repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 353 | 8 | assert_* | test_boundary_interpolation_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | bndry_val) | added | 2a9590b4af5494c6bdb0aa8d74bfb4a7d34026ad2e1e747638c267f3c05462fc | assert_*|test_boundary_interpolation_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGri... | null | null | null |
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 528 | 4 | assert_* | test_boundary_expressions_with_t | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | [0, 0, 0]) | added | 86eb2804763c5b530be54fdf58619cea4f26892889ada47156455baa01fe94dc | assert_*|test_boundary_expressions_with_t|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianG... | null | null | null |
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 202 | 4 | assert_* | test_from_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | xs * ys) | added | 414a562d64bfd4c44c6241030e806cc12e27faad6d8daa969c26bbd0d544656c | assert_*|test_from_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vec... | null | null | null |
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 222 | 8 | assert_* | test_boundary_interpolation_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | bndry_val) | added | 4a8c29f6eeb14db35bac5b8e92f1ad4bbdc0dbcfb97962de55e0702e1a3c70f1 | assert_*|test_boundary_interpolation_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule... | null | null | null |
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 271 | 12 | assert | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | grid | added | 9dcfdb856426f234cf3d4542ed41b787dbd644260fb7d3e8d8cdd05464d160c5 | assert|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vector... | null | null | null |
zwicker-group/py-pde | train | 277 | 26bd516f8363240130b3e4e1a493ed4b8ac6d79b | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 277 | 8 | assert_* | test_complex_vectors | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available, skipUnlessModule
def test_vectors_basic():
"""test s... | res.data) | added | 99f82238b6cd2283601d2fdc11586818afdbd7cbf81707c4cef14fd929673889 | assert_*|test_complex_vectors|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available, skipUnlessModule def test_vect... | null | null | null |
zwicker-group/py-pde | train | 278 | 49253638f13998e42b100a9c2b1308d122596463 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 142 | 4 | assert_* | test_pde_vector_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | res_b.data) | modified | e8e895b2fa5cfe9d2919755ea3ad2634d292505ad6b12035d544392b112260ed | assert_*|test_pde_vector_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.... | res_b.data) | 140 | 4 |
zwicker-group/py-pde | train | 278 | 49253638f13998e42b100a9c2b1308d122596463 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 306 | 4 | assert | test_pde_product_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | not eq.explicit_time_dependence | modified | 8d1eee8d7e75a40676205de73f85520440d6a87b1151657ca8839b9da5333aca | assert|test_pde_product_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundarie... | not eq.explicit_time_dependence | 304 | 4 |
zwicker-group/py-pde | train | 278 | 49253638f13998e42b100a9c2b1308d122596463 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 363 | 4 | assert_* | test_pde_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | res_b.data) | modified | 429a5a126ceba1e296dfe3cd50b4fabb84d57a69c5d984ae7cbceaa0e0a68bbf | assert_*|test_pde_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local impo... | res_b.data) | 361 | 4 |
zwicker-group/py-pde | train | 278 | 49253638f13998e42b100a9c2b1308d122596463 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 376 | 4 | assert | test_pde_bcs_warning | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | caplog.text | added | 79df0857a9557e604c766cdea12f98fb1986b3898f97fb7a246ff3541eca54a3 | assert|test_pde_bcs_warning|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.loca... | null | null | null |
zwicker-group/py-pde | train | 279 | 669b50fc88db12501bcb909438cefd186ae3b68b | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 90 | 13 | pytest.raises | test_const | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
evaluate,
parse_... | Exception) | added | fc5bd6e7ad990b5067d1f1e531627368ee407038dd3d347b561d3852328eab96 | pytest.raises|test_const|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpression, evaluate, pars... | null | null | null |
zwicker-group/py-pde | train | 279 | 669b50fc88db12501bcb909438cefd186ae3b68b | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 167 | 4 | assert_* | test_derivatives | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
evaluate,
parse_... | [9, 12]) | modified | c231bd8fa260a491d0f87f418079af655631863396b0c4f01f10b101ea8978ae | assert_*|test_derivatives|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpression, evaluate, par... | [[0, 6], [6, 4]]) | 167 | 4 |
zwicker-group/py-pde | train | 279 | 669b50fc88db12501bcb909438cefd186ae3b68b | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 220 | 4 | assert_* | test_tensor_expression | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
evaluate,
parse_... | np.arange(4).reshape(2, 2)) | modified | 9d957837ecb025c6e83d2886c4ba83ccaaa1982d83c0da625c80caf2fc1acea9 | assert_*|test_tensor_expression|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpression, evaluat... | np.array([1, 2])) | 222 | 4 |
zwicker-group/py-pde | train | 279 | 669b50fc88db12501bcb909438cefd186ae3b68b | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 365 | 4 | assert | test_evaluate_func_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
evaluate,
parse_... | isinstance(res, Tensor2Field) | modified | 98c7ce355c70c7d773768edd242d80ffad21c338ddd988dd0c966df3c5ded20c | assert|test_evaluate_func_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpression, evalua... | isinstance(evaluate("gradient(a)", {"a": field}), VectorField) | 362 | 4 |
zwicker-group/py-pde | train | 280 | 1fecbdf87d155974f5ee0b01efe8197b1c64a36b | train | tests/tools/test_config.py | train | zwicker-group/py-pde:tests/tools/test_config.py | 12 | 4 | assert | test_environment | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.tools.config import Config, environment, packages_from_requirements
