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There is evidence that lipids can be allosteric regulators of membrane protein structure and activation . However , there are no data showing how exactly the regulation emerges from specific lipid-protein interactions . Here we show in atomistic detail how the human β2-adrenergic receptor ( β2AR ) – a prototypical G pr... | Proteins known as G protein-coupled receptors , or GPCRs for short , detect and respond to hormones and other signaling molecules found outside cells . A signaling molecule activates a GPCR by binding to it and causing the receptor to change its shape . This triggers a cascade of signals inside the cell that leads to t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"computational",
"and",
"systems",
"biology"
] | 2016 | Mechanism of allosteric regulation of β2-adrenergic receptor by cholesterol |
The Notch pathway is integrated into numerous developmental processes and therefore is fine-tuned on many levels , including receptor production , endocytosis , and degradation . Notch is further characterized by a twofold relationship with its Delta-Serrate ( DSL ) ligands , as ligands from opposing cells ( trans-liga... | Many biological processes require cells to send messages to one another . Typically , this is achieved when molecules are released from one cell and make contact with companion molecules on another cell . This triggers a chemical or biological reaction in the receiving cell . One of the most common examples of this is ... | [
"Abstract",
"Main",
"text",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"short",
"report",
"cell",
"biology"
] | 2014 | Cis-interactions between Notch and its ligands block ligand-independent Notch activity |
The characterization of the transcriptome and proteome of Plasmodium falciparum has been a tremendous resource for the understanding of the molecular physiology of this parasite . However , the translational dynamics that link steady-state mRNA with protein levels are not well understood . In this study , we bridge thi... | The genome of an organism includes all of the genes or information necessary to build , maintain , and replicate that organism . However , cells with the same genome—such as a skin cell and a liver cell from the same person—can look and behave very differently depending on which of the genes in their genomes they expre... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages |
Crucial roles for T-box3 in development are evident by severe limb malformations and other birth defects caused by T-box3 mutations in humans . Mechanisms whereby T-box3 regulates limb development are poorly understood . We discovered requirements for T-box at multiple stages of mouse limb development and distinct mole... | Mutations in the gene that encodes a protein called T-box3 cause serious birth defects , including deformities of the hands and feet , via poorly understood mechanisms . Several other proteins are also important for ensuring that limbs develop correctly . These include the Sonic Hedgehog protein , which controls a sign... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2016 | T-box3 is a ciliary protein and regulates stability of the Gli3 transcription factor to control digit number |
Herd immunity , a process in which resistant individuals limit the spread of a pathogen among susceptible hosts has been extensively studied in eukaryotes . Even though bacteria have evolved multiple immune systems against their phage pathogens , herd immunity in bacteria remains unexplored . Here we experimentally dem... | When a disease spreads through a population , it encounters certain individuals it cannot infect . If there are enough of these individuals , the epidemic stops . This phenomenon is known as ‘herd immunity’ , and it occurs in many animals – for example , it plays an important role in human vaccination schemes . While b... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"evolutionary",
"biology"
] | 2018 | CRISPR-based herd immunity can limit phage epidemics in bacterial populations |
Rhomboid proteases reside within cellular membranes , but the advantage of this unusual environment is unclear . We discovered membrane immersion allows substrates to be identified in a fundamentally-different way , based initially upon exposing ‘masked’ conformational dynamics of transmembrane segments rather than seq... | Proteases are enzymes that break the peptide bonds that hold proteins together , and have a central role in many physiological processes , including digestion , blood clotting and programmed cell death . An important characteristic of proteases is that they are highly selective , only cutting proteins that contain well... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2012 | Membrane immersion allows rhomboid proteases to achieve specificity by reading transmembrane segment dynamics |
Carboxysomes are protein-based bacterial organelles encapsulating key enzymes of the Calvin-Benson-Bassham cycle . Previous work has implicated a ParA-like protein ( hereafter McdA ) as important for spatially organizing carboxysomes along the longitudinal axis of the model cyanobacterium Synechococcus elongatus PCC 79... | Cyanobacteria are tiny organisms that can harness the energy of the sun to power their cells . Many of the tools required for this complex photosynthetic process are packaged into small compartments inside the cell , the carboxysomes . In Synechococcus elongatus , a cyanobacterium that is shaped like a rod , the carbox... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"physics",
"of",
"living",
"systems",
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | Protein gradients on the nucleoid position the carbon-fixing organelles of cyanobacteria |
The pervasive occurrence of sexual dimorphism demonstrates different adaptive strategies of males and females . While different reproductive strategies of the two sexes are well-characterized , very little is known about differential functional requirements of males and females in their natural habitats . Here , we stu... | Male and female animals of the same species sometimes differ in appearance and sexual behavior , a phenomenon known as sexual dimorphism . Both sexes share most of the same genes , but differences can emerge because of the way these are read by cells to create proteins – a process called gene expression . For instance ... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"genetics",
"and",
"genomics"
] | 2020 | Rapid sex-specific adaptation to high temperature in Drosophila |
The motor cortex ( M1 ) is classically considered an agranular area , lacking a distinct layer 4 ( L4 ) . Here , we tested the idea that M1 , despite lacking a cytoarchitecturally visible L4 , nevertheless possesses its equivalent in the form of excitatory neurons with input–output circuits like those of the L4 neurons... | In 1909 , a German scientist called Korbinian Brodmann published the first map of the outer layer of the human brain . After staining neurons with a dye and studying the structures of the cells and how they were organized , he realized that he could divide the cortex into 43 numbered regions . Most Brodmann areas can b... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity |
Methylation of histone H3 at lysine 36 ( H3K36me ) , a widely-distributed chromatin mark , largely results from association of the lysine methyltransferase ( KMT ) SET-2 with RNA polymerase II ( RNAPII ) , but most eukaryotes also have additional H3K36me KMTs that act independently of RNAPII . These include the ortholo... | Not all genes in a cell’s DNA are active all the time . There are several ways to control this activity . One is by altering how the DNA is packaged into cells . DNA strands are wrapped around proteins called histones to form nucleosomes . Nucleosomes can then be packed together tightly , to restrict access to the DNA ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"genetics",
"and",
"genomics"
] | 2018 | ASH1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin |
The mechanosensitive channel of large conductance , which serves as a model system for mechanosensitive channels , has previously been crystallized in the closed form , but not in the open form . Ensemble measurements and electrophysiological sieving experiments show that the open-diameter of the channel pore is >25 Å ... | Bacterial cells are full of fluid , and they will burst if they are not able to respond to a build up of pressure . Fortunately , the membrane of a bacterial cell contains channels that can detect the increased mechanical stress on the cell membrane and then open to relieve the pressure . In many bacterial cells , the ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2014 | Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel |
Spontaneous fluctuations in neuronal activity emerge at many spatial and temporal scales in cortex . Population measures found these fluctuations to organize as scale-invariant neuronal avalanches , suggesting cortical dynamics to be critical . Macroscopic dynamics , though , depend on physiological states and are ambi... | Even when we are not engaged in any specific task , the brain shows coordinated patterns of spontaneous activity that can be monitored using electrodes placed on the scalp . This resting activity shapes the way that the brain responds to subsequent stimuli . Changes in resting activity patterns are seen in various neur... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2015 | Irregular spiking of pyramidal neurons organizes as scale-invariant neuronal avalanches in the awake state |
Primary cilia are vital signaling organelles that extend from most types of cells , including neurons and glia . These structures are essential for development of many tissues and organs; however , their function in adult tissues , particularly neurons in the brain , remains largely unknown . Tau tubulin kinase 2 ( TTB... | Many mammalian cells have a single hair-like structure , known as the primary cilium that projects away from the surface of the cell . This small projection from the membrane regulates many signaling pathways , particularly during embryonic development . However , most of the neurons in the adult brain also have primar... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2020 | TTBK2 and primary cilia are essential for the connectivity and survival of cerebellar Purkinje neurons |
