repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 256 | 3a827d861692cbc7727ff098c81aa0ee49a5a5b6 | train | pde/grids/tests/test_grid_mesh.py | train | zwicker-group/py-pde:pde/grids/tests/test_grid_mesh.py | 259 | 4 | assert_* | test_integration_parallel | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import DiffusionPDE, FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid, UnitGrid
from pde.grids._mesh import GridMesh
from pde.tools ... | expected) | added | 3ccdf648ec35d9b307573383ae6925f9ea849eb5dd22b6467e9aa8214452258d | assert_*|test_integration_parallel|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import DiffusionPDE, FieldCollection, ScalarField, Tensor2Field, VectorField from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid, UnitGrid from pde.grids._mes... | null | null | null |
zwicker-group/py-pde | train | 256 | 3a827d861692cbc7727ff098c81aa0ee49a5a5b6 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 161 | 4 | assert_* | test_compare_swift_hohenberg | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools import mpi
def iter_grids()... | res2.data) | added | 8b8a28d35464969bf985ad32c99c413f59e074e0fb95a69c49df80fd8c1d414f | assert_*|test_compare_swift_hohenberg|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError from pde... | null | null | null |
zwicker-group/py-pde | train | 256 | 3a827d861692cbc7727ff098c81aa0ee49a5a5b6 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 299 | 4 | assert | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools import mpi
def iter_grids()... | not eq.complex_valued | added | 6fdebbed7ec9dab57dc74af5de8e37ca561876f1d863b8afbb4c60e3a1e0e278 | assert|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError from pde.too... | null | null | null |
zwicker-group/py-pde | train | 256 | 3a827d861692cbc7727ff098c81aa0ee49a5a5b6 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 393 | 4 | assert_* | test_pde_integral | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools import mpi
def iter_grids()... | -field.integral) | added | 30c0f0da47f4b840f7f4dbd111cf2cce144f602f700c177e2e491d1051583648 | assert_*|test_pde_integral|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError from pde.tools impo... | null | null | null |
zwicker-group/py-pde | train | 256 | 3a827d861692cbc7727ff098c81aa0ee49a5a5b6 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 412 | 32 | pytest.approx | test_anti_periodic_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools import mpi
def iter_grids()... | 0, abs=1e-5) | added | a07481f0504fe09a6592f18464312830ce7856f085aa9abaf66ab6551f1191a9 | pytest.approx|test_anti_periodic_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError from pde.... | null | null | null |
zwicker-group/py-pde | train | 257 | 4c2bd9f56f2450289aa462d72ff18586a9bc1f9a | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 50 | 4 | assert_* | test_storage_write | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | np.arange(2)) | added | 36972b28aeca4517924198684698abd8491f999db47b404a043f28eda342b9b0 | assert_*|test_storage_write|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools i... | null | null | null |
zwicker-group/py-pde | train | 257 | 4c2bd9f56f2450289aa462d72ff18586a9bc1f9a | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 99 | 8 | assert | test_storage_truncation | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | not storage.has_collection | added | 1267ab855035e5d0b4c60d8b59089de89ba9d4ed32785e2d9ef3f853f85ef5dd | assert|test_storage_truncation|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tool... | null | null | null |
zwicker-group/py-pde | train | 257 | 4c2bd9f56f2450289aa462d72ff18586a9bc1f9a | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 159 | 4 | assert | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | "new label" | added | d763c5fdba55ade6d8ba5623a868f8dbe2f0f3cba42063f34d0a8b09e2219bdb | assert|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tool... | null | null | null |
zwicker-group/py-pde | train | 257 | 4c2bd9f56f2450289aa462d72ff18586a9bc1f9a | train | pde/storage/tests/test_generic_storages.py | train | zwicker-group/py-pde:pde/storage/tests/test_generic_storages.py | 188 | 4 | assert | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | ScalarField(grid, [2, 3]) | added | 5019f6f0bcfa4d8b4f8f95813b4117f2bbf6371c89104b37d0c46ca4eb744c31 | assert|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools imp... | null | null | null |
zwicker-group/py-pde | train | 258 | ef3873f73b8bb01bb38bcec6fa220010d462308d | train | pde/tools/tests/test_math.py | train | zwicker-group/py-pde:pde/tools/tests/test_math.py | 26 | 4 | assert_* | test_SmoothData1D | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.math import OnlineStatistics, SmoothData1D
def test_SmoothData1D():
"""test smoothing"""
rng = np.random.default_rng(1)
x = rng.uniform(0, 1, 128)
xs = np.linspace(0, 1, 16)[1:-1]
s =... | np.sin(xs)) | added | ad7c46a54a5ee969643cc40cf71c3aa1312bfc9b4927b43bc87668b6f39c7d7a | assert_*|test_SmoothData1D|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.math import OnlineStatistics, SmoothData1D def test_SmoothData1D(): """test smoothing""" rng = np.random.default_rng(1) x = rng.uniform(0, 1, 128) xs = np.linspace(0, 1, 16)[1:-1] s... | null | null | null |
zwicker-group/py-pde | train | 258 | ef3873f73b8bb01bb38bcec6fa220010d462308d | train | pde/tools/tests/test_math.py | train | zwicker-group/py-pde:pde/tools/tests/test_math.py | 27 | 4 | assert_* | test_SmoothData1D | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.math import OnlineStatistics, SmoothData1D
def test_SmoothData1D():
"""test smoothing"""
rng = np.random.default_rng(1)
x = rng.uniform(0, 1, 128)
xs = np.linspace(0, 1, 16)[1:-1]
s =... | np.cos(xs)) | added | 017bea2aef293562032dc571d218584498f2cc29a76a0e739b16902c69978eb3 | assert_*|test_SmoothData1D|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.math import OnlineStatistics, SmoothData1D def test_SmoothData1D(): """test smoothing""" rng = np.random.default_rng(1) x = rng.uniform(0, 1, 128) xs = np.linspace(0, 1, 16)[1:-1] s... | null | null | null |