def test_environment():
"""test the environment function"""
assert | isinstance(environment(), dict) | modified | bd51d274cd5f233180f331afb88b7ca17f5f97741f57bc1453acd7b7846393c4 | assert|test_environment|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.tools.config import Config, environment, packages_from_requirements def test_environment(): """test the environment function""" assert | isinstance(environment(), dict) | 12 | 4 |
zwicker-group/py-pde | train | 280 | 1fecbdf87d155974f5ee0b01efe8197b1c64a36b | train | tests/tools/test_config.py | train | zwicker-group/py-pde:tests/tools/test_config.py | 24 | 4 | assert | test_config | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.tools.config import Config, environment, packages_from_requirements
def test_environment():
"""test the environment function"""
assert isinstance(environment(), dict)
def test_config():
"""test configuration system"... | c.to_dict() | modified | 9f5618f9aeb255fabef4ac140ba744a11810f0d8b0210bea606c26c3533283d4 | assert|test_config|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.tools.config import Config, environment, packages_from_requirements def test_environment(): """test the environment function""" assert isinstance(environment(), dict) def test_config(): """test configuration system... | c.to_dict() | 24 | 4 |
zwicker-group/py-pde | train | 280 | 1fecbdf87d155974f5ee0b01efe8197b1c64a36b | train | tests/tools/test_config.py | train | zwicker-group/py-pde:tests/tools/test_config.py | 48 | 9 | pytest.raises | test_config_modes | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.tools.config import Config, environment, packages_from_requirements
def test_environment():
"""test the environment function"""
assert isinstance(environment(), dict)
def test_config():
"""test configuration system"... | RuntimeError) | modified | bc10999e90f563695fead57901603a0e8f80d5af5cc2a6bf0d4362c19573a431 | pytest.raises|test_config_modes|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.tools.config import Config, environment, packages_from_requirements def test_environment(): """test the environment function""" assert isinstance(environment(), dict) def test_config(): """test configu... | RuntimeError) | 48 | 9 |
zwicker-group/py-pde | train | 280 | 1fecbdf87d155974f5ee0b01efe8197b1c64a36b | train | tests/tools/test_config.py | train | zwicker-group/py-pde:tests/tools/test_config.py | 93 | 4 | assert | test_packages_from_requirements | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.tools.config import Config, environment, packages_from_requirements
def test_environment():
"""test the environment function"""
assert isinstance(environment(), dict)
def test_config():
"""test configuration system"... | "Could not open" in results[0] and "file_not_existing" in results[0] | added | 9bfa0782c498a9a50421f91784f5c977c9a2b3c225ad019c7c8f779e66913803 | assert|test_packages_from_requirements|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.tools.config import Config, environment, packages_from_requirements def test_environment(): """test the environment function""" assert isinstance(environment(), dict) def test_config(): """test ... | null | null | null |
zwicker-group/py-pde | train | 281 | b81c4d8cd6dc0c5179f40e9f7b6c892c20a966d1 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 73 | 4 | assert | test_scalars | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | pytest.approx(1) | modified | b3845487229e8f42a5433054a49ccc3d53e0b0f5b08be29610479ccee5a29e16 | assert|test_scalars|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, Uni... | pytest.approx(1) | 70 | 4 |
zwicker-group/py-pde | train | 281 | b81c4d8cd6dc0c5179f40e9f7b6c892c20a966d1 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 114 | 4 | assert | test_laplacian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | (16, 16) | modified | 7994a65620ca21c1d35536389f9b0e807cffb274a4e69175fb6fef1020d893d9 | assert|test_laplacian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSymGrid, U... | (16, 16) | 111 | 4 |
zwicker-group/py-pde | train | 281 | b81c4d8cd6dc0c5179f40e9f7b6c892c20a966d1 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 141 | 4 | assert_* | test_interpolation_to_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | sf2.data) | modified | 96a54fa984c3769270826fa24777fdf34bab34132196a9508a8fc3bfb9c64bde | assert_*|test_interpolation_to_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, P... | sf2.data) | 138 | 4 |
zwicker-group/py-pde | train | 281 | b81c4d8cd6dc0c5179f40e9f7b6c892c20a966d1 | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 545 | 4 | assert_* | test_boundary_expressions_with_t | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | [2, 0, 2]) | added | 89c9fa7bb1187c55bf41d32c6e841bd87a6e2c0d43d558b656cc983d0460dfcd | assert_*|test_boundary_expressions_with_t|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianG... | null | null | null |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 312 | 4 | assert_* | test_collection_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | v.data * 2) | added | 61811dc89f2c4161ce6ac5ef27e9c2fac3be43534f84d9fc5ca6cbe992d6b056 | assert_*|test_collection_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUn... | null | null | null |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 420 | 37 | pytest.approx | test_random_normal | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | m, rel=0.1, abs=0.1) | added | 67b222b7659c92854f2f7e202de366083f21f18ff32d49a226a07e64d0ac9c24 | pytest.approx|test_random_normal|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import... | null | null | null |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 484 | 8 | assert_* | test_fluctuations | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | expect) | added | c95c5891817066fb053fb9ce5756d48e2bdc25111d32e8eea3b738c1c223dae1 | assert_*|test_fluctuations|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataF... | null | null | null |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 518 | 4 | assert_* | test_smoothing | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | f2.data) | added | 9f2e9aafab9ff35b80f46e7ce86fba33afc051d8dc7ce3de16739ad6363365ec | assert_*|test_smoothing|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFiel... | null | null | null |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 528 | 4 | assert_* | test_vector_from_scalars | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | [[[0, 1]], [[2, 3]]]) | added | f77323be6ed0f864be0bdfc06bfabbd4b2fb5d3a0489e7097b880e4b32d0159a | assert_*|test_vector_from_scalars|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base impor... | null | null | null |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 289 | 4 | assert_* | test_complex_expression | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | np.array([1, 1j])) | modified | 0c1a02733f05be6273c610b777f95a4e11f5ec2d7aa30657bd87ce9a2a5915ad | assert_*|test_complex_expression|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorE... | np.array([1, 1j])) | 289 | 4 |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 295 | 4 | assert | test_expression_special | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | not expr.constant | modified | 8fcf9a6c0a8d5311ce81d6443790939262ac9c2d67599acc9bd24245a653eace | assert|test_expression_special|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExp... | not expr.constant | 295 | 4 |
zwicker-group/py-pde | train | 282 | 8d508f3ee2dc26e9ea485c95c0f03203d5821482 | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 414 | 4 | assert_* | test_evaluate_func_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | grid.axes_coords[0] ** 2) | added | 9e04cbc242505af25b49317409051c834fc8912819f459f40f872ac38f99bf97 | assert_*|test_evaluate_func_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, T... | null | null | null |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 89 | 4 | assert_* | test_laplace_spectral | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
from pde.tools.misc import skipUnlessModule
π = np... | l2.data) | added | 680dadce622e8f00b28cc89306503f50709774f61e91bc7548743e7970e326e1 | assert_*|test_laplace_spectral|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops from pde.tools.misc imp... | null | null | null |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 199 | 4 | assert | test_vector_laplace_cart | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
from pde.tools.misc import skipUnlessModule
π = np... | (ndim,) + bcs.grid.shape | added | c2be09911ae9d528d800f975057edf224238694afc28a0a8710a0c84e6e0e345 | assert|test_vector_laplace_cart|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops from pde.tools.misc im... | null | null | null |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 210 | 4 | assert | test_tensor_divergence_cart | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.grids.operators import cartesian as ops
from pde.tools.misc import skipUnlessModule
π = np... | (ndim,) + bcs.grid.shape | added | 74679cc6c4fd7fb6f011277a4a35f2aa6b4e72df4d5c59eb4ecda6cbf73010f6 | assert|test_tensor_divergence_cart|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.grids.operators import cartesian as ops from pde.tools.misc... | null | null | null |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 35 | 8 | assert | test_solvers_simple_fixed | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | not solver.info.get("dt_adaptive", False) | modified | 9b3458c07c76dd50498e1e610f91fbf9578f2853ab320fd2760c2b24b15fa337 | assert|test_solvers_simple_fixed|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from pde.tools impo... | not solver.info["dt_adaptive"] | 35 | 8 |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 85 | 4 | assert_* | test_solvers_time_dependent | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | expect) | modified | 0cf5249a05731edd030c755d284ff21492912a6a7a851a43ece037f96a6aeb8f | assert_*|test_solvers_time_dependent|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from pde.tools ... | expect) | 85 | 4 |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 111 | 4 | assert | test_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | solver2.info["stochastic"] | modified | 427ac50b5907d119a071457f3555d35a8ddc64fa48af15c0646f031ae5ad43d9 | assert|test_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from pde.tools import... | solver2.info["stochastic"] | 111 | 4 |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/solvers/test_generic_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_generic_solvers.py | 22 | 4 | assert | test_solver_registration | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import (
Controller,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
registered_solvers,
)
from pd... | solvers | modified | 3c819e78d1b9c3252b6481654eeb1626796e68259fb4d9e2138a580777b45a64 | assert|test_solver_registration|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid from pde.solvers import ( Controller, ExplicitSolver, ImplicitSolver, ScipySolver, registered_solvers,... | solvers | 21 | 4 |
zwicker-group/py-pde | train | 283 | f42618a1dc3867dc3eac1f0dd67b832bd7ac8209 | train | tests/solvers/test_generic_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_generic_solvers.py | 88 | 4 | assert | test_basic_adaptive_solver | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import (
Controller,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
registered_solvers,
)
from pd... | 0.0005 | added | c633ef8040f382afefe81a712cf24434d3ee137f08778228b6cd986ce3b2dfcb | assert|test_basic_adaptive_solver|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid from pde.solvers import ( Controller, ExplicitSolver, ImplicitSolver, ScipySolver, registered_solver... | null | null | null |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/grids/test_grid_mesh.py | train | zwicker-group/py-pde:tests/grids/test_grid_mesh.py | 264 | 4 | assert | test_integration_parallel | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import DiffusionPDE, FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid, UnitGrid
from pde.grids._mesh import GridMesh