Evaluation of sepsis-induced immunoparalysis has highlighted how decreased lymphocyte number/function contribute to worsened infection/cancer . Yet , an interesting contrast exists with autoimmune disease development , wherein diminishing pathogenic effectors may benefit the post-septic host . Within this framework , t... | Sepsis is a life-threatening condition that can happen when the immune system overreacts to an infection and begins to damage tissues and organs in the body . It causes an extreme immune reaction called a cytokine storm , where the body releases uncontrolled levels of cytokines , proteins that are involved in coordinat... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"immunology",
"and",
"inflammation"
] | 2020 | Sepsis impedes EAE disease development and diminishes autoantigen-specific naive CD4 T cells |
Colorectal cancer ( CRC ) organoids can be derived from almost all CRC patients and therefore capture the genetic diversity of this disease . We assembled a panel of CRC organoids carrying either wild-type or mutant RAS , as well as normal organoids and tumor organoids with a CRISPR-introduced oncogenic KRAS mutation .... | Recent technical advances mean that miniature replicas of many tissues can be grown in the laboratory . These so-called organoids provide scientists with model systems that are not as limited as simple , two-dimensional sheets of cells growing in a petri dish , and less labor and resource intensive than studies using l... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cancer",
"biology"
] | 2016 | Targeting mutant RAS in patient-derived colorectal cancer organoids by combinatorial drug screening |
Adaptive immunity vitally depends on major histocompatibility complex class I ( MHC I ) molecules loaded with peptides . Selective loading of peptides onto MHC I , referred to as peptide editing , is catalyzed by tapasin and the tapasin-related TAPBPR . An important catalytic role has been ascribed to a structural feat... | Cells in the body keep the immune system informed about their health by showing it fragments of the proteins they have been making . They display these fragments , called peptides , on MHC molecules for passing immune cells to inspect . That way , if a cell becomes infected and starts to make virus proteins , or if it ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"immunology",
"and",
"inflammation"
] | 2020 | A loop structure allows TAPBPR to exert its dual function as MHC I chaperone and peptide editor |
The hologenome concept proposes that microbes and their host organism are an independent unit of selection . Motivated by this concept , we hypothesized that thermal acclimation in poikilothermic organisms , owing to their inability to maintain their body temperature , is connected to their microbiome composition . To ... | Animals and plants host diverse microbial communities that are vital for their survival . In fact , the host organisms and their associated ‘microbiome’ are so closely linked that they are often described as a single entity: the holobiont unit . This suggests that when the host adapts to cope with stressful conditions ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | Host genetic selection for cold tolerance shapes microbiome composition and modulates its response to temperature |
The spindle- and kinetochore-associated ( Ska ) complex is essential for normal anaphase onset in mitosis . The C-terminal domain ( CTD ) of Ska1 binds microtubules and was proposed to facilitate kinetochore movement on depolymerizing spindle microtubules . Here , we show that Ska complex recruits protein phosphatase 1... | When one cell divides into two daughter cells it is critical that both new cells inherit an entire copy of the genetic material . This process is called mitosis , and it involves the duplicated chromosomes lining up in the middle of the cell before being pulled apart into the two newly forming cells . Many different pr... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"cell",
"biology"
] | 2016 | The human SKA complex drives the metaphase-anaphase cell cycle transition by recruiting protein phosphatase 1 to kinetochores |
Cyclic G/AMP synthase ( cGAS ) initiates type-1 interferon responses against cytosolic double-stranded ( ds ) DNA , which range from antiviral gene expression to apoptosis . The mechanism by which cGAS shapes this diverse signaling landscape remains poorly defined . We find that substrate-binding and dsDNA length-depen... | The human immune system protects the body from various threats such as damaged cells or invading microbes . Many of these threats can move molecules of DNA , which are usually only found within a central compartment in the cell known as the nucleus , to the surrounding area , the cytoplasm . An enzyme called cGAS searc... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"immunology",
"and",
"inflammation"
] | 2018 | The allosteric activation of cGAS underpins its dynamic signaling landscape |
Multidimensional landscapes of regulatory genes in neuronal phenotypes at whole-brain levels in the vertebrate remain elusive . We generated single-cell transcriptomes of ~67 , 000 region- and neurotransmitter/neuromodulator-identifiable cells from larval zebrafish brains . Hierarchical clustering based on effector gen... | The brain harbors an astounding diversity of interconnected cells . Each cell contains the same basic set of genetic instructions , but only a fraction of the genome is used in each cell to assemble proteins . This selective gene expression gives rise to each cell’s characteristic properties , such as their shape and l... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"tools",
"and",
"resources",
"neuroscience"
] | 2021 | The landscape of regulatory genes in brain-wide neuronal phenotypes of a vertebrate brain |
Locomotion of tetrapods on land adapted to different environments and needs resulting in a variety of different gait styles . However , comparative analyses reveal common principles of limb movement control . Here , we report that a kinematic synergy involving the planar covariation of limb segment motion holds in 54 d... | Animals have evolved very different body shapes and styles of movement that are adapted to their needs in the habitats they live in . For example , mice , lions and many other animals use four limbs to walk , while humans and birds only use two limbs . The styles animals use to walk also differ in terms of how long eac... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2018 | A kinematic synergy for terrestrial locomotion shared by mammals and birds |
The neuronal DNA-/RNA-binding protein Pur-alpha is a transcription regulator and core factor for mRNA localization . Pur-alpha-deficient mice die after birth with pleiotropic neuronal defects . Here , we report the crystal structure of the DNA-/RNA-binding domain of Pur-alpha in complex with ssDNA . It reveals base-spe... | Some proteins perform several different tasks inside cells . This is the case for a protein called Pur-alpha , which is essential for neurons to work correctly . For example , Pur-alpha can bind to DNA to regulate gene activity . It also binds to RNA molecules , which are copies of a gene , and helps to distribute them... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2016 | Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha |
The mTOR complex 1 ( mTORC1 ) and endoplasmic reticulum ( ER ) stress pathways are critical regulators of intestinal inflammation and colon cancer growth . Sestrins are stress-inducible proteins , which suppress both mTORC1 and ER stress; however , the role of Sestrins in colon physiology and tumorigenesis has been elu... | An organ that is inflamed has an increased risk of developing cancer . Inflammation can be elicited in various ways; and intestinal inflammation and colon cancer development are often associated with a protein complex – called mTORC1 – being overactive in the tissue . This protein complex has been studied in other cont... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"cancer",
"biology"
] | 2016 | Tumor suppressive role of sestrin2 during colitis and colon carcinogenesis |
C4 photosynthesis represents a most remarkable case of convergent evolution of a complex trait , which includes the reprogramming of the expression patterns of thousands of genes . Anatomical , physiological , and phylogenetic and analyses as well as computational modeling indicate that the establishment of a photoresp... | Environmental pressures sometimes cause different organisms to independently evolve the same traits . A dramatic example of this phenomenon , which is called convergent evolution , can be seen in the modes used by plants to convert carbon dioxide from the air into starch during photosynthesis . Early plants existed in ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology",
"evolutionary",
"biology"
] | 2014 | The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria |
Protein output from synonymous codons is thought to be equivalent if appropriate tRNAs are sufficiently abundant . Here we show that mRNAs encoding iterated lysine codons , AAA or AAG , differentially impact protein synthesis: insertion of iterated AAA codons into an ORF diminishes protein expression more than insertio... | Genes provide the instructions to assemble proteins from smaller molecules called amino acids . When a gene is ‘switched on’ , the DNA that makes up the gene is copied into messenger ribonucleic acid ( or mRNA ) molecules , composed of building blocks called nucleotides . There are four types of nucleotides in mRNA mol... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2015 | Ribosomes slide on lysine-encoding homopolymeric A stretches |
