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#Main GWR classes
#Offset does not yet do anyhting and needs to be implemented
__author__ = "Taylor Oshan Tayoshan@gmail.com"
import numpy as np
import numpy.linalg as la
from scipy.stats import t
from kernels import *
from diagnostics import get_AIC, get_AICc, get_BIC
import pysal.spreg.user_output as USER
from cra... | CartoDB/crankshaft | release/python/0.8.2/crankshaft/crankshaft/regression/gwr/base/gwr.py | Python | bsd-3-clause | 39,271 | [
"Gaussian"
] | 80abd0451b98f549324b78d61ddbaa3adea6a5ee5cb684bb9a1a020bdbdf10fc |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | gunan/tensorflow | tensorflow/python/tpu/device_assignment.py | Python | apache-2.0 | 19,865 | [
"VisIt"
] | 16b43c18fad01b884bb5c68410f3ebe86610d3865b0b7723552958b3089cfbde |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/zoo/chronos/examples/auto_model/autoprophet_nyc_taxi.py | Python | apache-2.0 | 3,730 | [
"ORCA"
] | b35c6fb52acac90e07b9fcd773c3ff59e1d69676ed6809ee11d2e199bc0629fc |
from __future__ import division
import abc
import numpy as np
from copy import deepcopy
from menpo.landmark import LandmarkGroup
from menpo.transform .affine import \
Scale, SimilarityTransform, AffineTransform
from menpo.transform.modeldriven import OrthoMDTransform, ModelDrivenTransform
from menpo.lucaskanade.res... | karla3jo/menpo-old | menpo/aam/fitter.py | Python | bsd-3-clause | 24,957 | [
"Gaussian"
] | fdad807b1bcf08d6da5880b779899693af66e010eea2a1e8bbe93f4915e8057e |
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
'''Base types for nodes in a GRIT resource tree.
'''
from __future__ import print_function
import ast
import os
import struct
import sys
from xml.sax i... | chromium/chromium | tools/grit/grit/node/base.py | Python | bsd-3-clause | 25,049 | [
"xTB"
] | 1cacef87afcb9c87fd8397d8fb326a6511035b2e7ab32cfa58b6171637b6955d |
#Copyright ReportLab Europe Ltd. 2000-2012
#see license.txt for license details
#history http://www.reportlab.co.uk/cgi-bin/viewcvs.cgi/public/reportlab/trunk/reportlab/platypus/paraparser.py
__version__=''' $Id$ '''
__doc__='''The parser used to process markup within paragraphs'''
import string
import re
import sys
im... | danimajo/pineapple_pdf | reportlab/platypus/paraparser.py | Python | mit | 45,447 | [
"VisIt"
] | a930175ccab789850e4085978187b4025a4734316927dac910cd31ffcd0abe78 |
# -*- coding: utf-8 -*-
"""
This module contains an `ApiAdapter` abstract class that acts as an adapter
for different Twitter API implementations.
It also contains `AsyncApi`, an asynchronous wrapper to `ApiAdapter` and a
function to authorize `turses` to use a Twitter account obtaining the OAuth
tokens.
"""
from ab... | battlemidget/turses | turses/api/base.py | Python | gpl-3.0 | 9,087 | [
"VisIt"
] | 583de2c5dc01e493022bc937e7ee7a24457aeefab4f9d4374201cb28f40760fe |
#!/usr/bin/python
# coding: utf-8
import os
import argparse
import getpass
from deploy import (
prompt, confirm, config_path,
create_virtualenv, install_requirements,
create_env_file, create_user_config_file,
delete_common_files, logger,
setup_npm_tools,
)
from deploy.settings import ENV_FILE, PR... | asyncee/django-project-template | bootstrap.py | Python | mit | 2,194 | [
"GULP"
] | dd058adae728a14b6f4acccc5cd271d18291773856872d23a16a335510717821 |
from __future__ import division
import numpy as np
import scipy
import scipy.signal
import scipy.optimize
import scipy.special
from scipy.misc import factorial
__all__ = ['Morlet', 'Paul', 'DOG', 'Ricker', 'Marr', 'Mexican_hat']
class Morlet(object):
def __init__(self, w0=6):
"""w0 is the nondimensional... | jeepsterboy/waveletanalysis | wavelets/wavelets.py | Python | mit | 10,144 | [
"Gaussian"
] | e13e6e0436ffe4ae7d4851e0b6c3d1565e5016bf0878b3553c585f1851cb623b |
import sys
import os
import re
from PyQt4 import QtGui, QtCore
from Extensions.Dictionary import Dictionary
from Extensions.Preferences import Preferences
old_books = ["Genesis", "Exodus", "Leviticus", "Numbers", "Deuteronomy",
"Joshua", "Judges", "Ruth", "1 Samuel", "2 Samuel",
"1 Kings", "2... | fortharris/SpiritMeal | SpiritMeal.py | Python | gpl-3.0 | 34,730 | [
"VisIt"
] | 9d5198693e507d1bb3cb482407bb31cb261538a08ca953e09134f310c66411b3 |
from __future__ import print_function, division
import os
import random
import h5py
import numpy as np
from astropy.table import Table
from .. import voronoi_helpers as vh
from ..voronoi_grid import VoronoiGrid
DATA = os.path.join(os.path.dirname(__file__), 'data')
# Helper functions.
# Check that all non-wall ... | hyperion-rt/hyperion | hyperion/grid/tests/test_voronoi.py | Python | bsd-2-clause | 3,944 | [
"Gaussian"
] | 1a4e44942f9af99ce3c5c6e7237462b724217b76250d9aae0277ad65fc428529 |
"""
Feature overview
================
With kmos you can:
* easily create and modify kMC models through GUI
* store and exchange kMC models through XML
* generate fast, platform independent, self-contained code [#code]_
* run kMC models through GUI or python bindings
kmos has been developed in the cont... | mhoffman/kmos | kmos/__init__.py | Python | gpl-3.0 | 5,846 | [
"ASE"
] | 0221a712eb68dbea0efffce07f22d4dc2e0f9c1e70579240431591a41081e604 |
__all__ = ['Lattice1d', 'cell_structures']
from scipy.sparse import (csr_matrix)
from qutip import (Qobj, tensor, basis, qeye, isherm, sigmax, sigmay, sigmaz)
import numpy as np
try:
import matplotlib.pyplot as plt
except:
pass
def cell_structures(val_s=None, val_t=None, val_u=None):
"""
Returns tw... | cgranade/qutip | qutip/lattice.py | Python | bsd-3-clause | 50,788 | [
"CRYSTAL"
] | eb0eb796d9fb40829446d3141da93e42c439cf72e556bb0632ac03d37ba1b23b |
import catmap
from catmap import ReactionModelWrapper
from catmap.model import ReactionModel
from catmap import string2symbols
IdealGasThermo = catmap.IdealGasThermo
HarmonicThermo = catmap.HarmonicThermo
molecule = catmap.molecule
np = catmap.np
copy = catmap.copy
class ThermoCorrections(ReactionModelWrapper):
""... | rybrogaard/catmap | catmap/thermodynamics/enthalpy_entropy.py | Python | gpl-3.0 | 21,470 | [
"ASE"
] | df87d8b26996a3bf68a41b07ab7f8bcacf421f2f24f9300991d3036c5ddbc7de |
# J. Pocahontas Olson June 2016
# Fibonacci generator
import fibonacci_module as fb # Custom module made for this project
import math # Math functions (log, pow, sqrt, etc.)