zwicker-group/py-pde | train | 258 | ef3873f73b8bb01bb38bcec6fa220010d462308d | train | pde/tools/tests/test_math.py | train | zwicker-group/py-pde:pde/tools/tests/test_math.py | 48 | 4 | assert | test_online_statistics | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.math import OnlineStatistics, SmoothData1D
def test_SmoothData1D():
"""test smoothing"""
rng = np.random.default_rng(1)
x = rng.uniform(0, 1, 128)
xs = np.linspace(0, 1, 16)[1:-1]
s =... | pytest.approx(1.5) | added | 9b0dae015ab573928fccfb6a8c304b720b6a39864b4be9b6430e1fe4a304ab63 | assert|test_online_statistics|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.math import OnlineStatistics, SmoothData1D def test_SmoothData1D(): """test smoothing""" rng = np.random.default_rng(1) x = rng.uniform(0, 1, 128) xs = np.linspace(0, 1, 16)[1:-1... | null | null | null |
zwicker-group/py-pde | train | 258 | ef3873f73b8bb01bb38bcec6fa220010d462308d | train | pde/tools/tests/test_math.py | train | zwicker-group/py-pde:pde/tools/tests/test_math.py | 49 | 4 | assert | test_online_statistics | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.math import OnlineStatistics, SmoothData1D
def test_SmoothData1D():
"""test smoothing"""
rng = np.random.default_rng(1)
x = rng.uniform(0, 1, 128)
xs = np.linspace(0, 1, 16)[1:-1]
s =... | pytest.approx(0.5) | added | 6fd08dde7f78e53ef596cbbcc9ed55335a3b5a02c2b41cd515c929a2ff848c37 | assert|test_online_statistics|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.math import OnlineStatistics, SmoothData1D def test_SmoothData1D(): """test smoothing""" rng = np.random.default_rng(1) x = rng.uniform(0, 1, 128) xs = np.linspace(0, 1, 16)[1:-1... | null | null | null |
zwicker-group/py-pde | train | 259 | d551e293447c55f834978767d13f2b25333c2af8 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 222 | 4 | assert_* | test_examples_tensor_sph | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | expected.data) | added | 43bde5d4a3d9bad61630833e4fb43394ed299a551405b51e852b568bfdd8013f | assert_*|test_examples_tensor_sph|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical grid""" ... | null | null | null |
zwicker-group/py-pde | train | 259 | d551e293447c55f834978767d13f2b25333c2af8 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 237 | 4 | assert_* | test_tensor_sph_symmetry | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | expect) | added | 97ba0307aaedeafe2d8673124e20d7568a95012e777b1fda9ec66755e64fcefc | assert_*|test_tensor_sph_symmetry|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical grid""" ... | null | null | null |
zwicker-group/py-pde | train | 259 | d551e293447c55f834978767d13f2b25333c2af8 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 253 | 4 | assert_* | test_tensor_div_div_analytical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | expect.data[1:-1]) | added | 34901072beb12979c1771d71833c1b90a346565cd9a1cf94ebe9b797470b49e8 | assert_*|test_tensor_div_div_analytical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical gr... | null | null | null |
zwicker-group/py-pde | train | 259 | d551e293447c55f834978767d13f2b25333c2af8 | train | pde/grids/operators/tests/test_spherical_operators.py | train | zwicker-group/py-pde:pde/grids/operators/tests/test_spherical_operators.py | 269 | 4 | assert_* | test_tensor_div_div | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | est.data[2:-2]) | added | 5b328ef76eefe3b73e637f4a7647b997e3e39f2161813565416d124f0068db41 | assert_*|test_tensor_div_div|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical grid""" grid ... | null | null | null |
zwicker-group/py-pde | train | 260 | e558ad39753d1fd8cf7d9874198a2b817f8e1bb1 | train | pde/tools/tests/test_numba.py | train | zwicker-group/py-pde:pde/tools/tests/test_numba.py | 12 | 4 | assert | test_environment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde.tools.numba import Counter, flat_idx, numba_environment
def test_environment():
"""test function signature checks"""
assert | isinstance(numba_environment(), dict) | added | a2322add2bd96009eaeb8b0b412972019bdfe3799c4a430de98a4e62a82aa598 | assert|test_environment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde.tools.numba import Counter, flat_idx, numba_environment def test_environment(): """test function signature checks""" assert | null | null | null |
zwicker-group/py-pde | train | 261 | 7e206a166a573240430c1627bfd918b892d4896a | train | pde/grids/boundaries/tests/test_axes_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes_boundaries.py | 106 | 12 | assert | test_natural_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.base import PeriodicityError
from pde.grids.boundaries.axes import BCDataError, Boundaries
from pde.grids.boundaries.axis import BoundaryPair, Boundar... | BoundaryPair.from_data(g, 1, "value") | modified | 9cca935601213a4d5fbe35ed7ceaf7008c3789f53ab26cdcc1f8b3113429078e | assert|test_natural_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.grids.base import PeriodicityError from pde.grids.boundaries.axes import BCDataError, Boundaries from pde.grids.boundar... | BoundaryPair.from_data(g, 1, "value") | 107 | 12 |
zwicker-group/py-pde | train | 261 | 7e206a166a573240430c1627bfd918b892d4896a | train | pde/grids/boundaries/tests/test_axes_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes_boundaries.py | 123 | 4 | assert | test_bc_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.base import PeriodicityError
from pde.grids.boundaries.axes import BCDataError, Boundaries
from pde.grids.boundaries.axis import BoundaryPair, Boundar... | bc[0].low.value == 2 and bc[0].high.value == 3 | modified | 0d111d99ea5eb17fd20766970e15c1bad34d79f353061324303248f78320df5a | assert|test_bc_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.grids.base import PeriodicityError from pde.grids.boundaries.axes import BCDataError, Boundaries from pde.grids.boundaries.axis import Bo... | bc[0].low.value == 2 and bc[0].high.value == 3 | 124 | 4 |
zwicker-group/py-pde | train | 261 | 7e206a166a573240430c1627bfd918b892d4896a | train | pde/grids/boundaries/tests/test_axes_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes_boundaries.py | 145 | 8 | assert_* | test_set_ghost_cells | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.base import PeriodicityError
from pde.grids.boundaries.axes import BCDataError, Boundaries