Linear Ubiquitin chain Assembly Complex ( LUBAC ) is an E3 ligase complex that generates linear ubiquitin chains and is important for tumour necrosis factor ( TNF ) signaling activation . Mice lacking Sharpin , a critical subunit of LUBAC , spontaneously develop inflammatory lesions in the skin and other organs . Here ... | In response to an injury or an infection , areas of the body can become inflamed as the immune system attempts to repair the damage and/or destroy any microbes or toxins that have entered the body . At the level of individual cells inflammation can involve cells being programmed to die in one of two ways: apoptosis and... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"immunology",
"and",
"inflammation"
] | 2014 | Sharpin prevents skin inflammation by inhibiting TNFR1-induced keratinocyte apoptosis |
Synaptic membrane-remodeling events such as endocytosis require force-generating actin assembly . The endocytic machinery that regulates these actin and membrane dynamics localizes at high concentrations to large areas of the presynaptic membrane , but actin assembly and productive endocytosis are far more restricted i... | Neurons constantly talk to each other by sending chemical signals across the tiny gap , or ‘synapse’ , that separates two cells . While inside the emitting cell , these molecules are safely packaged into small , membrane-bound vessels . Upon the right signal , the vesicles fuse with the external membrane of the neuron ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2021 | An autoinhibitory clamp of actin assembly constrains and directs synaptic endocytosis |
T cell self-tolerance is thought to involve peripheral tolerance and negative selection , involving apoptosis of autoreactive thymocytes . However , evidence supporting an essential role for negative selection is limited . Loss of Bim , a Bcl-2 BH3-only protein essential for thymocyte apoptosis , rarely results in auto... | Our immune system protects us from disease by recognizing and mounting a defence against harmful pathogens that enter our bodies . T cells , a type of white blood cell , play a key role in this process . Each T cell has a unique protein called a T cell receptor on its surface that is able to recognize particular pieces... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"immunology",
"and",
"inflammation"
] | 2014 | T cell-specific inhibition of multiple apoptotic pathways blocks negative selection and causes autoimmunity |
One manifestation of individualization is a progressively differential response of individuals to the non-shared components of the same environment . Individualization has practical implications in the clinical setting , where subtle differences between patients are often decisive for the success of an intervention , y... | Even identical twins who share genetics and the same environment develop individual traits . But how individuality emerges and the biological mechanisms behind it are not clear . It is hard to study people for a long time , so scientists turn to animal studies to answer such questions . One way to study the respective ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Selective increases in inter-individual variability in response to environmental enrichment in female mice |
With experience we become accustomed to the types of environments that we normally encounter as we navigate in the world . But how does this fundamental knowledge develop in the first place and what brain regions are involved ? To examine de novo environmental learning , we created an ‘alien’ virtual reality world popu... | Throughout our lives , we encounter novel environments that we must learn to find our way around , from a new office to a new city . Studies of brain activity in humans and rodents have revealed that many brain regions are involved in navigation , most notably the hippocampus . However , these experiments have typicall... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2015 | A central role for the retrosplenial cortex in de novo environmental learning |
Neurotrophin-3 ( Ntf3 ) and brain derived neurotrophic factor ( Bdnf ) are critical for sensory neuron survival and establishment of neuronal projections to sensory epithelia in the embryonic inner ear , but their postnatal functions remain poorly understood . Using cell-specific inducible gene recombination in mice we... | Noise-induced hearing loss is common , and can result from prolonged exposure to moderate levels of noise that are not perceived as painful or even unpleasant . Some hearing loss can be attributed to the death of hair cells in a part of the inner ear called the cochlea . When sound waves hit the cochlea , they cause th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Neurotrophin-3 regulates ribbon synapse density in the cochlea and induces synapse regeneration after acoustic trauma |
The Hedgehog ( Hh ) signal is transduced across the membrane by the heptahelical protein Smoothened ( Smo ) , a developmental regulator , oncoprotein and drug target in oncology . We present the 2 . 3 Å crystal structure of the extracellular cysteine rich domain ( CRD ) of vertebrate Smo and show that it binds to oxyst... | Just over 30 years ago , researchers identified a new signaling molecule with an important role in the development of fruit flies . Embryos lacking this molecule were thought to resemble a hedgehog , eventually leading to this cell–cell communication system being designated the “Hedgehog” pathway . This pathway has sub... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2013 | Structure and function of the Smoothened extracellular domain in vertebrate Hedgehog signaling |
Primaquine is the only drug available to prevent relapse in vivax malaria . The main adverse effect of primaquine is erythrocyte age and dose-dependent acute haemolytic anaemia in individuals with glucose-6-phosphate dehydrogenase deficiency ( G6PDd ) . As testing for G6PDd is often unavailable , this limits the use of... | Malaria is the most important parasitic disease that affects humans . Over half of the malaria cases in Asia and South America are caused by a species of malaria parasite called Plasmodium vivax ( known as vivax malaria ) . This form of malaria results in repeated illness because dormant parasites in the liver wake at ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health",
"computational",
"and",
"systems",
"biology"
] | 2017 | Modelling primaquine-induced haemolysis in G6PD deficiency |
Transcription is a highly stochastic process . To infer transcription kinetics for a gene-of-interest , researchers commonly compare the distribution of mRNA copy-number to the prediction of a theoretical model . However , the reliability of this procedure is limited because the measured mRNA numbers represent integrat... | Scientific investigation requires researchers to use experimental observations to understand the biological process that resulted in these observations . One example is a cellular process called transcription , where the DNA of a gene is copied many times to make molecules of messenger RNA ( mRNA ) , which are later us... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"short",
"report",
"computational",
"and",
"systems",
"biology"
] | 2016 | Single-cell analysis of transcription kinetics across the cell cycle |
Lethal mutagenesis has emerged as a novel potential therapeutic approach to treat viral infections . Several studies have demonstrated that increases in the high mutation rates inherent to RNA viruses lead to viral extinction in cell culture , but evidence during infections in vivo is limited . In this study , we show ... | Viruses can infect , take control of and replicate themselves inside the living cells of other organisms . Some viral diseases can be treated with antiviral drugs , which stop viral infections either by making it more difficult for viruses to enter cells or by preventing the virus replicating once inside . As antiviral... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | Favipiravir elicits antiviral mutagenesis during virus replication in vivo |
Nonsense-mediated mRNA decay ( NMD ) is a translation-dependent RNA quality-control pathway targeting transcripts such as messenger RNAs harboring premature stop-codons or short upstream open reading frame ( uORFs ) . Our transcription start sites ( TSSs ) analysis of Saccharomyces cerevisiae cells deficient for RNA de... | Eukaryotes such as animals , plants and fungi store their DNA within the nucleus of each of their cells . Genes within this DNA contain the instructions needed to make molecules of RNA; some of which can leave the nucleus and be decoded to build proteins . However , not all of the DNA that is copied into RNA actually c... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"genetics",
"and",
"genomics"
] | 2015 | Quality control of transcription start site selection by nonsense-mediated-mRNA decay |
The spindle position checkpoint ( SPOC ) is a spindle pole body ( SPB , equivalent of mammalian centrosome ) associated surveillance mechanism that halts mitotic exit upon spindle mis-orientation . Here , we monitored the interaction between SPB proteins and the SPOC component Bfa1 by FRET microscopy . We show that Bfa... | A cell must duplicate its genetic material and then separate the two copies before it divides . This process is carefully controlled so that each new cell receives an identical set of chromosomes after cell division . In budding yeast , new daughter cells grow as a bud on the side a larger mother cell and are eventuall... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2016 | A FRET-based study reveals site-specific regulation of spindle position checkpoint proteins at yeast centrosomes |
Hydroxychloroquine and chloroquine are used extensively in malaria and rheumatological conditions , and now in COVID-19 prevention and treatment . Although generally safe they are potentially lethal in overdose . In-vitro data suggest that high concentrations and thus high doses are needed for COVID-19 infections , but... | Hydroxychloroquine and chloroquine are closely-related drugs used for the treatment of malaria and rheumatological conditions , such as lupus . Laboratory tests have indicated that these drugs could also be used against the virus that causes COVID-19 . Given the urgent need , these drugs have been fast-tracked into lar... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"medicine"