import matplotlib.pyplot as plt # Plotting
plt.style.use('ggplot')
import pylab
from scipy.optimize imp... | Aturen/Fibonacci | fibonacci.py | Python | apache-2.0 | 13,274 | [
"Gaussian"
] | 5690580948225705317cfa3e86c673e19d1824091a590c08a83cc2b9c00e5c82 |
#!/usr/bin/env python
########################################################################
# File : dirac-install-web-portal
# Author : Ricardo Graciani
########################################################################
"""
Do the initial installation of a DIRAC Web portal
"""
__RCSID__ = "$Id$"
#
from DI... | petricm/DIRAC | Core/scripts/dirac-install-web-portal.py | Python | gpl-3.0 | 1,001 | [
"DIRAC"
] | 555bd8729f985d3e40ffb680b72ab60a0d74e4fa6d338c2e205950d91e4bf900 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import re
import pytest
import spack.repo
from spack.cmd.url import name_parsed_correctly, url_summary, version_parsed_co... | LLNL/spack | lib/spack/spack/test/cmd/url.py | Python | lgpl-2.1 | 5,839 | [
"NetCDF"
] | 3b4377bb3437823c5c51cf9a24e4e606df058c9b740765675f03528b865e7d0a |
# Zulip Settings intended to be set by a system administrator.
#
# See http://zulip.readthedocs.io/en/latest/settings.html for
# detailed technical documentation on the Zulip settings system.
#
### MANDATORY SETTINGS
#
# These settings MUST be set in production. In a development environment,
# sensible default values w... | AZtheAsian/zulip | zproject/prod_settings_template.py | Python | apache-2.0 | 16,883 | [
"VisIt"
] | 2cd0d69f35bc57eb1e7b916d826c2286c08bfdb0e04f8f5ff2c4d81570e9fb02 |
# -*- coding: utf-8 -*-
## Description: class ChannelML for loading ChannelML from file or xml element into MOOSE
## Version 1.0 by Aditya Gilra, NCBS, Bangalore, India, 2011 for serial MOOSE
## Version 1.5 by Niraj Dudani, NCBS, Bangalore, India, 2012, ported to parallel MOOSE
## Version 1.6 by Aditya Gilra, NCBS, Ban... | dilawar/moose-core | python/moose/neuroml/ChannelML.py | Python | gpl-3.0 | 28,790 | [
"MOOSE"
] | f331dd9a3b30d81c5bd74035c4a8cd1b60d621bf800ffbf9aeac742fa86700ea |
import collections
import gc
import itertools
import os
import sys
import tarfile
import numpy as np
from numpy.lib import recfunctions as nprf
from scipy.stats import mstats
import libio
#==============================================================================
# General-purpose MCMC diagnostic and summarizati... | awblocker/cplate | lib/cplate/summarise_mcmc.py | Python | apache-2.0 | 44,220 | [
"Gaussian"
] | df5110aa0d23518a960ddbff8dbb0609aa739449da4726902d1ca4368ab445a2 |
# -*- coding: utf-8 -*-
"""
Created on Fri Jan 23 13:16:53 2015
@author: casey
"""
import praw
import csv
import time
import os
phrase_dict = {
' Extract revenge' : 'exact revenge',
' Nip it in the butt' : 'nip it in the bud',
' I could care less' : 'I couldn\'t care less',
' One in the same' : 'on... | monstermudder78/RedditScraper | reddit_scraper.py | Python | mit | 3,475 | [
"ESPResSo"
] | 0fbaa64e0471febba4dc7635c863670aba3829a80922282edbdab6a27eb34f36 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007-2012 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2009-2010 Craig J. Anderson
# Copyright (C) 2014 Paul Franklin
#
# This program is free software; you can redistr... | prculley/gramps | gramps/plugins/drawreport/descendtree.py | Python | gpl-2.0 | 69,406 | [
"Brian"
] | 21d8db6a388d0079d9297213e2bfbe2a9acdde7317d59854c674dba09db5c8d0 |
#!/usr/bin/env python
__description__ = \
"""
Takes set of output files from calc_hbond.tcl and generates an R-readable file
describing hydrogen bonds over all trajectories.
"""
__author__ = "Michael J. Harms"
__date__ = "080506"
__usage__ = "calcHbondProcessor.py vmd_output_dir"
import sys, os
def mergeAtoms(atom_li... | harmsm/md-analysis-tools | hbond-counter/hbond-counter.py | Python | unlicense | 4,532 | [
"VMD"
] | 0da202e9de5ad3a5c4611a21b86d33287a5cd9a93096a4de2cabe6b6fc1f1e6a |
#coding:utf8
'''
Created on 2013-7-31
@author: lan (www.9miao.com)
'''
from firefly.dbentrust.dbpool import dbpool
from firefly.dbentrust.madminanager import MAdminManager
from firefly.dbentrust import mmode
from firefly.dbentrust.memclient import mclient
import time
if __name__=="__main__":
# CREATE TABLE... | yangdw/PyRepo | src/annotation/Firefly/firefly/test/test_dbentrust.py | Python | mit | 1,250 | [
"Firefly"
] | 166eda1925f5ab8533d7b2bc439942e5030e860ad9f4b16a41d49c5864b62f94 |
"""
blackjack.py (author: Anson Wong / git: ankonzoid)
Solving the game of blackjack (no-usable ace, dealing with replacement).
The learning method is Monte Carlo Exploring Starts with reward sample averaging.
