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#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright: (c) 2017, Marc Tschapek <marc.tschapek@itelligence.de>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
ANSIBLE_METADATA = {'metadata_version': '1.1',
'status': ['preview'],
'supp... | alxgu/ansible | lib/ansible/modules/windows/win_disk_facts.py | Python | gpl-3.0 | 29,552 | [
"VisIt"
] | 4ebf98f3abdf103cd23e10369136547e0fd7eaa4df299dae755ecd6f7098474b |
"""
This module is generally for estimating the latest detectable spectral type.
For now, it has a function to get the expected vsini PDF of a given companion, given the age of the system.
"""
import os
import logging
from collections import defaultdict
import multiprocessing
from astropy import units as u, constants
... | kgullikson88/General | EstimateDetection.py | Python | gpl-3.0 | 14,838 | [
"Gaussian"
] | e51a5e6e17d3cc2e825c47e2ef21592a106936cc1977da32e6f455ecb08ac3fd |
# -*- coding: utf-8 -*-
""" Sahana Eden Common Alerting Protocol (CAP) Model
@copyright: 2009-2012 (c) Sahana Software Foundation
@license: MIT
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to dea... | vgupta6/Project-2 | modules/eden/cap_back.py | Python | mit | 44,477 | [
"VisIt"
] | e44e0a94eaa85db396fdb8d63e84d10806a4057f5c471a2bae269c5f9b488c73 |
#!/usr/bin/env python
#
# Copyright 2008,2009,2011,2012 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3, or (at ... | scalable-networks/gnuradio-3.7.0.1 | gr-uhd/apps/uhd_siggen_base.py | Python | gpl-3.0 | 17,172 | [
"Gaussian"
] | 06646a7a5666a29c193a0874e880e7285b6efcb5749fb905ffc4025811f675ae |
import collections
import functools
import re
import sys
from ndmake import debug
from ndmake import depgraph
from ndmake import space
from ndmake import template
dprint = debug.dprint_factory(__name__)
# A static representation of a computational pipeline.
# A depgraph.Graph is generated from a Pipeline.
# Impleme... | marktsuchida/NDMake | ndmake/pipeline.py | Python | mit | 22,158 | [
"VisIt"
] | fe052ea64194e202eb893c6a8ff26806b668b25c1dd746bd8b9c13cbb16cc24c |
#* This file is part of Zapdos, an open-source
#* application for the simulation of plasmas
#* https://github.com/shannon-lab/zapdos
#*
#* Zapdos is powered by the MOOSE Framework
#* https://www.mooseframework.org
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.htm... | lindsayad/zapdos | problems/analyze_matrix.py | Python | lgpl-2.1 | 849 | [
"MOOSE"
] | 8d327e0c47d90b8e01e2a77b8c40a3fb9f4f56c655beccea88dc5b0ec30ce96a |
# -*- coding: utf-8 -*-
"""
Created on Sat Jan 17 20:17:14 2015
@author: rlabbe
"""
from scipy.stats import t, norm
import matplotlib.pyplot as plt
import numpy as np
import math
import random
df =4
mu = 10
std = 2
x = np.linspace(-5, 20, 100)
plt.plot(x, t.pdf(x, df=df, loc=mu, scale=std), 'r-', l... | zaqwes8811/micro-apps | self_driving/deps/Kalman_and_Bayesian_Filters_in_Python_master/experiments/distributions.py | Python | mit | 865 | [
"Gaussian"
] | 5e8777074fbf8894fa69f5a4fcfd6e896f858b6c011eedab20934e19c05189ef |
""" Schemas for resonant scanners."""
import datajoint as dj
from datajoint.jobs import key_hash
import matplotlib.pyplot as plt
import numpy as np
import scanreader
from . import experiment, injection, notify, shared
from .utils import galvo_corrections, signal, quality, mask_classification, performance
from .excepti... | dimitri-yatsenko/pipeline | python/pipeline/reso.py | Python | lgpl-3.0 | 80,726 | [
"Gaussian"
] | 6f0b2046c4007a29969d750bb19af305d8068d73f2eed6bb88ff05705b6cf3f4 |
"""The sequential SOMs."""
import json
import logging
from functools import reduce
from typing import Callable, List, Optional, Tuple
import numpy as np
from tqdm import tqdm
from somber.components.utilities import shuffle
from somber.components.initializers import range_initialization
from somber.ng import Ng
from s... | stephantul/somber | somber/sequential.py | Python | mit | 9,994 | [
"NEURON"
] | 1bd0955dafc20217b25a351b3e0904a57a3089153a359703c1289c0700a89f2e |
import logging
import sys
import pytest
import rasterio
from rasterio.profiles import default_gtiff_profile
from rasterio.vfs import parse_path, vsi_path
logging.basicConfig(stream=sys.stderr, level=logging.DEBUG)
def test_parse_path_with_vfs():
"""Correctly parse path with legacy vfs parameter"""
assert ... | kapadia/rasterio | tests/test_vfs.py | Python | bsd-3-clause | 2,683 | [
"NetCDF"
] | 633d46e9267dd305f743e46b179b6536c38de71f2a6fc500f8eb52b0681289aa |
#!/usr/bin/env python
from enthought.mayavi import mlab
import h5py
import numpy as np
import time
from enthought.traits.api import *
from enthought.traits.ui.api import View, Item, ButtonEditor
"""
README:
to run the training or the visualization only, just type:
import training
training.run(file1,file2)
It is a... | chaubold/hytra | empryonic/training.py | Python | mit | 16,141 | [
"Mayavi"
] | b00219d2c8548f56d44fe65250a76b9d19cdf8fe311f568bdf8fb0d6d36cfc10 |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | bradtopol/kubernetes | cluster/juju/layers/kubernetes-worker/reactive/kubernetes_worker.py | Python | apache-2.0 | 38,392 | [
"CDK"
] | 764d6cb0a691d3a55d15632543d29b873b04d0a784ed24e29b6f54184021e395 |
from base import BaseBot
from scraping import fleet, general, hangar
from copy import copy
class TransporterBot(BaseBot):
"""Logging functions for the bot"""
def __init__(self, browser, config, planets):
self.fleet_client = fleet.Fleet(browser, config)
self.hangar_client = hangar.Hangar(brows... | winiciuscota/OG-Bot | ogbot/core/transporter.py | Python | mit | 2,020 | [
"CRYSTAL"
] | 5f625ce4bee622da8a3c860fe7c06095c7593e9178f296e8ba94013406f50a5a |
"""
Common utilities for translation, massaging data, etc., that don't fit
elsewhere in owmeta
"""
import re
__all__ = ['normalize_cell_name']
# to normalize certain neuron and muscle names
SEARCH_STRING = re.compile(r'\w+0+[1-9]+')
REPLACE_STRING = re.compile(r'0+')
SEARCH_STRING_MUSCLE = re.compile(r'\w+BWM\w+')
REP... | openworm/PyOpenWorm | owmeta/utils.py | Python | mit | 951 | [
"NEURON"
] | 2665f8f4b1c72d0fd4c27088a456523494ef672dac1b5efb896e1445f5af24bb |
from .dataset import DataSet
from .helpers import to_one_of_n
from scipy.stats import norm
from . import positions
import numpy as np
def sine(freq, nchannels, duration, sample_rate):
'''
Generate a fake dataset containing sine waves.