] | 2020 | Concentration-dependent mortality of chloroquine in overdose |
The Ciona notochord displays planar cell polarity ( PCP ) , with anterior localization of Prickle ( Pk ) and Strabismus ( Stbm ) . We report that a myosin is polarized anteriorly in these cells and strongly colocalizes with Stbm . Disruption of the actin/myosin machinery with cytochalasin or blebbistatin disrupts polar... | Animal cells that form flat layers of a tissue , such as the skin or the lining of internal cavities , are often orientated in the same direction . The same is true for structures such as hairs or feathers , which are attached to the skin . This phenomenon is known as ‘planar cell polarity’ ( or ‘PCP’ for short ) . Man... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2015 | Reciprocal and dynamic polarization of planar cell polarity core components and myosin |
The ventricular-subventricular zone ( V-SVZ ) , on the walls of the lateral ventricles , harbors the largest neurogenic niche in the adult mouse brain . Previous work has shown that neural stem/progenitor cells ( NSPCs ) in different locations within the V-SVZ produce different subtypes of new neurons for the olfactory... | Nerve cells , or neurons , are the central building blocks of brain circuits . Their damage , death or loss of function leads to cognitive decline . Neural stem/progenitor cells ( NSPCs ) first appear during embryo development , generating most of the neurons found in the nervous system . However , the adult brain reta... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"neuroscience"
] | 2021 | Single-cell analysis of the ventricular-subventricular zone reveals signatures of dorsal and ventral adult neurogenesis |
Cancer develops and progresses often by inactivating p53 . Here , we unveil nerve growth factor receptor ( NGFR , p75NTR or CD271 ) as a novel p53 inactivator . p53 activates NGFR transcription , whereas NGFR inactivates p53 by promoting its MDM2-mediated ubiquitin-dependent proteolysis and by directly binding to its c... | Cancer often develops as a result of alterations to “tumor suppressor” genes within cells . This results in the cells growing and dividing too much , which causes a tumor to form . One of the most important tumor suppressor genes produces a protein called p53 , which is lost or mutated in roughly half of all human canc... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"cancer",
"biology"
] | 2016 | Nerve growth factor receptor negates the tumor suppressor p53 as a feedback regulator |
The HIV-1 protein Rev controls a critical step in viral replication by mediating the nuclear export of unspliced and singly-spliced viral mRNAs . Multiple Rev subunits assemble on the Rev Response Element ( RRE ) , a structured region present in these RNAs , and direct their export through the Crm1 pathway . Rev-RRE as... | To be able to multiply , viruses have to first infect a host cell and then hijack the host's molecular machinery to make viral proteins . One stage of this process takes place in the nucleus of the host cell and involves the viral DNA being transcribed to make RNA molecules . These RNA molecules must then be exported f... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev–Rev response element complex |
Replicate populations of natural and experimental organisms often show evidence of parallel genetic evolution , but the causes are unclear . The wrinkly spreader morph of Pseudomonas fluorescens arises repeatedly during experimental evolution . The mutational causes reside exclusively within three pathways . By elimina... | Different living things often develop similar strategies to adapt to the environments in which they live . Sometimes two species that share a common ancestor independently evolve the same trait by changing the exact same genes . This is called ‘parallel evolution’ , and it has led some scientists to ask: are there cert... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2015 | Experimental evolution reveals hidden diversity in evolutionary pathways |
The proteostasis network has evolved to support protein folding under normal conditions and to expand this capacity in response to proteotoxic stresses . Nevertheless , many pathogenic states are associated with protein misfolding , revealing in vivo limitations on quality control mechanisms . One contributor to these ... | Proteins must fold into specific shapes to work inside cells , and the misfolding of proteins is associated with a growing number of diseases . For example , prions are misfolded proteins that form insoluble aggregates called amyloids . These aggregates are not easily destroyed and can cause other nearby proteins to mi... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2014 | Spatial quality control bypasses cell-based limitations on proteostasis to promote prion curing |
Neurons rely on translation of synaptic mRNAs in order to generate activity-dependent changes in plasticity . Here , we develop a strategy combining compartment-specific crosslinking immunoprecipitation ( CLIP ) and translating ribosome affinity purification ( TRAP ) in conditionally tagged mice to precisely define the... | The brain has over 100 billion neurons that together form vast networks to relay electrical signals . A neuron receives electrical signals from other neurons via branch-like structures known as dendrites . The signals then travel into the cell body of the neuron . If their sum reaches a threshold , they fire a new sign... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience",
"genetics",
"and",
"genomics"
] | 2021 | FMRP regulates mRNAs encoding distinct functions in the cell body and dendrites of CA1 pyramidal neurons |
Due to the uniform cyto-architecture of the cerebellar cortex , its overall physiological characteristics have traditionally been considered to be homogeneous . In this study , we show in awake mice at rest that spiking activity of Purkinje cells , the sole output cells of the cerebellar cortex , differs between cerebe... | The cerebellum , located at the back of the brain underneath the cerebral hemispheres , is best known for its role in the control of movement . Despite its small size , the cerebellum contains more than half of the brain's neurons . These are organized in a repeating pattern in which cells called Purkinje cells receive... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Cerebellar modules operate at different frequencies |
A large group of bacterial virulence autotransporters including AIDA-I from diffusely adhering E . coli ( DAEC ) and TibA from enterotoxigenic E . coli ( ETEC ) require hyperglycosylation for functioning . Here we demonstrate that TibC from ETEC harbors a heptosyltransferase activity on TibA and AIDA-I , defining a lar... | Bacteria release proteins known as virulence factors to help them infect host cells . Many bacteria are surrounded by two membranes , so virulence factors must be able to pass through both of these membranes . Autotransporters are a group of virulence factors that pass through the inner membrane and anchor themselves i... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | A structural mechanism for bacterial autotransporter glycosylation by a dodecameric heptosyltransferase family |
The synaptonemal complex ( SC ) is an ultrastructurally conserved proteinaceous structure that holds homologous chromosomes together and is required for the stabilization of pairing interactions and the completion of crossover ( CO ) formation between homologs during meiosis I . Here , we identify a novel role for a ce... | The majority of DNA in animal cells is stored in structures called chromosomes . Most cells contain two sets of chromosomes , one inherited from the mother and one from the father . Sperm and egg cells , however , contain only a single set of chromosomes . A specialized type of cell division called meiosis generates th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"cell",
"biology"
] | 2017 | Polo-like kinase-dependent phosphorylation of the synaptonemal complex protein SYP-4 regulates double-strand break formation through a negative feedback loop. |
The TAM receptor tyrosine kinases Tyro3 , Axl , and Mer regulate key features of cellular physiology , yet the differential activities of the TAM ligands Gas6 and Protein S are poorly understood . We have used biochemical and genetic analyses to delineate the rules for TAM receptor–ligand engagement and find that the T... | Cells send out and receive signals to communicate with other cells . Detecting these signals is largely carried out by proteins called receptors that span the cell surface membrane . These proteins typically have extracellular domains outside of the cell that can bind to specific signaling molecules and an intracellula... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"immunology",
"and",
"inflammation"
] | 2014 | Differential TAM receptor–ligand–phospholipid interactions delimit differential TAM bioactivities |
The loss of previously adaptive traits is typically linked to relaxation in selection , yet the molecular steps leading to such repeated losses are rarely known . Molecular studies of loss have tended to focus on gene sequences alone , but overlooking other aspects of protein expression might underestimate phenotypic d... | Bats are famous for using their hearing to explore their environments , yet fewer people are aware that these flying mammals have both good night and daylight vision . Some bats can even see in color thanks to two light-sensitive proteins at the back of their eyes: S-opsin which detects blue and ultraviolet light and L... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2018 | Multifactorial processes underlie parallel opsin loss in neotropical bats |