Refer to Chapter 5 (Monte Carlo Methods) of Richard Sutton's "Reinforcement Learning:
An Introducion... | ankonzoid/Deep-Reinforcement-Learning-Tutorials | classical_RL/blackjack/blackjack.py | Python | mit | 8,313 | [
"VisIt"
] | 718deea2a77bc5e453ddf8521f3ab265260c6be1af986b6e315139f10abf0fc7 |
from __future__ import unicode_literals
import unittest
import os
import json
from io import open
from pymatgen.phonon.bandstructure import PhononBandStructure, PhononBandStructureSymmLine
from pymatgen.util.testing import PymatgenTest
test_dir = os.path.join(os.path.dirname(__file__), "..", "..", "..",
... | xhqu1981/pymatgen | pymatgen/phonon/tests/test_bandstructure.py | Python | mit | 3,273 | [
"pymatgen"
] | f5d72aea2157083b9bb5578d54f1c28d7e050c38f1caa7385a11ddc2984c6d75 |
#
# Copyright (c) 2009-2015, Jack Poulson
# All rights reserved.
#
# This file is part of Elemental and is under the BSD 2-Clause License,
# which can be found in the LICENSE file in the root directory, or at
# http://opensource.org/licenses/BSD-2-Clause
#
import El, time
# TODO: Add noise so that the soft marg... | sg0/Elemental | examples/interface/SVMDense.py | Python | bsd-3-clause | 2,917 | [
"Gaussian"
] | da8e1b2623a0ca40e7988eb0f4e92339dbdf2f57852c9fbca4810076871b90cc |
#!/usr/bin/python
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2012-2013 Jonathan Topf, Jupiter Jazz Limited
# Copyright (c) 2014-2015 Jonathan Topf, The appleseedhq Organizati... | Vertexwahn/appleseed | scripts/rendernode.py | Python | mit | 17,978 | [
"VisIt"
] | 4aebfd38d1e6d003a2af6fab5d431e3606ef8e931adde29044984e760f3c1039 |
# -*- coding: utf-8 -*-
import os
# find the inverse of a matrix using Gaussian elimination
import numpy
def inverse(AInput):
""" return the inverse of AInput """
A = AInput.copy()
N = len(A[:, 0])
# A is square, with each dimension of length N
if not (A.shape[0] == A.shape[1]):
prin... | NicovincX2/Python-3.5 | Algèbre/Algèbre linéaire/Matrice/Matrice inversible/inverseGauss1.py | Python | gpl-3.0 | 2,966 | [
"Gaussian"
] | 4c271119ee561f982b7607bec7bcf9ff6fa5962a941addfa7f82acc85e405511 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/Quaternion.py | Python | gpl-3.0 | 7,887 | [
"ESPResSo"
] | 999afce9f9212e0ba6b6388fa8221157621d2ba30e2d369d4977e989dbd10703 |
import pysal as ps
import numpy as np
import multiprocessing as mp
import time
from decomp_binning import binning, binning_map
sf = ps.open(ps.examples.get_path("nat.shp"))
#sf = ps.open(ps.examples.get_path("columbus.shp"))
#sf = ps.open(ps.examples.get_path("sids2.shp"))
bb = sf.bbox
ncpus = mp.cpu_count()
w = (bb... | pysal/pPysal | weights/contiguity_decomp_binning_mapasync.py | Python | bsd-3-clause | 2,532 | [
"COLUMBUS"
] | a8dc131d11bdbe01785790407bc6c406c06f2978c0d879d4960978f91a4a4e0d |
import numpy as np
import pandas as pd
import random
from sklearn.preprocessing import MinMaxScaler
from copy import deepcopy
from graphviz import Digraph
import pydotplus
import timeit
from tqdm import tqdm
#---------------------------------------------------------------------------------------------
def initializat... | mmoradik/PANNET | Utils_cv.py | Python | mit | 24,461 | [
"NEURON"
] | 0cd504a936d7e0eefbc6aceea7aca5e2a90a873df119d5117ff5c993f1ff6f4b |
import json
import unittest
from aptos import primitive
from aptos.visitor import ValidationVisitor
class StringTestCase(unittest.TestCase):
def runTest(self):
schema = json.loads('''
{
"type": "string",
"maxLength": 3
}
''')
string... | pennsignals/aptos | tests/test_validation.py | Python | apache-2.0 | 10,188 | [
"Amber"
] | 808b1bb92af394a8e059dddebb5338edf4cdc9cb44e9e2d101a565b1cde18aa1 |
# Standard scientific modules:
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
from mpl_toolkits.basemap import Basemap
import xarray as xray
# My modules:
import atmos as atm
# ----------------------------------------------------------------------
# Read data from netcdf and unpack
miss = u'm... | jenfly/atmos-tools | scripts/ncep2_prep.py | Python | mit | 5,755 | [
"NetCDF"
] | 1f211416b934dca3ae64c95110e53b59c42cf0e8f57f51efa79d934d91fc0693 |
# This file is part of PyEMMA.
#
# Copyright (c) 2015, 2014 Computational Molecular Biology Group, Freie Universitaet Berlin (GER)
#
# PyEMMA is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either versi... | markovmodel/PyEMMA | pyemma/coordinates/clustering/tests/test_kmeans.py | Python | lgpl-3.0 | 20,252 | [
"MDTraj"
] | 265e593ca835f1426e4784dc41c380d2a78a9660e45db7e10577b4e42c1d8eb5 |
# Copyright (c) 2010 Howard Hughes Medical Institute.
# All rights reserved.
# Use is subject to Janelia Farm Research Campus Software Copyright 1.1 license terms.
# http://license.janelia.org/license/jfrc_copyright_1_1.html
from display.layout import Layout
from math import sqrt
import numpy as N
class ForceDire... | JaneliaSciComp/Neuroptikon | Source/Layouts/force_directed.py | Python | bsd-3-clause | 8,263 | [
"NEURON"
] | ba3885fd24a770b088828b82e7d111a32172bc8fddfd349b8ca4ad9a33f24227 |
"""Test JIDT estimators.
This module provides unit tests for JIDT estimators.
