repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 156 | 53f86fe2f54a50147d70a7b63c9f331013091a49 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 43 | 9 | pytest.raises | test_config_modes | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert any("numba.parallel_thres... | KeyError) | added | 72ea0b0235b264f714377f8d0570159284df9f11d8934a395853aba35adf1e82 | pytest.raises|test_config_modes|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert any("numba.parallel... | null | null | null |
zwicker-group/py-pde | train | 156 | 53f86fe2f54a50147d70a7b63c9f331013091a49 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 78 | 4 | assert | test_config_special_values | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert any("numba.parallel_thres... | NUMBA_PARALLEL | added | 5969d9db55e7120bd1d0757ee87a2bcc05f946d740135fbc15670c4037369082 | assert|test_config_special_values|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert any("numba.parall... | null | null | null |
zwicker-group/py-pde | train | 157 | d24dffc220801053bdd1100e81f0fd78bcee5d58 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 20 | 4 | assert | test_config | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert any("numba.parallel_thres... | isinstance(repr(c), str) | added | 0dda806e5029f728d94bb4a18bc2cffcbd13cf401478abf558223cd8279cb87e | assert|test_config|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert any("numba.parallel_threshold" =... | null | null | null |
zwicker-group/py-pde | train | 157 | d24dffc220801053bdd1100e81f0fd78bcee5d58 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 56 | 9 | pytest.raises | test_config_modes | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert any("numba.parallel_thres... | KeyError) | added | f290da6a79a80562adcf37a95035d65f40eed32c1a63d5aa9a563035f87e674d | pytest.raises|test_config_modes|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert any("numba.parallel... | null | null | null |
zwicker-group/py-pde | train | 157 | d24dffc220801053bdd1100e81f0fd78bcee5d58 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 77 | 4 | assert | test_config_special_values | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert any("numba.parallel_thres... | NUMBA_PARALLEL | added | db5dede45fb61b5e5a1ef7320e82da1f86b376a9716f3fabb6ca8a84c5122e11 | assert|test_config_special_values|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert any("numba.parall... | null | null | null |
zwicker-group/py-pde | train | 157 | d24dffc220801053bdd1100e81f0fd78bcee5d58 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 85 | 4 | assert | test_config_special_values | """
.. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu>
"""
import pytest
from pde.tools.config import Config
def test_config():
""" test configuration system """
c = Config()
assert c["numba.parallel_threshold"] > 0
assert "numba.parallel_threshold" in c
assert any("numba.parallel_thres... | NUMBA_PARALLEL | added | 9fd2cba409ea732777c3f2c2ec0b1693b02e3bf3e598b17a39ec92128394267f | assert|test_config_special_values|""" .. codeauthor:: David Zwicker <dzwicker@seas.harvard.edu> """ import pytest from pde.tools.config import Config def test_config(): """ test configuration system """ c = Config() assert c["numba.parallel_threshold"] > 0 assert "numba.parallel_threshold" in c assert any("numba.parall... | null | null | null |
zwicker-group/py-pde | train | 158 | 9502ea07d5f35ef9f6b0f38f5b69f5eceddb8ba9 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 148 | 8 | assert | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | "new label" | added | 2645d043ed5ad76af46b8bb2101c346d0e04d3923ec26f9a3be956d047140424 | assert|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import mo... | null | null | null |
zwicker-group/py-pde | train | 158 | 9502ea07d5f35ef9f6b0f38f5b69f5eceddb8ba9 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 170 | 8 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | storage_cls is None or s2 is out | modified | 8c728f080e0d691a144dd1cd0d3a1028719528dc88eef650cc95f2a08bf1b98b | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import module_... | storage_cls is None or s2 is out | 168 | 8 |
zwicker-group/py-pde | train | 158 | 9502ea07d5f35ef9f6b0f38f5b69f5eceddb8ba9 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 172 | 8 | assert_* | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | s1.times) | modified | d8d2023c3e646248215cc17910f948bce1f3a64d1d19a89744e422e51aeea82f | assert_*|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import modul... | s1.times) | 170 | 8 |
zwicker-group/py-pde | train | 158 | 9502ea07d5f35ef9f6b0f38f5b69f5eceddb8ba9 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 204 | 8 | assert | test_storage_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | s1[0] | modified | 365d6f3894d3c148f22fe341cba49935957855d63acc01b807a49d627451be2f | assert|test_storage_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import module_a... | s1[0] | 202 | 8 |
zwicker-group/py-pde | train | 159 | 9de19714ef97b8b9620cecdbfccdde4e41652dd2 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 143 | 8 | assert | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | storage.has_collection | modified | e2021adb0f874200c0f02e1e1b59523f6c9497d687bd4713926c54ee42bc70cb | assert|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import mo... | storage.has_collection | 143 | 8 |
zwicker-group/py-pde | train | 159 | 9de19714ef97b8b9620cecdbfccdde4e41652dd2 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 171 | 8 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | storage_cls is None or s2 is out | modified | 284527b7f301d8c8a7bd43ede4902e678135f4a6f63081118e8a8e5d25abd92b | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import module_... | storage_cls is None or s2 is out | 170 | 8 |
zwicker-group/py-pde | train | 159 | 9de19714ef97b8b9620cecdbfccdde4e41652dd2 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 173 | 8 | assert_* | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | s1.times) | modified | 8e0e9aad6e6b2fe0e43a48559715f45987e31434bc86ac90c951c5ea3c7da113 | assert_*|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import modul... | s1.times) | 172 | 8 |