Cells can , in principle , control their size by growing to a specified size before commencing cell division . How any cell actually senses its own size remains poorly understood . The fission yeast Schizosaccharomyces pombe are rod-shaped cells that grow to ∼14 µm in length before entering mitosis . In this study , we... | Although different types of cells come in a variety of shapes and sizes , most cells are able to maintain a fairly consistent size and shape as they grow and divide . For example , the rod-shaped cells of the fission yeast S . pombe grow to be 14 microns long before dividing in the middle to form two new cells . This p... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2014 | Cortical regulation of cell size by a sizer cdr2p |
Plant meristems carry pools of continuously active stem cells , whose activity is controlled by developmental and environmental signals . After stem cell division , daughter cells that exit the stem cell domain acquire transit amplifying cell identity before they are incorporated into organs and differentiate . In this... | Unlike animals , plants continuously generate new organs that make up their body . At the core of this amazing capacity lie tissues called meristems , which are found at the growing tips of all plants . Meristems contain dividing stem cells . The daughters of these stem cells pass through nearby regions called transiti... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology",
"developmental",
"biology"
] | 2017 | Control of plant cell fate transitions by transcriptional and hormonal signals |
Spontaneous slow oscillation-associated slow wave activity represents an internally generated state which is characterized by alternations of network quiescence and stereotypical episodes of neuronal activity - slow wave events . However , it remains unclear which macroscopic signal is related to these active periods o... | When a person is in a deep non-dreaming sleep , neurons in their brain alternate slowly between periods of silence and periods of activity . This gives rise to low-frequency brain rhythms called slow waves , which are thought to help stabilize memories . Slow wave activity can be detected on multiple scales , from the ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | Cortex-wide BOLD fMRI activity reflects locally-recorded slow oscillation-associated calcium waves |
Laetoli is a well-known palaeontological locality in northern Tanzania whose outstanding record includes the earliest hominin footprints in the world ( 3 . 66 million years old ) , discovered in 1978 at Site G and attributed to Australopithecus afarensis . Here , we report hominin tracks unearthed in the new Site S at ... | Fossil footprints are extremely useful tools in the palaeontological record . Their physical features can help to identify their makers , but can also be used to infer biological information . How did the track-maker move ? How large was it ? How fast was it going ? Footprints of hominins ( namely the group to which hu... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2016 | New footprints from Laetoli (Tanzania) provide evidence for marked body size variation in early hominins |
Arbuscular mycorrhiza ( AM ) symbioses contribute to global carbon cycles as plant hosts divert up to 20% of photosynthate to the obligate biotrophic fungi . Previous studies suggested carbohydrates as the only form of carbon transferred to the fungi . However , de novo fatty acid ( FA ) synthesis has not been observed... | Most land plants are able to form partnerships with certain fungi – known as arbuscular mycorrhiza fungi – that live in the soil . These fungi supply the plant with mineral nutrients , especially phosphate and nitrogen , in return for receiving carbon-based food from the plant . To exchange nutrients , the fungi grow i... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2017 | Lipid transfer from plants to arbuscular mycorrhiza fungi |
Morphogenesis and physiology of tissues and organs requires planar cell polarity ( PCP ) systems that orient and coordinate cells and their behaviors , but the relationship between PCP systems has been controversial . We have characterized how the Frizzled and Dachsous-Fat PCP systems are connected through the Spiny-le... | Animals have many asymmetric organs . Wings , for example , are aerodynamically shaped and have a clear front , back , top and bottom , and even additions to these organs , such as feathers on the wing , often need to be oriented in a specific manner . This kind of orientation arises when cells divide and grow asymmetr... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2015 | Coordination of planar cell polarity pathways through Spiny-legs |
In response to proteasome dysfunction , mammalian cells upregulate proteasome gene expression by activating Nrf1 . Nrf1 is an endoplasmic reticulum-resident transcription factor that is continually retrotranslocated and degraded by the proteasome . Upon proteasome inhibition , Nrf1 escapes degradation and is cleaved to... | The proteasome is a machine that destroys unnecessary or damaged proteins inside cells . This role of the proteasome is essential for cell survival , and so when the proteasome is inhibited , cells produce new proteasomes to compensate . Upon proteasome inhibition , a protein called Nrf1 is activated and executes this ... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"short",
"report"
] | 2016 | The aspartyl protease DDI2 activates Nrf1 to compensate for proteasome dysfunction |
Intelligence and education are predictive of better physical and mental health , socioeconomic position ( SEP ) , and longevity . However , these associations are insufficient to prove that intelligence and/or education cause these outcomes . Intelligence and education are phenotypically and genetically correlated , wh... | Highly educated people tend to be healthier and have higher incomes than those with less schooling . This might be because education helps people adopt a healthier lifestyle , as well as qualifying them for better-paid jobs . But , on average , highly educated people also score more highly on cognitive tests . This may... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health"
] | 2019 | Multivariable two-sample Mendelian randomization estimates of the effects of intelligence and education on health |
Emerging evidence suggests that dopamine may modulate learning and memory with important implications for understanding the neurobiology of memory and future therapeutic targeting . An influential hypothesis posits that dopamine biases reinforcement learning . More recent data also suggest an influence during both cons... | Brain cells release a naturally occurring chemical called dopamine . The release of this chemical affects how people respond to their ever-changing environment , including how they learn from rewards and punishments . Parkinson’s disease is a condition where the brain cells that make dopamine start to die , and so the ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | Effects of dopamine on reinforcement learning and consolidation in Parkinson’s disease |
Axis elongation is a conserved process in which the head-to-tail or anterior-posterior ( AP ) axis of an embryo extends . In Drosophila , cellular rearrangements drive axis elongation . Cells exchange neighbours by converging into transient multicellular vertices which resolve through the assembly of new cell interface... | Tissues and organs form certain shapes that allow them to perform particular roles in the body . For example , the lungs form sacs that accommodate large volumes of air , while the skin forms a sheet to cover and protect our internal organs . One way to shape a tissue is for cells to swap places with their neighbours .... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2016 | Local mechanical forces promote polarized junctional assembly and axis elongation in Drosophila |
To understand how long-range patterning gradients are interpreted at the cellular level , we investigate how a gradient of expression of the Four-jointed kinase specifies planar polarised distributions of the cadherins Fat and Dachsous in the Drosophila wing . We use computational modelling to test different scenarios ... | Epithelial cells form sheets that line the body surfaces and internal cavities of animals—such as the skin and the lining of the gut . Certain structures on the surface of epithelial cell sheets—for example scales , hair , and feathers—are often all orientated in a particular direction . Epithelial cells with structure... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2015 | Cellular interpretation of the long-range gradient of Four-jointed activity in the Drosophila wing |
The CRISPR system for prokaryotic adaptive immunity provides RNA-mediated protection from viruses and mobile genetic elements . When viral RNA transcripts are detected , type III systems adopt an activated state that licenses DNA interference and synthesis of cyclic oligoadenylate ( cOA ) . cOA activates nucleases and ... | The gene editing tool often known simply as CRISPR has become well known in recent years . Its potential applications are wide ranging , including uses in research , healthcare and agriculture . Yet , the CRISPR system originated in microbes where it helps to protect them from viral infections . Viruses infect by inser... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2018 | Control of cyclic oligoadenylate synthesis in a type III CRISPR system |
Platelets are anucleate cells in blood whose principal function is to stop bleeding by forming aggregates for hemostatic reactions . In addition to their participation in physiological hemostasis , platelet aggregates are also involved in pathological thrombosis and play an important role in inflammation , atherosclero... | Platelets are small cells in the blood that primarily help stop bleeding after an injury by sticking together with other blood cells to form a clot that seals the broken blood vessel . Blood clots , however , can sometimes cause harm . For example , if a clot blocks the blood flow to the heart or the brain , it can res... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"cell",