from pde.tools ... | rank > 0 or np.isscalar(res) | modified | 0b206610ca2780e1fe51b23b5f52be6a141ae0d0c40185e9b539cc2166efc599 | assert|test_integration_parallel|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import DiffusionPDE, FieldCollection, ScalarField, Tensor2Field, VectorField from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid, UnitGrid from pde.grids._mesh ... | rank > 0 or np.isscalar(res) | 264 | 4 |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 377 | 4 | assert | test_pde_bcs_warning | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | caplog.text | modified | b0b1400383750733be86edeb6571b8ade4047e95b2221286db4a30a34f7a4385 | assert|test_pde_bcs_warning|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.loca... | caplog.text | 376 | 4 |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/solvers/test_explicit_mpi_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_mpi_solvers.py | 47 | 12 | assert | test_simple_pde_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import DiffusionPDE, ScalarField, UnitGrid
from pde.solvers import Controller, ExplicitMPISolver
from pde.tools import mpi
@pytest.mark.multiprocessing
@pytest.mark.parametrize(
"scheme, decomposition", [("... | info["solver"]["use_mpi"] | modified | 29266e442e7c14dc77bed72443eba61ca8a838ceaa8edf5ed8ba505f7f3993e1 | assert|test_simple_pde_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import DiffusionPDE, ScalarField, UnitGrid from pde.solvers import Controller, ExplicitMPISolver from pde.tools import mpi @pytest.mark.multiprocessing @pytest.mark.parametrize( "scheme, ... | info["solver"]["use_mpi"] | 47 | 12 |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 135 | 9 | pytest.raises | test_unsupported_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | RuntimeError) | modified | 302a73ae58d0b0f87bf0bda39aeb82a4aad7f743607f67b36868812424222a58 | pytest.raises|test_unsupported_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver fr... | RuntimeError) | 135 | 9 |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/solvers/test_scipy_solvers.py | val | zwicker-group/py-pde:tests/solvers/test_scipy_solvers.py | 33 | 4 | assert_* | test_scipy_field_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid
from pde.solvers import Controller, ScipySolver
def test_scipy_no_dt():
"""test scipy solver without timestep"""
grid = UnitGrid([16])
field = Scal... | np.array([[1.5, 2.5], [1.0, 2.0]])) | modified | 72681cdd58f6a77b3d9e154f698ca09b1393c38a7297615f9f228b75068a3744 | assert_*|test_scipy_field_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import PDE, DiffusionPDE, FieldCollection, ScalarField, UnitGrid from pde.solvers import Controller, ScipySolver def test_scipy_no_dt(): """test scipy solver without timestep""" grid = UnitGr... | np.array([[1.5, 2.5], [1.0, 2.0]])) | 33 | 4 |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/test_integration.py | train | zwicker-group/py-pde:tests/test_integration.py | 112 | 8 | assert | test_custom_pde_mpi | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid
from pde.tools import misc, mpi, numba
@misc.skipUnlessModule("h5py")
def te... | caplog.text | modified | 6ac7411d105268e647c4f658e8f4870310d76fdc09ad6a11040095417c3c4645 | assert|test_custom_pde_mpi|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid from pde.tools import misc, mpi, numba @misc.skipUnles... | caplog.text | 112 | 8 |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/tools/test_cache.py | val | zwicker-group/py-pde:tests/tools/test_cache.py | 155 | 4 | assert | test_serializer | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import collections
import copy
import gc
import sys
import numpy as np
import pytest
from pde.tools import cache
def deep_getsizeof(obj, ids=None):
"""Find the memory footprint of a Python object
This is a recursive function that drills down ... | encode([2, 3, 1]) | modified | ccd664e86a8e44631d222441cbb0ce330a51cd3420cf020a88588bc01c58e339 | assert|test_serializer|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import collections import copy import gc import sys import numpy as np import pytest from pde.tools import cache def deep_getsizeof(obj, ids=None): """Find the memory footprint of a Python object This is a recursive function that dri... | encode([2, 3, 1]) | 154 | 4 |
zwicker-group/py-pde | train | 284 | 36f1f4d4013814654bcf4a784ad0dae2b4d867a3 | train | tests/trackers/test_trackers.py | train | zwicker-group/py-pde:tests/trackers/test_trackers.py | 236 | 8 | assert | test_get_named_trackers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | isinstance(tracker, cls) | modified | a2ebcdbc31de9791f68f8ff8a6ed4d8858a1d3a38a9d178d27e15ea263e1c876 | assert|test_get_named_trackers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc im... | isinstance(tracker, cls) | 236 | 8 |
zwicker-group/py-pde | train | 285 | a1c9e4fdf860cf83ea50a722ee4c69442dad04b3 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 229 | 4 | assert_* | test_pde_spatial_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | np.array([0.0, 0.0, 0.0, 0.0])) | modified | 7a401cf40297697f2220875afc69d6aac3825bd9a510ad2a33d7887f45ae9142 | assert_*|test_pde_spatial_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.l... | np.array([0.0, 0.0, 0.0, 0.0])) | 229 | 4 |
zwicker-group/py-pde | train | 285 | a1c9e4fdf860cf83ea50a722ee4c69442dad04b3 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 337 | 4 | assert_* | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | field.data) | modified | cd8ec6504056ee646d14242ae9e41fda332349843b072f6d050d674578099a2a | assert_*|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local i... | field.data) | 337 | 4 |
zwicker-group/py-pde | train | 285 | a1c9e4fdf860cf83ea50a722ee4c69442dad04b3 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 388 | 13 | pytest.raises | test_pde_bcs_error | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | BCDataError) | modified | da6322cded94c4900067789254fde579ab2509aef78bbe15b39bdba556ac4d64 | pytest.raises|test_pde_bcs_error|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries... | BCDataError) | 388 | 13 |