zwicker-group/py-pde | train | 159 | 9de19714ef97b8b9620cecdbfccdde4e41652dd2 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 205 | 8 | assert | test_storage_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | s1[0] | modified | 500bd245bd33534b2e7bf90f3a132d8a637e5063469303e5136ee18aa3874116 | assert|test_storage_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import module_a... | s1[0] | 204 | 8 |
zwicker-group/py-pde | train | 160 | d6baeb99b6ef55f60cf3fdf88709e63acaf38bbb | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 62 | 4 | assert | test_collections | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sin... | fields | modified | 399206d240bf7765ec5a6d2abc639400b78b96af682b8a7e14d04dbccae04561 | assert|test_collections|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields(example_gri... | fields | 60 | 4 |
zwicker-group/py-pde | train | 160 | d6baeb99b6ef55f60cf3fdf88709e63acaf38bbb | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 154 | 4 | assert | test_scalar_random_uniform | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sin... | not np.allclose(fc[0].data, fc[1].data) | modified | a188035f899a168e44d17dea263a448255ef4dbb1281484e92baea22d6565ab8 | assert|test_scalar_random_uniform|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields(e... | not np.allclose(fc[0].data, fc[1].data) | 152 | 4 |
zwicker-group/py-pde | train | 160 | d6baeb99b6ef55f60cf3fdf88709e63acaf38bbb | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 168 | 4 | assert | test_from_scalar_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sin... | grid | modified | 3454f9d16b73bc651313e391e87a9ccc42a11671d18fef6f729cf54c5e752b59 | assert|test_from_scalar_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields... | grid | 166 | 4 |
zwicker-group/py-pde | train | 160 | d6baeb99b6ef55f60cf3fdf88709e63acaf38bbb | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 223 | 4 | assert | test_collection_1_field | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sin... | ["a"] | modified | 34ba9d335555da771347db88ae6dc74afb91edbea423d49a0442550be884c0f3 | assert|test_collection_1_field|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields(exam... | ["a"] | 221 | 4 |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/grids/tests/test_cylindrical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical_grids.py | 42 | 8 | assert | test_cylindrical_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
... | grid.operators | modified | f3ce7221df7d81cb67ef0efafc2c49172e55edbcd0fe46b5f3ec806f36a71bec | assert|test_cylindrical_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalGrid, ScalarField from pde.grids.boundaries.local import NeumannBC def test_cylindrical_grid(): """ test simple cylindrical grid """ for periodic in [Tr... | grid.operators | 40 | 8 |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/tools/tests/test_cache.py | train | zwicker-group/py-pde:pde/tools/tests/test_cache.py | 152 | 4 | assert | test_serializer | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import collections
import copy
import sys
import numpy as np
import pytest
from pde.tools import cache
def deep_getsizeof(obj, ids=None):
"""Find the memory footprint of a Python object
This is a recursive function that drills down a Python o... | encode(1) | modified | baa63fe83a9998d8c1bc0dd92ac4472925cf74246e28b424def817c7d6bf5ae6 | assert|test_serializer|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import collections import copy import sys import numpy as np import pytest from pde.tools import cache def deep_getsizeof(obj, ids=None): """Find the memory footprint of a Python object This is a recursive function that drills down a... | encode(1) | 152 | 4 |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 12 | 4 | assert | test_environment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.tools.config import Config, environment
def test_environment():
""" test the environment function """
assert | isinstance(environment(), dict) | added | e57b2336c345cbc03b196f02b325a8a58c4045a270da372e58701a8a87d0c44d | assert|test_environment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.tools.config import Config, environment def test_environment(): """ test the environment function """ assert | null | null | null |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/tools/tests/test_config.py | train | zwicker-group/py-pde:pde/tools/tests/test_config.py | 82 | 4 | assert | test_config_special_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.tools.config import Config, environment
def test_environment():
""" test the environment function """
assert isinstance(environment(), dict)
def test_config():
""" test configuration system """
c = Config()
... | NUMBA_PARALLEL | modified | 1c129977e51d1ef6a4138e24e025ce8e7c42f1cdacc5f5105e2d4c8ec5575357 | assert|test_config_special_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.tools.config import Config, environment def test_environment(): """ test the environment function """ assert isinstance(environment(), dict) def test_config(): """ test configuration system """ c = C... | NUMBA_PARALLEL | 80 | 4 |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/tools/tests/test_cuboid.py | test | zwicker-group/py-pde:pde/tools/tests/test_cuboid.py | 76 | 4 | assert | test_cuboid_add | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
""" test Cuboid class in 2d """
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == py... | Cuboid([1], [2]) | modified | 3ea9bca8eb0e39fd42ee18444c60a2778ede019aa48980d78f110ce37e9ccc9b | assert|test_cuboid_add|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """ test Cuboid class in 2d """ c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal == pyt... | Cuboid([1], [2]) | 76 | 4 |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/tools/tests/test_misc.py | val | zwicker-group/py-pde:pde/tools/tests/test_misc.py | 57 | 4 | assert | test_hybridmethod | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from pde.tools import misc
def test_ensure_directory_exists(tmp_path):
""" tests the ensure_directory_exists function """
# create temporary name
path = tmp_path / "test_ensure_directo... | "instance" | added | 228627aebe4679336562e33be055b73434e56edee5a3d32ffd584a4c65d3dcd0 | assert|test_hybridmethod|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from pde.tools import misc def test_ensure_directory_exists(tmp_path): """ tests the ensure_directory_exists function """ # create temporary name path = tmp_path / "test_ensure... | null | null | null |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/tools/tests/test_output.py | train | zwicker-group/py-pde:pde/tools/tests/test_output.py | 19 | 4 | assert | test_in_jupyter_notebook | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