"biology"
] | 2020 | Intelligent classification of platelet aggregates by agonist type |
Environmental stress during early development can impact adult phenotypes via programmed changes in gene expression . C . elegans larvae respond to environmental stress by entering the stress-resistant dauer diapause pathway and resume development once conditions improve ( postdauers ) . Here we show that the osm-9 TRP... | Increasing evidence suggests that experiencing stressful environments early on in life can have profound effects on the health and behavior of adults . For example , stressful conditions in the womb have been linked to adult depression and metabolic disorders . These effects are thought to be the result of changes in t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"neuroscience"
] | 2016 | Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways |
Neural progenitors undergo temporal patterning to generate diverse neurons in a chronological order . This process is well-studied in the developing Drosophila brain and conserved in mammals . During larval stages , intermediate neural progenitors ( INPs ) serially express Dichaete ( D ) , grainyhead ( Grh ) and eyeles... | The brain consists of billions of neurons that come in a range of shapes and sizes , with different types of neurons specialized to perform different tasks . Despite their diversity , all of these neurons originate from a single population known as neural stem cells . As the brain develops , each neural stem cell divid... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"neuroscience"
] | 2019 | The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop |
The microtubule cytoskeleton is critical for muscle cell differentiation and undergoes reorganisation into an array of paraxial microtubules , which serves as template for contractile sarcomere formation . In this study , we identify a previously uncharacterised isoform of microtubule-associated protein MAP4 , oMAP4 , ... | Skeletal muscles—which enable animals to move—are made up of large elongated muscle cells that span the entire length of the muscle . These cells contain stacks of structures called sarcomeres that enable the cells to contract and generate the force required for movement . Cells called myoblasts elongate and fuse toget... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2015 | A novel isoform of MAP4 organises the paraxial microtubule array required for muscle cell differentiation |
Eukaryotic cells rapidly reduce protein synthesis in response to various stress conditions . This can be achieved by the phosphorylation-mediated inactivation of a key translation initiation factor , eukaryotic initiation factor 2 ( eIF2 ) . However , the persistent translation of certain mRNAs is required for deployme... | Proteins carry out essential tasks for living cells and genes contain the instructions to make proteins within their DNA . These instructions are copied to make a molecule of mRNA , and a molecular machine known as a ribosome then reads and translates the mRNA to build the protein . The first step in the translation pr... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2015 | Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression |
Developed areas are thought to have low species diversity , low animal abundance , few native predators , and thus low resilience and ecological function . Working with citizen scientist volunteers to survey mammals at 1427 sites across two development gradients ( wild-rural-exurban-suburban-urban ) and four plot types... | Humans transform natural ecosystems worldwide into towns and cities , replacing natural habitat with human-built surfaces . This loss of habitat and increase in human activity make suburban areas difficult for some species to survive in , raising concerns that developed areas become ecologically unbalanced as they lose... | [
"Abstract",
"Introduction",
"Materials",
"and",
"methods",
"Results",
"and",
"discussion"
] | [
"ecology",
"short",
"report"
] | 2018 | Mammal communities are larger and more diverse in moderately developed areas |
The only true living endothermic vertebrates are birds and mammals , which produce and regulate their internal temperature quite independently from their surroundings . For mammal ancestors , anatomical clues suggest that endothermy originated during the Permian or Triassic . Here we investigate the origin of mammalian... | School textbooks often refer to “cold-blooded” and “warm-blooded” animals , but these terms are misleading . Rather than being cold , animals like reptiles have body temperatures that are mostly determined by their external environment and can actually achieve high body temperatures , for example , by basking in the su... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Material",
"and",
"methods"
] | [
"ecology"
] | 2017 | Oxygen isotopes suggest elevated thermometabolism within multiple Permo-Triassic therapsid clades |
Management of salivary gland hypofunction caused by irradiation ( IR ) therapy for head and neck cancer remains lack of effective treatments . Salivary glands , especially the parotid gland , actively uptake dietary nitrate and secrete it into saliva . Here , we investigated the effect of dietary nitrate on the prevent... | Head and neck cancers are commonly treated using radiotherapy , where a beam of high-energy radiation is targeted at the tumour . This often severely damages the surrounding salivary glands , leading to chronic dry mouth and impairing a patient’s sense of taste , nutrient intake , speech and immune system . Despite thi... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2021 | Dietary nitrate supplementation prevents radiotherapy-induced xerostomia |
Both proteins and RNAs can misfold into non-functional conformations . Protein chaperones promote native folding of nascent polypeptides and refolding of misfolded species , thereby buffering mutations that compromise protein structure and function . Here , we show that RNA chaperones can also act as mutation buffers t... | Stretches of DNA known as genes contain the instructions to make the proteins and RNA molecules that are essential for life . The DNA sequence of the gene is first copied to make a strand of RNA , which may subsequently be ‘translated’ to make a protein . To carry out their tasks , proteins and many RNA molecules must ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2015 | RNA chaperones buffer deleterious mutations in E. coli |
Antibody class switching is a feature of the adaptive immune system which enables diversification of the effector properties of antibodies . Even though class switching is essential for mounting a protective response to pathogens , the in vivo patterns and lineage characteristics of antibody class switching have remain... | The human immune system comprises cells and processes that protect the body against infection and disease . B cells are immune cells that once activated produce antibodies , or proteins that help identify and neutralize infectious microbes and diseased host cells . Antibodies fall into one of ten different classes , an... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"immunology",
"and",
"inflammation"
] | 2016 | Lineage tracing of human B cells reveals the in vivo landscape of human antibody class switching |
How genetic changes are linked to morphological novelties and developmental constraints remains elusive . Here , we investigate genetic apparatuses that distinguish fish fins from tetrapod limbs by analyzing transcriptomes and open-chromatin regions ( OCRs ) . Specifically , we compared mouse forelimb buds with the pec... | Animals come in all shapes and sizes . This diversity arose through genetic mutations during evolution , but it is unclear exactly how these variations led to the formation of new shapes . There is increasing evidence to suggest that not all shapes are possible and that variability between animals is limited by a pheno... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"evolutionary",
"biology"
] | 2021 | Developmental hourglass and heterochronic shifts in fin and limb development |
During awake consciousness , the brain intrinsically maintains a dynamical state in which it can coordinate complex responses to sensory input . How the brain reaches this state spontaneously is not known . General anesthesia provides a unique opportunity to examine how the human brain recovers its functional capabilit... | General anesthesia is essential to modern medicine . It allows physicians to temporarily keep people in an unconscious state . When infusions of the anesthetic drug stop , patients gradually recover consciousness and awaken , a process called emergence . Previous studies using recordings of electrical activity in the b... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | A transient cortical state with sleep-like sensory responses precedes emergence from general anesthesia in humans |
Most motile bacteria sense and respond to their environment through a transmembrane chemoreceptor array whose structure and function have been well-studied , but many species also contain an additional cluster of chemoreceptors in their cytoplasm . Although the cytoplasmic cluster is essential for normal chemotaxis in ... | Many bacteria swim through water by rotating tiny hair-like structures called flagella . In E . coli , if all the flagella on the surface of a bacterium rotate in a counterclockwise fashion , then it will swim in a particular direction , but if the flagella all rotate in an clockwise fashion , then the bacterium will s... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | Structure of bacterial cytoplasmic chemoreceptor arrays and implications for chemotactic signaling |