Example:
>>> import psychic
>>> print psychic.fake.sine(10, 4,... | wmvanvliet/psychic | psychic/fake.py | Python | bsd-3-clause | 3,768 | [
"Gaussian"
] | 15b996671f7c2c7a9832977f51812cff84ef8cd0d9f8453a545595697df02ef5 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
from pymatgen.core.lattice import Lattice
from pymatgen.core.structure import Structure
from pymatgen.symmetry.kpath import KPathSeek
from pymatgen.util.testing import PymatgenTest
try:
from seekpath imp... | vorwerkc/pymatgen | pymatgen/symmetry/tests/test_kpath_hin.py | Python | mit | 5,728 | [
"pymatgen"
] | 250de879cd00b78d6b1ccdfdf24c8a1d4d57fa0e96c2867438ee3ac02f5e225b |
#!/usr/bin/env python
# Copyright (C) 2012 Tianyang Li
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This progr... | tianyang-li/meta-transcriptome | uniform-test/contig_bowtie2_uniform_test_rao_spacing.py | Python | gpl-3.0 | 3,068 | [
"HTSeq"
] | 5e293f1599dd1f4d13ae2eef5fe602411f5d717603bd90fe9e7866bfcba81167 |
from time import time
from gpaw.transformers import Transformer
from gpaw.grid_descriptor import GridDescriptor
from gpaw.mpi import world
ngpts = 80
N_c = (ngpts, ngpts, ngpts)
a = 10.0
gd = GridDescriptor(N_c, (a, a, a))
gdcoarse = gd.coarsen()
restrict = Transformer(gd, gdcoarse, 2).apply
a1 = gd.empty()
a1[:] = 1.... | qsnake/gpaw | oldtest/parallel/restrict.py | Python | gpl-3.0 | 534 | [
"GPAW"
] | 68ef14939ff6bd3f0070168b8bb50c6f72d7a6da43f096e12028785d599f7de6 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2007, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | zenoss/ZenPacks.community.OpenSolaris | ZenPacks/community/OpenSolaris/modeler/plugins/zenoss/cmd/solaris/netstat_an.py | Python | gpl-2.0 | 3,483 | [
"VisIt"
] | 5fefcec2000e64886c74215e0295605808372d8de57b0a071b0d5b7db922427b |
import os
import shutil
import numpy as np
from os.path import join as pjoin
from distutils.core import setup, Command
from distutils.extension import Extension
from Cython.Distutils import build_ext
extensions = [
Extension(
"numpush.posix_io.iothread",
["numpush/posix_io/iothread.pyx"],
... | sdiehl/numpush | setup.py | Python | mit | 3,346 | [
"MOOSE"
] | 1f354039466679f2c8676c90b9709bfdbef8aa50e673ba8e4f42faa572a818a0 |
import os
import logging
import time
import matplotlib.pyplot as plt
import numpy as np
import seaborn as sns
import mbuild as mb
import metamds as mds
import mdtraj as md
from simgen.project import Project
OFFLINE = True
def build_monolayer(chain_length, n_molecules, **kwargs):
from mbuild.examples import Al... | iModels/demos | demos/monolayer/monolayer_simgen.py | Python | mit | 3,102 | [
"MDTraj"
] | 4e2f451e0e08e0ca62bb1dcce2d244578bdb844fa11507b8ceedf68717364dd8 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | kkreis/espressopp | src/tools/povwrite.py | Python | gpl-3.0 | 9,556 | [
"ESPResSo",
"VMD"
] | b967fc965d68a554f1931d4fead8d24f778fdb9716f20895c65c1e07bfc2ba80 |
import os
import sys
import numpy as np
from google.protobuf import text_format
from .layers import *
from .core import print_stderr
try:
import caffe
PYCAFFE_AVAILABLE = True
except ImportError:
import caffepb
PYCAFFE_AVAILABLE = False
print_stderr('WARNING: PyCaffe not found!')
print_stderr(... | polltooh/FineGrainedAction | nn/kaffe/core.py | Python | mit | 15,245 | [
"VisIt"