from pde.tools import output
def test_progress_bars():
""" test progress bars """
for pb_cls in [output.SimpleProgress, output.get_progress_bar_class()]:
tot = 0
for i in pb_cls(range(4)):
tot += i
assert tot ... | isinstance(output.in_jupyter_notebook(), bool) | modified | 4ee8f771ea18676c88154a9c2e982e04ecc67db25598e4f2159e413bc0c230d0 | assert|test_in_jupyter_notebook|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ from pde.tools import output def test_progress_bars(): """ test progress bars """ for pb_cls in [output.SimpleProgress, output.get_progress_bar_class()]: tot = 0 for i in pb_cls(range(4)): tot += i assert tot == 6 def test_i... | isinstance(output.in_jupyter_notebook(), bool) | 19 | 4 |
zwicker-group/py-pde | train | 161 | 4eb01ad2c93cda6a3445b66c478da8fdf482c681 | train | pde/tools/tests/test_spectral.py | train | zwicker-group/py-pde:pde/tools/tests/test_spectral.py | 77 | 12 | assert | test_noise_scaling | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import fftpack, stats
from pde import CartesianGrid, UnitGrid
from pde.tools.spectral import make_colored_noise
def spectral_density(data, dx=1.0):
"""calculate the power spectral density of a field
... | pytest.approx(0) | modified | 9b357201ce87d3ad5c25cc49cd34c1697e70f46c1aab2b6667fc8735b244ad2a | assert|test_noise_scaling|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import fftpack, stats from pde import CartesianGrid, UnitGrid from pde.tools.spectral import make_colored_noise def spectral_density(data, dx=1.0): """calculate the power spectral densit... | pytest.approx(0) | 77 | 12 |
zwicker-group/py-pde | train | 162 | 8378a3c9b2a32ff4cc5e7e4922febd6634a699f6 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 186 | 16 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | added | 768b2ec4c82dacaf1970672219ef2ada5360307074a7cfed4044a9966feb392d | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | null | null | null | |
zwicker-group/py-pde | train | 162 | 8378a3c9b2a32ff4cc5e7e4922febd6634a699f6 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 208 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | added | 6fd919b1928b1a8405f81942f8721cc0e25d9be1dc9c00b1b7ef648f25b58245 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | null | null | null | |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 206 | 4 | assert | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sin... | ["c", "b"] | modified | 2f2a9c30d35bd3d11eab973b37ff8cb71b0e99d7c66d0f37108511f8687a6e78 | assert|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields(example_gr... | ["d", "b"] | 203 | 4 |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 211 | 4 | assert | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sin... | ["a", "a"] | modified | d6bf9287b15823b754bfa2c47dcd0f174f6d5565d28f21d003b1dc8681656719 | assert|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields(example_gr... | ["a", "a"] | 210 | 4 |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/fields/tests/test_field_collections.py | train | zwicker-group/py-pde:pde/fields/tests/test_field_collections.py | 222 | 9 | pytest.raises | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
def test_shapes_nfields(example_grid):
""" test sin... | TypeError) | added | a32c7292d0337b423f3da6bbb3026f543821f18c65bc521a9079d36783bb168e | pytest.raises|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModule def test_shapes_nfields(exa... | null | null | null |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 154 | 13 | pytest.raises | test_scalar_arithmetics | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid... | TypeError) | added | 40a7b32044051e8c6dd5ee42424277cc8a31963b7a8acb1a1c1392ae58e17205 | pytest.raises|test_scalar_arithmetics|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, Cylin... | null | null | null |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 299 | 4 | assert | test_get_cartesian_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid... | grid.volume | added | abfb6b071ea030d63b89d24c02a27c40bba86b661e289be1ddeeaa27ecc84541 | assert|test_get_cartesian_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, CylindricalG... | null | null | null |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 354 | 4 | assert | test_random_colored | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid... | np.allclose(f.average, 0) | added | 9780a36b125f995582da02ae07ecdc75984f6ccc5a9339f938a4c7936efbe54d | assert|test_random_colored|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, CylindricalGrid,... | null | null | null |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 153 | 13 | pytest.raises | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | ValueError) | added | 5142ab412f717b8fd9c35749dd330aa0b2e0924f951c8634a88e1e2e0f1b3622 | pytest.raises|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc im... | null | null | null |
zwicker-group/py-pde | train | 163 | adcbe2614b83909160f992054956cb7a0745eb89 | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 211 | 8 | assert | test_storage_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | s1[1] | modified | ebb5c6abd7b27c6c6fb9881baf46ab07cfe0888b1753423dbc31dd7c270754bf | assert|test_storage_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import module_a... | 0 | 211 | 4 |
zwicker-group/py-pde | train | 164 | 840fbad55c6e39d0743447df7d316a35c1425a1b | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 220 | 4 | assert | test_inhomogeneous_bcs_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [... | isinstance(str(bc_x), str) | added | e99cadb9018d1af2431b0414a51955a99384b1547c05b59ac8ab53c299a79001 | assert|test_inhomogeneous_bcs_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _ge... | null | null | null |
zwicker-group/py-pde | train | 164 | 840fbad55c6e39d0743447df7d316a35c1425a1b | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 223 | 4 | assert | test_inhomogeneous_bcs_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [... | pytest.approx(7.0) | added | 0a62368fba9e979cb44b5f103feba4f1911bbf37422453a1621f9aad61d1391d | assert|test_inhomogeneous_bcs_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _ge... | null | null | null |