from pde.grids.boundaries.axis import BoundaryPair, Boundar... | arr2[tuple(idx)]) | modified | cf04b82e10fdb9936e3f737327a59b6722712ee0296af8e805dc0ab5bd634eed | assert_*|test_set_ghost_cells|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.grids.base import PeriodicityError from pde.grids.boundaries.axes import BCDataError, Boundaries from pde.grids.boundaries.axis i... | arr2[tuple(idx)]) | 146 | 8 |
zwicker-group/py-pde | train | 261 | 7e206a166a573240430c1627bfd918b892d4896a | train | pde/grids/boundaries/tests/test_axes_boundaries.py | train | zwicker-group/py-pde:pde/grids/boundaries/tests/test_axes_boundaries.py | 163 | 9 | pytest.raises | test_setting_specific_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.base import PeriodicityError
from pde.grids.boundaries.axes import BCDataError, Boundaries
from pde.grids.boundaries.axis import BoundaryPair, Boundar... | PeriodicityError) | modified | 668aefddc549ce3ad15276507a28a5aa6cbe70aad680b15c719e17bca182d84d | pytest.raises|test_setting_specific_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import numpy as np import pytest from pde import ScalarField, UnitGrid from pde.grids.base import PeriodicityError from pde.grids.boundaries.axes import BCDataError, Boundaries from pde.grids.boundar... | PeriodicityError) | 164 | 9 |
zwicker-group/py-pde | train | 261 | 7e206a166a573240430c1627bfd918b892d4896a | train | pde/tools/tests/test_numba.py | train | zwicker-group/py-pde:pde/tools/tests/test_numba.py | 12 | 4 | assert | test_environment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde.tools.numba import Counter, flat_idx, jit, numba_environment
def test_environment():
"""test function signature checks"""
assert | isinstance(numba_environment(), dict) | modified | 9cfbd075ccb71efe833ae93e7a7995ece9d48b373a395d0743110d46aa030105 | assert|test_environment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde.tools.numba import Counter, flat_idx, jit, numba_environment def test_environment(): """test function signature checks""" assert | isinstance(numba_environment(), dict) | 12 | 4 |
zwicker-group/py-pde | train | 262 | 8c794680f6f05985b65382a1b69b202ce216445b | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 108 | 4 | assert | test_laplacian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.fields.tests.fixtures import iter_grids
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.... | (16, 16) | modified | 0fac24d9fe0fb867053f25b2a3f206000a6cb3caf586bbb103a992f00ee538e3 | assert|test_laplacian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.fields.tests.fixtures import iter_grids from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, b... | (16, 16) | 106 | 4 |
zwicker-group/py-pde | train | 262 | 8c794680f6f05985b65382a1b69b202ce216445b | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 147 | 4 | assert_* | test_interpolation_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.fields.tests.fixtures import iter_grids
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.... | np.array([42.0, 0.5, 1.5, 2.5, 3.5, 42.0])) | modified | 6fde4cacb8cd4fcee3f5c1296a8529dd27a026f866c268a5b091a7398388dfb0 | assert_*|test_interpolation_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.fields.tests.fixtures import iter_grids from pde.grids import CartesianGrid, PolarSymGrid, U... | np.array([42.0, 0.5, 1.5, 2.5, 3.5, 42.0])) | 145 | 4 |
zwicker-group/py-pde | train | 262 | 8c794680f6f05985b65382a1b69b202ce216445b | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 260 | 4 | assert_* | test_to_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.fields.tests.fixtures import iter_grids
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.... | np.angle(sf.data)) | modified | 07dd1d8d9446953b4976655f9b14cadd8ada18d92f667c3fc57bbfb104f0e5a5 | assert_*|test_to_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.fields.tests.fixtures import iter_grids from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid,... | np.angle(sf.data)) | 258 | 4 |
zwicker-group/py-pde | train | 262 | 8c794680f6f05985b65382a1b69b202ce216445b | train | pde/fields/tests/test_scalar_fields.py | val | zwicker-group/py-pde:pde/fields/tests/test_scalar_fields.py | 522 | 4 | assert_* | test_boundary_expressions_with_t | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.fields.tests.fixtures import iter_grids
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.... | [2, 0, 2]) | modified | e6699de77e2d63c5428492fee0d398b620865328f40cf216134e72328d41afb4 | assert_*|test_boundary_expressions_with_t|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.fields.tests.fixtures import iter_grids from pde.grids import CartesianGrid, Polar... | [2, 0, 2]) | 520 | 4 |
zwicker-group/py-pde | train | 262 | 8c794680f6f05985b65382a1b69b202ce216445b | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 439 | 8 | assert_* | test_pde_const_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools import mpi
def iter_grids()... | res_b.data) | added | f37d8f40dd05d7858fbd97e23331770f1748ab4fb8218062d354259972fae4d7 | assert_*|test_pde_const_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError from pde.tools imp... | null | null | null |
zwicker-group/py-pde | train | 263 | fe66ba4f0b01fa8d0970c266254e8492f13773ba | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 185 | 20 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import ... | expected.data) | modified | d4b97550e859bcf557445737dac2fafd9c26d278791211f003578aaf372712b0 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) ... | expected.data) | 182 | 20 | |
zwicker-group/py-pde | train | 263 | fe66ba4f0b01fa8d0970c266254e8492f13773ba | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 188 | 20 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import ... | expected.data) | added | 25a1c657980e4f1b2d5de3520e1db6ced2694ccc688b1c32b2948687176ccf95 | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) ... | null | null | null | |
zwicker-group/py-pde | train | 263 | fe66ba4f0b01fa8d0970c266254e8492f13773ba | train | tests/performance_laplace.py | train | zwicker-group/py-pde:tests/performance_laplace.py | 209 | 12 | assert_* | #!/usr/bin/env python3
"""
This script tests the performance of the implementation of the laplace operator as a
primary example for the differential operators supplied by `py-pde`.
