bc5fdb6fd88da35fac1b194ea378346dd8ca4dcb | assert|test_solver_registration|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...controller import Controller from .. import ExplicitSolver, ImplicitSolver, ScipySolver from .. impo... | solvers | 19 | 4 |
zwicker-group/py-pde | train | 17 | 62995274dc356d5e6ef4769f6e34020e0a3350ee | train | pde/solvers/tests/test_generic.py | test | zwicker-group/py-pde:pde/solvers/tests/test_generic.py | 20 | 4 | assert | test_solver_registration | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...controller import Controller
from .. import ExplicitSolver, ImplicitSolver, ScipySolver
from .. import registered_solvers
def t... | solvers | modified | 9d7b307babca82c52f27d5aca9ea83c118ccf4516f91c0f680672c545419cd5c | assert|test_solver_registration|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...controller import Controller from .. import ExplicitSolver, ImplicitSolver, ScipySolver from .. impo... | solvers | 20 | 4 |
zwicker-group/py-pde | train | 17 | 62995274dc356d5e6ef4769f6e34020e0a3350ee | train | pde/solvers/tests/test_generic.py | test | zwicker-group/py-pde:pde/solvers/tests/test_generic.py | 39 | 8 | assert_* | test_compare_solvers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from ...controller import Controller
from .. import ExplicitSolver, ImplicitSolver, ScipySolver
from .. import registered_solvers
def t... | s2.data) | modified | 71935e5056e19650986205629af17d39641de8e9c4af04bedde4bd05734238e4 | assert_*|test_compare_solvers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from ...controller import Controller from .. import ExplicitSolver, ImplicitSolver, ScipySolver from .. import... | s2.data) | 39 | 8 |
zwicker-group/py-pde | train | 17 | 62995274dc356d5e6ef4769f6e34020e0a3350ee | train | pde/tests/test_integration.py | train | zwicker-group/py-pde:pde/tests/test_integration.py | 38 | 4 | assert_* | test_inhomogeneous_bcs | '''
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
from ..common import * # @UnusedWildImport
from ..tools.misc import skipUnlessModule
@skipUnlessModule('h5py')
def test_writing_to_storage():
""" test whet... | 0.9 * np.sin(data['data_x'])) | added | 7cbcb20a4ec2cedd83e0ccc17902bc1eb188e1a48de314c57144b2672d98dbd4 | assert_*|test_inhomogeneous_bcs|''' Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np from ..common import * # @UnusedWildImport from ..tools.misc import skipUnlessModule @skipUnlessModule('h5py') def test_writing_to_stora... | null | null | null |
zwicker-group/py-pde | train | 18 | c40ac90f320b3ef0d0a9f458c28eb32083235097 | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 22 | 8 | assert | test_colored_noise | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from scipy import stats
from ..spectral import make_colored_noise, spectral_density
from ...grids import UnitGrid, CartesianGrid
def test_colored_noise():
""" test the implementation of ... | 2e-5 | modified | 8d09826ad52c9d02c3ea50baaa0ab91278bf64b56cb896bb76e6f7be258adfdb | assert|test_colored_noise|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from scipy import stats from ..spectral import make_colored_noise, spectral_density from ...grids import UnitGrid, CartesianGrid def test_colored_noise(): """ test the implementation of the colored... | 1e-4 | 22 | 8 |
zwicker-group/py-pde | train | 18 | c40ac90f320b3ef0d0a9f458c28eb32083235097 | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 53 | 12 | assert | test_noise_scaling | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from scipy import stats
from ..spectral import make_colored_noise, spectral_density
from ...grids import UnitGrid, CartesianGrid
def test_colored_noise():
""" test the implementation of ... | pytest.approx(0) | modified | 820bed741876cb0fa79f334cb91723a17749c5131eb00baaa01139224eebb83a | assert|test_noise_scaling|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from scipy import stats from ..spectral import make_colored_noise, spectral_density from ...grids import UnitGrid, CartesianGrid def test_colored_noise(): """ test the implementation of the colored... | pytest.approx(0) | 53 | 12 |
zwicker-group/py-pde | train | 18 | c40ac90f320b3ef0d0a9f458c28eb32083235097 | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 60 | 4 | assert_* | test_noise_scaling | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from scipy import stats
from ..spectral import make_colored_noise, spectral_density
from ...grids import UnitGrid, CartesianGrid
def test_colored_noise():
""" test the implementation of ... | *result) | modified | d0ed3d54332bdacf773b3761a2a76346cb3c6bd4515a234dab7956b4f098bceb | assert_*|test_noise_scaling|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from scipy import stats from ..spectral import make_colored_noise, spectral_density from ...grids import UnitGrid, CartesianGrid def test_colored_noise(): """ test the implementation of the color... | *result) | 60 | 4 |
