text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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"""
test_Population.py
This file is part of ANNarchy.
Copyright (C) 2013-2016 Joseph Gussev <joseph.gussev@s2012.tu-chemnitz.de>,
Helge Uelo Dinkelbach <helge.dinkelbach@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Ge... | ANNarchy/ANNarchy | tests/Unittests/test_Population.py | Python | gpl-2.0 | 39,563 | [
"NEURON"
] | 7d4ba726d4933182cb5ef557bd086b5c0b057c6e7c8c2b873fc5e07158723511 |
#
# QAPI visitor generator
#
# Copyright IBM, Corp. 2011
#
# Authors:
# Anthony Liguori <aliguori@us.ibm.com>
# Michael Roth <mdroth@linux.vnet.ibm.com>
#
# This work is licensed under the terms of the GNU GPLv2.
# See the COPYING.LIB file in the top-level directory.
from ordereddict import OrderedDict
from qapi ... | KernelAnalysisPlatform/KlareDbg | tracers/qemu/decaf/scripts/qapi-visit.py | Python | gpl-3.0 | 6,227 | [
"VisIt"
] | 7757aad11a0e406d6803296c01e717635d3c7513be5813a3ce4ad68879791b9e |
import vtk
def main():
colors = vtk.vtkNamedColors()
sphereSource = vtk.vtkSphereSource()
sphereSource.Update()
input_data = vtk.vtkPolyData()
input_data.ShallowCopy(sphereSource.GetOutput())
arrowSource = vtk.vtkArrowSource()
glyph3D = vtk.vtkGlyph3D()
glyph3D.SetSourceConnection(... | lorensen/VTKExamples | src/Python/Visualization/OrientedGlyphs.py | Python | apache-2.0 | 1,194 | [
"VTK"
] | d8797e18355467db95f0b3465d2db8ee0ac562a43bfa9a3b49ed66f15136546e |
# encoding: utf-8
# ---------------------------------------------------------------------------
# Copyright (C) 2008-2014, IPython Development Team and Enthought, Inc.
# Distributed under the terms of the BSD License. See COPYING.rst.
# ---------------------------------------------------------------------------
"""... | RaoUmer/distarray | distarray/localapi/random.py | Python | bsd-3-clause | 6,638 | [
"Gaussian"
] | 768c0cb95eea59b0ee5247f3b0fc8dacdde4c32b215aefbf5c939df7d1086e62 |
#!/usr/bin/python3
# -*-coding:Utf-8 -*
# Copyright (C) 2015 Laurent Modolo
# This file is part of TEtools suite for galaxy.
# TEtools is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of th... | l-modolo/TEtools | TEcount.py | Python | gpl-3.0 | 23,494 | [
"Bowtie",
"Galaxy"
] | 38ced2d31acf61e1310b43c6331d3e057fcc7b7dea5e6fc8a33be0ecac72c3e3 |
##############################################################################
# adaptiveMD: A Python Framework to Run Adaptive Molecular Dynamics (MD)
# Simulations on HPC Resources
# Copyright 2017 FU Berlin and the Authors
#
# Authors: Jan-Hendrik Prinz
# Contributors:
#
# `adaptiveMD` is free software: ... | thempel/adaptivemd | adaptivemd/analysis/pyemma/__init__.py | Python | lgpl-2.1 | 1,086 | [
"MDTraj"
] | 27ea405eda7c48306728e465cc993155a63484bc2b1ee85407b04b5d761e5ebe |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | kobejean/tensorflow | tensorflow/python/ops/distributions/normal.py | Python | apache-2.0 | 9,290 | [
"Gaussian"
] | c48c8af4995472f9908100d4abb6cf565ef6b532e5a1cd55ea85ea008c31cf54 |
from antlr4 import *
from autogen.TestParser import TestParser
from autogen.TestVisitor import TestVisitor
class TestExtendVisitor(TestVisitor):
# Visit a parse tree produced by TestParser#Expressions.
def visitExpressions(self, ctx:TestParser.ExpressionsContext):
return self.visitChildren(ctx)
# Visit a parse... | damorim/compilers-cin | antigo/ap2/TestExtendVisitor.py | Python | mit | 1,464 | [
"VisIt"
] | c17861d1f2a9d0e79d9a33fa09a3521c10a29144f866a0ea1b58a024170cc49a |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | retrography/scancode-toolkit | tests/cluecode/test_authors.py | Python | apache-2.0 | 9,422 | [
"VisIt"
] | da19ee2cbf351a9f2547e2bad6542c2558845db3e3c7c98e0ada69ab963c36a8 |
#!/usr/bin/env python
"""
Generate an ECDSA keypair and Bitcoin-compatible payment address.
Requires Brian Warner's excellent python-ecdsa library.
http://github.com/aristus/bitcoin-printer
"""
from ecdsa.ecdsa import Public_key, int_to_string
from ecdsa.ellipticcurve import CurveFp, Point
from binascii import hexlif... | megcoin/megcoin | genecd.py | Python | mit | 2,561 | [
"Brian"
] | abe25fcce2d972fe0b8e34dc18b93a1ca63d8830c2972f83f4d5bfbb21d80e29 |
#!/usr/bin/env python
################################################################################
#
# RMC-vasp
#
# Retriving output data from DFT calculations
#
# Part of the REMARC set of scripts for retriving output data
# from DFT calculations (using VASP).
#
# Specifically writes the DFT data to a text-file t... | NanoSim/Porto | porto/src/remark-wrapper/resource/RMC_vasp.py | Python | gpl-3.0 | 2,751 | [
"VASP"
] | b4243d4d578e8e7267cf0aac9af3b4e420fe3685abe8d27a4c9f5e4efe8e4973 |
# -*- coding: utf-8 -*-
#
# test_parrot_neuron_ps.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the L... | hakonsbm/nest-simulator | pynest/nest/tests/test_parrot_neuron_ps.py | Python | gpl-2.0 | 10,826 | [
"NEURON"
] | 484cfd0bafcf05b3707601afb41c1ce371b40b2c1a59e88b98c9348ad7ce4c28 |
from __future__ import unicode_literals
from frappe import _
def get_data():
return [
{
"label": _("Sales Pipeline"),
"icon": "fa fa-star",
"items": [
{
"type": "doctype",
"name": "Lead",
"description": _("Database of potential customers."),
"onboard": 1,
},
{
"type": "... | gsnbng/erpnext | erpnext/config/crm.py | Python | agpl-3.0 | 5,352 | [
"VisIt"
] | fb7ffd895a76a7d0d84169540a0c68b7784ea85dc60dc5bec0d41f201492c74c |
from impacket import smbserver, smb
import ntpath
from threading import RLock
import json
from quickcrack import try_to_crack_hash
"""
This script acts as an SMB server and gathers credentials from connecting users.