"""
import sys
from pathlib import Path
PACKAGE_PATH = Path(__file__).resolve().parents[1]
sys.path.insert(0, str(PACKAGE_PATH))
import ... | expected.data) | added | 052b91365f0d370837202286eef0a88a4551a635c42041d3fc6d34f9bfc42f8d | assert_*||#!/usr/bin/env python3 """ This script tests the performance of the implementation of the laplace operator as a primary example for the differential operators supplied by `py-pde`. """ import sys from pathlib import Path PACKAGE_PATH = Path(__file__).resolve().parents[1] sys.path.insert(0, str(PACKAGE_PATH)) ... | null | null | null | |
zwicker-group/py-pde | train | 264 | fd3c31ad2131a92826958882002ad4534f974664 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 207 | 4 | assert | test_consistency_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | con.info["t_end"] | added | 307c2ba36b758bde27edaa2069a497fea4776e3f63ed4a5e852d6448ba5a3f8b | assert|test_consistency_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc i... | null | null | null |
zwicker-group/py-pde | train | 264 | fd3c31ad2131a92826958882002ad4534f974664 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 228 | 8 | assert | test_get_named_trackers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | isinstance(name, str) | added | f125bcb1d923511b8342add5def3e8969a7809d0e4fe2f2bc6df8ead60be4591 | assert|test_get_named_trackers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc im... | null | null | null |
zwicker-group/py-pde | train | 264 | fd3c31ad2131a92826958882002ad4534f974664 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 230 | 8 | assert | test_get_named_trackers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | isinstance(tracker, cls) | added | 8bc9abd4ac51f715ca7ed23c58d95d6e222e9113aeaec79fa709b7eeb1638a17 | assert|test_get_named_trackers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc im... | null | null | null |
zwicker-group/py-pde | train | 264 | fd3c31ad2131a92826958882002ad4534f974664 | train | pde/trackers/tests/test_trackers.py | test | zwicker-group/py-pde:pde/trackers/tests/test_trackers.py | 244 | 4 | assert_* | test_double_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | np.arange(5)) | added | 0c292e85d79993ab5c144e853e4139ee45f7321202490dff01d403b400d4ed5d | assert_*|test_double_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc impo... | null | null | null |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/pdes/tests/test_diffusion_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion_pdes.py | 58 | 4 | assert_* | test_simple_diffusion_flux_left | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single():
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()
... | 2 - 2 * grid.axes_coords[0]) | modified | 71ed2fbb429a76fd346873492240718e971c8c30cba4a59297cbe7eb6a0be515 | assert_*|test_simple_diffusion_flux_left|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid def test_diffusion_single(): """test some methods of the simple diffusion mo... | 2 - 2 * grid.axes_coords[0]) | 57 | 4 |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/pdes/tests/test_diffusion_pdes.py | train | zwicker-group/py-pde:pde/pdes/tests/test_diffusion_pdes.py | 115 | 4 | assert | test_diffusion_sde | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single():
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()
... | 0.01 | added | bc1157e765c78d75d9f84960c7bf7f272e5860f72f3909863f0425fd92c9eb39 | assert|test_diffusion_sde|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid def test_diffusion_single(): """test some methods of the simple diffusion model""" eq = Dif... | null | null | null |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 104 | 8 | assert_* | test_pde_vector_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | res_b.data) | modified | 142166efece1f3ddd575353cb825394595e6689ff1d814c7ca6dd87ec8ea21d9 | assert_*|test_pde_vector_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDat... | res_b.data) | 103 | 8 |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/pdes/tests/test_pde_class.py | train | zwicker-group/py-pde:pde/pdes/tests/test_pde_class.py | 253 | 4 | assert | test_pde_complex_serial | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | not eq.explicit_time_dependence | modified | 870d07e83f4d46206e0c71e450d74abb84bf2d5210d3289447f6b5db55d47019 | assert|test_pde_complex_serial|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCD... | res1.is_complex | 253 | 4 |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/solvers/tests/test_explicit_mpi_solvers.py | val | zwicker-group/py-pde:pde/solvers/tests/test_explicit_mpi_solvers.py | 72 | 8 | assert_* | test_stochastic_mpi_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import DiffusionPDE, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitMPISolver
from pde.tools import mpi
@pytest.mark.multiprocessing
@pytest.mark.parametrize(
"scheme, decomposition", [("... | s2.data) | modified | cd6baad973b0e82922d216136ad0f8a70951b624916cdde015fb6c3fd5774588 | assert_*|test_stochastic_mpi_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import DiffusionPDE, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitMPISolver from pde.tools import mpi @pytest.mark.multiprocessing @pytest.mark.parametrize(... | s2.data) | 72 | 8 |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/solvers/tests/test_explicit_mpi_solvers.py | val | zwicker-group/py-pde:pde/solvers/tests/test_explicit_mpi_solvers.py | 76 | 8 | assert | test_stochastic_mpi_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import DiffusionPDE, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitMPISolver
from pde.tools import mpi
@pytest.mark.multiprocessing
@pytest.mark.parametrize(
"scheme, decomposition", [("... | not solver1.info["dt_adaptive"] | modified | 6b73e9ab3cec2441c79440aa0b5c7de27e9f6ae6a8a32abbafa317d509087276 | assert|test_stochastic_mpi_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import DiffusionPDE, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitMPISolver from pde.tools import mpi @pytest.mark.multiprocessing @pytest.mark.parametrize( "... | not solver1.info["dt_adaptive"] | 76 | 8 |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 133 | 9 | pytest.raises | test_unsupported_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | RuntimeError) | modified | 4c879826594baaae9631f35ec70c91c0b371f78e2eb4d84a22525996faaf388f | pytest.raises|test_unsupported_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver fr... | RuntimeError) | 133 | 9 |