zwicker-group/py-pde | train | 19 | 6170e0fd6dbf76c0dd8b123f4e74ff395df960f0 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 23 | 4 | assert | test_pde_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ... import pdes
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE,
... | isinstance(str(eq), str) | modified | 1d61207193fcacc10e817566c982a70d8a4604162df028027eb854490bb01529 | assert|test_pde_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ... import pdes from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE, pd... | isinstance(str(eq), str) | 21 | 4 |
zwicker-group/py-pde | train | 19 | 6170e0fd6dbf76c0dd8b123f4e74ff395df960f0 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 24 | 4 | assert | test_pde_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ... import pdes
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE,
... | isinstance(repr(eq), str) | modified | 0d02856fc690fd095028b3522e081e5b23bd582058832d296ef3f20921ab0018 | assert|test_pde_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ... import pdes from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE, pd... | isinstance(repr(eq), str) | 22 | 4 |
zwicker-group/py-pde | train | 19 | 6170e0fd6dbf76c0dd8b123f4e74ff395df960f0 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 29 | 4 | assert | test_pde_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ... import pdes
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE,
... | grid | modified | b771549fd177e9c81ee3660e5dda0daca83811729e34d9342d7ec762c6c7f802 | assert|test_pde_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ... import pdes from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE, pd... | grid | 27 | 4 |
zwicker-group/py-pde | train | 19 | 6170e0fd6dbf76c0dd8b123f4e74ff395df960f0 | train | pde/pdes/tests/test_generic.py | train | zwicker-group/py-pde:pde/pdes/tests/test_generic.py | 31 | 4 | assert_* | test_pde_consistency | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ... import pdes
from ...grids import UnitGrid
from ...fields import ScalarField
@pytest.mark.parametrize('dim', [1, 2])
@pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE,
... | rhs(state.data, 0)) | modified | bcabc4c97349943749e555882fa193555a8e4f379ee9cc2be4e94ab6c0d5401a | assert_*|test_pde_consistency|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ... import pdes from ...grids import UnitGrid from ...fields import ScalarField @pytest.mark.parametrize('dim', [1, 2]) @pytest.mark.parametrize('pde_class', [pdes.KuramotoSivashinskyPDE, ... | rhs(state.data, 0)) | 29 | 4 |
zwicker-group/py-pde | train | 20 | dc242fef72e22e4d71e93bc321a4c97806c1215b | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 38 | 4 | assert | test_plot_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers import ExplicitS... | output_file.exists() | modified | 53c9ef52eed984650a047b0953c4e50459090683538e014d0ce12bb37c265d64 | assert|test_plot_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE from ...so... | output_file.exists() | 38 | 4 |
zwicker-group/py-pde | train | 20 | dc242fef72e22e4d71e93bc321a4c97806c1215b | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 97 | 8 | assert_* | test_trackers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers import ExplicitS... | state.integral) | modified | e5e424e4e31334dbdc551921bcd58d95ce90477f95f44ba5ad055b8811ceee80 | assert_*|test_trackers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE from ...solv... | state.integral) | 97 | 8 |
zwicker-group/py-pde | train | 20 | dc242fef72e22e4d71e93bc321a4c97806c1215b | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 123 | 4 | assert_* | test_callback_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers import ExplicitS... | data_tracker.data) | modified | f5b5e9edd84a80b026c63ac6240cb0d3919c85af974f41a018579f9e5b009735 | assert_*|test_callback_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE from... | data_tracker.data) | 123 | 4 |
zwicker-group/py-pde | train | 20 | dc242fef72e22e4d71e93bc321a4c97806c1215b | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 188 | 4 | assert | test_consistency_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers import ExplicitS... | con.info['t_end'] | added | 6a1164c52b148920077f3f2091f5232f3ce3e37a8b61254db7499db60fcd7a24 | assert|test_consistency_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE fro... | null | null | null |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/solvers/tests/test_explicit.py | val | zwicker-group/py-pde:pde/solvers/tests/test_explicit.py | 50 | 4 | assert | test_stochastic_solvers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from .. import Controller, ExplicitSolver
def test_compare_explicit():