] | c5fe93d490b0554e57face0c4531f4c0313c6229ae351ed08b9a5d47cd2146e8 |
#
# Copyright (c) 2010-2011 Brian E. Granger & Min Ragan-Kelley
#
# This file is part of pyzmq.
#
# pyzmq is free software; you can redistribute it and/or modify it under
# the terms of the Lesser GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, ... | felipecruz/zmqpy | zmqpy/tests/pyzmq_tests/test_pair.py | Python | bsd-2-clause | 2,028 | [
"Brian"
] | daf98a7d7d0c857d475cb45829bd59dbbf63c0d9e73b75692cea0628d1ec4307 |
#!/usr/bin/env python
from __future__ import division, absolute_import, print_function
import os
import sys
import argparse
import redmapper
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='Calibrate the redMaGiC red galaxy selection')
parser.add_argument('-c', '--configfile', action... | erykoff/redmapper | bin/redmagic_calibrate.py | Python | apache-2.0 | 520 | [
"Galaxy"
] | b27f7aa20e0ec488041e5f483ba9839dcfb7226d740e1a404c1185c7e4af12a8 |
from datetime import datetime, timedelta
from django.test import TestCase
from django.contrib.auth.models import User
from rest_framework.test import APIClient
from app.models.profile import Profile
from app.models.gym import Gym
from app.models.gym_item import GymItem
from app.models.raid_item import RaidItem
import p... | Gimpneek/exclusive-raid-gym-tracker | app/tests/api/api_common.py | Python | gpl-3.0 | 2,024 | [
"VisIt"
] | 1f00e59b85f076fb7cf0f50591a35ba802850ce5d2e16b9ce3256e382ce8e56a |
from math import sqrt
import numpy as np
__all__ = ['FixCartesian', 'FixBondLength', 'FixedMode', 'FixConstraintSingle',
'FixAtoms', 'UnitCellFilter', 'FixScaled', 'StrainFilter',
'FixedPlane', 'Filter', 'FixConstraint', 'FixedLine',
'FixBondLengths', 'FixInternals']
def slice2enlis... | conwayje/ase-python | ase/constraints.py | Python | gpl-2.0 | 44,293 | [
"ASE"
] | d090b0219b357faff8175f51f59d2249554e4ea46ff471a95bb4429b718a3f2d |
from __future__ import division, unicode_literals, absolute_import, print_function
import copy, sys, os
import numpy as np
from operator import itemgetter
import shutil
from tabulate import tabulate
from siman import header
from siman.header import print_and_log, printlog, runBash
from siman.calc_manage import add_lo... | dimonaks/siman | siman/neb.py | Python | gpl-2.0 | 30,224 | [
"VASP"
] | 0ff7156fa903af4eee082b7f628b3191aaca94bb3375326b4b41d41150047197 |
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2017 Esteban Tovagliari, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a c... | aytekaman/appleseed | src/appleseed.studio/python/studio/plugins.py | Python | mit | 2,929 | [
"VisIt"
] | 6d496e9b901ff90249af6ea5bd9a7d5c03c9b9a3f9c977acfce089a938c4215c |
import logging,itertools,ptypes
from ptypes import pstruct,parray,dyn,ptype,pstr,pint
from ..headers import *
class IMAGE_SYM(pint.enum, uint16):
_values_ = [
('UNDEFINED', 0),
('ABSOLUTE', 0xffff), #-1),
('DEBUG', 0xfffe) #-2)
]
def Index(self):
'''Returns the phys... | arizvisa/syringe | lib/pecoff/portable/symbols.py | Python | bsd-2-clause | 12,910 | [
"MOE"
] | 8e1f65695a84aa4ddf3c8eadef0767718e2c72ac499c1a2e00b32ed71376c6bc |
import os
from arrow.arrow import Arrow
from datetime import datetime
from dateutil.relativedelta import relativedelta
from django.apps import apps as django_apps
from django.conf import settings
from django.test import TestCase, tag
from django.test.utils import override_settings
from edc_base.utils import get_utcnow... | botswana-harvard/edc-appointment | edc_appointment/tests/test_appointment_creator.py | Python | gpl-2.0 | 7,012 | [
"VisIt"
] | 58fab213b46f3736ead99ffcd2584624eafa0eb9974276c95418ea42a80bfcfe |
# -*- coding: utf-8 -*-
# (c) 2017-2019, ETH Zurich, Institut fuer Theoretische Physik
# Author: Dominik Gresch <greschd@gmx.ch>
"""
Defines a crystal lattice class.
"""
import numpy as np
import scipy.linalg as la
from fsc.export import export
# TODO: move to a separate module # pylint: disable=fixme,useless-suppr... | Z2PackDev/bands_inspect | bands_inspect/lattice.py | Python | apache-2.0 | 1,413 | [
"CRYSTAL"
] | b29972fa0c1acae783ddd6ea71d178df626b27138577db46134e999e4c670e07 |
#!/usr/bin/env python
"""
Copyright (c) 2006-2015 sqlmap developers (http://sqlmap.org/)
See the file 'doc/COPYING' for copying permission
"""
import codecs
import contextlib
import cookielib
import copy
import getpass
import hashlib
import httplib
import inspect
import json
import locale
import logging
import ntpath... | JeyZeta/Dangerous | Dangerous/sqlmap/lib/core/common.py | Python | mit | 133,014 | [
"VisIt"
] | e56070d825783d754ac224533123cbef700336341286236b7f245d4fc0afe073 |
#!/usr/bin/python
import optparse, sys, os
from statgps_pipeline_variables import *
from statgps_functions import blast_xml_to_gff3
#-------------------------------------------------------------------------------------------
#----------------------------Command line parser and arguments------------------------------
... | mdeletto/STAT-GPS | ncRNA_Prediction.py | Python | unlicense | 6,573 | [
"BLAST"
] | d6c8d8924cdecbd65e18c7e60c78187b355ed3ec1f34c44ffa4719ed85154f01 |
# coding=utf-8
# Copyright 2014 Pants project contributors (see CONTRIBUTORS.md).
# Licensed under the Apache License, Version 2.0 (see LICENSE).
from __future__ import (absolute_import, division, generators, nested_scopes, print_function,
unicode_literals, with_statement)
from textwrap import... | sameerparekh/pants | tests/python/pants_test/targets/test_wiki_page.py | Python | apache-2.0 | 3,058 | [
"exciting"
] | c83a0d7e2a74ec89d15865c6ab5be5654f635d44285dcbf79191f1505e4fd122 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | symbolic_functionals/syfes/xc/mgga_test.py | Python | apache-2.0 | 5,291 | [
"PySCF"
] | b859ff7d5616810cf1a2707689f1a3eb5ec5a1560010a789f478f367678263f6 |
# -*- coding: utf-8 -*-
"""
These tests focus on testing collection of data
from the NHL via screen scraping.
Note that this site:
http://www.timeanddate.com/worldclock/converter.html
Can be useful for sanity checking times.