zwicker-group/py-pde | train | 164 | 840fbad55c6e39d0743447df7d316a35c1425a1b | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 259 | 4 | assert | test_inhomogeneous_bcs_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [... | pytest.approx(2.5) | added | b08e7169acbee4ece1fad59faf31a900a859fa5f0cb3b8af9b43213d52a2d6b2 | assert|test_inhomogeneous_bcs_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _ge... | null | null | null |
zwicker-group/py-pde | train | 164 | 840fbad55c6e39d0743447df7d316a35c1425a1b | train | pde/grids/boundaries/tests/test_local_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_local_boundaries.py | 274 | 4 | assert | test_inhomogeneous_bcs_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import UnitGrid
from pde.grids.boundaries.local import BCBase, _get_arr_1d
def test_get_arr_1d():
""" test the _get_arr_1d function """
# 1d
a = np.arange(3)
arr_1d, i, bc_idx = _get_arr_1d(a, [... | pytest.approx(2.5) | added | 6d0332c9bf0eb1426ace479289952023dfa01181f20a5be56cbef6ff1eb6c782 | assert|test_inhomogeneous_bcs_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import UnitGrid from pde.grids.boundaries.local import BCBase, _get_arr_1d def test_get_arr_1d(): """ test the _get_arr_1d function """ # 1d a = np.arange(3) arr_1d, i, bc_idx = _ge... | null | null | null |
zwicker-group/py-pde | train | 165 | 0de821aba47a90f5e135afbe24482cbdc06dd22f | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 185 | 12 | assert | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors():
""" test some tensor calculations """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, ... | isinstance(t, Tensor2Field) | modified | 51e1a248e4aac74194a8944839bac91321a4e80ef92893523d70fa13f06690db | assert|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors(): """ test some tensor calculations """ grid = CartesianGrid([[0.1, 0.3]... | isinstance(t, Tensor2Field) | 183 | 8 |
zwicker-group/py-pde | train | 165 | 0de821aba47a90f5e135afbe24482cbdc06dd22f | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 186 | 12 | assert | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors():
""" test some tensor calculations """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, ... | grid | modified | 64a5325668e45186b6ad0a601b4bb36302c2c5b3bcb543046beea0eee04cc894 | assert|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors(): """ test some tensor calculations """ grid = CartesianGrid([[0.1, 0.3]... | grid | 184 | 8 |
zwicker-group/py-pde | train | 165 | 0de821aba47a90f5e135afbe24482cbdc06dd22f | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 192 | 8 | assert_* | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors():
""" test some tensor calculations """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, ... | res.data) | modified | a7f1b5ac86e8db61e3912bcb0b62a0ec13407c80605bf2524ce925e069cd4749 | assert_*|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors(): """ test some tensor calculations """ grid = CartesianGrid([[0.1, 0.... | res.data) | 190 | 4 |
zwicker-group/py-pde | train | 165 | 0de821aba47a90f5e135afbe24482cbdc06dd22f | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 62 | 12 | assert | test_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | grid | modified | 235f9d50b770a0a501c5a482df3e527c0942bbe1934a2e980ae0a9f74ed54f05 | assert|test_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vectors(): """... | grid | 60 | 8 |
zwicker-group/py-pde | train | 165 | 0de821aba47a90f5e135afbe24482cbdc06dd22f | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 78 | 4 | assert | test_divergence | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | (16, 16) | modified | f0418f5c9fbcc8aec89f129c7cc4af8fb5c18f3e5110611fdea1fe211dce71eb | assert|test_divergence|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vectors(): ... | (16, 16) | 76 | 4 |
zwicker-group/py-pde | train | 165 | 0de821aba47a90f5e135afbe24482cbdc06dd22f | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 106 | 4 | assert | test_vector_gradient | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | (2, 2, 16, 16) | modified | 0ac3d951027d2d0425b621635b18e82c3685499a1c9cf618ca30678174de69f4 | assert|test_vector_gradient|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vector... | (2, 2, 16, 16) | 104 | 4 |
zwicker-group/py-pde | train | 165 | 0de821aba47a90f5e135afbe24482cbdc06dd22f | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 121 | 4 | assert_* | test_vector_laplace | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | -np.sin(y) + np.cos(x)) | modified | 8b5406498c9d626ef3a194ce8225aa046a15e80976cbd59d6f49c7cbec4b10ba | assert_*|test_vector_laplace|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vecto... | -np.sin(y) + np.cos(x)) | 119 | 4 |
zwicker-group/py-pde | train | 166 | 4722f1c18d041fd36bbef75386a81ad784471f9f | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 210 | 4 | assert | test_pde_complex | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Ca... | res2.is_complex | added | ba784367dca1b2a50ec20f882cd77653eca2db9db00ed657ce0f8bd7aab80330 | assert|test_pde_complex|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, False]) yield ... | null | null | null |
zwicker-group/py-pde | train | 166 | 4722f1c18d041fd36bbef75386a81ad784471f9f | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 224 | 4 | assert_* | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Ca... | field.data) | added | f4ba1c902eaf8325f5f5c559f1a74be5a510dc5da10a4c0f53be368ef209c428 | assert_*|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, Fa... | null | null | null |
zwicker-group/py-pde | train | 166 | 4722f1c18d041fd36bbef75386a81ad784471f9f | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 231 | 8 | assert | test_pde_setting_noise | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Ca... | eq.is_sde | added | 244e54c35e864f875e81523ed48671ec0a8331e6c58d8f195c7c67a3a344a5bb | assert|test_pde_setting_noise|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, False]) ... | null | null | null |
zwicker-group/py-pde | train | 166 | 4722f1c18d041fd36bbef75386a81ad784471f9f | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 256 | 9 | pytest.raises | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid([2, 2], periodic=[True, False])