Unit tests are adapted from the JIDT demos:
https://github.com/jlizier/jidt/raw/master/demos/python/
"""
import pytest
import random as rn
import numpy as np
from scipy.special import digamma
from idtxl.estimators_jidt import (JidtKrask... | pwollstadt/IDTxl | test/test_estimators_jidt.py | Python | gpl-3.0 | 35,227 | [
"Gaussian"
] | 964e857d14199c9fe42e20aef58331f54a7d1c8c82bfb61e0f5194c4bd5bf658 |
""" An estimator for a single multivariate latent factor. """
__all__ = ["SingleLatentFactorEstimator"]
import logging
import numpy as np
import scipy.optimize as op
from . import estimator
logger = logging.getLogger(__name__)
def _log_prior(sigma, a):
r"""
Return the natural logarithm of the prior.
... | andycasey/snob | snob/slf.py | Python | mit | 12,143 | [
"Gaussian"
] | dc6d95d08c9509b659481b8b8089bae2e53fc2b5a666be2f341460ae86931d62 |
from nose.tools import *
from nose.plugins.attrib import attr
import json
import shutil
import os
import tempfile
import logging
import copy
import stat
import time
from mock import patch
from optparse import OptionParser
from biomaj.bank import Bank
from biomaj.session import Session
from biomaj.workflow import W... | horkko/biomaj-postgres | tests/biomaj_tests.py | Python | agpl-3.0 | 41,673 | [
"BLAST"
] | ebe87762d7578586b843e1ebc79bd3fdfb6bd49122de853ec7b78a30652c0883 |
from unittest import mock
import sys
import numpy as np
import dask.array as da
from numpy.testing import assert_array_equal, assert_almost_equal
import pytest
import numpy.testing as nt
from hyperspy import signals
from hyperspy.decorators import lazifyTestClass
from hyperspy.signal_tools import SpikesRemoval
from h... | francisco-dlp/hyperspy | hyperspy/tests/signal/test_tools.py | Python | gpl-3.0 | 45,642 | [
"Gaussian"
] | 930d02a89cbc8b305f433a194ede3623b4d9e4efe495b94cb6c5ff1a4f5afbf6 |
# Python test set -- part 1, grammar.
# This just tests whether the parser accepts them all.
# NOTE: When you run this test as a script from the command line, you
# get warnings about certain hex/oct constants. Since those are
# issued by the parser, you can't suppress them by adding a
# filterwarnings() call to this... | tree-sitter/tree-sitter-python | examples/python2-grammar.py | Python | mit | 30,981 | [
"GULP"
] | 5008d0357851f744321f0ec3e8c6568214d5dd88e251c9a861ad533b1557d92a |
""" :mod: DErrno
==========================
.. module: DErrno
:synopsis: Error list and utilities for handling errors in DIRAC
This module contains list of errors that can be encountered in DIRAC.
It complements the errno module of python.
It also contains utilities to manipulate these err... | arrabito/DIRAC | Core/Utilities/DErrno.py | Python | gpl-3.0 | 11,716 | [
"DIRAC"
] | fdc02456f151bc3bf4d1096ec8804183d2262d2567df0e32c553fdcb82d01e0f |
from behave import *
use_step_matcher("parse")
@when('I list groups')
def step_impl(context):
context.browser.visit(context.get_url('musicseaapp:group_list'))
@then('I\'m viewing a list containing')
def step_impl(context):
group_links = context.browser.find_by_css('div#content ul li a')
for i, row in enu... | julio77nz/MusicSea | musicsea/features/steps/list_groups.py | Python | gpl-3.0 | 545 | [
"VisIt"
] | 1ad090e448cc1f405362d78d8c4353af23f9e9f7ad64936f9ee2d85eed4ab908 |
#!/usr/bin/env python -i
# preceding line should have path for Python on your machine
# vizplotgui_pymol.py
# Purpose: viz running LAMMPS simulation via PyMol with plot and GUI
# Syntax: vizplotgui_pymol.py in.lammps Nfreq compute-ID
# in.lammps = LAMMPS input script
# Nfreq = plot data point and vi... | Pakketeretet2/lammps | python/examples/vizplotgui_pymol.py | Python | gpl-2.0 | 4,488 | [
"LAMMPS",
"PyMOL"
] | 48af40c258e92b44a21900ff6a793281258c22803c72e9bbbb735b9177619dff |
########################################################################
# $Id$
########################################################################
""" DIRAC FileCatalog Database """
__RCSID__ = "$Id$"
from DIRAC import gLogger, S_OK, S_ERROR
fr... | calancha/DIRAC | DataManagementSystem/DB/FileCatalogDB.py | Python | gpl-3.0 | 33,800 | [
"DIRAC"
] | eebadd899858d8669d80d22b03f74e295e8ad7743fd2b4fd0be216a6cea00af0 |
import pytest
from .addons import using
from .utils import *
import math
import numpy as np
import qcelemental as qcel
import psi4
from psi4.driver import qcdb
pytestmark = pytest.mark.quick
def hide_test_xtpl_fn_fn_error():
psi4.geometry('He')
with pytest.raises(psi4.UpgradeHelper) as e:
psi4.en... | lothian/psi4 | tests/pytests/test_misc.py | Python | lgpl-3.0 | 4,285 | [
"Psi4"
] | 9487a7b919bbcd93cd9b1109d3ad6d012decb4e83b9c1f61d1ed3d38ae86bd8c |
""" PilotsLoggingDB class is a front-end to the Pilots Logging Database.
This database keeps track of all the submitted grid pilot jobs.
It also registers the mapping of the DIRAC jobs to the pilot
agents.
Available methods are:
addPilotsLogging()
getPilotsLogging()
deletePilotsLoggin()
"... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/DB/PilotsLoggingDB.py | Python | gpl-3.0 | 7,224 | [
"DIRAC"
] | 787d135fd861ea383e72b06dc0360c3314e104e8193bb3f754881d3d430095a0 |
"""
spells.py
Python recipes to solve frequently requested tasks with Stimfit.
You can find a complete description of these functions in the
Stimfit online documentation (http://www.stimfit.org/doc/sphinx/index.html)
Check "The Stimfit Book of Spells" for details.