"""
import datetime
import unittest
from nhlstats import collect
class TestCollection(uni... | fancystats/nhlstats | tests/integration/collect_tests.py | Python | mit | 11,306 | [
"COLUMBUS"
] | 51e97d5cdc94161844e0f780e64661793a5591d88fa02c132d99af2f3e145fe7 |
#!/usr/bin/env python
import sys
sys.path.append("../")
import numpy as np
import pandas as pd
import scipy.io
from functions import *
from sklearn.decomposition import PCA
import _pickle as cPickle
import neuroseries as nts
import sys
import scipy.ndimage.filters as filters
from sklearn.mixture import GaussianMixtu... | gviejo/ThalamusPhysio | python/figure_article_v2/main_article_v2_fig_1.py | Python | gpl-3.0 | 33,608 | [
"Gaussian",
"NEURON"
] | ae4f772e75209a72cfebbf9e5dea6fe24e252363526b30b1fbb8830fb02f14fd |
"""
.. _tut_compute_covariance:
Computing a covariance matrix
=============================
Many methods in MNE, including source estimation and some classification
algorithms, require covariance estimations from the recordings.
In this tutorial we cover the basics of sensor covariance computations and
construct a no... | kambysese/mne-python | tutorials/source-modeling/plot_compute_covariance.py | Python | bsd-3-clause | 8,732 | [
"Gaussian"
] | 92e34af22ff47f33b882271da08e316200cf081b42425fed168123419d3e1e95 |
# Simple data fitting by a given function
# inputs: x,y: usual numpy arrays with coordinates for single curve
# p0: initial values of parameters
# fitf(): function to be fitted with: a Gaussian by default, but edit it to your needs
# outputs: popt: parameters of the ... | FilipDominec/plotcommander | my_snippets/analysis/curve_fit.py | Python | mit | 1,103 | [
"Gaussian"
] | 120dcbb6887f9ac8b893d4a9807a1cca2ac2194758b3abb00a09a71159f5fe2c |
from __future__ import absolute_import
import os
from openpathsampling.storage import Storage
import openpathsampling.engines.openmm as peng
try:
import mdtraj as md
except ImportError:
md = None
from .test_helpers import data_filename
def setup_package():
if not md:
return
# this should ge... | choderalab/openpathsampling | openpathsampling/tests/__init__.py | Python | lgpl-2.1 | 1,006 | [
"MDTraj",
"OpenMM"
] | 22af1b666940d90b6ee4a2e0902100a5e7f7256aa1833e35eb67f47bf024c2d3 |
# Orca
#
# Copyright 2004-2009 Sun Microsystems Inc.
# Copyright 2010-2013 The Orca Team
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your... | ruibarreira/linuxtrail | usr/lib/python3/dist-packages/orca/object_properties.py | Python | gpl-3.0 | 8,090 | [
"ORCA"
] | 37229198ba288e946b980476b1ae4200d40c7553db32dc039955b914e3e305d4 |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | mkuron/espresso | testsuite/scripts/tutorials/test_06-active_matter__flow_field.py | Python | gpl-3.0 | 1,394 | [
"ESPResSo",
"VTK"
] | 142b34aea455e970ed1463c8592a990bd1e7a92812c25e72902d2569b239fb09 |
from .nodes import NodeVisitor, NodeTransformer
from .compat import PY3
class Extractor(NodeVisitor):
def __init__(self):
self._messages = set([])
@classmethod
def extract(cls, node):
self = cls()
self.visit(node)
return list(self._messages)
def visit_string(self, no... | vmagamedov/kinko | kinko/i18n.py | Python | bsd-3-clause | 733 | [
"VisIt"
] | f62267b13c544abb69c6c305e46f83bddfc386b444ae14e7cc02c23492c1560d |
#
# Copyright 2014-2015, 2017, 2020-2021 Lars Pastewka (U. Freiburg)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GN... | libAtoms/matscipy | tests/test_ring_statistics.py | Python | lgpl-2.1 | 3,893 | [
"ASE",
"Matscipy"
] | c82bf2600a45d161b973b30838f2bb7e461af41c4c674087652c94db4e8e2a46 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Classes for reading/manipulating/writing VASP ouput files.
"""
import json
import glob
import itertools
import logging
import math
import os
import re
import warnings
from pathlib import Path
import xml.et... | mbkumar/pymatgen | pymatgen/io/vasp/outputs.py | Python | mit | 212,097 | [
"CRYSTAL",
"VASP",
"VisIt",
"Wannier90",
"pymatgen"
] | 4977cd77419f81af37e4f7a64eb05b7f50cdc0e8c50821d3bfb6f460a9ae9adb |
import numpy as np
import numpy.random as ra
from gpaw.setup import create_setup
from gpaw.xc.noncollinear import NonCollinearFunctional
from gpaw.xc import XC
from gpaw.test import equal
from gpaw.utilities import pack
x = 0.0000001
ra.seed(8)
for xc in ['LDA']:#, 'PBE']:
print xc
xc = XC(xc)
s = create_... | robwarm/gpaw-symm | gpaw/test/noncollinear/xccorr.py | Python | gpl-3.0 | 1,350 | [
"GPAW"
] | 539a530365fb98c8bdcc899fd007ffbe256cdf3cf1b7ef32b319f7101c25f08e |
import re
input_ = 'R4, R3, R5, L3, L5, R2, L2, R5, L2, R5, R5, R5, R1, R3, L2, L2, L1, R5, L3, R1, L2, R1, L3, L5, L1, R3, L4, R2, R4, L3, L1, R4, L4, R3, L5, L3, R188, R4, L1, R48, L5, R4, R71, R3, L2, R188, L3, R2, L3, R3, L5, L1, R1, L2, L4, L2, R5, L3, R3, R3, R4, L3, L4, R5, L4, L4, R3, R4, L4, R1, L3, L1, L1, R... | swistaq/aoc2016 | src/day1.py | Python | gpl-3.0 | 2,479 | [
"VisIt"
] | 441705aa707a7f08116fa1ac500fde6e5cd5109874825c9db47be052fb0b31de |
import sys
from time import time, ctime
import numpy as np
from math import sqrt, pi
from ase.units import Hartree, Bohr
from gpaw import GPAW, extra_parameters
from gpaw.utilities import unpack, devnull
from gpaw.utilities.blas import gemmdot, gemv, scal, axpy
from gpaw.mpi import world, rank, size, serial_comm
from g... | qsnake/gpaw | gpaw/response/base.py | Python | gpl-3.0 | 12,166 | [
"ASE",
"GPAW"
] | 08211fb77b08e8432ff6a1b6bfae842bc756a0bdbdea1638d922a93ac55eb5d1 |
"""
Tests for the Geckoboard decorators.