zwicker-group/py-pde | train | 285 | a1c9e4fdf860cf83ea50a722ee4c69442dad04b3 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 461 | 8 | assert_* | test_pde_const_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | res_b.data) | modified | d5c3534240dee4d56c3dd19610b36a20298f0afdd25ec1badbd3354eda004912 | assert_*|test_pde_const_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.loca... | res_b.data) | 461 | 8 |
zwicker-group/py-pde | train | 286 | 71ea673b6a88abdb0b108f57783308a1e898cf57 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 61 | 8 | assert_* | test_solvers_simple_adaptive | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | y0 * np.exp(10.1)) | modified | e20288ab78daf3b5f938feeb42d2d8a3149119ddb4031397303af444958d3936 | assert_*|test_solvers_simple_adaptive|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from pde.tools... | y0 * np.exp(10.1)) | 58 | 8 |
zwicker-group/py-pde | train | 286 | 71ea673b6a88abdb0b108f57783308a1e898cf57 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 93 | 8 | assert | test_solvers_time_dependent | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | pytest.approx(20 / dt, abs=1) | modified | 42f7e5727ecaa4929205605bd61433973f76b0d4cfb2f43ca9a4e29164ac3fcb | assert|test_solvers_time_dependent|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from pde.tools im... | pytest.approx(20 / dt, abs=1) | 90 | 8 |
zwicker-group/py-pde | train | 286 | 71ea673b6a88abdb0b108f57783308a1e898cf57 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 114 | 4 | assert | test_stochastic_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | solver2.info["stochastic"] | modified | b0467ad5e242e0ce02a0141faf947973489b10951f0ba0b8d8e9f17bf506ae6f | assert|test_stochastic_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from pde.tools import... | solver2.info["stochastic"] | 111 | 4 |
zwicker-group/py-pde | train | 286 | 71ea673b6a88abdb0b108f57783308a1e898cf57 | train | tests/solvers/test_explicit_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_explicit_solvers.py | 125 | 9 | pytest.raises | test_stochastic_adaptive_solver | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.multiproc... | RuntimeError) | modified | 8279b27c5c759be5c738483fe6641ba51f063658e4d152065de698345c5bc33b | pytest.raises|test_stochastic_adaptive_solver|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid from pde.pdes import PDEBase from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver from p... | RuntimeError) | 122 | 9 |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/operators/test_cylindrical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cylindrical_operators.py | 110 | 4 | assert_* | test_grid_laplace | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | b_3d.data) | added | 01e54aa2f94728ffdfa0e0c5f895f1dc9217d3621f8abd28dfff09e5cff14985 | assert_*|test_grid_laplace|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 * np.pi... | null | null | null |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/operators/test_cylindrical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cylindrical_operators.py | 122 | 4 | assert | test_gradient_squared_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | not np.array_equal(s2.data, s3.data) | added | 315c9cd60b6fc842b3b6d6f6186778b1564b2e70811449236fb0f76b6070768e | assert|test_gradient_squared_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 *... | null | null | null |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/operators/test_cylindrical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cylindrical_operators.py | 138 | 4 | assert_* | test_grid_div_grad_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | res.data[1:-1]) | added | 7a865e627cb62925cab831482d6efb4018b7f42645375bd61a309a4850543133 | assert_*|test_grid_div_grad_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | null | null | null |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/operators/test_cylindrical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cylindrical_operators.py | 229 | 4 | assert_* | test_examples_tensor_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
)
def test_laplacian_field_cyl():
"""test the gradient operator"""
grid = CylindricalSymGrid(2 * np.pi, [0, 2 * ... | expect.data) | added | eb0be509766c23588cf5547202d0a6eed2c1abd5811ebba7a54b8c3857bdf146 | assert_*|test_examples_tensor_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, ) def test_laplacian_field_cyl(): """test the gradient operator""" grid = CylindricalSymGrid(2 * np.pi, [0, 2 ... | null | null | null |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/test_cylindrical_grids.py | train | zwicker-group/py-pde:tests/grids/test_cylindrical_grids.py | 24 | 4 | assert | test_cylindrical_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalSymGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("periodic", [True, False])
@pytest.mark.parametrize("r_inner", [0, 2])
def test_cy... | pytest.approx(3) | added | 2f04c17042335f99772e2e8bac5bfcfc742262b7bbb41b14a5cf5859f81772ee | assert|test_cylindrical_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalSymGrid, ScalarField from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("periodic", [True, False]) @pytest.mark.parametrize("r_in... | null | null | null |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/test_cylindrical_grids.py | train | zwicker-group/py-pde:tests/grids/test_cylindrical_grids.py | 60 | 4 | assert_* | test_cylindrical_to_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalSymGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("periodic", [True, False])
@pytest.mark.parametrize("r_inner", [0, 2])
def test_cy... | pf_cart2.data) | added | 2a30735a20bffb26c1e8a13f3b57f9ed2f8311c66a6c9d3d6c0cffa849d58202 | assert_*|test_cylindrical_to_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalSymGrid, ScalarField from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("periodic", [True, False]) @pytest.mark.paramet... | null | null | null |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/test_cylindrical_grids.py | train | zwicker-group/py-pde:tests/grids/test_cylindrical_grids.py | 82 | 9 | pytest.raises | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalSymGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("periodic", [True, False])