Authors: Jose Guzman, Alois Schloegl and Christoph S... | JoseGuzman/stimfit | src/stimfit/py/spells.py | Python | gpl-2.0 | 18,106 | [
"NEURON"
] | 153cb23e280889c0d1b02221312fb769da506d6bc483474e9e7ffe7672df4947 |
#!/usr/bin/env python
'''
@author Luke Campbell <My email is around here somewhere>
@file ion/processes/data/transforms/qc_post_processing.py
@date Tue May 7 15:34:54 EDT 2013
'''
from pyon.core.exception import BadRequest
from pyon.ion.process import ImmediateProcess, SimpleProcess
from interface.services.dm.idata_r... | ooici/coi-services | ion/processes/data/upload/upload_data_processing.py | Python | bsd-2-clause | 7,397 | [
"NetCDF"
] | 8cb780dc756ab9e5f0fe6bce85ac56fb681e509940b88a984fa30b2eba161313 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/r-affycontam/package.py | Python | lgpl-2.1 | 1,786 | [
"Bioconductor"
] | 26d7b75c8d010db7555174d66adbb73722881cb8fee586d8d0720848a812c0f8 |
## Automatically adapted for numpy.oldnumeric May 17, 2011 by -c
# Natural Language Toolkit: Feature Structures
#
# Copyright (C) 2003 University of Pennsylvania
# Author: Edward Loper <edloper@gradient.cis.upenn.edu>,
# Rob Speer (original code)
# URL: <http://nltk.sourceforge.net>
# For license information, ... | ronaldahmed/robot-navigation | neural-navigation-with-lstm/MARCO/nltk/featurestructure.py | Python | mit | 59,199 | [
"VisIt"
] | 6ecf13d6d1143b167a115c06005eedc31a8c9e07d103c516c2b16bd4867eb1a1 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Universal feed parser
Handles RSS 0.9x, RSS 1.0, RSS 2.0, CDF, Atom 0.3, and Atom 1.0 feeds
Visit http://feedparser.org/ for the latest version
Visit http://feedparser.org/docs/ for the latest documentation
Required: Python 2.1 or later
Recommended: Python 2.3 or lat... | henkelis/sonospy | web2py/gluon/contrib/feedparser.py | Python | gpl-3.0 | 130,078 | [
"NetCDF",
"VisIt"
] | 63cdae158db64f12a384fb778a653be09b66313c7f7e264a51c2cb3643a58517 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
from task import Task
from bay import Bay
from aggregator import Aggregator
import random
import checker
class _Parameter(object):
"""
parameter class to hold all vessel related parameters
"""
@checker.func_arg_check
def __init__(self, **kwargs):
... | CHEN-JIANGHANG/qcspgen | qcspgen/vessel.py | Python | mit | 12,070 | [
"Gaussian"
] | e2a5050ed4cfb5126e202ee11f32918a7935258291e4873c406b5a7ed778d77f |
#!/usr/bin/env python
#
# Copyright 2008,2009,2011,2012 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3, or (at ... | levelrf/level_basestation | gr-uhd/apps/uhd_siggen_base.py | Python | gpl-3.0 | 16,768 | [
"Gaussian"
] | ddae95d0de4ca0b18388b6e64bd23dd359a2d7a246de240070925239d18aa637 |
#!/usr/bin/env python
# pmx Copyright Notice
# ============================
#
# The pmx source code is copyrighted, but you can freely use and
# copy it as long as you don't change or remove any of the copyright
# notices.
#
# ----------------------------------------------------------------------
# pmx is Copyright (C... | dseeliger/pmx | scripts/analyze_dhdl.py | Python | lgpl-3.0 | 35,612 | [
"Gaussian",
"Gromacs"
] | d4891017187f7cf039d684d7cd561e88aa6a1369e3988d77ecbf8da1b8981a5b |
#===============================================================================
# LICENSE XOT-Framework - CC BY-NC-ND
#===============================================================================
# This work is licenced under the Creative Commons
# Attribution-Non-Commercial-No Derivative Works 3.0 Unported Li... | SMALLplayer/smallplayer-image-creator | storage/.xbmc/addons/net.rieter.xot.smallplayer/resources/libs/channelgui.py | Python | gpl-2.0 | 28,737 | [
"VisIt"
] | 0d3ae81b92afb7bf9e321aa93de46f66600ed4c489cafd86f3a2f97d1f0bd54c |
import pandas as pd
import numpy as np
from functools import partial
from ..api import expected
from ..lib.io import read_expected_from_file
import click
from .util import validate_csv
from . import cli
@cli.command()
@click.argument(
"expected_path",
metavar="EXPECTED_PATH",
type=str,
callback=parti... | open2c/cooltools | cooltools/cli/logbin_expected.py | Python | mit | 5,729 | [
"Gaussian"
] | 4bcb009e19c3b2f3b02dc1b9c93bf195d8bc3e0f47b80908d2118baf7a06a4a2 |
"""Xcoin Alert
Usage:
"""
import requests
import json
import time
from datetime import datetime
import logging
from pyfetion import PyFetion
#pyfection settings
username =
password =
#google settings
client_id =
client_secret =
#set alert price with xx$
btcLowPrice = 500 #$
btcHighPrice = 600
ltcLowPrice = 12
l... | arowser/xcoinalert | xcoinAlert.py | Python | gpl-3.0 | 6,706 | [
"VisIt"
] | dfe3e7f002a386debfaccc30e7320589f0adeca43048e8838b28a65864416f5c |
"""
Acceptance tests for Studio related to the container page.
The container page is used both for displaying units, and
for displaying containers within units.
"""
from nose.plugins.attrib import attr
from unittest import skip
from ...fixtures.course import XBlockFixtureDesc
from ...pages.studio.component_editor impo... | adoosii/edx-platform | common/test/acceptance/tests/studio/test_studio_container.py | Python | agpl-3.0 | 53,213 | [
"VisIt"
] | bc2d02a6af77bb44bf2b5bdedd649a9eea9913c1ec01d6f3b6aacfe62c733580 |
#! /usr/bin/python
import math
import os
def write_udi_clim(path,files):
for city in files:
if (city.rfind("epw")+3 == len(city)):
f = open(path+"/"+city, "r")
data = f.readlines()
f.close()
counter = 0
for line in data:
... | wolfris/radivity | radivity/scripts/py_modules/epw2udi_mod.py | Python | gpl-2.0 | 1,116 | [
"EPW"
] | 853cfed3a4d610f7558ef32e6e6f878ec92a2737e71c8fe0ff34913dd27e3460 |
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under t... | eonpatapon/rally | tests/hacking/checks.py | Python | apache-2.0 | 19,447 | [
"VisIt"
] | 254923481bc82736348470a9aa612a371b9da3cc46e85b665fe4895703731aa0 |
# Orca
#
# Copyright (C) 2015 Igalia, S.L.
#
# Author: Joanmarie Diggs <jdiggs@igalia.com>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at yo... | GNOME/orca | src/orca/scripts/apps/evolution/speech_generator.py | Python | lgpl-2.1 | 5,271 | [
"ORCA"
] | 598322eee598d0e48a27c8d1fe89c2da106a1f552dc7ba3a49249c4c169757a3 |
"""
Testing for the forest module (sklearn.ensemble.forest).