Developed by Brian Wallace @botnet_hutner
"""
sessions = {}
output_file_lock = RLock()
def report_... | CaledoniaProject/SMBTrap | smbtrap/smbtrap2.py | Python | mit | 8,551 | [
"Brian"
] | 1340542d92bcfbb4443389a1ba16f02185d0f61a185872506e9ca8c18db38831 |
#! /usr/bin/env python3
"""A helper to keep the jvplot docstrings consistent."""
import argparse
import ast
import importlib
import os
import pkgutil
import re
_parser = argparse.ArgumentParser()
_parser.add_argument("-o", "--out", default="out",
help="directory to store output in")
_args = _pa... | seehuhn/py-jvplot | tools/doc-strings.py | Python | gpl-3.0 | 16,660 | [
"VisIt"
] | 27367f3c0bce77169098a27346baf665f486c613b550c7b788115b22c9186177 |
# -*- coding: utf-8 -*-
# TODO: Port to pytest
# PEP8 asserts
from copy import deepcopy
import httplib as http
import time
import mock
import pytest
from nose.tools import * # noqa
from tests.base import OsfTestCase, fake
from osf_tests.factories import (
UserFactory, NodeFactory, ProjectFactory,
AuthUserF... | aaxelb/osf.io | addons/wiki/tests/test_wiki.py | Python | apache-2.0 | 60,482 | [
"VisIt"
] | 1f4029c9572c7b1095e096cb3b6ecf1894fbe979f33c0cfe8e047ce065ee28cb |
'''
Created on 14 Aug 2017
@author: Mathias Bucher
'''
import unittest
from mock import MagicMock
from ctr.Controller import Controller
from ctr.Log import Log
from model.Model import Model
from view.View import View
from model.ModelEntry import ModelEntry
import os
from mock import mock_open, patch
import copy
clas... | maeddlae/keepit | test/TestController.py | Python | mit | 15,548 | [
"ADF"
] | a5fc9c83283d118eca70768bfa0cc7b6b9328d3b07d7f21e6990735d99cce8f1 |
"""
@name: Modules/Core/Mqtt/mqtt.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2017-2020 by D. Brian Kimmel
@note: Created on Apr 25, 2017
@license: MIT License
@summary: This is basically the MQTT Api interface that is used by all of pyhouse.
"""
__updated__ = '202... | DBrianKimmel/PyHouse | Project/src/Modules/Core/Mqtt/mqtt.py | Python | mit | 10,509 | [
"Brian"
] | d364c489a4f4d745f3a7821f3d715ac262282c6db1822b07c6d6cd52f0dce4d0 |
# proxy module
from __future__ import absolute_import
from mayavi.modules.structured_grid_outline import *
| enthought/etsproxy | enthought/mayavi/modules/structured_grid_outline.py | Python | bsd-3-clause | 107 | [
"Mayavi"
] | b93c9c2933c828745f6fc6971fefedb4c5fccc60f5b33a99a987b773cd85fedb |
#
# CPM modulation and demodulation.
#
#
# Copyright 2005,2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either ve... | trnewman/VT-USRP-daughterboard-drivers_python | gnuradio-core/src/python/gnuradio/blksimpl/cpm.py | Python | gpl-3.0 | 8,853 | [
"Gaussian"
] | 1c46b5f6275d46c7f800842b46228a9dcdf603eeb58b0003b685049f39cb75bb |
""" Functions to for making PDFs"""
import numpy as np
import scipy as sp
import pandas as pd
import sklearn
from sklearn.model_selection import GridSearchCV
from sklearn.neighbors import KernelDensity
rv_amount = 10**6
def make_pdf(distribution, num_of_draws, grid, stepsize):
"""
Makes PDF of given distribu... | FRBs/DM | frb/dm_kde/pdf_fns.py | Python | bsd-3-clause | 2,468 | [
"Gaussian"
] | 32350038e03a4f8ead20d6b623e7783b5dd29ca3c7587469c0978136819dc606 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS.