@pytest.mark.parametrize("r_inner", [0, 2])
def test_cy... | RuntimeError) | added | ceec11a67d28a36d032b259322ed56703c06b3986c33fd8ca0503c15df931226 | pytest.raises|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalSymGrid, ScalarField from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("periodic", [True, False]) @pytest.mark... | null | null | null |
zwicker-group/py-pde | train | 288 | d31300b19de08ba284ee970305b156f073432bb7 | train | tests/grids/test_cylindrical_grids.py | train | zwicker-group/py-pde:tests/grids/test_cylindrical_grids.py | 94 | 4 | assert | test_polar_conversion | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, CylindricalSymGrid, ScalarField
from pde.grids.boundaries.local import NeumannBC
@pytest.mark.parametrize("periodic", [True, False])
@pytest.mark.parametrize("r_inner", [0, 2])
def test_cy... | np.any(dists > 0.8 * np.sqrt(2)) | added | 0d210398d2793fc6f445f09cf8153c08f514add226bcafa3ec04c293c8236000 | assert|test_polar_conversion|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, CylindricalSymGrid, ScalarField from pde.grids.boundaries.local import NeumannBC @pytest.mark.parametrize("periodic", [True, False]) @pytest.mark.parametrize("r_in... | null | null | null |
zwicker-group/py-pde | train | 289 | 97e01e0be3311d5f26140f37c17bb1f47f9dc98d | train | tests/storage/test_generic_storages.py | train | zwicker-group/py-pde:tests/storage/test_generic_storages.py | 283 | 4 | assert | test_storing_transformation_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | storage.has_collection | added | e31e48fe9593878ae51d5037a469f2b69edb45e991dd6f8f7bfd915c73d1f6f3 | assert|test_storing_transformation_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorFiel... | null | null | null |
zwicker-group/py-pde | train | 289 | 97e01e0be3311d5f26140f37c17bb1f47f9dc98d | train | tests/storage/test_generic_storages.py | train | zwicker-group/py-pde:tests/storage/test_generic_storages.py | 286 | 8 | assert_* | test_storing_transformation_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | 2 * a.data + t) | added | 3ec8471d266be4f68d812283266793ccddc1147888e777028d045f1c5919af11 | assert_*|test_storing_transformation_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorFi... | null | null | null |
zwicker-group/py-pde | train | 289 | 97e01e0be3311d5f26140f37c17bb1f47f9dc98d | train | tests/storage/test_generic_storages.py | train | zwicker-group/py-pde:tests/storage/test_generic_storages.py | 300 | 4 | assert | test_storing_transformation_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | not storage.has_collection | added | 4784344481d3972726be5a4f75295b93c9033470405321ad04d006fa98e4a4c6 | assert|test_storing_transformation_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField fr... | null | null | null |
zwicker-group/py-pde | train | 289 | 97e01e0be3311d5f26140f37c17bb1f47f9dc98d | train | tests/storage/test_generic_storages.py | train | zwicker-group/py-pde:tests/storage/test_generic_storages.py | 302 | 8 | assert_* | test_storing_transformation_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | field.data**2) | added | ca5238cfab7fe84d33bb19077a8f6d2541b1d56103f2c3f6b6b7d459aa26585b | assert_*|test_storing_transformation_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField ... | null | null | null |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 392 | 4 | assert | test_expression_bc_polar_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | state._data_full[-1] | modified | d65ac5a6f207274285766990656df823f449646f926eb015890a0bf4071d2508 | assert|test_expression_bc_polar_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, regis... | state._data_full[-1] | 392 | 4 |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 398 | 4 | assert | test_getting_registered_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | isinstance(registered_boundary_condition_names(), dict) | modified | a0e77ebeccee95365c0f3787a60ad7fbb13ffc0fc59f151266dd61094eb437f9 | assert|test_getting_registered_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, registe... | isinstance(registered_boundary_condition_names(), dict) | 398 | 4 |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 427 | 4 | assert_* | test_user_bcs_numpy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | f2._data_full) | modified | ce9405f2a3196da190e8560dfa09f23c52022c9e25c0eaed81e3035ef97ead88 | assert_*|test_user_bcs_numpy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, registered_bo... | f2._data_full) | 427 | 4 |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/pdes/test_diffusion_pdes.py | train | zwicker-group/py-pde:tests/pdes/test_diffusion_pdes.py | 122 | 4 | assert | test_diffusion_sde | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single():
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()
... | 0.001 | modified | 98e218d310a764444dc1dd83baacd768410edc1733157c4fc03016ed1b0c09cb | assert|test_diffusion_sde|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid def test_diffusion_single(): """test some methods of the simple diffusion model""" eq = Dif... | 0.001 | 122 | 4 |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 470 | 4 | assert_* | test_pde_heaviside | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | np.array([-1.0, 2])) | added | 0f9de8e8a05e5bd4b902b222fe22d53aa1db3972d8cbab63657647587ee74b60 | assert_*|test_pde_heaviside|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.loca... | null | null | null |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 324 | 4 | assert | test_expression_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | expr.constant | added | c36f5b874be24b59e7b85dddf74da2071ad85233b125ac62b1563f8cdcc5eee0 | assert|test_expression_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpr... | null | null | null |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 356 | 4 | assert | test_evaluate_func_scalar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | "complex" | added | e92f09ec91e83c22a7db1a07b70f8929b81ead35c8fa1e2ad1c449a5d1cdd9e5 | assert|test_evaluate_func_scalar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorE... | null | null | null |