"""
# Authors: Gilles Louppe,
# Brian Holt,
# Andreas Mueller,
# Arnaud Joly
# License: BSD 3 clause
import pickle
import math
from collections import defaultdict
import itertools
from itertools import combinations
from itertools ... | huzq/scikit-learn | sklearn/ensemble/tests/test_forest.py | Python | bsd-3-clause | 57,368 | [
"Brian"
] | 9d9fc6ee08b75309ff329579b34277b9aa2f3f0483e70684a9449a0e66ba882c |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | matthiasdiener/spack | var/spack/repos/builtin/packages/dealii/package.py | Python | lgpl-2.1 | 17,742 | [
"NetCDF"
] | 672cf7a3b7691aed4ebe1c20d1fb194eb1c6144dd786b8dfbffe08d6ccd8a4c9 |
# Copyright 2015 by Raytheon BBN Technologies Corp. All Rights Reserved.
import ast
import meta
import numpy as np
from pyqgl2.ast_util import NodeError, expr2ast
from pyqgl2.importer import NameSpaces
from pyqgl2.importer import collapse_name
from pyqgl2.lang import QGL2
from pyqgl2.quickcopy import quickcopy
from ... | BBN-Q/pyqgl2 | src/python/pyqgl2/inline.py | Python | apache-2.0 | 78,934 | [
"VisIt"
] | e02471f50861085898a5f9c9b050b473b453ae93474f1f4f863c4d1fdd89348d |
#!/usr/bin/env python
import argparse
from Bio import AlignIO
#Convert a fasta file (aligned hopefully!) to phylip format.
# Uses BioPython to do everything.
#
# Matt Gitzendanner
# University of Florida
#
# fasta_to_phy.py -i file.fa -o file.phy
#
parser = argparse.ArgumentParser()
parser.add_argument("-i", help="i... | Cactusolo/ToolBox | fasta_to_phy.py | Python | mit | 689 | [
"Biopython"
] | 486ff4c276d13a6adc169ba26fe7d34f04572031e32cbb09334c070b2114cf58 |
#!/usr/local/bin/python
import time, sys, os
import numpy as np
np.errstate(invalid='ignore')
from prospect.models import model_setup
from prospect.io import write_results
from prospect.io import read_results as pr
from prospect import fitting
from prospect.likelihood import lnlike_spec, lnlike_phot, write_log, chi_s... | jrleja/bsfh | scripts/prospector_restart.py | Python | mit | 7,080 | [
"Gaussian"
] | 8a997a22b60fbee184ef48a2032fe1ecaa3f9c6dc3d85fe99b8b09e00034b424 |
# (c) 2015, Brian Coca <bcoca@ansible.com>
# (c) 2012-17 Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
DOCUMENTATION = """
name: url
author: Brian Coca (@bcoca)
version... | privateip/ansible | lib/ansible/plugins/lookup/url.py | Python | gpl-3.0 | 7,798 | [
"Brian"
] | 54b47be4d367adf48d68761ffd9ce9365b5e5ee6ebf2d828f57edddeb40e2f8d |
"""
awot.io.read_uwka_lidar
=======================
Scripts for reading NetCDF data files from the
Wyoming Cloud Lidar, part of the University of Wyoming
King Air Research Aircraft facility.
http://flights.uwyo.edu/wcl/
"""
# Load the needed packages
from __future__ import print_function
from netCDF4 import Dataset,... | adlyons/AWOT | awot/io/read_uwka_lidar.py | Python | gpl-2.0 | 5,496 | [
"NetCDF"
] | 7e1f37ef0c6bc0118354509f57ef332f17bc9cb7c1418e0be02488ea55073b1f |
####################################################################################################
#
# Musica - A Music Theory Package for Python
# Copyright (C) 2017 Fabrice Salvaire
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as pub... | FabriceSalvaire/Musica | Musica/Midi/GeneralMidiSoundSet.py | Python | gpl-3.0 | 8,478 | [
"CRYSTAL"
] | ad017bc78a2b9de29687695f0c2c0a95f46ad0d3b0a7cfc9e8b2d1814a337253 |
#!/usr/bin/env python3
"""
1.1-blast-V.py
This script looks for raw NGS data files in the current folder and parses them
into manageable chunks for searching with BLAST on the cluster. Each raw
read that meets the length restrictions is assigned a unique 8 digit
serial number and submitted to the cl... | scharch/zap | annotate/1.1-blast_V.py | Python | gpl-3.0 | 13,889 | [
"BLAST"
] | 94cefed5c3fdc423e6331ea0bf47eb9a39ef46dadb9b96fc05b7ed9ad6b82a6f |
import os
import wx
import sys
import time
import __future__
from Bio.Blast import NCBIWWW
from Bio.Blast import NCBIXML
from Bio.Blast.Applications import *
from Bio import SeqIO
from xlrd import open_workbook
from xlwt import Workbook
from threading import Thread
#GENe RNA Cataloger
#Nathan Owen, ncowe... | newOnahtaN/Genie-GENe-Cataloger | GENe_Windows/GENe.py | Python | mit | 20,146 | [
"BLAST"
] | e35756de252d3acaa083f064fa4a2390ab36e29f250085874dc78458d4f249dc |
import numpy as np
from mayavi import mlab
from tvtk.api import tvtk
def mesh_as_vtk_actor(verts, tris, compute_normals=True, return_polydata=True, scalars=None):
pd = tvtk.PolyData(points=verts, polys=tris)
if scalars is not None:
pd.point_data.scalars = scalars
if compute_normals:
normal... | tneumann/cmm | cmmlib/vis/mesh.py | Python | gpl-2.0 | 2,747 | [
"Mayavi"
] | 5ed75f629b6c8e9b44a1dadcdd923448cf313fc085c02bf75dda9d345a1de495 |
#
# Copyright 2013 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | YuepengGuo/zipline | tests/test_perf_tracking.py | Python | apache-2.0 | 79,366 | [
"COLUMBUS"
] | e09c2d03c60cbae37e76282688f8a6f1db6a6e36e0064285eb6c467afbf412fd |
"""
Gaussian Mixture Models.
This implementation corresponds to frequentist (non-Bayesian) formulation
of Gaussian Mixture Models.