yield grids.Ca... | Exception) | modified | 323c2a018f53e8a13277fc0fbb378ed014928a3967b1303e7bb65e2de74fc77e | pytest.raises|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids def iter_grids(): """ generate some test grids """ yield grids.UnitGrid([2, 2], periodic=[True, False]) ... | Exception) | 255 | 9 |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 251 | 4 | assert_* | test_interpolation_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid... | f.data[..., 2, 2]) | modified | 687001065503f55397eecca5f0ea0eba0d1d76c50d760007a59c024d6b339d4c | assert_*|test_interpolation_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, Cylindri... | f.data[..., 2, 2]) | 253 | 4 |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 414 | 9 | pytest.raises | test_vector_from_scalars | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import CartesianGrid, CylindricalGrid, PolarGrid, SphericalGrid... | ValueError) | modified | 07bde3097625c935ca009af4b2956829557ea0955fc7f36150c68e64e5dabd67 | pytest.raises|test_vector_from_scalars|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import CartesianGrid, Cyli... | ValueError) | 416 | 9 |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 164 | 8 | assert | test_insert_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
fro... | pytest.approx(a) | added | abb666c0efa1faae06418e45458bde67a05526048e9ec52a08322dec6693559e | assert|test_insert_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_grids import _ge... | null | null | null |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 199 | 4 | assert | test_from_expression | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
fro... | "abc" | modified | bead46fd439625d6cab54ec7552a291415a3aab55e9ea12c5c07f38275c6d500 | assert|test_from_expression|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_grids impo... | "abc" | 199 | 4 |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 241 | 8 | assert | test_projection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
fro... | example_grid_nd.dim | modified | dd78150bf69befdcf3b0b35d62ea5f919181a99d4ed7be6fee1fc5e4d085a1d2 | assert|test_projection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_grids import _g... | example_grid_nd.dim | 242 | 8 |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 108 | 4 | assert_* | test_insert_tensor | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors():
""" test some tensor calculations """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, ... | a / example_grid.cell_volumes[c]) | added | 81a76d9e4c6b3bf1870483bdd79d62930b3eb47959d9af106171a3c2f6bd71d5 | assert_*|test_insert_tensor|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors(): """ test some tensor calculations """ grid = CartesianGrid([[0.1, 0.3]... | null | null | null |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 129 | 4 | assert_* | test_tensor_invariants | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors():
""" test some tensor calculations """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, ... | f.to_scalar("invariant3").data) | modified | 903d53fbc1ca426d2ac34e39daab93d72b96ff061b725158d63c1d615d091b3d | assert_*|test_tensor_invariants|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors(): """ test some tensor calculations """ grid = CartesianGrid([[0.1, ... | f.to_scalar("invariant3").data) | 129 | 4 |
zwicker-group/py-pde | train | 167 | a7cc20d0acf7b504d8dbce6e733fac44a72a54f7 | train | pde/fields/tests/test_tensorial_fields.py | test | zwicker-group/py-pde:pde/fields/tests/test_tensorial_fields.py | 186 | 12 | assert | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors():
""" test some tensor calculations """
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, ... | grid | modified | 05952f63b3a7ffed5f4397913bab1307b62bd45c9952fcb6783adce82cc986ea | assert|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors(): """ test some tensor calculations """ grid = CartesianGrid([[0.1, 0.3]... | grid | 186 | 12 |
zwicker-group/py-pde | train | 168 | 105d40d78e7e072bc36856e22e1a1eeac895cf02 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 92 | 4 | assert | test_pde_vector_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid... | not eq.complex_valued | modified | 17aa619b4438d5db428d5ad25df68a2f82d9bef83d506aeaf4ecaa4b957e268e | assert|test_pde_vector_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """ generate some test grids """ yi... | not eq.complex_valued | 91 | 4 |
zwicker-group/py-pde | train | 168 | 105d40d78e7e072bc36856e22e1a1eeac895cf02 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 209 | 4 | assert | test_pde_complex | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid... | res1.is_complex | modified | fc601a2914e72150e021b83cecbb2a23c30383d88c9f8b78c07df595c8c99f8c | assert|test_pde_complex|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """ generate some test grids """ yield gr... | res1.is_complex | 208 | 4 |
zwicker-group/py-pde | train | 168 | 105d40d78e7e072bc36856e22e1a1eeac895cf02 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 221 | 4 | assert | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid... | not eq.explicit_time_dependence | modified | ae4c44b9202a0e34514acba532af9b85737ea033cc832eab2153a38394c323de | assert|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """ generate some test grids ""... | not eq.explicit_time_dependence | 220 | 4 |
zwicker-group/py-pde | train | 168 | 105d40d78e7e072bc36856e22e1a1eeac895cf02 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 233 | 8 | assert | test_pde_setting_noise | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid... | [0, 1] | modified | e2d48bc654cbc91050d14b5772678d532c440b9165140fd090ea540ce8f6b739 | assert|test_pde_setting_noise|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """ generate some test grids """ yi... | [0, 1] | 232 | 8 |
zwicker-group/py-pde | train | 169 | 1bf258f1f5e9a594d6a1f4769010c50772b2357b | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 80 | 8 | assert | test_storage_truncation | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | not storage.has_collection | modified | b87df910de871045777c55c12efdc1be27747cffe81253078d7ac28eff814f0a | assert|test_storage_truncation|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import mo... | not storage.has_collection | 80 | 8 |
zwicker-group/py-pde | train | 169 | 1bf258f1f5e9a594d6a1f4769010c50772b2357b | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 105 | 13 | pytest.raises | test_storing_extract_range | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | IndexError) | modified | 9b65b1b4da4b0f48215bbea50da0fd1508f12a23f8ce95402a50fd99dd1af99b | pytest.raises|test_storing_extract_range|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc... | IndexError) | 105 | 13 |