Plexins are cell surface receptors that bind semaphorins and transduce signals for regulating neuronal axon guidance and other processes . Plexin signaling depends on their cytoplasmic GTPase activating protein ( GAP ) domain , which specifically inactivates the Ras homolog Rap through an ill-defined non-canonical cata... | A key question in neurobiology is how the brain becomes wired up . How do axons—the ‘wires’ along which neural signals flow—know in which direction to grow to reach their intended targets ? A family of signalling proteins called semaphorins contribute to this process by acting as stop signals for axons that are heading... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2013 | Structural basis for activation and non-canonical catalysis of the Rap GTPase activating protein domain of plexin |
Internal ribosome entry sites ( IRESs ) are powerful model systems to understand how the translation machinery can be manipulated by structured RNAs and for exploring inherent features of ribosome function . The intergenic region ( IGR ) IRESs from the Dicistroviridae family of viruses are structured RNAs that bind dir... | Many viruses store their genetic information in the form of strands of ribonucleic acid ( RNA ) , which contain building blocks called nucleotides . Once inside an infected cell , the virus hijacks the cellular structures that build proteins ( called ribosomes ) , which forces the cell to start making viral proteins . ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2015 | A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation |
The standard reference Caenorhabditis elegans strain , N2 , has evolved marked behavioral changes in social feeding behavior since its isolation from the wild . We show that the causal , laboratory-derived mutations in two genes , npr-1 and glb-5 , confer large fitness advantages in standard laboratory conditions . Usi... | Why do humans walk on two feet ? And what makes us smarter than our ape ancestors ? The answers to these questions , and countless others about the particular traits of any number of species , is often said to be natural selection – a process where genes that ensure the survival of a species are favored of others . But... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2018 | Changes to social feeding behaviors are not sufficient for fitness gains of the Caenorhabditis elegans N2 reference strain |
Renal medullary carcinoma ( RMC ) is a rare and deadly kidney cancer in patients of African descent with sickle cell trait . We have developed faithful patient-derived RMC models and using whole-genome sequencing , we identified loss-of-function intronic fusion events in one SMARCB1 allele with concurrent loss of the o... | Renal medullary carcinoma ( RMC for short ) is a rare type of kidney cancer that affects teenagers and young adults . These patients are usually of African descent and carry one of the two genetic changes that cause sickle cell anemia . RMC is an aggressive disease without effective treatments and patients survive , on... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cancer",
"biology"
] | 2019 | Renal medullary carcinomas depend upon SMARCB1 loss and are sensitive to proteasome inhibition |
Many organisms in nature have evolved mechanisms to tolerate severe hypoxia or ischemia , including the hibernation-capable Arctic ground squirrel ( AGS ) . Although hypoxic or ischemia tolerance in AGS involves physiological adaptations , little is known about the critical cellular mechanisms underlying intrinsic AGS ... | When animals hibernate , they lower their body temperature and metabolism to conserve the energy they need to withstand cold harsh winters . One such animal is the Arctic ground squirrel , an extreme hibernator that can drop its body temperatures to below 0°C . This hibernation ability means the cells of Arctic ground ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"genetics",
"and",
"genomics"
] | 2020 | Cytoprotection by a naturally occurring variant of ATP5G1 in Arctic ground squirrel neural progenitor cells |
The Dna2 nuclease-helicase maintains genomic integrity by processing DNA double-strand breaks , Okazaki fragments and stalled replication forks . Dna2 requires ssDNA ends , and is dependent on the ssDNA-binding protein Rpa , which controls cleavage polarity . Here we present the 2 . 3 Å structure of intact mouse Dna2 b... | DNA carries the genetic information that is essential for organisms to survive and reproduce . It is made of two strands that twist together to form a double helix . However , these strands can be damaged when the DNA is copied before a cell divides , or by exposure to radiation or hazardous chemicals . To prevent this... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Conclusions",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2015 | Dna2 nuclease-helicase structure, mechanism and regulation by Rpa |
Here , we present a method for in-depth human plasma proteome analysis based on high-resolution isoelectric focusing HiRIEF LC-MS/MS , demonstrating high proteome coverage , reproducibility and the potential for liquid biopsy protein profiling . By integrating genomic sequence information to the MS-based plasma proteom... | Blood cells travel through the blood vessels in a soupy mixture of proteins called plasma . Most of these proteins are plasma-specific , yet small amounts of proteins can leak into the plasma from other body parts and may provide hints about what is going on elsewhere in the body . This could allow doctors to use plasm... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"tools",
"and",
"resources"
] | 2019 | In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta |
Despite the crucial role of bacterial capsules in pathogenesis , it is still unknown if systemic cues such as the cell cycle can control capsule biogenesis . In this study , we show that the capsule of the synchronizable model bacterium Caulobacter crescentus is cell cycle regulated and we unearth a bacterial transglut... | Many bacteria have a tough outer coating known as capsule that protects them from untoward environmental conditions . This capsule also prevents viruses called bacteriophages from invading the bacterial cells , and it shields those bacteria that can infect humans from attack by our immune system . External conditions—s... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | Cell cycle constraints on capsulation and bacteriophage susceptibility |
How cells sense their mechanical environment and transduce forces into biochemical signals is a crucial yet unresolved question in mechanobiology . Platelets use receptor glycoprotein Ib ( GPIb ) , specifically its α subunit ( GPIbα ) , to signal as they tether and translocate on von Willebrand factor ( VWF ) of injure... | Platelets – the blood clotting cells – have the ability to detect , interpret and respond to mechanical forces , such as those generated by the flow of blood . The magnitude and duration of the forces detected by the platelets influences whether they form a blood clot . Understanding how the platelets respond to mechan... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2016 | Cooperative unfolding of distinctive mechanoreceptor domains transduces force into signals |
Transmission reduction is a key component of global efforts to control and eliminate malaria; yet , it is unclear how the density of transmission stages ( gametocytes ) influences infection ( proportion of mosquitoes infected ) . Human to mosquito transmission was assessed using 171 direct mosquito feeding assays condu... | Malaria is one of the world’s most deadly infectious diseases . The most severe form is caused by the parasite Plasmodium falciparum , which can reside within red blood cells and thus evade the human immune system . Plasmodium is transmitted between humans by mosquitoes . When a mosquito takes a blood meal from an indi... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Material",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health"
] | 2013 | Predicting mosquito infection from Plasmodium falciparum gametocyte density and estimating the reservoir of infection |
Skilled performance is characterized by precise and flexible control of movement sequences in space and time . Recent theories suggest that integrated spatio-temporal trajectories are generated by intrinsic dynamics of motor and premotor networks . This contrasts with behavioural advantages that emerge when a trained s... | Once a pianist has learned to play a song , he or she can nearly effortlessly reproduce the sequence of finger movements needed to play the song with a particular rhythm . A skilled pianist can also improvise , pairing the same keystrokes with a different rhythm or playing the same rhythm with a slightly different sequ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Human premotor areas parse sequences into their spatial and temporal features |
The outer membrane ( OM ) of Gram-negative bacteria serves as a selective permeability barrier that allows entry of essential nutrients while excluding toxic compounds , including antibiotics . The OM is asymmetric and contains an outer leaflet of lipopolysaccharides ( LPS ) or lipooligosaccharides ( LOS ) and an inner... | Gram-negative bacteria are a large group of single-celled organisms that share a typical external envelope . This casing is formed of an inner and an outer membrane , which have different structures and properties . The outer membrane lets nutrients penetrate inside the cell , but blocks out other compounds , such as a... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2019 | The Acinetobacter baumannii Mla system and glycerophospholipid transport to the outer membrane |
In order to assess the contribution of a central clock in the hypothalamic suprachiasmatic nucleus ( SCN ) to circadian behavior and the organization of peripheral clocks , we generated forebrain/SCN-specific Bmal1 knockout mice by using floxed Bmal1 and pan-neuronal Cre lines . The forebrain knockout mice showed >90% ... | Jet lag is a common experience when flying long distance . This disorientating phenomenon occurs when our internal ‘body clock’ remains set to the time zone where the plane departed and fails to reset to the new local time . Our internal clock actually consists of a series of clocks—each of which is based upon groups o... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Differential effects of light and feeding on circadian organization of peripheral clocks in a forebrain Bmal1 mutant |