"""
import simplejson
from django.http import HttpRequest, HttpResponseForbidden
from django.utils.datastructures import SortedDict
from django_geckoboard.decorators import widget, number_widget, rag_widget, \
text_widget, pie_chart, line_chart, geck_o_meter, TEXT_NONE... | CashStar/django-geckoboard | django_geckoboard/tests/test_decorators.py | Python | mit | 14,444 | [
"Amber"
] | cfdbc36abea6801df298a1eed0508a4b7260eff79278325273ff29642ac8bed6 |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publi... | thica/ORCA-Remote | src/ORCA/utils/Platform/android/android_GetUserDataPath.py | Python | gpl-3.0 | 4,620 | [
"ORCA"
] | c1d683b613c2b34613b040ede7c794258ed80c06aac9f66c038d286111a8ddb1 |
#!/usr/bin/env python
# Helper for the getprocaddress.c test.
import sys, getopt, re, os
argc = len(sys.argv)
if (argc):
glapi_xml_path = sys.argv[1]
else:
glapi_xml_path = "../../src/mapi/glapi/gen/"
sys.path.append(glapi_xml_path)
import gl_XML
import license
def FindTestFunctions():
"""Scan getprocaddress... | execunix/vinos | xsrc/external/mit/mesa-demos/dist/src/tests/getprocaddress.py | Python | apache-2.0 | 2,088 | [
"Brian"
] | 15e46ca3356ee6ad5256821f7697b3fa515124a8c1bbf58b640ee64a7afd790b |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2013 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Software F... | andrebellafronte/stoq | plugins/optical/tests/test_optical_report.py | Python | gpl-2.0 | 3,323 | [
"VisIt"
] | 26afafeaaeb9f14dde041ee8f054d66413b2971ce31090bff892c8f9f174a684 |
__author__ = 'AT'
from GPy.util.linalg import mdot
import numpy as np
class MoG:
"""
A generic class for representing posterior distribution. MoG stands for mixture of Gaussians, and this class is
suitable when posterior is a mixture of Gaussians. The posterior distribution is as follows:
q(u) = \su... | adezfouli/savigp | GP/mog.py | Python | apache-2.0 | 7,239 | [
"Gaussian"
] | d9ba53ee3c8469f414a09eb4735df11f7f036964ae32326e6447e79e00b4c256 |
''''Classes to define abstractions on parameter exploration data.
Classes
-------
.. autosummary::
DataSpace
TrialSet
DummyTrialSet
JobTrialSpace2D
JobTrialSpace1D
'''
from __future__ import absolute_import
from collections import Sequence
from os.path import exists, basename
import sub... | MattNolanLab/ei-attractor | grid_cell_model/parameters/param_space.py | Python | gpl-3.0 | 24,893 | [
"VisIt"
] | 8443ecf170237e4964a508c02e015890113c99d4994402afffb9bfbd789d4d61 |
"""
@name: Modules/House/Entertainment/pioneer/pioneer.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2016-2019 by D. Brian Kimmel
@note: Created on Jul 10, 2016
@license: MIT License
@summary:
Control of pioneer home entertainment devices'.
First is an A/V receiver VSX-... | DBrianKimmel/PyHouse | Project/src/Modules/House/Entertainment/Pioneer/pioneer.py | Python | mit | 20,415 | [
"Brian"
] | 6ba745ebc55c4d183aa742ee69e73685e5de9740bd1685ab4b4901c35d3af09f |
#!/usr/bin/env python
"""
Clean a given production
Usage:
dirac-prod-clean prodID
Arguments:
prodID: Production ID (mandatory)
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import DIRAC
from DIRAC.Core.Base import Script
from ... | yujikato/DIRAC | src/DIRAC/ProductionSystem/scripts/dirac_prod_clean.py | Python | gpl-3.0 | 904 | [
"DIRAC"
] | c7877a478270cb1015933a51c9b2c143e0ba276280d1914d85f8075a9dc73c8d |
from collections import OrderedDict
import numpy as np
import robosuite.utils.transform_utils as T
from robosuite.environments.manipulation.two_arm_env import TwoArmEnv
from robosuite.models.arenas import TableArena
from robosuite.models.objects import PotWithHandlesObject
from robosuite.models.tasks import Manipulat... | ARISE-Initiative/robosuite | robosuite/environments/manipulation/two_arm_lift.py | Python | mit | 23,586 | [
"Gaussian"
] | 5202a7215fc6a519310381a901e95ed53c197e6f6adcd3fa5898c98e7452b4ea |
# Copyright (c) 2015 Ansible, Inc.
# All Rights Reserved.
# Python
import inspect
import logging
import time
import six
import urllib
# Django
from django.conf import settings
from django.db import connection
from django.db.models.fields import FieldDoesNotExist
from django.db.models.fields.related import OneToOneRel... | wwitzel3/awx | awx/api/generics.py | Python | apache-2.0 | 41,873 | [
"VisIt"
] | b9abcf39a0777cc777f0e1fe8bedacceebb03fad872fafa749d9d7555543198d |
# Authors : Denis A. Engemann <denis.engemann@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
#
# License : BSD 3-clause
from copy import deepcopy
import math
import numpy as np
from scipy import fftpack
# XXX explore cuda optimization at some point.
from ..io.pick import _pick_data_channels, ... | Teekuningas/mne-python | mne/time_frequency/_stockwell.py | Python | bsd-3-clause | 10,167 | [
"Gaussian"
] | 7121eda591b73af43c24b59d256f5396011c53c6c686e739ace8df82084b977b |
#!/usr/bin/python
#
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | apoorva-sharma/deep-frame-interpolation | msssim.py | Python | mit | 7,955 | [
"Gaussian"
] | 30d5ae6865c896153ec6646d922b241a1dce6525b0655ece29430a73eaebc60c |
# Version: 0.13+dev
"""
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/warner/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, and pypy
* [![Latest Version]
(https://pypip.in/version/versioneer/badge.svg?style=flat)
... | isislovecruft/txrecaptcha | versioneer.py | Python | bsd-3-clause | 40,002 | [
"Brian"
] | 1a557242cab430630647a46c21e08942d94f35da03b1aafa50751bb7da6f9a53 |
########################################################################
# File : IdProviderFactory.py
# Author : A.T.
########################################################################
""" The Identity Provider Factory instantiates IdProvider objects
according to their configuration
"""
import jwt
from... | DIRACGrid/DIRAC | src/DIRAC/Resources/IdProvider/IdProviderFactory.py | Python | gpl-3.0 | 4,086 | [
"DIRAC"
] | 7efdedb367d52c93b86b028505faed2a9d5e02030deed5349b546930977e60e6 |
import contextlib, unittest
from loady import whitelist
WHITELIST = [
['github.com', 'rec', 'swirly'],
['github.com', 'rec2'],
['github.com', ''], # Should have no effect.