zwicker-group/py-pde | train | 169 | 1bf258f1f5e9a594d6a1f4769010c50772b2357b | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 143 | 8 | assert | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | storage.has_collection | modified | 0cdd95f3254b9b7feda3bea52d4adda031e05c521ceb53d5c707d6fc561d4835 | assert|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import mo... | storage.has_collection | 143 | 8 |
zwicker-group/py-pde | train | 169 | 1bf258f1f5e9a594d6a1f4769010c50772b2357b | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 209 | 8 | assert_* | test_storage_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_available
def test_st... | s1.times) | modified | 950788145b4780096a35fb914c6cea3b5afc163c4e0ac19af54ee1134e3de22b | assert_*|test_storage_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.misc import module... | s1.times) | 209 | 8 |
zwicker-group/py-pde | train | 170 | 72f86c05bb22093769fabc8aa95b7e3ac02f9555 | train | pde/pdes/tests/test_diffusion_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion_pdes.py | 83 | 4 | assert_* | test_diffusion_cached | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert isinstance(str(eq), str)
assert isinst... | c2a.data) | added | 2b1207a8e105e6e7db8b8567823e621cc3e4a4eeed34acc5363e0fb98dd8c6ac | assert_*|test_diffusion_cached|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = DiffusionPDE() assert isinstance(str(eq), str) as... | null | null | null |
zwicker-group/py-pde | train | 170 | 72f86c05bb22093769fabc8aa95b7e3ac02f9555 | train | pde/pdes/tests/test_diffusion_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion_pdes.py | 84 | 4 | assert | test_diffusion_cached | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert isinstance(str(eq), str)
assert isinst... | not np.allclose(c1b.data, c2b.data) | added | fe2ff0770b06c1d81b77b895135a8475e52ea899e948b9a745bddee353098ac7 | assert|test_diffusion_cached|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = DiffusionPDE() assert isinstance(str(eq), str) asse... | null | null | null |
zwicker-group/py-pde | train | 170 | 72f86c05bb22093769fabc8aa95b7e3ac02f9555 | train | pde/pdes/tests/test_diffusion_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion_pdes.py | 85 | 4 | assert_* | test_diffusion_cached | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid
def test_diffusion_single():
""" test some methods of the simple diffusion model """
eq = DiffusionPDE()
assert isinstance(str(eq), str)
assert isinst... | c2c.data) | added | 22a16265a7e44a73ec6ad977978d77dd17a9a8f43e953d3bcdd254096b0ef48a | assert_*|test_diffusion_cached|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import CartesianGrid, DiffusionPDE, ScalarField, UnitGrid def test_diffusion_single(): """ test some methods of the simple diffusion model """ eq = DiffusionPDE() assert isinstance(str(eq), str) as... | null | null | null |
zwicker-group/py-pde | train | 171 | 3f5287977ddc7c305414de7f1fbdc3fa6bdb4b8e | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 104 | 8 | assert_* | test_trackers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
from unittest import mock
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc impo... | state.integral) | modified | 393b8097770ffe5bd2036084410b57ef3a880df34e6745466ce3b22a6b0ef11f | assert_*|test_trackers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle from unittest import mock import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from... | state.integral) | 103 | 8 |
zwicker-group/py-pde | train | 171 | 3f5287977ddc7c305414de7f1fbdc3fa6bdb4b8e | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 125 | 4 | assert_* | test_callback_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
from unittest import mock
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc impo... | data_tracker.data) | modified | fa406323592f1c46449d6489b67641d8f7e10d43e5f87a5225522e9424943840 | assert_*|test_callback_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle from unittest import mock import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, Diffusion... | data_tracker.data) | 124 | 4 |
zwicker-group/py-pde | train | 171 | 3f5287977ddc7c305414de7f1fbdc3fa6bdb4b8e | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 159 | 4 | assert_* | test_data_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
from unittest import mock
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc impo... | np.arange(11)) | modified | 976b9e9bcc290b4a636376bb95f1ac6f1a1d9645e0866668b58c31264bf25cc6 | assert_*|test_data_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle from unittest import mock import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE ... | np.arange(11)) | 158 | 4 |
zwicker-group/py-pde | train | 171 | 3f5287977ddc7c305414de7f1fbdc3fa6bdb4b8e | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 204 | 4 | assert | test_consistency_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
from unittest import mock
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc impo... | con.info["t_end"] | modified | 90ebc1410b509449e304a6686230702b8c8e112c798f35c4a599e2a1f92b67a7 | assert|test_consistency_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle from unittest import mock import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, Diffusio... | con.info["t_end"] | 203 | 4 |
zwicker-group/py-pde | train | 172 | 2718ceffec7a7067bef351487233a57376647a92 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 238 | 4 | assert | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | v1.is_complex and v2.is_complex | added | d6cce07bc94b255558b6641d6c74ed96514581b0fc56c37188b50530e2e01919 | assert|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vector... | null | null | null |
zwicker-group/py-pde | train | 172 | 2718ceffec7a7067bef351487233a57376647a92 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 245 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | expected) | added | d3103555d7aff23bd5c574d6d4cb4564aab95a55e62affafca01c6dd72d8898c | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | null | null | null |