"""
from unittest import skip
from ..helpers import UniqueCourseTest
from ...pages.lms.auto_auth import AutoAuthPage
from ...pages.lms.course_info import CourseInfoPage
from ...pages.lms.tab_nav import TabNavPage
from ...pages.xblock.acid import AcidView
from ... | dsajkl/reqiop | common/test/acceptance/tests/lms/test_lms_acid_xblock.py | Python | agpl-3.0 | 4,532 | [
"VisIt"
] | 34d139039212361fbf7328172a7de50f4984668b7ab73ab277695ad09862670f |
import pdb
def readit(filename):
data = open(filename, 'r+')
line = data.readline()
i=1
event_log = {}
while line != '':
if 'event' in line:
line = data.readline()
line = data.readline()
line = data.readline()
line = data.readline()
event = []
while (line.find('event') == -1) & (line.find('sum... | haupt235/waldo | readit.py | Python | mit | 2,060 | [
"VTK"
] | 803c625b587c03487dceac6879fadf2a3553337474937ac510ffff7b0b0c78ff |
import oauth2 as oauth
import urlparse
import urllib
from error import PyReadsError
class OAuthHandler(object):
OAUTH_HOST = 'www.goodreads.com'
OAUTH_ROOT = '/oauth/'
def __init__(self, app_key, app_secret,
oauth_token = None, oauth_token_secret = None):
self.consumer = oauth.Con... | bvattikonda/pyreads | pyreads/auth.py | Python | mit | 3,204 | [
"VisIt"
] | 1ec40962f2ea9dcac9210cf6840b3ca6a873e79282f1c1c16ad324203dc46aac |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, sys, glob, string
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','description','copyright','license','co... | atsusy/tirepeatedbackgroundimage | build.py | Python | mit | 5,876 | [
"VisIt"
] | f9e70a209bc2102f3ed37701d3a2b291bfe7c6cb638fbb71740f15f8d0097eeb |
# -----------------------------------------------------------------------------
# User configuration
# -----------------------------------------------------------------------------
dataset_destination_path = '/Users/seb/Desktop/vtk_cone'
# -----------------------------------------------------------------------------
... | Kitware/tonic-data-generator | scripts/vtk/samples/cone.py | Python | bsd-3-clause | 1,667 | [
"VTK"
] | 2a0dbca419516a72cb07fd4ef436d5458bb89c30b2976913a242ec2f54acbf33 |
# pylint: disable=arguments-differ
""" Models for the shopping cart and assorted purchase types """
from collections import namedtuple
from datetime import datetime
from datetime import timedelta
from decimal import Decimal
import json
import analytics
from io import BytesIO
from django.db.models import Q, F
import py... | solashirai/edx-platform | lms/djangoapps/shoppingcart/models.py | Python | agpl-3.0 | 90,378 | [
"VisIt"
] | 27f51d75d621b851170e70e3b49329f17337b8acef42cc2a8ddcdf4503149c2a |
import Bio.PDB.Polypeptide
from rosettautil.util import fileutil
class pssm_map:
def __init__(self,path,mode="score"):
"""Parse a PSSM file from BLAST into a usable datastructure"""
self.pssmmap = {}
self.native_sequence = {}
pssmfile = fileutil.universal_open(path,'r')
pssmfile.readline()
pssmfile.r... | decarboxy/py_protein_utils | rosettautil/protein/PSSM.py | Python | mit | 1,640 | [
"BLAST"
] | 4ac07e485035809934c286b9aa0145f5014799af1564fb37b719a4fdc4493175 |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
"""
Patch the sequences of one assembly using sequences from another assembly. This
is tested on merging the medicago WGS assembly with the clone-by-clone assembly.
There are a few techniques, used in curating medicago assembly.
1. Split chimeric scaffolds based on genet... | tanghaibao/jcvi | jcvi/assembly/patch.py | Python | bsd-2-clause | 27,294 | [
"BLAST"
] | 53fb22a7f2b80b12e60f203a9ee27ecef714223d4947c578e8be8d203eabc8e2 |
from skimage import data, filters, feature
from skimage.morphology import disk
import matplotlib.pyplot as plt
def ex_1(): # sobel,roberts,scharr,prewitt,canny operator
img = data.camera()
edges = filters.sobel(img)
edges1 = filters.roberts(img)
edges2 = filters.scharr(img)
edges3 = filters.prew... | Esmidth/DIP | practice/10.py | Python | apache-2.0 | 3,117 | [
"Gaussian"
] | 2df0b2809a00982c54bb8e80f9b8fcfbb559b80b194e89a940c4ef675df20707 |
# -*- coding: utf-8 -*-
#
# This file is part of INSPIRE.
# Copyright (C) 2014-2017 CERN.
#
# INSPIRE is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any ... | jacquerie/inspire-dojson | tests/test_hep_bd1xx.py | Python | gpl-3.0 | 51,760 | [
"Brian"
] | 5a327e94cde5d27e58ffb929280bec36092da3e8d972b30b3e82bc6a73c9df94 |
'''
Reads one of David Tack's pre-processed FCXCLEAN.txt files and makes a fasta out of it so that
it can be used by bwa
Usage:
%% python format_sequence_reads.py <FCFile.txt> <output.fasta>
'''
import sys
input_handle = open(sys.argv[1], 'r')
output_handle = open(sys.argv[2], 'w')
first_line = True
for cur_line i... | DworkinLab/ChandlerChariTackDworkin2014 | expression_scripts/dge/format_sequence_reads.py | Python | mit | 639 | [
"BWA"
] | cb7ad29563626d5a5ab95be091e49ba4e28589400237b8519d9492d49d40081f |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <codecell>
from __future__ import division
import numpy as np
from functools import partial
from scipy.stats import linregress
import matplotlib.pyplot as plt
from matplotlib import dates
import pandas as pd
import gspread
from StringIO import StringIO
import csv
i... | JudoWill/ResearchNotebooks | SmokingAnalysis.py | Python | mit | 2,782 | [
"VisIt"
] | d942fa64d3c9d98ca41467d0220f5713d262a171fe01a681dceefb9204beff7a |
"""
NetCDF reader/writer module.
This module is used to read and create NetCDF files. NetCDF files are
accessed through the `netcdf_file` object. Data written to and from NetCDF
files are contained in `netcdf_variable` objects. Attributes are given
as member variables of the `netcdf_file` and `netcdf_variable` objects... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/scipy/io/netcdf.py | Python | gpl-3.0 | 39,509 | [
"NetCDF"
] | 2c39ad0ef31c9ae38ccdf63cabd9340122d2666b6158d48b3e1c39cf0923c589 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from ajax_select import urls as ajax_select_urls
urlpatte... | jomauricio/abgthe | config/urls.py | Python | bsd-3-clause | 1,607 | [
"VisIt"
] | 7a3614bb75f7bff3206ec13544ea985a2f49248b1dd2843cd9313107f61ba812 |
from __future__ import print_function
from pymatch import *
import pymatch.functions as uf
class Matcher:
"""
Matcher Class -- Match data for an observational study.
Parameters
----------
test : pd.DataFrame
Data representing the test group
control : (pd.DataFrame)
Data represe... | benmiroglio/pymatch | build/lib/pymatch/Matcher.py | Python | mit | 21,931 | [
"xTB"
] | 47c1b4584a8dee172c79f35a5051f566977225225837451bead4aae47c4b99e2 |
"""
System time configuration
=========================
This is a collection of parsers that all deal with the system's configuration
of its time setting resources.