Across many studies , animals with enhanced synaptic plasticity exhibit either enhanced or impaired learning , raising a conceptual puzzle: how enhanced plasticity can yield opposite learning outcomes ? Here , we show that the recent history of experience can determine whether mice with enhanced plasticity exhibit enha... | All animals can learn from their experiences . One of the main ideas for how learning occurs is that it involves changes in the strength of the connections between neurons , known as synapses . The ability of synapses to become stronger or weaker is referred to as synaptic plasticity . High levels of synaptic plasticit... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | A saturation hypothesis to explain both enhanced and impaired learning with enhanced plasticity |
Many bacteria communicate with kin and coordinate group behaviors through a form of cell-cell signaling called acyl-homoserine lactone ( AHL ) quorum sensing ( QS ) . In these systems , a signal synthase produces an AHL to which its paired receptor selectively responds . Selectivity is fundamental to cell signaling . D... | Communication is vital in any community and it is no different for bacteria . Some of the microbes living in bacterial communities are closely related to one another and can help each other survive and grow . They do this by releasing chemical signals that coordinate their behaviors , including those that are damaging ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"microbiology",
"and",
"infectious",
"disease"
] | 2021 | A covariation analysis reveals elements of selectivity in quorum sensing systems |
The precise pattern of motor neuron ( MN ) activation is essential for the execution of motor actions; however , the molecular mechanisms that give rise to specific patterns of MN activity are largely unknown . Phrenic MNs integrate multiple inputs to mediate inspiratory activity during breathing and are constrained to... | In mammals , air is moved in and out of the lungs by a sheet of muscle called the diaphragm . When this muscle contracts air gets drawn into the lungs and as the muscle relaxes this pushes air back out . Movement of the diaphragm is controlled by a group of nerve cells called motor neurons which are part of the phrenic... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"neuroscience"
] | 2020 | Phrenic-specific transcriptional programs shape respiratory motor output |
Reproductive synchrony generally occurs in various group-living animals . However , the underlying mechanisms remain largely unexplored . The migratory locust , Locusta migratoria , a worldwide agricultural pest species , displays synchronous maturation and oviposition when forms huge swarm . The reproductive synchrony... | Since 2019 , a plague of flying insects known as migratory locusts has been causing extensive damage to crops in East Africa . Migratory locusts sometimes live a solitary lifestyle but , if environmental conditions allow , they form large groups containing millions of individuals known as swarms that are responsible fo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"biochemistry",
"and",
"chemical",
"biology"
] | 2022 | Aggregation pheromone 4-vinylanisole promotes the synchrony of sexual maturation in female locusts |
Paired fins are a defining feature of the jawed vertebrate body plan , but their evolutionary origin remains unresolved . Gegenbaur proposed that paired fins evolved as gill arch serial homologues , but this hypothesis is now widely discounted , owing largely to the presumed distinct embryonic origins of these structur... | A common way to evolve new body parts is to copy existing ones and to remodel them . In insects for example , the antennae , mouth parts and legs all follow the same basic body plan , with modifications that adapt them for different uses . In the late 19th century , anatomist Karl Gegenbaur noticed a similar pattern in... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"evolutionary",
"biology"
] | 2020 | Embryonic origin and serial homology of gill arches and paired fins in the skate, Leucoraja erinacea |
Schistosomes infect hundreds of millions of people in the developing world . Transmission of these parasites relies on a stem cell-driven , clonal expansion of larvae inside a molluscan intermediate host . How this novel asexual reproductive strategy relates to current models of stem cell maintenance and germline speci... | Schistosomiasis—a disease caused by parasitic flatworms known as schistosomes—affects more than 200 million people worldwide , mainly in tropical regions , and in public health importance is second only to malaria ( according to the World Health Organization ) . Chronic infection leads to damage to internal organs , an... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"microbiology",
"and",
"infectious",
"disease"
] | 2013 | Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni |
T follicular helper cells ( Tfh ) are critical for the longevity and quality of antibody-mediated protection against infection . Yet few signaling pathways have been identified to be unique solely to Tfh development . ROQUIN is a post-transcriptional repressor of T cells , acting through its ROQ domain to destabilize m... | The immune system protects the body from invading microbes like bacteria and viruses . Upon recognizing the presence of these microbes , cells in the immune system are activated to destroy the foreign threat and clear it from the body . A type of immune cell called T follicular helper cells ( or Tfh for short ) are for... | [
"Abstract",
"Introduction",
"Results",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"immunology",
"and",
"inflammation"
] | 2015 | Attenuation of AMPK signaling by ROQUIN promotes T follicular helper cell formation |
It was recently proposed ( Bushdid et al . , 2014 ) that humans can discriminate between at least a trillion olfactory stimuli . Here we show that this claim is the result of a fragile estimation framework capable of producing nearly any result from the reported data , including values tens of orders of magnitude large... | Scientists are interested in the number of colors , sounds and smells we can distinguish because this information can shed light onto how our brains process these senses both in health and disease . It is relatively straightforward to determine how many colors we can see or sounds we can hear because these stimuli are ... | [
"Abstract",
"Introduction",
"Building",
"the",
"stimulus",
"space"
] | [
"neuroscience"
] | 2015 | The number of olfactory stimuli that humans can discriminate is still unknown |
Signals delivered by costimulatory molecules are implicated in driving T cell expansion . The requirements for these signals , however , vary from dispensable to essential in different infections . We examined the underlying mechanisms of this differential T cell costimulation dependence and found that the viral contex... | When the immune system detects a virus in the body it mounts a response to eliminate it . Immune cells called CD8+ T cells detect fragments of virus proteins that are presented on the surface of other immune cells . The CD8+ T cells then rapidly divide to form populations that roam the body to kill cells that are infec... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease",
"immunology",
"and",
"inflammation"
] | 2015 | The viral context instructs the redundancy of costimulatory pathways in driving CD8+ T cell expansion |
Sexual selection is generally predicted to act more strongly on males than on females . The Darwin-Bateman paradigm predicts that this should also hold for hermaphrodites . However , measuring this strength of selection is less straightforward when both sexual functions are performed throughout the organism’s lifetime ... | Many factors affect an organism’s ability to survive and reproduce . These factors are often called “selection pressures” and include the availability of food and shelter , conditions in the environment such as temperature , and the presence of diseases and predators . Males and females experience different selection p... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology"
] | 2017 | Sexual selection gradients change over time in a simultaneous hermaphrodite |
The vascular pathogen Verticillium dahliae infects the roots of plants to cause Verticillium wilt . The molecular mechanisms underlying V . dahliae virulence and host resistance remain elusive . Here , we demonstrate that a secretory protein , VdSCP41 , functions as an intracellular effector that promotes V . dahliae v... | Like animals , plants have an immune system to protect themselves from disease . When a plant detects a disease-causing microbe , proteins that serve as master regulators of its immune system activate defense-related genes . Yet some microbes can overcome these defenses and successfully infect plants . Verticillium dah... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology",
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | The plant-specific transcription factors CBP60g and SARD1 are targeted by a Verticillium secretory protein VdSCP41 to modulate immunity |
In amyotrophic lateral sclerosis ( ALS ) and animal models of ALS , including SOD1-G93A mice , disassembly of the neuromuscular synapse precedes motor neuron loss and is sufficient to cause a decline in motor function that culminates in lethal respiratory paralysis . We treated SOD1-G93A mice with an agonist antibody t... | Amyotrophic lateral sclerosis – often shortened to ALS – is a disease that starts with difficulties moving and progresses to paralysis of many muscles , including those used for breathing . The disease is usually lethal , with patients rarely surviving more than a few years after diagnosis . There is no cure or effecti... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Preserving neuromuscular synapses in ALS by stimulating MuSK with a therapeutic agonist antibody |
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