zwicker-group/py-pde | train | 172 | 2718ceffec7a7067bef351487233a57376647a92 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 251 | 12 | assert | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | isinstance(s, ScalarField) | added | a8771ae919f2ecb0aa2178ee0286c741490040a4ed1f54cafe1147ba1b02eb25 | assert|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vector... | null | null | null |
zwicker-group/py-pde | train | 172 | 2718ceffec7a7067bef351487233a57376647a92 | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 252 | 12 | assert | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
""" test some v... | grid | added | 8432014400bc6e0bbbccf524ca38e53b911dd7418b20371dd19c505b38b85b38 | assert|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vector... | null | null | null |
zwicker-group/py-pde | train | 173 | e151de19390188804cb5473653fbcfcb4b205803 | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 425 | 12 | assert | test_normalize_point | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
""" retu... | pytest.approx(y) | added | d6dddb3d890cf3912f44abf09fdb34fb0df67ead7b0272edac241808530e6b05 | assert|test_normalize_point|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2, perio... | null | null | null |
zwicker-group/py-pde | train | 173 | e151de19390188804cb5473653fbcfcb4b205803 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 53 | 8 | assert | test_serialization | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():
""" generator providing ... | g._cache_hash() | modified | 56d52674832a9a7e7cac2679a6152b4af30afaaf188d1356116b859e2af98bfb | assert|test_serialization|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnlessModule def iter_grids(): """ gen... | g._cache_hash() | 54 | 8 |
zwicker-group/py-pde | train | 173 | e151de19390188804cb5473653fbcfcb4b205803 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 71 | 8 | assert | test_iter_mirror_points | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():
""" generator providing ... | num_expect | modified | 454cac03acf6dbb8914a08d17131c752499e1a9f88f827c417a88205cc5b4624 | assert|test_iter_mirror_points|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnlessModule def iter_grids(): ""... | num_expect | 72 | 8 |
zwicker-group/py-pde | train | 173 | e151de19390188804cb5473653fbcfcb4b205803 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 102 | 8 | assert | test_integration | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():
""" generator providing ... | pytest.approx(grid.integrate(arr)) | modified | fb2b9bcb69d24569e66c68ac654374e76c9ec337f3f05ec30e2aa18c232c3c93 | assert|test_integration|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnlessModule def iter_grids(): """ gener... | pytest.approx(grid.integrate(arr)) | 103 | 8 |
zwicker-group/py-pde | train | 173 | e151de19390188804cb5473653fbcfcb4b205803 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 115 | 9 | pytest.raises | test_grid_plotting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():
""" generator providing ... | NotImplementedError) | modified | f22ac05896ccc7f688ebc438e964c22d9d6346527aa66510e38acf219bd09435 | pytest.raises|test_grid_plotting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnlessModule def iter_grids(): ... | NotImplementedError) | 116 | 9 |
zwicker-group/py-pde | train | 174 | 5682aa5341ea27ea32dafe45c633e29fb2755e7f | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 40 | 12 | assert_* | test_storage_write | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | np.arange(dim)) | modified | d9a7a50d9c92d1245000702f4d2b319d00a759df27f4e817bfec0c5270d24d5c | assert_*|test_storage_write|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.m... | np.arange(dim)) | 39 | 12 |
zwicker-group/py-pde | train | 174 | 5682aa5341ea27ea32dafe45c633e29fb2755e7f | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 86 | 8 | assert | test_storage_truncation | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | not storage.has_collection | added | 06d9587da53db5dad623af95990a49f6fe918521d06d0491a02644bd44fcad6b | assert|test_storage_truncation|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tool... | null | null | null |
zwicker-group/py-pde | train | 174 | 5682aa5341ea27ea32dafe45c633e29fb2755e7f | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 149 | 8 | assert | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | storage.has_collection | modified | b46cfa68ab65136314ece1cb57c4ab51b43f6e84e82509fee8ff19af9e64465d | assert|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tool... | f3 | 146 | 8 |
zwicker-group/py-pde | train | 174 | 5682aa5341ea27ea32dafe45c633e29fb2755e7f | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 186 | 8 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools.misc import module_availab... | ScalarField(grid, [2, 3]) | modified | 3e124f374d2faed8ca33855eda49914ab2b0ba89c6d90d5d8889bc72161c6ec8 | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools.mis... | 0 | 185 | 4 |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | pde/fields/tests/test_generic_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_generic_fields.py | 74 | 4 | assert_* | test_shapes_nfields | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGrid,
PolarSy... | field_c.data) | added | 8240b69c6dc1d958d0adfd0cd4ce34db0a561befc8303e8c1ad32d300404bb3c | assert_*|test_shapes_nfields|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import FieldBase from pde.grids import ( CartesianGrid, CylindricalS... | null | null | null |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 398 | 24 | pytest.approx | test_complex_dtype | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids.tests.test_cartesian_grids import _get_cartesian_grid
... | 1 + 1j) | modified | 02c22bc7d55ea5bdc8b6e16b7088945756d35c928b1c0078b215a5e72a3b4f13 | pytest.approx|test_complex_dtype|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries from pde.grids.tests.test_cartesian_gr... | 1 + 1j) | 398 | 24 |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | pde/grids/operators/tests/test_polar_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_polar_operators.py | 65 | 4 | assert | test_small_annulus | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField
from pde.grids.operators import polar_sym as ops
def test_findiff():
""" test operator for a simple polar grid """
grid = Polar... | 1e-3 | added | 3736614e21832b57cd3d2459eefcdec5a4180297f839bb9df94372266d3700a1 | assert|test_small_annulus|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField from pde.grids.operators import polar_sym as ops def test_findiff(): """ test operator for a simple polar grid ""... | null | null | null |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 69 | 4 | assert_* | test_small_annulus | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField
from pde.grids.operators import spherical_sym as ops
def test_findiff_sph():
""" test operator for a simple spherical grid """
... | res[1]) | modified | d5456de2bdb82cc93625fb8f2bbb7d49812712e44fe4557962772bd810f0a861 | assert_*|test_small_annulus|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField from pde.grids.operators import spherical_sym as ops def test_findiff_sph(): """ test operator for a simple... | res[1]) | 69 | 4 |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | pde/grids/tests/test_cylindrical_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cylindrical_grids.py | 26 | 8 | assert | test_cylindrical_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalSymGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
def test_cylindrical_grid():
""" test simple cylindrical grid """
for periodic in [True, False]:
... | pytest.approx(np.pi * 4 ** 2 * 3) | modified | 071bced6719483c42fde34e39c941fe8b99dbb372772eba50c2c8611331a562a | assert|test_cylindrical_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalSymGrid, ScalarField from pde.grids.boundaries.local import NeumannBC def test_cylindrical_grid(): """ test simple cylindrical grid """ for periodic in ... | pytest.approx(np.pi * 4 ** 2 * 3) | 26 | 8 |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 115 | 9 | pytest.raises | test_grid_plotting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():
""" generator providing ... | NotImplementedError) | modified | f44d9e8b097cff2690c862ef8f1a405045add0e8a688bd9adf93a10d9ab88ed3 | pytest.raises|test_grid_plotting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnlessModule def iter_grids(): ... | NotImplementedError) | 115 | 9 |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 289 | 13 | pytest.raises | test_pde_bcs_error | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids
from pde.grids.boundaries.local import BCDataError
def iter_grids():
""" generate some test grids """
yield grids.UnitGrid... | BCDataError) | modified | 89f44d08e2893012dd268d12a21e1ae7f595e80243ee037bf5b92541bc47fa46 | pytest.raises|test_pde_bcs_error|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, FieldCollection, ScalarField, SwiftHohenbergPDE, VectorField, grids from pde.grids.boundaries.local import BCDataError def iter_grids(): """ generate some test grids """... | BCDataError) | 289 | 13 |
zwicker-group/py-pde | train | 175 | b952ed21b1e3490c995f7618f3fa57b8f7b95326 | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 186 | 16 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.append(str(PACKAGE_PATH))
import num... | result) | modified | 73d6c87fd94ed052ea7447291e57615e8223d22f0c566585ac020e265f0001a4 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.append(str(PACKAGE_PATH)) imp... | result) | 186 | 16 | |
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/fields/tests/test_vectorial_fields.py | train | zwicker-group/py-pde:pde/fields/tests/test_vectorial_fields.py | 204 | 8 | assert_* | test_boundary_interpolation_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors():
"""test some ve... | bndry_val) | modified | ff187a9daff6bb91bac20fbc7012c1a71eb18e4ca3ee965954190ed074c5ce08 | assert_*|test_boundary_interpolation_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule... | bndry_val) | 204 | 8 |
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/grids/tests/test_cartesian_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_cartesian_grids.py | 403 | 4 | assert | test_interpolate_3d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError
def _get_cartesian_grid(dim=2, periodic=True):
"""retur... | pytest.approx(1) | modified | a6acad6b7d21cae44f71bd48dd208c080bae1fc1239434fc78f53a1468def1b2 | assert|test_interpolate_3d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, DomainError, PeriodicityError def _get_cartesian_grid(dim=2, period... | pytest.approx(1) | 403 | 4 |
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/grids/tests/test_generic_grids.py | train | zwicker-group/py-pde:pde/grids/tests/test_generic_grids.py | 115 | 9 | pytest.raises | test_grid_plotting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval
from pde.tools.misc import skipUnlessModule
def iter_grids():
"""generator providing s... | NotImplementedError) | modified | 12279d5edcdba4a65e8335df465d9a1969a49fa1501d375e199d75c4fcbcbd3c | pytest.raises|test_grid_plotting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval from pde.tools.misc import skipUnlessModule def iter_grids(): ... | NotImplementedError) | 115 | 9 |
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/pdes/tests/test_laplace_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_laplace_pdes.py | 31 | 4 | assert_* | test_pde_poisson_solver_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, UnitGrid
from pde.pdes import solve_laplace_equation, solve_poisson_equation
def test_pde_poisson_solver_1d():
"""test the poisson solver on 1d grids"""
# solve Laplac... | 1 + 0.5 * xs ** 2) | modified | e2b5346433472ceb93679cb6070115c14cb1212df21ab3f02456103e8fc85262 | assert_*|test_pde_poisson_solver_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, UnitGrid from pde.pdes import solve_laplace_equation, solve_poisson_equation def test_pde_poisson_solver_1d(): """test the poisson solver on 1d... | 1 + 0.5 * xs ** 2) | 31 | 4 |
zwicker-group/py-pde | train | 176 | 200baf4c90d33051ddfadd2964c038e9f26eff5e | train | pde/pdes/tests/test_wave_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_wave_pdes.py | 24 | 4 | assert_* | test_wave_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, ScalarField, UnitGrid, WavePDE
@pytest.mark.parametrize("dim", [1, 2])
def test_wave_consistency(dim):
"""test some methods of the wave model"""
eq = WavePDE()
assert isinstance(str(eq),... | rhs(state.data, 0)) | modified | 2a8fa3e636e431cde0a049822820374c98cfa518282d0ce239d9b5a33d38df93 | assert_*|test_wave_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, ScalarField, UnitGrid, WavePDE @pytest.mark.parametrize("dim", [1, 2]) def test_wave_consistency(dim): """test some methods of the wave model""" eq = WavePDE() assert isin... | rhs(state.data, 0)) | 24 | 4 |
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