"""
import re
from .. import Parser, parser, get_active_lines, CommandParser
from insights.specs import Specs
class NTPConfParser(Parser):
"""
... | RedHatInsights/insights-core | insights/parsers/system_time.py | Python | apache-2.0 | 10,809 | [
"TINKER"
] | 609b740551457b7b110a9c43e765c908fc3f8f74fe218eec659f755c41303f95 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | CDSherrill/psi4 | psi4/driver/p4util/fcidump.py | Python | lgpl-3.0 | 17,523 | [
"Psi4"
] | ce8169401f55f82b97b4a1d3b9daf17d02b2609ab7da736740399cbe01c17789 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
:py:mod:`Namaste.py` - Single transit fitting code
-------------------------------------
'''
import autograd.numpy as np2
import matplotlib
#matplotlib.use('Agg')
import pylab as plt
plt.ioff()
import scipy.optimize as optimize
from os import sys, path
import datetime
i... | hposborn/Namaste | namaste/namaste.py | Python | mit | 85,233 | [
"Gaussian"
] | 837ea23f0f5bfdff6097030ee09c862661a611d3b37c35b35b05d157f30af692 |
from __future__ import print_function, absolute_import, division
from mdtraj.utils.six.moves import xrange
import numpy as np
from numpy import dot
import logging
logger = logging.getLogger(__name__)
def construct_right_eigenvectors(left_eigenvectors, populations, num_macrostates):
"""Calculate normalized right... | msmbuilder/msmbuilder-legacy | MSMBuilder/lumping/utils.py | Python | gpl-2.0 | 3,104 | [
"MDTraj"
] | b0e88cdd2a0bff9ebb80356bb4dcce4083f7fa10bcdba44793e28eab177d4e88 |
# -*- coding: utf-8 -*-
"""
LiveSource tests.
"""
from mock import MagicMock, patch
import unittest
from livesource import LiveSource
class LiveSourceTestCase(unittest.TestCase):
@patch('livesource.livesource.LSTree', MagicMock())
def setUp(self):
self.source = LiveSource('test_code')
self.s... | macie/livesource | livesource/tests/unit/test_LiveSource.py | Python | mit | 1,430 | [
"VisIt"
] | 5ecae44e2d3792fde369d60dcbdb265c71e8196185d7844266d4d01ef4f4bfb8 |
import yaml
from twisted.internet.defer import inlineCallbacks, Deferred
from juju.environment.tests.test_config import (
EnvironmentsConfigTestBase, SAMPLE_ENV)
from juju.machine.tests.test_constraints import dummy_cs
from juju.state.errors import EnvironmentStateNotFound
from juju.state.environment import (
... | anbangr/trusted-juju | juju/state/tests/test_environment.py | Python | agpl-3.0 | 9,145 | [
"MOOSE"
] | ec9bc2316d888bafd34e00b26c4311313cb14ca2c3ede6432e13841bd2a4fa4a |
#!/usr/bin/env python
"""MediaWiki Bot Update script.
This script is supposed to accept some commandline details about a project and then
use the MediaWiki API to update the RL-Library wiki page."""
__author__ = 'brian@tannerpages.com (Brian Tanner)'
import httplib
import os.path
import optparse
import getpass
imp... | litlpoet/rl-library | system/common/scripts/wiki_update.py | Python | apache-2.0 | 3,188 | [
"Brian"
] | 0d4f72023cb0e2c5797378b37da2aef778c60946aadf7339963aba8bf58a4748 |
from sympy.polys.polytools import Poly
from sympy.polys.agca.extensions import FiniteExtension
from sympy.abc import x, t
def test_FiniteExtension():
# Gaussian integers
A = FiniteExtension(Poly(x**2 + 1, x))
assert A.rank == 2
assert str(A) == 'ZZ[x]/(x**2 + 1)'
i = A.generator
assert A.basis ... | wxgeo/geophar | wxgeometrie/sympy/polys/agca/tests/test_extensions.py | Python | gpl-2.0 | 1,161 | [
"Gaussian"
] | 51382329d084f50723d089b51cef88521c66007ee1c2b32a51671488f9ee0558 |
#! /usr/bin/env python
#
# connections.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
... | gewaltig/cython-neuron | topology/doc/user_manual_scripts/connections.py | Python | gpl-2.0 | 17,051 | [
"Gaussian"
] | a46581421cb3a2714a8bd3c193540e89fc3af16a5c965f32edd88d59ec375be9 |
# Copyright 2009 by Peter Cock. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""SeqFeature related tests for SeqRecord objects from Bio.SeqIO.
Initially this takes matched t... | updownlife/multipleK | dependencies/biopython-1.65/Tests/test_SeqRecord.py | Python | gpl-2.0 | 11,103 | [
"Biopython"
] | 90d1a82e69e08ce516cfb565fdb4b27e1887869f63b3f4806afa6978323b9b2e |
""" A generic client for creating transformations
"""
from __future__ import print_function
import types
import json
from DIRAC import gLogger, gConfig, S_OK, S_ERROR
from DIRAC.Core.Utilities.PromptUser import promptUser
from DIRAC.Core.Base.API import API
from DIRAC.TransformationSystem.Client.TransformationClient ... | petricm/DIRAC | TransformationSystem/Client/Transformation.py | Python | gpl-3.0 | 25,770 | [
"DIRAC"
] | 37a3aa2aa47fdd9d830f7fe48cacb94e61a1a477b790f1f9dce83c614123b539 |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, subprocess, sys, glob, string
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['architectures', 'name','version','moduleid','descripti... | shota/TitaniumHttpClient | iphone/build.py | Python | mit | 8,511 | [
"VisIt"
] | e806d2009142cd0ece991754e7763fdf42bcc05dc88cd62b1482e257b4da79c4 |
from selenium import webdriver
from selenium.webdriver.common.keys import Keys
from selenium.webdriver.common.desired_capabilities import DesiredCapabilities
import time
user_agent = (
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_12) AppleWebKit/602.1.50 (KHTML, like Gecko) Version/10.0 Safari/602.1.50'"
)
steps = []
... | ideaworld/FHIR_Tester | FHIR_Tester_backend/h.py | Python | mit | 1,225 | [
"VisIt"