""" test explicit solvers """
grid = UnitG... | solver2.info['stochastic'] | modified | ef4579e4a8d74cfea9ac1fbc19ba290a0eef5e215978358b9d034a5ccc9a3539 | assert|test_stochastic_solvers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from .. import Controller, ExplicitSolver def test_compare_explicit(): """ test explicit solver... | solver2.info['stochastic'] | 51 | 4 |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/solvers/tests/test_explicit.py | val | zwicker-group/py-pde:pde/solvers/tests/test_explicit.py | 59 | 9 | pytest.raises | test_unsupported_stochastic_solvers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from .. import Controller, ExplicitSolver
def test_compare_explicit():
""" test explicit solvers """
grid = UnitG... | RuntimeError) | modified | c37017e0f9400eee1ded6589bfd077c7209ea00302d49b3fcea2803fab45920a | pytest.raises|test_unsupported_stochastic_solvers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from .. import Controller, ExplicitSolver def test_compare_explicit(): """ t... | RuntimeError) | 60 | 9 |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/solvers/tests/test_generic.py | test | zwicker-group/py-pde:pde/solvers/tests/test_generic.py | 18 | 4 | assert | test_solver_registration | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from .. import Controller, ExplicitSolver, ImplicitSolver, ScipySolver
from .. import registered_solvers
def test_solver_registration()... | solvers | modified | 24e97e6c1a55cb5fa28ca7b1bd34028e3edac8aa8882c29e220c204886c052b7 | assert|test_solver_registration|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from .. import Controller, ExplicitSolver, ImplicitSolver, ScipySolver from .. import registered_solvers def... | solvers | 19 | 4 |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/solvers/tests/test_generic.py | test | zwicker-group/py-pde:pde/solvers/tests/test_generic.py | 19 | 4 | assert | test_solver_registration | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from .. import Controller, ExplicitSolver, ImplicitSolver, ScipySolver
from .. import registered_solvers
def test_solver_registration()... | solvers | modified | 95a2694ce3a9e6b0dbb7d9d2a10bddfd3197eaed5516652c072b9218179642dc | assert|test_solver_registration|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from .. import Controller, ExplicitSolver, ImplicitSolver, ScipySolver from .. import registered_solvers def... | solvers | 20 | 4 |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/solvers/tests/test_scipy.py | train | zwicker-group/py-pde:pde/solvers/tests/test_scipy.py | 26 | 4 | assert_* | test_no_dt | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
from ...fields import ScalarField
from ...grids import UnitGrid
from ...pdes import DiffusionPDE
from .. import Controller, ScipySolver
def test_no_dt():
""" test scipy solver without timestep """
grid = UnitGrid([16])
f... | s2.data) | modified | fb45239d67f8f4a42ed56f057a658df2514a57dc55302f02083e0b9d4d15dd9b | assert_*|test_no_dt|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np from ...fields import ScalarField from ...grids import UnitGrid from ...pdes import DiffusionPDE from .. import Controller, ScipySolver def test_no_dt(): """ test scipy solver without timestep """ grid = UnitGrid([16]... | s2.data) | 27 | 4 |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/tests/test_integration.py | train | zwicker-group/py-pde:pde/tests/test_integration.py | 38 | 4 | assert_* | test_inhomogeneous_bcs | '''
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import numpy as np
from .. import UnitGrid, CartesianGrid, ScalarField, DiffusionPDE, FileStorage
from ..tools.misc import skipUnlessModule
@skipUnlessModule('h5py')
def test_writ... | 0.9 * np.sin(data['data_x'])) | modified | 8fc3735f7198c0162ece82e47063dc3fdf6aebf91173ce89a3c6da503385103f | assert_*|test_inhomogeneous_bcs|''' Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import numpy as np from .. import UnitGrid, CartesianGrid, ScalarField, DiffusionPDE, FileStorage from ..tools.misc import skipUnlessModule @skipUnlessModu... | 0.9 * np.sin(data['data_x'])) | 38 | 4 |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 96 | 8 | assert_* | test_trackers | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers import ExplicitS... | state.integral) | modified | 3176b9fa4ce2e598290f21783f9b3d32640c62ce9afe8c7e8c8ff9b2bc5b2a7f | assert_*|test_trackers|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE from ...solv... | state.integral) | 97 | 8 |
zwicker-group/py-pde | train | 21 | c70199c71e7d9908f5505887239c5b33f207b7e9 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 122 | 4 | assert_* | test_callback_tracker | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import os
from unittest import mock
import numpy as np
import pytest