"""
# Author: Ron Weiss <ronweiss@gmail.com>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Bertrand Thirion <bertrand.thirion@inria.fr>
# Important note for the deprec... | asnorkin/sentiment_analysis | site/lib/python2.7/site-packages/sklearn/mixture/gmm.py | Python | mit | 32,284 | [
"Gaussian"
] | 4a2838d9ed61a4126924c64a55fd00090be9be468cc1b8e47bf1d6d8072340e9 |
from Firefly import logging
from Firefly.const import DEVICE_TYPE_WATER_SENSOR, SENSOR_DRY, SENSOR_WET, WATER
from Firefly.helpers.device import *
from Firefly.helpers.device.device import Device
from Firefly.helpers.metadata.metadata import action_text, action_water_dry
ALARM = 'alarm'
COMMANDS = []
REQUESTS = [AL... | Firefly-Automation/Firefly | Firefly/helpers/device_types/water_sensor.py | Python | apache-2.0 | 2,538 | [
"Firefly"
] | fbf40137fd94e1a1e348cdaa2afe9f3d62d82f977d73b3138ec78a3d5850880b |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Ftk(CMakePackage):
"""FTK is a library that simplifies, scales, and delivers feature
t... | LLNL/spack | var/spack/repos/builtin/packages/ftk/package.py | Python | lgpl-2.1 | 2,208 | [
"NetCDF",
"VTK"
] | a2368bcc995f7d90286689384b3b20032ebb57b838b91702c3ed05a6ede9a3d7 |
# This file is part of the pyMOR project (http://www.pymor.org).
# Copyright Holders: Rene Milk, Stephan Rave, Felix Schindler
# License: BSD 2-Clause License (http://opensource.org/licenses/BSD-2-Clause)
from __future__ import absolute_import, division, print_function
try:
from pyvtk import (VtkData, Unstructure... | michaellaier/pymor | src/pymor/tools/vtkio.py | Python | bsd-2-clause | 3,797 | [
"VTK"
] | 6f2afe88ddb820109a12a464e4243d5511887cc2847bbc663c3b2cf6618ca9d3 |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | h2oai/sparkling-water | py/tests/unit/with_runtime_sparkling/test_glm.py | Python | apache-2.0 | 10,121 | [
"Gaussian"
] | 890d45241602dfcefd71d55b25ad42b8b2309f8f82d98df048f2b0f47b6c927a |
# encoding: UTF-8
#
# Copyright 2012-2013 Alejandro Autalán
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License version 3, as published
# by the Free Software Foundation.
#
# This program is distributed in the hope that it will be useful, but
#... | ArcherSys/ArcherSys | Lib/site-packages/pygubudesigner/properties.py | Python | mit | 26,535 | [
"FLEUR"
] | a36900b983399e4bd2b135a65805f6f99da7ee8106c824772621258c87b7b1e3 |
import numpy as np
from gpaw.utilities import erf
from gpaw.gaunt import gaunt as G_LLL
from gpaw.spherical_harmonics import Y, nablarlYL as nablaY #XXX use gpaw.sphere.rsh
from gpaw.sphere.rsh import intYY, intYY_ex, intYY_ey, intYY_ez
def bilinear_concentric_potential(r_g, dr_g, f_g, ft_g, l1, l2, alpha, rfilt=Non... | robwarm/gpaw-symm | gpaw/sphere/bilinear.py | Python | gpl-3.0 | 5,937 | [
"GPAW"
] | 74c763900984dbea71cff668bef8b986b8a2eace3da30f64bef007f63f83614a |
# Copyright 2008 Brian Boyer, Ryan Mark, Angela Nitzke, Joshua Pollock,
# Stuart Tiffen, Kayla Webley and the Medill School of Journalism, Northwestern
# University.
#
# This file is part of Crunchberry Pie.
#
# Crunchberry Pie is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gene... | brianboyer/newsmixer | pie/quips/models.py | Python | gpl-3.0 | 2,197 | [
"Brian"
] | 049818e044d23461c64767f7eabd3d75b55b00a37a5ddd554e6dd5c3651fa519 |
import sys
PY3 = (sys.version_info[0] >= 3)
if PY3:
string_types = str,
else:
string_types = basestring,
try:
any = any
except NameError:
def any(iterable):
for element in iterable:
if element:
return True
return False
from pybindgen.typehandlers.codesink... | gjcarneiro/pybindgen | pybindgen/utils.py | Python | lgpl-2.1 | 8,780 | [
"VisIt"
] | 6139dfa5511d22ba399b45bcf0239e866dbe192e57b1e6d87626a31b09751fc6 |
from __future__ import division, absolute_import, print_function
import warnings
import sys
import collections
import operator
import numpy as np
import numpy.core.numeric as _nx
from numpy.core import linspace, atleast_1d, atleast_2d
from numpy.core.numeric import (
ones, zeros, arange, concatenate, array, asarr... | chiffa/numpy | numpy/lib/function_base.py | Python | bsd-3-clause | 148,193 | [
"Gaussian"
] | af91b08875f10b5dd352abab8c202f297ae6cfa45d9e5afb50b823451988afdb |
# ******************************************************************************
# pysimm.forcefield package
# ******************************************************************************
#
# ******************************************************************************
# License
# ***********************************... | polysimtools/pysimm | pysimm/forcefield/__init__.py | Python | mit | 1,714 | [
"CHARMM"
] | 192ccefaaffe2473e14d78075f9a9a73e16b19e17f076e4e9db20acbcbe77d15 |
""" ResourceManagementClient
Client to interact with the ResourceManagementDB.
"""
__RCSID__ = '$Id$'
from DIRAC.Core.Base.Client import Client
def uppercase_first_letter(key):
""" a method that makes the first letter uppercase only (and leaves the remaining letters unaffected)
"""
return key[0].upper() +... | andresailer/DIRAC | ResourceStatusSystem/Client/ResourceManagementClient.py | Python | gpl-3.0 | 25,387 | [
"DIRAC"
] | a5cd3ad030d26a77f1c152d5d63a7a7f67599249eae911149f927265f85d0cd5 |
import json
from collections import defaultdict
from django.core.serializers.json import DjangoJSONEncoder
from django.conf import settings
from django.db import connection
from django.http import HttpResponse, JsonResponse
from django.utils import timezone
from django.shortcuts import get_object_or_404
from rest_fr... | catsop/CATMAID | django/applications/catmaid/control/node.py | Python | gpl-3.0 | 32,041 | [
"NEURON"
] | c3f2309ccbfeece7387901144c5544ea0c41de0abae787f856302e82ad5e13fd |
#!/usr/bin/env python
#
# rePear, the iPod database management tool
# Copyright (C) 2006-2008 Martin J. Fiedler <martin.fiedler@gmx.net>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either ... | worstje/repear | repear.py | Python | gpl-2.0 | 71,425 | [
"VisIt"