['gitlab.com', 'rec3', 'forbidden'],
['gitlab.com', 'rec', 'swirly', '', ''], # Extra fields should be OK.
]
BAD_WHITELIST =... | timedata-org/gitty | test/loady/whitelist_test.py | Python | mit | 2,946 | [
"ASE"
] | 8075bd79d1c854dcb0933ecc3a14c09871746b65074d56d74bfae2024a312dcf |
# Copyright 2008-2015 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | fingeronthebutton/RIDE | src/robotide/lib/robot/result/executionresult.py | Python | apache-2.0 | 4,981 | [
"VisIt"
] | f4b85c2d300ecf8487f036ecfc5be12e7a61423884a8901e3e73386968055d5f |
# -*- coding: utf-8 -*-
# MD-Tracks is a trajectory analysis toolkit for molecular dynamics
# and monte carlo simulations.
# Copyright (C) 2007 - 2012 Toon Verstraelen <Toon.Verstraelen@UGent.be>, Center
# for Molecular Modeling (CMM), Ghent University, Ghent, Belgium; all rights
# reserved unless otherwise stated.
#
#... | molmod/md-tracks | test/test_commands.py | Python | gpl-3.0 | 90,036 | [
"CP2K",
"CPMD",
"DL_POLY",
"Gromacs",
"LAMMPS"
] | f1f24d88f982a8dc69d1ae590e7b5724f73bb86b38ce39d2be2402d17521b1c3 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | harterj/moose | modules/porous_flow/examples/multiapp_fracture_flow/diffusion_multiapp/plot_results.py | Python | lgpl-2.1 | 6,940 | [
"MOOSE"
] | b7ea9ff657e8f92a39e3392bd479d868356bf656f77c47829ad014e0223b87a3 |
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2015, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Public version 2.1 or later. You s... | ghutchis/cclib | test/data/skip.py | Python | lgpl-2.1 | 1,306 | [
"cclib"
] | cb579046bc10c1809e347344b7f64539b1a5a59e754aedcb909c8368a1b7eae4 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright 2013 The Plaso Project Authors.
# Please see the AUTHORS file for details on individual authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the L... | iwm911/plaso | plaso/parsers/opera.py | Python | apache-2.0 | 9,368 | [
"VisIt"
] | 6f408cdf3afda493cf3e5179b975f602d90afd7cfdb194e80d7236419b5a1049 |
#!/usr/bin/env python
import matplotlib.pyplot as plt
import numpy as np
# Use fonts that match LaTeX
from matplotlib import rcParams
rcParams['font.family'] = 'serif'
rcParams['font.size'] = 17
rcParams['font.serif'] = ['Computer Modern Roman']
rcParams['text.usetex'] = True
# Small font size for the legend
from mat... | mellis13/moose | test/tests/time_integrators/convergence/implicit_plot.py | Python | lgpl-2.1 | 5,535 | [
"MOOSE"
] | 161160e4856d2350354599ea345116e4bd6a33df187c73d90ba994f417d0a4c3 |
# -*- coding: utf-8 -*-
#@author: ilyass.tabiai@polymtl.ca
#@author: rolland.delorme@polymtl.ca
#@author: patrick.diehl@polymtl.ca
import yaml
import os.path
from . import geometry
import sys
from . import output
from ..util import condition
from . import vis
from . import dic
import numpy as np
## Class handeling the... | lm2-poly/peridynamics_1D | peripydic/IO/deck.py | Python | mit | 25,213 | [
"VTK"
] | 00f2ebab12b40aa88ce0c6bdb54686e94dca450f76b618d3afd665b776c64f9d |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi4/psi4 | psi4/driver/qcdb/basislist.py | Python | lgpl-3.0 | 8,527 | [
"Psi4"
] | cc076dc80162a6f2665c6e652675aca12585c1c18621edc873d07ed8703ff491 |
# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | Canpio/Paddle | python/paddle/fluid/layers/nn.py | Python | apache-2.0 | 155,394 | [
"NEURON"
] | 3d662cb154cd564021e0c0bdde01101aeddc0741f3210d1cdbbdbafdf7d44ace |
# -*- coding: UTF-8 -*-
__revision__ = '$Id$'
# Copyright (c) 2005-2013 Vasco Nunes, Piotr Ożarowski
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at... | marcin1j/griffith | lib/plugins/movie/PluginMovieIMDB.py | Python | gpl-2.0 | 16,086 | [
"Amber",
"Desmond"
] | 3500b6f25fdbf8ebae40c38a5ba0c95a0ff27f74961b6d1cdc975b27adcc5cdf |
import astropy.io.fits as fits
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as p
import numpy as n
import os
import sys
from scipy.stats import scoreatpercentile as sc
survey = sys.argv[1]
z_min, z_max = 0., 1.6
imfs = ["Chabrier_ELODIE_", "Chabrier_MILES_", "Chabrier_STELIB_", "Kroupa_ELODIE_", ... | JohanComparat/pySU | spm/bin_SMF/create_table_completeness.py | Python | cc0-1.0 | 9,615 | [
"Firefly",
"Galaxy"
] | 13d202c7077551a8b5a193ebc7680e627e3afa4c3a09edc07afabd29301a9d68 |
# -*- coding: utf-8 -*-
"""Utilities for serializing to BEL namespace and BEL annotation files."""