from .. import trackers
from ...grids import UnitGrid
from ...fields import ScalarField
from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE
from ...solvers import ExplicitS... | data_tracker.data) | modified | ebb3932bd60b394cf1fbb72d8cf909471fa67d251bb1f289b1ae8b40e2a02529 | assert_*|test_callback_tracker|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import os from unittest import mock import numpy as np import pytest from .. import trackers from ...grids import UnitGrid from ...fields import ScalarField from ...pdes import DiffusionPDE, CahnHilliardPDE, AllenCahnPDE from... | data_tracker.data) | 123 | 4 |
zwicker-group/py-pde | train | 22 | 8188a0f0b82b8d89742c371ee8413b9ce62f4eb4 | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 90 | 4 | assert_* | test_simulation_persistence | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...grids.base import GridBase
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
... | [0, 0.05, 0.1]) | modified | 7d55ac7f92230aebe137eff8fd85c4f9df2a5195378db9fe0775959e0e0d3975 | assert_*|test_simulation_persistence|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...grids.base import GridBase from ...fields import ScalarField from ...pdes import DiffusionPDE from ...too... | [0, 0.05, 0.1]) | 87 | 4 |
zwicker-group/py-pde | train | 22 | 8188a0f0b82b8d89742c371ee8413b9ce62f4eb4 | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 118 | 17 | pytest.raises | test_storage_fixed_size | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...grids.base import GridBase
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
... | (TypeError, ValueError)) | added | fcdc3071f5eaaad5058630d18fa40cb4abd6a1029ea89741b369759a9f0f432a | pytest.raises|test_storage_fixed_size|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...grids.base import GridBase from ...fields import ScalarField from ...pdes import DiffusionPDE from ...to... | null | null | null |
zwicker-group/py-pde | train | 22 | 8188a0f0b82b8d89742c371ee8413b9ce62f4eb4 | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 138 | 4 | assert | test_appending | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...grids.base import GridBase
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
... | 'writing' | added | 7e5577d317d8ff4098d4cf2935f39e08ed75150e89b41c146d5d89ac2990a0dc | assert|test_appending|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...grids.base import GridBase from ...fields import ScalarField from ...pdes import DiffusionPDE from ...tools.misc import ... | null | null | null |
zwicker-group/py-pde | train | 22 | 8188a0f0b82b8d89742c371ee8413b9ce62f4eb4 | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 173 | 4 | assert_* | test_keep_opened | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...grids.base import GridBase
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
... | np.arange(2)) | added | 7e5e01a5d1a638c82e5b57329844dd32b5aeb8784d557da54ea00b581a98d44b | assert_*|test_keep_opened|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...grids.base import GridBase from ...fields import ScalarField from ...pdes import DiffusionPDE from ...tools.misc imp... | null | null | null |
zwicker-group/py-pde | train | 23 | 403dfc323939bdbd7292eca636c0e1709b480d4f | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 167 | 4 | assert | test_keep_opened | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...grids.base import GridBase
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
... | storage2.times | modified | 2d63d6a8d40cffc982c7c0943d46a37db7cb3ef5a87de07a18f728e2e431d678 | assert|test_keep_opened|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...grids.base import GridBase from ...fields import ScalarField from ...pdes import DiffusionPDE from ...tools.misc impor... | storage2.times | 165 | 4 |
zwicker-group/py-pde | train | 23 | 403dfc323939bdbd7292eca636c0e1709b480d4f | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 168 | 4 | assert | test_keep_opened | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...grids.base import GridBase
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
... | storage2.data | modified | e0f4363068390f27d791651fe596d2337c089219c93a4021ac6cbe7ed189d1c6 | assert|test_keep_opened|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...grids.base import GridBase from ...fields import ScalarField from ...pdes import DiffusionPDE from ...tools.misc impor... | storage2.data | 166 | 4 |
zwicker-group/py-pde | train | 23 | 403dfc323939bdbd7292eca636c0e1709b480d4f | train | pde/storage/tests/test_file.py | train | zwicker-group/py-pde:pde/storage/tests/test_file.py | 175 | 4 | assert_* | test_keep_opened | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import tempfile
import pytest
import numpy as np
from .. import FileStorage
from ...grids import UnitGrid