] | 33d289be2514085ed995d631b4f9b11dfda2c5bd90042ead5488c1010c0327b2 |
#!/usr/bin/python
# This file generated by a program. do not edit.
import pycopia.XML.POM
attribDirection_50741361576644121884686865416273322500 = pycopia.XML.POM.XMLAttribute(u'direction', pycopia.XML.POM.Enumeration((u'ltr', u'rtl', u'inherit')), 12, None)
attribOnend_2245217001552764273737467841846343401 = pyc... | kdart/pycopia | XML/pycopia/dtds/svg11_flat_20030114.py | Python | apache-2.0 | 592,173 | [
"Gaussian"
] | 5e5f7d8a1f9afe307ecd289f95791f579f799b5d458d4acca1b88152e2e4cd55 |
import numpy as np
class NeuralNet():
def __init__(self, num_nodes, weights_=[], classification=True, auto_encoder=False, penalty=0., learn_rate=0.01):
self.num_nodes = num_nodes
self.weights_ = weights_
self.is_fit = False
self.classification = classification
self.aut... | garnachod/SimpleDoc2Vec | NNet.py | Python | gpl-2.0 | 16,201 | [
"NEURON"
] | 70cc31ae6dea133e45a49bb35c47c0447669cac8641f3d55055c628a6bea9a8f |
import json
import math
import operator
import requests
from collections import OrderedDict
from django.conf import settings
from .utils import get_ratio, get_division, SUMMARY_LEVEL_DICT
class ApiClient(object):
def __init__(self, base_url):
self.base_url = base_url
def _get(self, path, params=None... | sseguku/simplecensusug | censusreporter/apps/census/profile.py | Python | mit | 47,058 | [
"MOE"
] | 96a594db1fea6c359aa2e28f4e04a56179cd70a9e035ccd799399de6b1738766 |
# -*- coding: utf-8 -*-
"""The Google Chrome history event formatters."""
from plaso.formatters import interface
from plaso.formatters import manager
class ChromeFileDownloadFormatter(interface.ConditionalEventFormatter):
"""Formatter for a Chrome file download event."""
DATA_TYPE = u'chrome:history:file_downlo... | ostree/plaso | plaso/formatters/chrome.py | Python | apache-2.0 | 1,270 | [
"VisIt"
] | a4a4663881d62c956d77c70476dcb389c6c604c8337275acc403fe2b103c9d8c |
from __future__ import absolute_import
from __future__ import print_function
from .base import NodeVisitor
from .. import nodes
from ..utils import stringutil
#==============================================================================#
class CSSFormatterVisitor(NodeVisitor):
def __init__(self, stream):
... | colossalbit/cssypy | cssypy/visitors/formatters.py | Python | bsd-3-clause | 9,096 | [
"VisIt"
] | bae44a0265b98cae3f0774da5113e752e6e200a2b10267a6300e13652a0e90fc |
#!/usr/bin/python
#
# Copyright (c) 2015 Galina Shubina
#
# This program computes optimal circular section out of Legos given diameter.
#
# Diameter is given in special units, such that the smallest standard lego
# unit ("a pip") is 5 long and 2 high. Please note that this is a fitting
# a "standing circle" rather than... | galinash/legoland | compute_optimal_circle.py | Python | gpl-2.0 | 12,561 | [
"TINKER"
] | a2ec91474f6beeacccc1638d05572d5ff510c0776a97b0c0d5368302c0804d1f |
#!/usr/bin/env python
"""
renumber the integers at the beginning of ever line in the file
to make sure these numbers are contiguous.
The file is read from sys.stdin.
This program does not parse an entire LAMMPS data file.
The text from the "Atoms" section
(or "Bonds", or "Angles", or "Dihedrals", or... | SGenheden/lammps | tools/moltemplate/src/renumber_DATA_first_column.py | Python | gpl-2.0 | 1,944 | [
"LAMMPS"
] | b52509c32bb58b5cc52ad2e659d44f7235c5d58077817c38a178742d164623a1 |
# Version: 0.18
"""The Versioneer - like a rocketeer, but for versions.
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/warner/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, 3.5, 3.6, and pypy
* [![Latest Version]
(... | alisaifee/flask-limiter | versioneer.py | Python | mit | 68,751 | [
"Brian"
] | 28f9a8d19852bedd73a7f4863a3c9aa9d25bc8032ea09244200c209779cb00ad |
"""
@name: Modules/House/Entertainment/entertainment.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2013-2020 by D. Brian Kimmel
@license: MIT License
@note: Created on Jun 3, 2013
@summary: Entertainment component access module.
Start up entertainment systems.
Listen... | DBrianKimmel/PyHouse | Project/src/Modules/House/Entertainment/entertainment.py | Python | mit | 9,498 | [
"Brian"
] | a3bf108d61e5be785a4e95906847a7a319d2eaf26b86ba53bdc97dd72ab61b0a |
"""
Demodulation of a signal means convolving it with a sine and cosine at
the 'carrier frequency'. The two resulting signals are usually low-pass
filtered and called 'quadrature I' and 'quadrature Q'. Based on this
simple idea, the IQ module of pyrpl can implement several
functionalities, depending on the particular s... | lneuhaus/pyrpl | pyrpl/hardware_modules/iq.py | Python | gpl-3.0 | 24,910 | [
"exciting"
] | fe8d334e4ad027a97164f59d3f4c2d84b00b4cae3dc0fcc51d7f5e30b2d33abb |
#!/usr/bin/env python
import os
import sys
from setuptools import setup, find_packages
PY2 = False
if sys.version_info < (3, 0):
PY2 = True
if sys.version_info < (2, 7, 7):
imajor, minor1, minor2 = sys.version_info[:3]
# makes sure we don't get the following bug:
# Issue #19099: The struct module now... | saullocastro/pyNastran | setup.py | Python | lgpl-3.0 | 7,020 | [
"VTK"
] | 152c7a63f3d8655b81a41ede9b4af1a75de0f30950b2f3536c6b30281f395af1 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/pbc/tddft/__init__.py | Python | apache-2.0 | 746 | [
"PySCF"
] | 0dccb64838fee2decbe77bda6a1ebe8452f0ef9cb8f393deffa7eda1ab9604db |
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