import logging
import os
from typing import Iterable, Mapping, Optional
from bel_resources import get_bel_resource, write_namespace
from pybel import BELGraph
from pybel.struct.summary.node_summary import get_names_by_... | pybel/pybel-tools | src/pybel_tools/definition_utils.py | Python | mit | 8,672 | [
"Pybel"
] | 17b6690e94e55cd84bd217032e0a610db0882234969557531d62214ae8789de6 |
# 1d Kalman filter
from math import *
def gaussian(mu, sigma2, x):
return (1/sqrt(2*pi*sigma2))*exp(-0.5*(x-mu)**2/sigma2)
def measureUpdate(mu1, sigma12,mu2, sigma22): #prior and measurement
mu = (mu1*sigma22+mu2*sigma12)/(sigma12+sigma22)
sigma2 = (sigma12*sigma22)/(sigma12+sigma22)
return [mu, si... | hongliuuuu/AutomobilePy | pythonC/GaussianK.py | Python | bsd-2-clause | 798 | [
"Gaussian"
] | 5cf554eda526de30d0851bdb8c16426e750568cd115f0b8309915a7138e7475a |
import unittest
import os
from stevedore.extension import ExtensionManager
ENGINES = [
'lammps',
'openfoam_file_io',
'openfoam_internal',
'kratos',
'jyulb_fileio_isothermal',
'jyulb_internal_isothermal',
'liggghts']
if os.getenv("HAVE_NUMERRIN", "no") == "yes":
ENGINES.append("numerr... | simphony/simphony-framework | tests/test_engine_import.py | Python | bsd-2-clause | 629 | [
"LAMMPS"
] | 413375360801c512014361f6f9ddb3f54394c28b3f4d86c06dd92a83ac425664 |
# coding: utf-8
from __future__ import division, unicode_literals
"""
Created on Mar 18, 2012
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Ping Ong"
__email__ = "shyue@mit.edu"
__date__ = "Mar 18, 2012"
import unittest
import ... | Dioptas/pymatgen | pymatgen/apps/borg/tests/test_hive.py | Python | mit | 4,690 | [
"pymatgen"
] | 1ab349e28edffc3e3cb89c19bdd7190de1a4ae8125d2653dbf41f1e44f8e2769 |
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'mainWindowBA.ui'
#
# Created: Fri May 8 09:14:50 2015
# by: PyQt4 UI code generator 4.10.4
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
try:
_fromUtf8 = QtCore.QString.fromUtf8
except A... | geckoblu/kang | kang/gui/mainWindowBA.py | Python | gpl-2.0 | 34,710 | [
"VisIt"
] | 7148ec6551063e827a20b22c97ea90e7c54a6c9204b65e68128d23d99aeb4551 |
#!/usr/bin/env python
# Copyright 2014-2016 OpenMarket Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | TribeMedia/synapse | contrib/cmdclient/console.py | Python | apache-2.0 | 28,986 | [
"VisIt"
] | f8614c412498d557cbba926ce334be005d98aa52aaed73575d33b1d559a4b7f1 |
#!/home/paulk/software/bin/python
from __future__ import division
from sys import argv,exit,stderr
from key_functions import *
import pysam
from cPickle import load
def count_incl2excl(jreads,exon,sd,exon_st,exon_sp,pexon_st,pexon_sp,nexon_st,nexon_sp,tally,read_reads):
for read in jreads:
if read.qname not in read... | polarise/RP-python | calcExonInclRate.py | Python | gpl-2.0 | 3,775 | [
"pysam"
] | 1c3e25d9318d74152a8ee326575632540ac33b03b2f2edc0d0b5a691a47ea85e |
#
# Copyright (c) 2000 Autonomous Zone Industries
# This file is licensed under the
# GNU Lesser General Public License v2.1.
# See the file COPYING or visit http://www.gnu.org/ for details.
#
import tripledescbc
x = tripledescbc.new("hegonugetonugetorgcronig")
iv = "oeugoteg"
plaintext = "this is a plaintext ... | zooko/egtp | common/crypto/Python/tripledescbctest.py | Python | agpl-3.0 | 721 | [
"VisIt"
] | 969813250dbc6b24b7251d8fe74bf8e1de5c07a76b9214291716c59077a78253 |
import requests
from bs4 import BeautifulSoup
import dryscrape
import urllib
import logging
from config import App
from profile_abc import ProfileABC
logging.basicConfig(format='%(message)s',level=logging.INFO) #,level=logging.DEBUG / WARNING , etc.
class SPB_Hotspot(ProfileABC):
def do_initial_login_page(s... | pmdscully/HHWAutoLogon | src/hotspot_profiles/spb_hotspot.py | Python | gpl-3.0 | 3,638 | [
"VisIt"
] | 560cf1236a267a56cc0c66981ba57fbfe38ef2791267a5517af585eee92c5d5e |
"""
Kernel SVM Classification of photometry
---------------------------------------
Figure 9.11
Kernel SVM applied to the RR Lyrae data (see caption of figure 9.3 for
details). This example uses a Gaussian kernel with gamma = 20. With all four
colors, kernel SVM achieves a completeness of 1.0 and a contamination of 0.... | eramirem/astroML | book_figures/chapter9/fig_rrlyrae_kernelsvm.py | Python | bsd-2-clause | 4,615 | [
"Gaussian"
] | b69d9edec09bf763afbf568cafd59ad1dd4c2ec6a383500eeec65b7b426aec8e |
import numpy as np
from math import pi, sqrt
import os, fitsio
def skyAngle(ra, dec, ra_ref, dec_ref):
# CAUTION: this needs to be a pseudo-Cartesian coordinate frame
# (not pure RA/DEC), otherwise angles are skewed
return np.arctan2(dec-dec_ref, (ra-ra_ref)*np.cos(dec*pi/180))
def skyDistance(ra, dec, ra... | pmelchior/shear-stacking | shear_stacking.py | Python | mit | 16,172 | [
"Gaussian"
] | 20bf68c73ff78de50286e989ead6bcaf2443b6b067183594b3ab9aa5122e9a06 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | holdenk/spark | python/pyspark/ml/classification.py | Python | apache-2.0 | 127,312 | [
"Gaussian"
] | fedb5db49f9c9c38d616c43eefad909be03338b24f0ec2f0e187ca34dd0907d1 |
../../../../share/pyshared/orca/structural_navigation.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/structural_navigation.py | Python | gpl-3.0 | 56 | [
"ORCA"
] | df0a73a3b0bc6fb858c929f5e7286227655f576786ff0a13a227715b877d5d80 |
# coding: utf-8
"""
MINDBODY Public API
No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501
OpenAPI spec version: v6
Generated by: https://github.com/swagger-api/swagger-codegen.git
"""
import pprint
import re # noqa: F401
impor... | mindbody/API-Examples | SDKs/Python/swagger_client/models/model_class.py | Python | bsd-2-clause | 27,776 | [
"VisIt"
] | 947005e76a4f8a3f1ed01e4931eb9eb2b8da91a7379821a4917188cc51e3c2c5 |
__author__ = 'Tina'
from pymatgen.core.structure import Structure
import connectivity_from_structure as connectivity
import unittest
class TestConnectivity(unittest.TestCase):
def setUp(self):
"""Loading structures before tests"""
#print "TestConnectivityMethods:setUp_"
print "Loading st... | tchen0965/structural_descriptors_repo | examples/connectivity_test.py | Python | mit | 11,683 | [
"pymatgen"
] | 2a63876bbd864e59c1ae522001e162ac6895f9bea9b78e65bd1dbda049daf9c3 |
#-*- coding: utf-8 -*-
#! /usr/bin/env python
'''
#------------------------------------------------------------
filename: lab6_runTFMultiANN_MNIST.py
A 2-Hidden Layers Fully Connected Neural Network implementation with TensorFlow.