from ...grids.base import GridBase
from ...fields import ScalarField
from ...pdes import DiffusionPDE
from ...tools.misc import skipUnlessModule
... | np.arange(3)) | modified | 17620f9aa92542a15c522966e42b74796e76feb9feb3347b6a59ef6d6b9f9cf2 | assert_*|test_keep_opened|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import tempfile import pytest import numpy as np from .. import FileStorage from ...grids import UnitGrid from ...grids.base import GridBase from ...fields import ScalarField from ...pdes import DiffusionPDE from ...tools.misc imp... | np.arange(2)) | 173 | 4 |
zwicker-group/py-pde | train | 24 | da615c8eccf501a4d3396e366d2f74b3ba00148c | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 29 | 9 | pytest.raises | test_parameters | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
class Test1... | ValueError) | added | 19f3c1bacc385a5614142a26e937b2a235495ad7f464aba947f19d9290577684 | pytest.raises|test_parameters|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ class Test1(Parameterized)... | null | null | null |
zwicker-group/py-pde | train | 24 | da615c8eccf501a4d3396e366d2f74b3ba00148c | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 59 | 4 | assert | test_parameters | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
class Test1... | {'a', 'b', 'c'} | added | c1e40ef666ba3c1745645202c1b83e17ab3d4789cc8464bf471e5bb8490704ca | assert|test_parameters|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ class Test1(Parameterized): param... | null | null | null |
zwicker-group/py-pde | train | 24 | da615c8eccf501a4d3396e366d2f74b3ba00148c | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 93 | 4 | assert | test_obsolete_parameter | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
class Test1... | {'a': 1, 'b': 2} | added | 59bf5cde56e43d98535cf48981fae71a357982bc3fceff7678dada5a4872736e | assert|test_obsolete_parameter|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ class Test1(Parameterized... | null | null | null |
zwicker-group/py-pde | train | 24 | da615c8eccf501a4d3396e366d2f74b3ba00148c | train | pde/tools/tests/test_parameters.py | train | zwicker-group/py-pde:pde/tools/tests/test_parameters.py | 104 | 8 | assert | test_get_all_parameters | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import itertools
import pytest
from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter,
Parameterized, get_all_parameters)
def test_parameters():
""" test mixing Parameterized """
class Test1... | p2.keys() | added | 2f523d311ed9570cd39a485151351e650b5f3331b99f5851a163ba4f353ace68 | assert|test_get_all_parameters|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import itertools import pytest from ..parameters import (Parameter, DeprecatedParameter, ObsoleteParameter, Parameterized, get_all_parameters) def test_parameters(): """ test mixing Parameterized """ class Test1(Parameterized... | null | null | null |
zwicker-group/py-pde | train | 25 | b2d60c08c57b3d7ba8752a9b0f5707b4222f9599 | train | pde/storage/tests/test_memory.py | train | zwicker-group/py-pde:pde/storage/tests/test_memory.py | 27 | 4 | assert_* | test_memory_storage | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import MemoryStorage
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, Tensor2Field, FieldCollection
def test_memory_storage():
""" test methods specific to memory st... | np.arange(4)) | modified | 2d0ad6a8cd3cd103c41400c0fa7b285f532f0e5fec374e87d62c8d8ae43ab2bd | assert_*|test_memory_storage|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import MemoryStorage from ...grids import UnitGrid from ...fields import ScalarField, VectorField, Tensor2Field, FieldCollection def test_memory_storage(): """ test methods specific to m... | np.arange(4)) | 26 | 4 |
zwicker-group/py-pde | train | 25 | b2d60c08c57b3d7ba8752a9b0f5707b4222f9599 | train | pde/storage/tests/test_memory.py | train | zwicker-group/py-pde:pde/storage/tests/test_memory.py | 46 | 8 | assert | test_field_type_guessing | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import MemoryStorage
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, Tensor2Field, FieldCollection
def test_memory_storage():
""" test methods specific to memory st... | field | added | 7b79b69b222b91ffd420181627642df9bce37238b314d4c0e5abaa9885d62dc3 | assert|test_field_type_guessing|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import MemoryStorage from ...grids import UnitGrid from ...fields import ScalarField, VectorField, Tensor2Field, FieldCollection def test_memory_storage(): """ test methods specific t... | null | null | null |
zwicker-group/py-pde | train | 25 | b2d60c08c57b3d7ba8752a9b0f5707b4222f9599 | train | pde/storage/tests/test_memory.py | train | zwicker-group/py-pde:pde/storage/tests/test_memory.py | 57 | 9 | pytest.raises | test_field_type_guessing | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from .. import MemoryStorage