zwicker-group/py-pde | train | 292 | f8a0723e4d4b4caf44f5d84ab311e06aa94ff5da | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 413 | 4 | assert | test_evaluate_func_bcs_warning | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | caplog.text | added | 2db6a144fe780b3b300f088a295ec83b2b9dd01cb41310e3605704c5ed88689e | assert|test_evaluate_func_bcs_warning|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, Te... | null | null | null |
zwicker-group/py-pde | train | 293 | 1441e20a8ec035c7d27961570de25a1fb6902c92 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 260 | 4 | assert | test_pde_complex_serial | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | not field.is_complex | modified | 42d53832fb5b24800ef3d8f029ca11668787242876b5c539c35619f71bbb82f3 | assert|test_pde_complex_serial|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.l... | not field.is_complex | 260 | 4 |
zwicker-group/py-pde | train | 293 | 1441e20a8ec035c7d27961570de25a1fb6902c92 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 294 | 8 | assert_* | test_pde_complex_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | expect.data) | modified | dcc86f47b6030cf2cb2b3cb13249e6d1ad02881f65df6425bb2a23b3d32940e7 | assert_*|test_pde_complex_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.lo... | expect.data) | 294 | 8 |
zwicker-group/py-pde | train | 293 | 1441e20a8ec035c7d27961570de25a1fb6902c92 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 337 | 4 | assert_* | test_pde_consts | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | field.data) | modified | 30af92e4e9b6d0673e147c10eecd1a01b95cd8a9ea8f1fe949403c8d134d1be6 | assert_*|test_pde_consts|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local i... | field.data) | 337 | 4 |
zwicker-group/py-pde | train | 293 | 1441e20a8ec035c7d27961570de25a1fb6902c92 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 421 | 8 | assert_* | test_pde_integral | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | field.data - field.magnitude) | modified | 052a68189a48ee4746f2ba58d86d44be1ef5204dd9236000e3b4b34ed640576e | assert_*|test_pde_integral|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.local... | field.data - field.magnitude) | 421 | 8 |
zwicker-group/py-pde | train | 294 | 181a8349c9f34296bc7073b24cc1487c6a6870fd | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 190 | 8 | assert_* | test_smoothing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | fields[i].smooth(sgm).data) | added | 35b801e3642e8019e79880bf558e077a9e8443ed8fe2c318b935925a5cbf193f | assert_*|test_smoothing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import sk... | null | null | null |
zwicker-group/py-pde | train | 294 | 181a8349c9f34296bc7073b24cc1487c6a6870fd | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 244 | 4 | assert | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | ["s1", None] | added | 8ef8d3bac9bc84f52af6b04c63464fa2fe4d9149da0de3b277480a1d6aefdad6 | assert|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessMo... | null | null | null |
zwicker-group/py-pde | train | 294 | 181a8349c9f34296bc7073b24cc1487c6a6870fd | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 287 | 4 | assert | test_collection_1_field | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | ["a"] | added | 4fcc8f2ae5a576dbab5ede27844a2773ee269dbd4f91cf82ab894ee70489dfb9 | assert|test_collection_1_field|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUn... | null | null | null |
zwicker-group/py-pde | train | 294 | 181a8349c9f34296bc7073b24cc1487c6a6870fd | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 323 | 4 | assert | test_from_data | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | ["a", "b"] | added | 5c725f3972c3e3bc7169bfd6128d5120271081740d56bcf777cb25c35164f8ad | assert|test_from_data|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessModul... | null | null | null |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 218 | 4 | assert | test_tensor_divergence_cart | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | (ndim,) + bcs.grid.shape | added | 07cff3164e86c8b4a03b5394f392991963d6a22195d22ab98e46e4791789f51e | assert|test_tensor_divergence_cart|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import cartesi... | null | null | null |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 298 | 4 | assert_* | test_rect_div_grad | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | -field.data) | added | 8c4d856a85e33497d479ce4edd94758c693ed032c4508b38ffafc2d2e21fec87 | assert_*|test_rect_div_grad|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import cartesian as o... | null | null | null |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_cylindrical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cylindrical_operators.py | 99 | 4 | assert_* | test_findiff_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids... | [[8, 8], [y1, y1], [y2, y2]]) | added | 74e7fd98641b811a376ca529f2190651488c500fd1f73168bdfb9d8dadfe6f7b | assert_*|test_findiff_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, solve_poisson_equation, ) from pde.grids.operators.common import make_laplace_from_matrix from pde.grids... | null | null | null |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_cylindrical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cylindrical_operators.py | 125 | 4 | assert_* | test_gradient_squared_cyl | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids... | s3.data) | added | 1c8241625fcfa09a7d3d84df6f0415b99031d279161df441f59bb4aaa27deda9 | assert_*|test_gradient_squared_cyl|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, CylindricalSymGrid, ScalarField, Tensor2Field, VectorField, solve_poisson_equation, ) from pde.grids.operators.common import make_laplace_from_matrix from ... | null | null | null |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_polar_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_polar_operators.py | 32 | 4 | assert_* | test_findiff_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.opera... | [1, 3, 2]) | modified | d091af9d493ab98d6be64cc7251e3ad90e836e4c5487291b6737639bf381b3d1 | assert_*|test_findiff_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField, solve_poisson_equation, ) from pde.grids.operators.common import make_laplace_from_matrix from pde.grids.ope... | [1, 3, 2]) | 30 | 4 |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_polar_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_polar_operators.py | 117 | 4 | assert_* | test_grid_div_grad_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.opera... | res.data[1:-1]) | modified | 9045c0de6e5500a5819e994304ce41c52ba4376bc9a1246fdc395b02bde25bd9 | assert_*|test_grid_div_grad_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, VectorField, solve_poisson_equation, ) from pde.grids.operators.common import make_laplace_from_matrix from pde.gri... | res.data[1:-1]) | 115 | 4 |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_spherical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_spherical_operators.py | 160 | 4 | assert_* | test_examples_scalar_sph | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.o... | expect.data) | modified | da188bab69a07b5b106576e8c7a26124768e8d9e9cb515e83ee0b39a9333be0e | assert_*|test_examples_scalar_sph|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) from pde.grids.operators.common import make_laplace_from_matrix from pde... | expect.data) | 158 | 4 |
zwicker-group/py-pde | train | 295 | 636ac6af9b4c40ad929bfd6fe447e455f06d5d64 | train | tests/grids/operators/test_spherical_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_spherical_operators.py | 189 | 4 | assert_* | test_examples_vector_sph | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.o... | expect.data) | modified | e42b3be666f9af1c32fd9eb4fb1b9fb4238abd7dce439235bd1ccbd26db61366 | assert_*|test_examples_vector_sph|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import ( CartesianGrid, ScalarField, SphericalSymGrid, Tensor2Field, VectorField, solve_poisson_equation, ) from pde.grids.operators.common import make_laplace_from_matrix from pde... | expect.data) | 187 | 4 |
zwicker-group/py-pde | train | 296 | d9c931a8361eaf27bc3766daba26edc11756b5f5 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 177 | 4 | assert | test_gradient_cart | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | (ndim,) + bcs.grid.shape | modified | 7872ce134f6935c03fb712fe1b39250448c7dd8da6eb5f78aec6b19da6fe7a53 | assert|test_gradient_cart|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import cartesian as ops... | (ndim,) + bcs.grid.shape | 174 | 4 |
zwicker-group/py-pde | train | 296 | d9c931a8361eaf27bc3766daba26edc11756b5f5 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 254 | 8 | assert_* | test_div_grad_linear | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | np.zeros(32)) | modified | fa4375921bf56a56f29e3a4b253e75a47927ef6893595a32050c67c28993acc8 | assert_*|test_div_grad_linear|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import cartesian as... | np.zeros(32)) | 251 | 8 |
zwicker-group/py-pde | train | 296 | d9c931a8361eaf27bc3766daba26edc11756b5f5 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 301 | 4 | assert_* | test_rect_div_grad | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | -field.data) | modified | 57e127cfa7649b851f933443d21aff25bd9fe75292374770eafa9f7431d9dbff | assert_*|test_rect_div_grad|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import cartesian as o... | -field.data) | 298 | 4 |
zwicker-group/py-pde | train | 296 | d9c931a8361eaf27bc3766daba26edc11756b5f5 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 340 | 8 | assert_* | test_make_derivative | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | res.data) | modified | 44a7ddb268f4b3735a50722533b3bf311470432110ed2fc7b707aff544a19ce1 | assert_*|test_make_derivative|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import cartesian as... | res.data) | 337 | 8 |
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 195 | 8 | assert_* | test_smoothing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | fields[i].smooth(sgm).data) | modified | 34a81f657556ab00c0e247a9f0e4dbf08561d6507d8a5a7b71607876167301b7 | assert_*|test_smoothing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import sk... | fields[i].smooth(sgm).data) | 195 | 8 |
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 207 | 4 | assert | test_scalar_random_uniform | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | not np.allclose(fc[0].data, fc[1].data) | modified | cbff0e254106d6da7791d62b4ccfaf69c2922f77284f7b287ba4c914780fa87d | assert|test_scalar_random_uniform|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import ski... | not np.allclose(fc[0].data, fc[1].data) | 207 | 4 |
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 259 | 4 | assert | test_field_labels | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | ["c"] | modified | 595920181d24f34ad012a11efd59384dd7366d4a756168314c75463958e7b641 | assert|test_field_labels|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessMo... | ["c"] | 259 | 4 |
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 324 | 4 | assert_* | test_from_data | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | f2.data) | modified | 62d36f09516828f781f6f519d438ff807517ca2741c5502de8ae0981b7946d4a | assert_*|test_from_data|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessMod... | f2.data) | 324 | 4 |
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 428 | 4 | assert | test_evaluate_func_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | isinstance(res, ScalarField) | modified | 867acee95d8f546308a5194d9be9a5e77a57c270b4b08f036e25c6d7b7e0e681 | assert|test_evaluate_func_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, Ten... | isinstance(res, ScalarField) | 428 | 4 |
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 429 | 4 | assert_* | test_evaluate_func_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | grid.axes_coords[0] ** 2) | modified | e0789c1e11c5096fbb741b9634a2327a8c3631e3170a48c0fa272f61b5d7447b | assert_*|test_evaluate_func_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, T... | grid.axes_coords[0] ** 2) | 429 | 4 |
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