This example is using the MNIST database
of handwritten digits (http://y... | jwkanggist/EveryBodyTensorFlow | lab6_runTFMultiANN_MNIST.py | Python | unlicense | 3,775 | [
"NEURON"
] | a2742034cf20f862d7342f20b284e37f0c1133d135a5cc87a793b0cc6e50651f |
#!/usr/bin/env python
import Pyro5
import threading
import time as timeT
import sys
import os
sys.path.extend(['..', '../..'])
from mupif import *
import logging
log = logging.getLogger()
start = timeT.time()
log.info('Timer started')
import mupif as mp
class Example08(workflow.Workflow):
def __init__(self, ... | mupif/mupif | examples/Example08-transiTM-JobMan-distrib/Example08.py | Python | lgpl-3.0 | 6,037 | [
"VTK"
] | 00fdc8a87ac0e4e26ea7c3ab3c65865f2be0cadf4444ce31b05ff5e8a7aa8d95 |
#!/usr/bin/env python
from peacock.utils import Testing
class TestChangeInputFile(Testing.PeacockAppImageTestCase):
"""
Tests that if the input file changes the VTKWindow is reset.
"""
def testInputReset(self):
"""
Test that changing the input file resets the VTK window correctly.
... | backmari/moose | python/peacock/tests/peacock_app/check_change_input_file/test_ChangeInputFile.py | Python | lgpl-2.1 | 2,262 | [
"VTK"
] | ac1fac1034fe423247742c88d240683da73f277d97674e8187b2862ed03006bc |
#! /usr/bin/env python
"""
PySCeS MDL Parser
=================
The PySCeS parser is used to import a model written in the MDL of PySCeS. Further, all required input do to stochastic simulations is build.
Written by T.R. Maarleveld, Amsterdam, The Netherlands
E-mail: tmd200@users.sourceforge.net
Last Change: August 06,... | SystemsBioinformatics/stochpy | stochpy/modules/PyscesMiniModel.py | Python | gpl-3.0 | 50,473 | [
"PySCeS"
] | 29d37fe95ab1a985b92338baaa76659647d7514c6ad8ac3b946459d1215e2237 |
#!/usr/bin/env python
"""
Calculate ejection velocity distribution
Use Wiegert (2014) Formalism
Citation: https://arxiv.org/pdf/1404.2159.pdf
"""
import numpy as np
from scipy.stats import norm as gaussian
#############################################################
#MACROS AND BEHAVIOR
##########################... | seap-udea/interstellar | ejection-many.py | Python | gpl-3.0 | 5,903 | [
"Gaussian"
] | afa0612891714bddf5fcc5727216c825e7c48d931ac10971909dcf6dfd603f03 |
#this python script first creates a neighborlist of atoms using Periodic CKDTree search
#next one can get the Qn distribution of a Si-O-Al network or Si-O-Si network using this script
#Author: Mohammad Rafat Sadat, Dept. of CEEM University of Arizona
#Date: 3.31.17
from periodic_kdtree import PeriodicCKDTree
import nu... | msadat/python-scripts | Qn_distrib_periodic_kdtree_V1.0.py | Python | gpl-3.0 | 9,117 | [
"LAMMPS"
] | 5c3dca1546754caa15f2c3ceadbd08e7827b07caad7bcc88235674bcaea5c208 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | KaiSzuttor/espresso | testsuite/python/icc.py | Python | gpl-3.0 | 3,720 | [
"ESPResSo"
] | 1d987b5c02e21feb99e51ac239676f0ae58a7f7452c8340daccb66f15c9d47ef |
from paraview.servermanager import vtkProcessModule
pvoptions = vtkProcessModule.GetProcessModule().GetOptions()
if pvoptions.GetSymmetricMPIMode() == False:
print "ERROR: Please run ParaView in SymmetricMPI mode."
import sys
sys.exit(1)
from mpi4py import MPI
comm = MPI.COMM_WORLD
rank = comm.Get_rank()
... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/ParaViewCore/ServerManager/Default/Testing/Python/TestMPI4PY.py | Python | gpl-3.0 | 479 | [
"ParaView"
] | 5da0c4a68c6a81918e86be781524deb885cef0687291a9eacc84829e3e0f4f51 |
##
# Copyright 2013-2021 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | hpcugent/easybuild-easyblocks | easybuild/easyblocks/g/gromacs.py | Python | gpl-2.0 | 34,321 | [
"Gromacs"
] | c7dff395a41fa6779e8303ca0edd98cb0f2ac038ff408a36fc579c92e3d5ffcd |
import numpy as np
import pandas as pd
import math
import random as r
import astropy.units as u
from astropy.stats import LombScargle
from scipy.signal import lombscargle
from scipy.interpolate import interp1d
from scipy.fftpack import fft, fftfreq, fftshift
from scipy.stats import chisquare
from scipy.optimize impo... | tboudreaux/astroSynth | astroSynth/SDM.py | Python | mit | 17,999 | [
"VisIt"
] | d2fe0d1233c867123ffc78ee6add66d62c42e85763e8685b63a77ec3a31d6cc3 |
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