from ...grids import UnitGrid
from ...fields import ScalarField, VectorField, Tensor2Field, FieldCollection
def test_memory_storage():
""" test methods specific to memory st... | RuntimeError) | added | b325cde66148e69e25035f58f444ee42cf7c22be00e80463451f17c10ccc2512 | pytest.raises|test_field_type_guessing|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from .. import MemoryStorage from ...grids import UnitGrid from ...fields import ScalarField, VectorField, Tensor2Field, FieldCollection def test_memory_storage(): """ test methods spe... | null | null | null |
zwicker-group/py-pde | train | 26 | 66979198579f7ab127267ac05147cb9d58b7518d | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 50 | 8 | assert | test_colored_noise | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from scipy import stats, fftpack
from ..spectral import make_colored_noise
from ...grids import UnitGrid, CartesianGrid
def spectral_density(data, dx=1.):
""" calculate the power spectral density of a field
... | 2e-5 | added | c8da93362b883eb191e8c43a0c56ecb61246e4be59199986cae2668ed12af7c5 | assert|test_colored_noise|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from scipy import stats, fftpack from ..spectral import make_colored_noise from ...grids import UnitGrid, CartesianGrid def spectral_density(data, dx=1.): """ calculate the power spectral density o... | null | null | null |
zwicker-group/py-pde | train | 26 | 66979198579f7ab127267ac05147cb9d58b7518d | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 81 | 12 | assert | test_noise_scaling | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from scipy import stats, fftpack
from ..spectral import make_colored_noise
from ...grids import UnitGrid, CartesianGrid
def spectral_density(data, dx=1.):
""" calculate the power spectral density of a field
... | pytest.approx(0) | added | 3c5c02fa8e3901e578c3bd75f05fa8357eabb53b159fbbfc90c787bbc6960996 | assert|test_noise_scaling|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from scipy import stats, fftpack from ..spectral import make_colored_noise from ...grids import UnitGrid, CartesianGrid def spectral_density(data, dx=1.): """ calculate the power spectral density o... | null | null | null |
zwicker-group/py-pde | train | 26 | 66979198579f7ab127267ac05147cb9d58b7518d | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 88 | 4 | assert_* | test_noise_scaling | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import pytest
import numpy as np
from scipy import stats, fftpack
from ..spectral import make_colored_noise
from ...grids import UnitGrid, CartesianGrid
def spectral_density(data, dx=1.):
""" calculate the power spectral density of a field
... | *result) | added | c2a8c30d90bb32722675823b436a69e2f11c5c7e68109c04791d3f7d51c96992 | assert_*|test_noise_scaling|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import pytest import numpy as np from scipy import stats, fftpack from ..spectral import make_colored_noise from ...grids import UnitGrid, CartesianGrid def spectral_density(data, dx=1.): """ calculate the power spectral density... | null | null | null |
zwicker-group/py-pde | train | 27 | 8dcd3ef9bb3a10da36be4b6919cc32330835ad8f | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 20 | 4 | assert_* | test_vectors | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
def test_vectors():
""" test some vector fields """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3,... | (1, 1)) | modified | 77be24a1161cf14e2fcc7a360e74467f2a9228586db02241d389b8401e2d520d | assert_*|test_vectors|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid def test_vectors(): """ test some vector fields """ grid = CartesianGrid([[0.1, 0.3], [-2, ... | (1, 1)) | 18 | 4 |
zwicker-group/py-pde | train | 27 | 8dcd3ef9bb3a10da36be4b6919cc32330835ad8f | train | pde/fields/tests/test_vectorial.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial.py | 61 | 4 | assert | test_divergence | '''
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
'''
import numpy as np
import pytest
from ..vectorial import VectorField
from ..base import FieldBase
from ...grids import UnitGrid, CartesianGrid
def test_vectors():
""" test some vector fields """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3,... | (16, 16) | modified | bd4844109f8bf56b55cce942ac9e73d07076e0c29a1d6ad0bf7c3c4ef71c99ea | assert|test_divergence|''' .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> ''' import numpy as np import pytest from ..vectorial import VectorField from ..base import FieldBase from ...grids import UnitGrid, CartesianGrid def test_vectors(): """ test some vector fields """ grid = CartesianGrid([[0.1, 0.3], [-2,... | (16, 16) | 59 | 4 |
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