zwicker-group/py-pde | train | 265 | 6d6c1cc87edbd4950d1e14164b7d4bf7138dfe13 | train | pde/solvers/tests/test_explicit_solvers.py | train | zwicker-group/py-pde:pde/solvers/tests/test_explicit_solvers.py | 170 | 4 | assert | test_adaptive_solver_nan | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | info["solver"]["dt_adaptive"] | modified | 2593dd222bb42d4e30da1d25e752ef8cae93f6c4473af2a6532c98549e760f26 | assert|test_adaptive_solver_nan|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from pde.tools impor... | info["solver"]["dt_adaptive"] | 170 | 4 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 158 | 8 | assert_* | test_smoothing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | fields[i].smooth(sgm).data) | modified | 5f2e49d2aa0c985bee2e776ed5870701d8a9fa28c63008de76d11356b83d95e9 | assert_*|test_smoothing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import sk... | fields[i].smooth(sgm).data) | 158 | 8 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 255 | 4 | assert | test_collection_1_field | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | ["a"] | modified | 454e541dd0a24f8b59fc88031f3f3747949dff4a12146159c48271020f190c1c | assert|test_collection_1_field|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUn... | ["a"] | 255 | 4 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 415 | 37 | pytest.approx | test_random_normal | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
... | s, rel=0.1, abs=0.1) | modified | f91088667b5d6ab62544609acfa677bdd1f28062dc9f60cbed0269311fa20b6e | pytest.approx|test_random_normal|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, Fie... | s, rel=0.1, abs=0.1) | 415 | 37 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 522 | 4 | assert_* | test_vector_from_scalars | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
... | [[[0, 1]], [[2, 3]]]) | modified | 9a947f57e6021a3ce93d9ddd764ac2580aeff27f46ea2b99f3787692579fb12b | assert_*|test_vector_from_scalars|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, Fi... | [[[0, 1]], [[2, 3]]]) | 522 | 4 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 124 | 4 | assert_* | test_gradient | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | -np.sin(x)) | modified | d1834fb0c15b2b060c6db7116ce068f1d48c2301f349c89a04276cd987c158fc | assert_*|test_gradient|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, ... | -np.sin(x)) | 125 | 4 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 344 | 8 | assert_* | test_boundary_interpolation_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | bndry_val) | modified | fccf64be1e3ba4d12e6ef8f97ec9556cce8c98b78bc02f8c43f0fb431f56a239 | assert_*|test_boundary_interpolation_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGri... | bndry_val) | 345 | 8 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_tensorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_tensorial_fields.py | 58 | 13 | pytest.raises | test_tensors_basic | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculation... | IndexError) | modified | 701ab0f37c8c820ce04e4059c8aec80cdf07b8a0519ef7b43f915d50c4313ad8 | pytest.raises|test_tensors_basic|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """tes... | IndexError) | 58 | 13 |
zwicker-group/py-pde | train | 266 | 13afce83c7d745cd79e5f457696693fb40093728 | train | tests/fields/test_tensorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_tensorial_fields.py | 156 | 4 | assert_* | test_tensor_invariants | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculation... | invs[2]) | modified | f727a7b66790cd36449cfce93bd3d6f26ba1ba82c560bbc96d99ef6bfca55d29 | assert_*|test_tensor_invariants|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test... | invs[2]) | 156 | 4 |
zwicker-group/py-pde | train | 267 | d8fc439b414735c876c051648d1ee74b05cc4b01 | train | tests/pdes/test_diffusion_pdes.py | train | zwicker-group/py-pde:tests/pdes/test_diffusion_pdes.py | 115 | 4 | assert | test_diffusion_sde | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single():
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()
... | 0.001 | modified | 840cfbbbe472cdad90894ae34ddf6e34f9bcd19b3fc8a481ff2a40f3dbefdb35 | assert|test_diffusion_sde|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid def test_diffusion_single(): """test some methods of the simple diffusion model""" eq = Dif... | 0.01 | 115 | 4 |
zwicker-group/py-pde | train | 268 | f3d78f0ce4a848ab9b733abfc13e5fa023a983da | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 226 | 4 | assert_* | test_pde_spatial_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | np.array([0.0, 0.0])) | modified | 91ebbc41bf854e06c6c110a3131dca29f93f3d10d55d44c6365f9ef1586a3d54 | assert_*|test_pde_spatial_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCD... | np.array([0.0, 0.0])) | 226 | 4 |
zwicker-group/py-pde | train | 268 | f3d78f0ce4a848ab9b733abfc13e5fa023a983da | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 290 | 8 | assert | test_pde_complex_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | res1.is_complex | modified | 5dce91fa8dd9ec22b34274f7987a9050318042343cf4d61bd887b1f76acf5242 | assert|test_pde_complex_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCData... | res1.is_complex | 290 | 8 |
zwicker-group/py-pde | train | 268 | f3d78f0ce4a848ab9b733abfc13e5fa023a983da | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 344 | 9 | pytest.raises | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | Exception) | modified | cbdfb185c162632adedff977940fd06a1d890bbf26adcc2ce966e246c3b8da1d | pytest.raises|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDa... | Exception) | 344 | 9 |
zwicker-group/py-pde | train | 268 | f3d78f0ce4a848ab9b733abfc13e5fa023a983da | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 372 | 13 | pytest.raises | test_pde_bcs_error | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | BCDataError) | modified | 1b8f93b434175dcb4aedcc7a77a24fad8fc4be06e324dd4b36e500e839da56a2 | pytest.raises|test_pde_bcs_error|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import B... | BCDataError) | 372 | 13 |
zwicker-group/py-pde | train | 268 | f3d78f0ce4a848ab9b733abfc13e5fa023a983da | train | tests/solvers/test_scipy_solvers.py | val | zwicker-group/py-pde:tests/solvers/test_scipy_solvers.py | 23 | 4 | assert_* | test_scipy_no_dt | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid
from pde.solvers import Controller, ScipySolver
def test_scipy_no_dt():
"""test scipy solver without timestep"""
grid = UnitGrid([16])
field = Scal... | s2.data) | added | 3374b4c2f84a52f08e88072d1b5191b06c5c1c08bcbcc6b299fe2ee332b96756 | assert_*|test_scipy_no_dt|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid from pde.solvers import Controller, ScipySolver def test_scipy_no_dt(): """test scipy solver without timestep""" grid = UnitGrid([16]) fi... | null | null | null |
zwicker-group/py-pde | train | 268 | f3d78f0ce4a848ab9b733abfc13e5fa023a983da | train | tests/solvers/test_scipy_solvers.py | val | zwicker-group/py-pde:tests/solvers/test_scipy_solvers.py | 33 | 4 | assert_* | test_scipy_field_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid
from pde.solvers import Controller, ScipySolver
def test_scipy_no_dt():
"""test scipy solver without timestep"""
grid = UnitGrid([16])