] | da803c98a0ad8b3246eca87ca179aa578f9485cc7a3dd10ab6a12a218f8f60b3 |
#!/usr/bin/python
#
# Copyright 2009 Canonical Ltd. This software is licensed under the
# GNU Affero General Public License version 3 (see the file LICENSE).
"""
FindImports is a script that processes Python module dependencies. Currently
it can be used for finding unused imports and graphing module dependencies
(wi... | abramhindle/UnnaturalCodeFork | python/testdata/launchpad/utilities/findimports.py | Python | agpl-3.0 | 12,315 | [
"VisIt"
] | b79151cc87d069da0b26631f091a37c6eb5ec13ea9c184ea6bb496bc44b04a7e |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# (c) 2015, Brian Coca <bcoca@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Licen... | dagwieers/ansible-modules-extras | notification/jabber.py | Python | gpl-3.0 | 4,488 | [
"Brian"
] | 82a355ec8cb80308ea19eaab4d5f15466b15e4b27dfce1edbe42975f85309d1c |
"""
Copyright (C) 2014, Jaguar Land Rover
This program is licensed under the terms and conditions of the
Mozilla Public License, version 2.0. The full text of the
Mozilla Public License is at https://www.mozilla.org/MPL/2.0/
Rudolf Streif (rstreif@jaguarlandrover.com)
"""
from django.conf import settings
from dja... | bharmon/rvibackend | web/rvi/urls.py | Python | mpl-2.0 | 926 | [
"Jaguar"
] | d04e992d1f2442e64e5966d4b027f6d989c0f9d5bbfbdda28196ec3f24349985 |
"""
GPS Training GUI
The GPS Training GUI is used to interact with the GPS algorithm during training.
It contains the below seven functionalities:
Action Panel contains buttons for stop, reset, go, fail
Action Status Textbox displays action status
Algorithm Status Textbox displays algorithm st... | vmayoral/basic_reinforcement_learning | tutorial10/gps/gui/gps_training_gui.py | Python | gpl-3.0 | 18,871 | [
"Gaussian",
"VisIt"
] | 42130d48846b93e8fe790de56257fca22d12ef07cb8fa8fe8126648071504589 |
#!/usr/bin/python
## $LicenseInfo:firstyear=2011&license=viewerlgpl$
## Second Life Viewer Source Code
## Copyright (C) 2011, Linden Research, Inc.
##
## This library is free software; you can redistribute it and/or
## modify it under the terms of the GNU Lesser General Public
## License as published by the Free Softw... | gabeharms/firestorm | indra/lib/python/indra/ipc/siesta_test.py | Python | lgpl-2.1 | 8,683 | [
"SIESTA"
] | b2c3deb6a8d0028973ef8e90dd9f57371bc2dc2828ae5490d470a52e80e64622 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import with_statement
__author__ = 'Chengwei Luo (luo.chengwei@gatech.edu)'
__version__ = '0.1.0'
__date__ = '09-03-2013'
import numpy as np
import sys
import os
import re
import argparse as ap
import subprocess as subp
import tempfile as tf
import matpl... | luo-chengwei/utilitomics | 16S/MG16S.py | Python | gpl-3.0 | 11,594 | [
"BLAST"
] | 918927e00bfe5099c7e8c4e112c673ec66df4ae8485d31114de851e9b8459ed0 |
#!/usr/bin/env python
'''
To seperate Gaussian log file with with multistep calculation
Userage : seperate_log.py logfile1 logfile2 ...
Created by Chang Liu @ Apr.29.2015
'''
import sys
def seperate_file(filename):
try:
logfile=open(filename, 'r')
inputTemp=logfile.read().splitlines()
logfile.close()
except:
... | chliu1990/plotMO | tools/seperate_log.py | Python | mit | 724 | [
"Gaussian"
] | c7cc8837ac944d409165ba15ce3526749e4ac932159e1604a2526f07831126b9 |
# -*- coding: utf-8 -*-
"""Converted from the neuron modl file by Zach Mainen 1994.
- Subhasis Ray 2014-06-04
Original comment:
COMMENT
26 Ago 2002 Modification of original channel to allow variable time
step and to correct an initialization error.
Done by Michael Hines(michael.hines@yale.e) and Ruggero
Scorcion... | dharmasam9/moose-core | tests/python/mus/nachannel.py | Python | gpl-3.0 | 3,341 | [
"MOOSE",
"NEURON"
] | e1f30602d835f8bfe2486bfa9d82234c38098e43a3504ff3ea4e2916a098bc9e |
# -*- coding: utf-8 -*-
"""
This file contains the Qudi dummy module for the confocal scanner.
Qudi is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later v... | tobiasgehring/qudi | hardware/confocal_scanner_dummy.py | Python | gpl-3.0 | 15,610 | [
"Gaussian"
] | 6dfe52f21b1d81fbed2f52337f1a7f1205686dc1495ebf8cbd14c2a156277f6e |
"""
利用数值优化算法实现的 SVM，在 toysvm.py 中有对应的
SMO 算法实现。
"""
import numpy as np
import math
import scipy.optimize as opt
from functools import partial
from numba import jit
class LinearSVC(object):
def __init__(self, C: float = 1.0):
"""
:param C: float. Penalty parameters.