field = Scal... | np.array([[1.5, 2.5], [1.0, 2.0]])) | added | 2c722518480a99aa7fc3901cea41bb994447d28957111a35723855de0a18b0d0 | assert_*|test_scipy_field_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid from pde.solvers import Controller, ScipySolver def test_scipy_no_dt(): """test scipy solver without timestep""" grid = UnitGr... | null | null | null |
zwicker-group/py-pde | train | 269 | 181a4504cd04daadd0ba5bad9343adfe0d8463d7 | train | tests/trackers/test_trackers.py | train | zwicker-group/py-pde:tests/trackers/test_trackers.py | 122 | 4 | assert_* | test_callback_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | data_tracker.data) | added | 1abff9e0130f00469687227a8e76c2693dfc0263e93edd58859972d13bfded93 | assert_*|test_callback_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc im... | null | null | null |
zwicker-group/py-pde | train | 269 | 181a4504cd04daadd0ba5bad9343adfe0d8463d7 | train | tests/trackers/test_trackers.py | train | zwicker-group/py-pde:tests/trackers/test_trackers.py | 156 | 4 | assert_* | test_data_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | np.arange(11)) | added | 098807e45093c0748ebc2e06eb31ea1a61649cd1d59ae02d46728fdd803c32a6 | assert_*|test_data_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc import... | null | null | null |
zwicker-group/py-pde | train | 269 | 181a4504cd04daadd0ba5bad9343adfe0d8463d7 | train | tests/trackers/test_trackers.py | train | zwicker-group/py-pde:tests/trackers/test_trackers.py | 213 | 4 | assert | test_consistency_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | con.info["t_end"] | added | 3d3e13129debb4f167d77f747cfcfe0c460a4ea6fcdf28beacd922cc1998e94c | assert|test_consistency_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc i... | null | null | null |
zwicker-group/py-pde | train | 269 | 181a4504cd04daadd0ba5bad9343adfe0d8463d7 | train | tests/trackers/test_trackers.py | train | zwicker-group/py-pde:tests/trackers/test_trackers.py | 249 | 4 | assert_* | test_double_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | np.arange(5)) | added | 9eb307b84c53f9e42fbd3d93365397576bc2db036fd4de20c40af5f0ee396be4 | assert_*|test_double_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc impo... | null | null | null |
zwicker-group/py-pde | train | 270 | 138b563e64953df9f2e7624deb4c562266324d0d | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 30 | 9 | pytest.raises | test_basic_grid_properties | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | AttributeError) | added | 803708623fd65ef53aad39513b76310bf1365fc1ebad248c8294186026ca1360 | pytest.raises|test_basic_grid_properties|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipU... | null | null | null |
zwicker-group/py-pde | train | 270 | 138b563e64953df9f2e7624deb4c562266324d0d | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 52 | 4 | assert | test_serialization | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | g._cache_hash() | added | d0c1f5369742aed36815971e8672538e18bddcd38286b10a9f2bdfce469ca1df | assert|test_serialization|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipUnlessModule def... | null | null | null |
zwicker-group/py-pde | train | 270 | 138b563e64953df9f2e7624deb4c562266324d0d | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 79 | 8 | assert | test_iter_mirror_points | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | num_expect | added | 77e19832e6e684bfef2d14b5e3948641265488ce77a17d5a03d3c6b7cab33228 | assert|test_iter_mirror_points|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipUnlessModul... | null | null | null |
zwicker-group/py-pde | train | 270 | 138b563e64953df9f2e7624deb4c562266324d0d | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 109 | 4 | assert | test_integration_serial | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import GridBase, discretize_interval, registered_operators
from pde.tools.misc import skipUnlessModule
def iter_grids():
""... | pytest.approx(grid.integrate(arr)) | added | b9e61e5572a195d07eaebfeab0445cce9bdd151493f28bcebb03178d0c961a4f | assert|test_integration_serial|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import GridBase, discretize_interval, registered_operators from pde.tools.misc import skipUnlessModul... | null | null | null |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 512 | 4 | assert_* | test_piecewise_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | field_data) | modified | 5230e6f136cd337d5dfdb17957d28239785a0596da0f22bf3d42b43731901df9 | assert_*|test_piecewise_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, P... | field_data) | 512 | 4 |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 521 | 4 | assert_* | test_boundary_expressions_with_t | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | [2, 0, 2]) | modified | 411ffc22e3d35cdb30dc5937e95ab238d219bece8cc87d875fd59c39f4c9a3cf | assert_*|test_boundary_expressions_with_t|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianG... | [2, 0, 2]) | 521 | 4 |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/grids/operators/test_polar_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_polar_operators.py | 89 | 4 | assert_* | test_grid_laplace_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_polar():
"""test operator for a simple polar grid"""
grid... | b_2d.data[i, i]) | modified | c5e75e08cb5414bf5d12c2a7bd064fca7a2f6b2fd64c0aa3af94936f9223cceb | assert_*|test_grid_laplace_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_polar(): """test operator for a simple polar grid""" grid = ... | b_2d.data[i, i]) | 89 | 4 |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/grids/operators/test_polar_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_polar_operators.py | 146 | 8 | assert_* | test_examples_scalar_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_polar():
"""test operator for a simple polar grid"""
grid... | expect.data) | modified | 1af64b5eb29a32143eb504a1f4844af2d7779570542b244a459d6c85ad367b00 | assert_*|test_examples_scalar_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_polar(): """test operator for a simple polar grid""" grid... | expect.data) | 146 | 8 |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/grids/operators/test_spherical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_spherical_operators.py | 236 | 4 | assert_* | test_tensor_sph_symmetry | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | expect) | modified | a192231a3577e706509a7529d59a98f8e55107450757ea0e227ac1d6a17b4fe2 | assert_*|test_tensor_sph_symmetry|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical grid""" ... | expect) | 236 | 4 |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/grids/operators/test_spherical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_spherical_operators.py | 253 | 4 | assert_* | test_tensor_div_div_analytical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
def test_findiff_sph():
"""test operator for a simple spherical grid"""
... | expect.data[1:-1]) | modified | 1999a6aec29ef31d93ea50e1e2b8e4ea324fc56125153aa587adf14302ea80d2 | assert_*|test_tensor_div_div_analytical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) def test_findiff_sph(): """test operator for a simple spherical gr... | expect.data[1:-1]) | 253 | 4 |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 49 | 4 | assert_* | test_discretize | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import (
GridBase,
OperatorInfo,
discretize_interval,
registered_operators,
)
from pde.tools.misc import skipUnle... | x_expect) | added | 13681975ff3b5e8fbf56c0b5ba4e22598e7d6755c8da209eee9c89b517b42233 | assert_*|test_discretize|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import ( GridBase, OperatorInfo, discretize_interval, registered_operators, ) from pde.tools.misc import sk... | null | null | null |
zwicker-group/py-pde | train | 271 | 5b6c80652a183bb5f039722175fe573295b15f43 | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 145 | 4 | assert | test_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import (
GridBase,
OperatorInfo,
discretize_interval,
registered_operators,
)
from pde.tools.misc import skipUnle... | grid.operators | added | e130c8619b05f7d823a206753d9be3e0e8dfecbaeff8b8f65a4475c93545e278 | assert|test_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import ( GridBase, OperatorInfo, discretize_interval, registered_operators, ) from pde.tools.misc import skipU... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 302 | 8 | assert_* | test_expression_bc_setting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | f1._data_full) | added | 672c6f293cf7168e7db6a40d185023d26696c72f3dedbc6ac28136e9ef2968a2 | assert_*|test_expression_bc_setting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, regist... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 336 | 4 | assert | test_expression_bc_value | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | bc2.get_mathematical_representation("field") | added | e976670848943b69d62376204b12d06f25bfc216db8b2e26987c9e6596ee570a | assert|test_expression_bc_value|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, registered... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 461 | 4 | assert_* | test_user_bcs_numba | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | f2._data_full) | added | f0c104df6cedfdd1a104869d02760fdc915179ee60125a2bf16b1e326028b5c4 | assert_*|test_user_bcs_numba|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, registered_bo... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/pdes/test_diffusion_pdes.py | train | zwicker-group/py-pde:tests/pdes/test_diffusion_pdes.py | 122 | 4 | assert | test_diffusion_sde | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single():
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()
... | 0.001 | added | 4bb7afcc7272cf9279bb23382ab5f0661a36afa1df67cc145984686dd857a45a | assert|test_diffusion_sde|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid def test_diffusion_single(): """test some methods of the simple diffusion model""" eq = Dif... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/test_integration.py | train | zwicker-group/py-pde:tests/test_integration.py | 34 | 4 | assert_* | test_inhomogeneous_bcs_1 | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid
from pde.tools import misc, mpi, numba
@misc.skipUnlessModule("h5py")
def te... | 0.9 * np.sin(data["data_x"])) | added | ec1a71354c2451f3697f96910e251c05ef2d0c97ffa6d3adc21869bcafaa8197 | assert_*|test_inhomogeneous_bcs_1|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid from pde.tools import misc, mpi, numba @misc.sk... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/test_integration.py | train | zwicker-group/py-pde:tests/test_integration.py | 46 | 4 | assert_* | test_inhomogeneous_bcs_2 | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid
from pde.tools import misc, mpi, numba
@misc.skipUnlessModule("h5py")
def te... | expect.data) | added | 37a452aae21b1f9f9e2f018fc22241229f263ebc3ac67dab3c94984334e481ec | assert_*|test_inhomogeneous_bcs_2|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid from pde.tools import misc, mpi, numba @misc.sk... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/test_integration.py | train | zwicker-group/py-pde:tests/test_integration.py | 63 | 4 | assert | test_inhomogeneous_bcs_func | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid
from pde.tools import misc, mpi, numba
@misc.skipUnlessModule("h5py")
def te... | np.all(res.data[:16] < 0) | added | 96dcc471f9980ca551ac27bfaedc8b4f80eb4b35db6e6800310375b93ea03333 | assert|test_inhomogeneous_bcs_func|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid from pde.tools import misc, mpi, numba @misc.s... | null | null | null |
zwicker-group/py-pde | train | 272 | 7e79e42d8b1d46f24926accbd454107f91dee1d8 | train | tests/test_integration.py | train | zwicker-group/py-pde:tests/test_integration.py | 124 | 12 | assert | test_custom_pde_mpi | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid
from pde.tools import misc, mpi, numba
@misc.skipUnlessModule("h5py")
def te... | info["use_mpi"] | added | d40b6912f51a95125a8ba7bd0d2eab5ed8634c3a74a63dd0aa2bdc29a2a4e7b2 | assert|test_custom_pde_mpi|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid from pde.tools import misc, mpi, numba @misc.skipUnles... | null | null | null |
zwicker-group/py-pde | train | 273 | fe5ba43b2b47d06e3c7309289fa033b49540de18 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 561 | 9 | pytest.raises | test_dot_product | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
... | TypeError) | added | f296be72d5dceac3aeba450f2b3a58b9efa1d00e7d489c9aef3aa84a24702c28 | pytest.raises|test_dot_product|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, Field... | null | null | null |
zwicker-group/py-pde | train | 273 | fe5ba43b2b47d06e3c7309289fa033b49540de18 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 564 | 9 | pytest.raises | test_dot_product | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
... | TypeError) | added | e27ce6b1aea58c7bd963492f7b4532918e2671049c6e09fb08556861d80b762d | pytest.raises|test_dot_product|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, Field... | null | null | null |
zwicker-group/py-pde | train | 273 | fe5ba43b2b47d06e3c7309289fa033b49540de18 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 586 | 4 | assert_* | test_complex_operator | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
... | r.laplace("auto_periodic_neumann").data) | added | 195c8219be64d1086e9f7157323707de0ee97bc759847df11d444868296046b5 | assert_*|test_complex_operator|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, Field... | null | null | null |
zwicker-group/py-pde | train | 273 | fe5ba43b2b47d06e3c7309289fa033b49540de18 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 592 | 4 | assert | test_get_field_class_by_rank | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