"""
self.C = C
... | WiseDoge/plume | plume/svm.py | Python | mit | 4,173 | [
"Gaussian"
] | 45ab123eb8895c3dc0f0d3716adacd1644dd3633a5ec72d5d249232f55fd165a |
#!/usr/bin/env python
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library is distributed in the ... | FluidityProject/multifluids | python/fluidity/diagnostics/calc.py | Python | lgpl-2.1 | 40,490 | [
"VTK"
] | 236591fff43b06ff46524e97181846bfd4a93c9be816c6795d0e66dd67a1237e |
import cgi
import logging
import os
import os.path
import re
from PIL import Image
from lxml import etree
from lxml.etree import XMLSyntaxError
from collections import namedtuple, defaultdict
from zipfile import ZipFile, BadZipfile
from docx2html.exceptions import (
ConversionFailed,
FileNotDocx,
Malforme... | PolicyStat/docx2html | docx2html/core.py | Python | bsd-3-clause | 48,167 | [
"VisIt"
] | bc9cbad4ed2cb972e797375eb242e64de08d77248ce943d2b58f82b5a753e268 |
# $Id$
from module_base import ModuleBase
from module_mixins import ScriptedConfigModuleMixin
import module_utils
import vtk
class implicitToVolume(ScriptedConfigModuleMixin, ModuleBase):
def __init__(self, module_manager):
ModuleBase.__init__(self, module_manager)
# setup config
self._c... | nagyistoce/devide | modules/misc/implicitToVolume.py | Python | bsd-3-clause | 3,680 | [
"VTK"
] | c4e6ab5fac98f795d6ea794456fbe2776818029b747a1be2a69b278cf70b2ad9 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | pcm17/tensorflow | tensorflow/contrib/distributions/python/ops/mvn_diag_plus_low_rank.py | Python | apache-2.0 | 9,697 | [
"Gaussian"
] | 2b5e9aeb8c1644a39db729cb5df8cb809478c8d64e18b725f70e3bf5106c0bf5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
########################################################################
# File : dirac-create-distribution-tarball
# Author : Adria Casajus
########################################################################
"""
Create tarballs for a given DIRAC release
"""
impo... | fstagni/DIRAC | Core/scripts/dirac-create-distribution-tarball.py | Python | gpl-3.0 | 24,020 | [
"DIRAC"
] | 55b1858010478d5b6017aa2ea4a9c548ee13507847b13fdad6d07947f5ae56c7 |
"""
Courseware views functions
"""
import logging
import urllib
import json
import cgi
from datetime import datetime
from collections import defaultdict
from django.utils import translation
from django.utils.translation import ugettext as _
from django.utils.translation import ungettext
from django.conf import setti... | eestay/edx-platform | lms/djangoapps/courseware/views.py | Python | agpl-3.0 | 56,196 | [
"VisIt"
] | 99293b69dbe1635b6737baea8d7e158ce8723cacfd79cdfa053567c39770d8e4 |
# -*- coding: utf-8 -*-
"""
solace.tests.validation
~~~~~~~~~~~~~~~~~~~~~~~
A unittest that validates the pages using the validator.nu HTML5
validator.
:copyright: (c) 2009 by Plurk Inc., see AUTHORS for more details.
:license: BSD, see LICENSE for more details.
"""
import re
import sys
import... | Plurk/Solace | solace/tests/validation.py | Python | bsd-3-clause | 2,955 | [
"VisIt"
] | b583128d940e2ffafb5e8eb7c44d7136c721cda7190eef399134dc523643e68d |
""" Graph is a class providing layouts for the complete plot images including
titles multiple plots and a legend
The DIRAC Graphs package is derived from the GraphTool plotting package of the
CMS/Phedex Project by ... <to be added>
"""
from __future__ import print_function
__RCSID__ = "$Id$"
import datet... | chaen/DIRAC | Core/Utilities/Graphs/Graph.py | Python | gpl-3.0 | 11,717 | [
"DIRAC"
] | 048e9e2bccbcf9254f7b284073e3e7e6fe636801a2c4b2552304ae9ae7bba0e2 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
Copyright (C) 2011-2015 German Aerospace Center DLR
(Deutsches Zentrum fuer Luft- und Raumfahrt e.V.),
Institute of System Dynamics and Control
All rights reserved.
This file is part of PySimulator.
PySimulator is free software: you can redistribute it and/or modify... | PySimulator/PySimulator | PySimulator/PySimulator.py | Python | lgpl-3.0 | 31,662 | [
"MOE"
] | b533e0c3ac5f9f76ca4057e0303457500e28cdfc5d6df87b5f1971aa2872b170 |
import os
from setuptools import setup, find_packages
setup(name='pyribotools',
version='0.0.1',
#packages=find_packages(),
description='pyribotools is a Python module to analyze RIBO-seq NGS data',
author='Patrick Lombard',
author_email='ptk.lmb55@gmail.com',
packages=['pyribotools... | pdl30/pyribotools | setup.py | Python | gpl-2.0 | 1,041 | [
"pysam"
] | c1749ca9126867fe9ad220fcf8c3316c440222e0f6d7e92bb5c95d556f559f4a |
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SearchIO parser for HMMER domain table output format."""
from itertools import cha... | updownlife/multipleK | dependencies/biopython-1.65/build/lib.linux-x86_64-2.7/Bio/SearchIO/HmmerIO/hmmer3_domtab.py | Python | gpl-2.0 | 12,556 | [
"Biopython"
] | b5fd6d026ce00ebafec93c0633f0581fa227ccf1c9847c365c28783e2bcfae3a |
# -*- coding: utf-8 -*-
#
# Synctity documentation build configuration file, created by
# sphinx-quickstart on Thu Aug 5 14:05:09 2010.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# Al... | beastwood/synctity | doc/sphinx/conf.py | Python | gpl-3.0 | 6,401 | [
"Brian"
] | 5f17ae3ce34d1bf6c782a9136644a1fa53c9dc3fdd94eb85facd6541fbb20519 |
"""
Olfaction specification for NeuroKernel
"""
from random import uniform
import numpy as np
from collections import OrderedDict
from lxml import etree
from abc import ABCMeta, abstractmethod, abstractproperty
import gzip
from neuron import *
from synapse import *
Odor_databas = {'Acetone':[ 1, -10, 29, 0, -... | neurokernel/antennal_lobe | examples/data/antennallobe.py | Python | bsd-3-clause | 13,753 | [
"NEURON"
] | 561f25b349fa70bca5ee9a4c42bbbd330f5f085ba298b1c81359d3ec1acb831c |
#!/usr/bin/python -u
import os, sys, fnmatch
# do a basic check to see if pylint is even installed
try:
from pylint.__pkginfo__ import version as pylint_version
except ImportError:
print "Unable to import pylint, it may need to be installed"
sys.exit(1)
# Classes of errors we ignore on quiet runs
IGNORED... | ColinIanKing/autotest | utils/run_pylint.py | Python | gpl-2.0 | 4,224 | [
"VisIt"
] | 5e833df48710e32324ea3ab9269a59af91563013db78e19c7ba880f661abd595 |
import math
from numba import cuda, float32, float64, uint32, int64, uint64, from_dtype,\
jit
import numpy as np
# This implementation is based upon the xoroshiro128+ and splitmix64 algorithms
# described at:
#
# http://xoroshiro.di.unimi.it/
#
# and originally implemented by David Blackman and... | sklam/numba | numba/cuda/random.py | Python | bsd-2-clause | 9,154 | [
"Gaussian"
] | f34264e97da30af0a002676f86631fcd36e0141b2b66cd780d98db8d7fcce720 |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/cc/_ccsd.py | Python | apache-2.0 | 949 | [
"PySCF"
] | 7e58a7581d6c505ea577b05504c5d2223e014f4f36f44cd01416b83f7a83a4bb |
# -*- coding: utf-8 -*-
#
# gif_cond_exp_multisynapse.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of t... | weidel-p/nest-simulator | pynest/examples/gif_cond_exp_multisynapse.py | Python | gpl-2.0 | 1,427 | [
"NEURON"
] | c521083e31cd6f8905a27a0f8a4198b275b40a99a437440a58ad387e34d0142f |
#!/usr/bin/env python
#
# Copyright 2013 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Convert Android xml resources to API 14 compatible.
There are two reasons that we cannot just use API 17 attributes,
so we are ge... | s20121035/rk3288_android5.1_repo | external/chromium_org/build/android/gyp/generate_v14_compatible_resources.py | Python | gpl-3.0 | 13,761 | [
"Galaxy"
] | 0a8cfc6387787167b72eca7a8d839490aa4c53510dcb9d2be5be71ad3e4936aa |
"""Scraper for Supreme Court of Maine
CourtID: me
Court Short Name: Me.
Author: Brian W. Carver
Date created: June 20, 2014
History:
2014-06-25 (est): Added code for additional date formats.
2014-07-02: Was receiving InsanityException and tweaked date code to get some
missing dates.
2014-12-15: Fix... | brianwc/juriscraper | opinions/united_states/state/me.py | Python | bsd-2-clause | 1,717 | [
"Brian"
] | c338d1586fc1992634f1f9c4b7a361c060987acc35a18ce788274d5c486069dd |
#
# Copyright 2001 - 2016 Ludek Smid [http://www.ospace.net/]
#
# This file is part of Outer Space.
#
# Outer Space is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (... | ospaceteam/outerspace | server/lib/ige/ospace/IPlayer.py | Python | gpl-2.0 | 60,285 | [
"Galaxy"
] | 7cb1412bb1b419bc39ae43fa697b01e92d62690fd5e575dda8b86d5dae552403 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views import defaults as error_views
urlpatterns = [
url(r'^adm... | MauricioDinki/cookiecutter-django-template | {{cookiecutter.repo_name}}/config/urls.py | Python | mit | 1,151 | [
"VisIt"
] | 02d691684c77f8a567e5b6dcb7882b3f6df521adc875e8b1b048683217273572 |
# -*- coding: utf-8 -*-
#
# connections.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or... | obreitwi/nest-simulator | topology/doc/user_manual_scripts/connections.py | Python | gpl-2.0 | 18,232 | [
"Gaussian"
] | 3d7a8baf42d34e93fead8047a8be878ad624843ba9c3ce5293b77960e92def12 |
#!/usr/bin/env python
import os
import sys
import time
import logging
import itertools
import argparse
from multiprocessing import Pool, cpu_count, Process
import pychemia
from pychemia.utils.periodic import atomic_symbol
try:
from qmpy import Entry
except ImportError:
Entry = None
print("Could not import... | MaterialsDiscovery/PyChemia | scripts/OQMD2PyChemia.py | Python | mit | 10,452 | [
"CRYSTAL"
] | a6098e870bb280923068eba705bf185e251cd30e78345d52ec219ed012de1ae1 |
"""A spectral transforms engine using pyspharm."""
# (c) Copyright 2016 Andrew Dawson.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | ajdawson/python_for_climate_scientists | course_content/barotropic-model/barotropic/pyspharm_transforms.py | Python | gpl-3.0 | 4,234 | [
"Gaussian"
] | 2b9dafa65778c5d9c5effbecdc00fa7e9241d906563d1ad9cc7fa35d53412437 |
# GromacsWrapper: top.py
# Copyright (c) 2009 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Public License 3 (or higher, your choice)
# See the file COPYING for details.
from __future__ import division, absolute_import, print_function
import os
import numpy as np
import numpy.matlib
from numpy.testi... | pslacerda/GromacsWrapper | gromacs/tests/test_fileformats/test_top/top.py | Python | gpl-3.0 | 5,409 | [
"Gromacs"
] | 9ee8ace79f69f2329b8127fc60b3af881fa8a73aefb82ad48fdc264d95884822 |
import ocl
import camvtk
import time
import vtk
import datetime
import math
def drawFiber_clpts(myscreen, f, fibercolor=camvtk.red):
inter = f.getInts()
#print "fiber has ", len(inter) , " intervals"
for i in inter:
if not i.empty():
ip1 = f.point( i.lower )
ip2 = f.point( i... | AlanZatarain/opencamlib | scripts/fiber_14_z-levels_cc-colors.py | Python | gpl-3.0 | 3,780 | [
"VTK"
] | 1a3949591140ff2e509799ab4179a19eaa0b6252f0d6f7468cfa48c0827e451a |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | mfherbst/spack | var/spack/repos/builtin/packages/lulesh/package.py | Python | lgpl-2.1 | 3,558 | [
"BLAST"
] | 5253f546162b540d5c360d32e21aad0d76d85e6e88f6a822a7f01e0663c80b23 |
'''
evaluates the exact (no finite sample issues considered) bias of the Triple Correlation error variance \hat{sigma_x}^2
under the assumptions that the three data sets have been matched by CDF-matching and that all distributions are Gaussians
The stochastic signal model (zero mean) is assumed to be
X=\alpha_x T + \... | szwieback/nlscaling | CDFAnalyticalBias/evaluateCDFBiasLinearGaussian.py | Python | gpl-3.0 | 942 | [
"Gaussian"
] | 79e3e8c9d76818a83337ee762a992be7eb094150b05812b98dcb3bb40bdbaf31 |
"""
Filter VCF and output only SNP calls in a sequence context where there
is a different homopolymer either side of the site, one of which is the same base as the ALT
allele, and one is the ref e.g. ref sequence is AAAAATTTTT and SNP is T-->A or A --> A.