... | ScalarField | added | 0f2c547e5e96295ce06bcc0a653f50648aa7b77e5af84eb2090fda32bd574119 | assert|test_get_field_class_by_rank|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFieldBase, ... | null | null | null |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 75 | 4 | assert_* | test_shapes_nfields | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | field_c.data) | modified | 8255517c25bf75871b4413020bc494842bbcb3878bd67f2b7d84d6e6f3482726 | assert_*|test_shapes_nfields|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import Dat... | field_c.data) | 74 | 4 |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 194 | 13 | pytest.raises | test_data_managment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | RuntimeError) | modified | d3e7ace86ee29bdd546f9fc51e310c8f3634ff96493ae25af68355f184699770 | pytest.raises|test_data_managment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base impor... | RuntimeError) | 193 | 13 |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/fields/test_tensorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_tensorial_fields.py | 205 | 8 | assert | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculation... | grid | modified | 06077ec1489b51fcdbbb596c95df9eb037fa3b54bd2f4d2983bfdae14a1bbec0 | assert|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test som... | grid | 205 | 12 |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/fields/test_tensorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_tensorial_fields.py | 211 | 4 | assert_* | test_complex_tensors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculation... | res.data) | modified | 505d03b49937a211fafe076e3a3fa0926676073d05ef6f143015592ae21b9f7d | assert_*|test_complex_tensors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test s... | res.data) | 211 | 8 |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/fields/test_tensorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_tensorial_fields.py | 232 | 9 | pytest.raises | test_from_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculation... | ValueError) | modified | 8489b7a1aed4529d62f87ea86d92f8d02af1bdc3d8842c9a160c33ff6d1fbe16 | pytest.raises|test_from_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """... | ValueError) | 232 | 9 |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 274 | 4 | assert | test_pde_complex_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | not field.is_complex | modified | c7b189eed467d25c98d360661dd652ea32903767d3aac8f25c03273111c677c3 | assert|test_pde_complex_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCData... | not field.is_complex | 274 | 4 |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 304 | 4 | assert | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | not eq.explicit_time_dependence | modified | d93152a092a82fcf6f818178f716e7967cc6236d34010f7a7966eb203e85615d | assert|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import ... | not eq.explicit_time_dependence | 304 | 4 |
zwicker-group/py-pde | train | 274 | 016180cf113b235b4e1eeb5cf1719c5dbcd79df5 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 361 | 4 | assert_* | test_pde_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from pde.tools impor... | res_b.data) | modified | b545e82a57f25a7f06b131e2f84e29d21cfbe2d4de23242c7be54f564dbc0d24 | assert_*|test_pde_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local import BCDataError ... | res_b.data) | 361 | 4 |
zwicker-group/py-pde | train | 276 | a7eb2afb918b3cda8c50c29b35cd69b67079b647 | train | tests/tools/test_parameters.py | train | zwicker-group/py-pde:tests/tools/test_parameters.py | 137 | 8 | assert | test_hidden_parameter | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parame... | t_class.get_parameters() | modified | 453daa59ca3326d8c29e698efb76cba44883ca2cee7c1e86b6d3c21f74505460 | assert|test_hidden_parameter|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import math import pickle import numpy as np import pytest from pde.tools.parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, sphinx_display_para... | t_class.get_parameters() | 137 | 8 |
zwicker-group/py-pde | train | 276 | a7eb2afb918b3cda8c50c29b35cd69b67079b647 | train | tests/tools/test_parameters.py | train | zwicker-group/py-pde:tests/tools/test_parameters.py | 143 | 13 | pytest.raises | test_hidden_parameter | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parame... | ValueError) | modified | d690415816582988354d7db7b7ae7b60aa54c00c23a8cb2b31c6363e3f257fa9 | pytest.raises|test_hidden_parameter|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import math import pickle import numpy as np import pytest from pde.tools.parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, sphinx_displ... | ValueError) | 143 | 13 |
zwicker-group/py-pde | train | 276 | a7eb2afb918b3cda8c50c29b35cd69b67079b647 | train | tests/tools/test_parameters.py | train | zwicker-group/py-pde:tests/tools/test_parameters.py | 163 | 4 | assert | test_convert_default_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parame... | isinstance(t1.parameters["a"], float) | modified | 805ce522032a05c4fd830a4745cb06a32b7db933d619ceea187e591c2dfe0857 | assert|test_convert_default_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import math import pickle import numpy as np import pytest from pde.tools.parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, sphinx_displa... | isinstance(t1.parameters["a"], float) | 163 | 4 |
zwicker-group/py-pde | train | 276 | a7eb2afb918b3cda8c50c29b35cd69b67079b647 | train | tests/tools/test_parameters.py | train | zwicker-group/py-pde:tests/tools/test_parameters.py | 184 | 4 | assert | test_convert_default_values | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parame... | caplog.text | modified | cd145f037a2b4e2f17fc09114d576b5e7bd5fda581bdb0fcc8104e12e3927ae1 | assert|test_convert_default_values|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools import logging import math import pickle import numpy as np import pytest from pde.tools.parameters import ( DeprecatedParameter, HideParameter, Parameter, Parameterized, get_all_parameters, sphinx_displa... | caplog.text | 184 | 4 |
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 254 | 4 | assert_* | test_from_image | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | img_data_gray.T[:, ::-1]) | added | ac15d76cbe3eefd77824543e50aaf9d7d63941e0720b1cfea9c95d39586272d8 | assert_*|test_from_image|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid... | null | null | null |
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 281 | 8 | assert | test_projection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | grid.dim | added | 39ddc99bb7883c08e7849cb0eaade888eeb9803cca06d3345c9484a9bd028934 | assert|test_projection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, ... | null | null | null |
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