"""
import sys
import pysam
a = pysam.Fastafile(sys.argv[1])
t... | andyrimmer/Platypus | scripts/printLRHpCounts.py | Python | gpl-3.0 | 2,731 | [
"pysam"
] | e054591eb325bd61cc2ed1a32ba68bc134336cb592a53c73d6cd886702fae886 |
"""
Genotype a set of SV calls in a given set of BAMs.
"""
import argparse
from collections import defaultdict
import logging
import numpy as np
import pysam
from scipy.stats import sem
from get_best_alignment import get_best_alignments, get_depth_by_reference_and_position
np.random.seed(1)
# create logger
logger = l... | EichlerLab/pacbio_variant_caller | scripts/genotype.py | Python | mit | 7,731 | [
"pysam"
] | 4ef71116d1873ac1a246bc75ee040d4574bbae3df888155b68adb25678ea9d4c |
# Copyright 2017-2021 TensorHub, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writ... | guildai/guild | guild/plugins/skopt.py | Python | apache-2.0 | 7,961 | [
"Gaussian"
] | c0d69460281dcb044f050d647de16476ca7f215235611458b4d9fef1928d02b4 |
# -*- coding: utf-8 -*-
#
# balancedneuron.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | obreitwi/nest-simulator | pynest/examples/balancedneuron.py | Python | gpl-2.0 | 6,749 | [
"NEURON"
] | ad6cf6aac3d3950fc31c41d7883e7caff2ba62a8e1bf2a2d2f2efe66131ef5c1 |
#!/usr/bin/env python
"""
Run this test like so:
$ vtkpython TestGL2PSExporter.py -D $VTK_DATA_ROOT \
-B $VTK_DATA_ROOT/Baseline/Rendering/
$ vtkpython TestGL2PSExporter.py --help
provides more details on other options.
Please note that this test requires that you have PIL (the Python
Imaging Library) module insta... | b3c/VTK-5.8 | Rendering/Testing/Python/TestGL2PSExporter.py | Python | bsd-3-clause | 5,096 | [
"VTK"
] | bdc45c5eb2e8b313febfe5416cc6f2bb7bc90914d0d661205bf89d201c6bfd4a |
# overall python packages
import glob
import h5py
import os
import time
import numpy as n
import sys
# specific functions
from scipy.stats import norm
from scipy.integrate import quad
from scipy.interpolate import interp1d
# dedicated packages
#import ClusterScalingRelations
#cl = ClusterScalingRelations.ClusterScali... | JohanComparat/pyEmerge | bin/add_Xray_AGN.py | Python | unlicense | 8,441 | [
"Galaxy"
] | afcda799e7d14aba7a63e7d659197423faa3b3c5b96abefac8cff9b1ddf49d9d |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/view/controls/delegates/currencydelegate.py | Python | gpl-2.0 | 1,210 | [
"VisIt"
] | b12ccc4aa4c2defb3a1236f971743b342b9fe7cb737866fc26b4a4ab76b95df9 |
# -*- coding: utf-8 -*-
"""
Created on Thursday April 20
@author: Brian L. Dorney
"""
import sys, os
import numpy as np
from scipy import interpolate
from Utilities import *
from ROOT import gROOT, TCanvas, TDirectory, TFile, TGraph2D
#The amount of charge collected on the readout of a GEM detector
#wh... | bdorney/CMS_GEM_Analysis_Framework | python/AnalysisSuiteClusterCharge.py | Python | gpl-3.0 | 18,831 | [
"Brian"
] | 97e24dbc67b799be6f480e0fba4abe20c7b833f2e750eb8a5da363edd78be472 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | le9i0nx/ansible | lib/ansible/modules/network/avi/avi_tenant.py | Python | gpl-3.0 | 4,512 | [
"VisIt"
] | 2bd0531a8d8408661d95df7d5ae90522932fcd31f28d124a4021d31364df360b |
#!/usr/bin/env python
"""
Calculate displacements and strains for line loading in an elastic half-space
of a isotropic, homogeneous body undergoing small strain.
See
Johnson, K.L. Contact Mechanics. 2.2 Line Loading of an Elastic Half-Space:
Concentrated Normal Force. Cambridge University Press. 1985.
Fearing, Ron... | KitwareMedical/ITKStrain | test/Input/ConcentratedNormalLineForce.py | Python | apache-2.0 | 5,117 | [
"VTK"
] | ab49358aa8c080ad3a73c4ba4db84ab6574bdbe0e5e17e5367ac39a230756eb9 |
from __future__ import division, print_function, absolute_import
from scipy.lib.six import xrange
from numpy import (logical_and, asarray, pi, zeros_like,
piecewise, array, arctan2, tan, zeros, arange, floor)
from numpy.core.umath import (sqrt, exp, greater, less, cos, add, sin,
... | maciejkula/scipy | scipy/signal/bsplines.py | Python | bsd-3-clause | 11,582 | [
"Gaussian"
] | a185688131ef980d6f638ea475bb44079194b77814836c31d15cea0b842c1399 |
"""
This transform implements time management functions (delay_mu/now_mu/at_mu)
using an accumulator 'now' and simple replacement rules:
delay_mu(t) -> now += t
now_mu() -> now
at_mu(t) -> now = t
The function delay(), that uses seconds, must be lowered to delay_mu() before
invoking this transfor... | fallen/artiq | artiq/transforms/lower_time.py | Python | gpl-3.0 | 2,100 | [
"VisIt"
] | c0afb67c99f198899bc88287aabfdf3b28d2e966f999f25a3e2fd5bc778f165c |
'''
|pypi version| |pypi license| |travis ci|
Generate PAC file from gfwlist, custom rules supported.
For more information, please visit `project page`_.
.. |pypi version| image:: https://img.shields.io/pypi/v/genpac.svg
:target: https://pypi.python.org/pypi/genpac
.. |pypi license| image:: https://img.shields.i... | JinnLynn/genpac | setup.py | Python | mit | 1,816 | [
"VisIt"
] | 779bc19a83a1d2b7c6c017d8489875c9717bebba3ba01a1b7c40976852381341 |
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