text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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"""Installation script."""
#------------------------------------------------------------------------------
# Imports
#------------------------------------------------------------------------------
import os
import os.path as op
import re
import numpy
import sys
import platform
try:
from setuptools import setup
... | benvermaercke/klustakwik2 | setup.py | Python | bsd-3-clause | 3,480 | [
"Brian"
] | d8f6bca4865896f6d946a854ecfe4e370b045ab2bece37bdc9453ee01d3f02b3 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkTreeMapLayout(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.... | nagyistoce/devide | modules/vtk_basic/vtkTreeMapLayout.py | Python | bsd-3-clause | 479 | [
"VTK"
] | 481fadb2626ea58635df9134c3e2f2e6e48a966fd30a60407feb06366188a13b |
# -*- coding: UTF-8 -*-
import datetime
import os
import os.path
import subprocess
from collections import defaultdict
from django.conf import settings as dsettings
from django.core import exceptions
from django.core.cache import cache
from django.db import connection
from django.db import models
from django.db import... | yakky/conference | conference/models.py | Python | bsd-2-clause | 46,395 | [
"ESPResSo"
] | 34593daf6bfedd64deb315b3807bf450fa70fda044d783bb989fac10d71c409e |
#!/usr/bin/env pythonw
#!/usr/bin/env ffmpeg
#################################
# NPR Leveler
# NPR Labs, Copyright 2015
# Provides a platform-agnostic user interface for analyzing and
# adjusting audio files to enforce compliance with EBU Loudness
# standards.
#
# This version is for DEBUGGING PURPOSE... | goldfarb/LVLR | LVLR.py | Python | gpl-2.0 | 75,067 | [
"VisIt"
] | 15750b92071731a4849215b31ef9a22ffe96b3b9623f44a4ca435d739cbc64de |
import logging
import os
from galaxy.util import listify
from galaxy.web.form_builder import SelectField
from tool_shed.util import hg_util
from tool_shed.util import metadata_util
from tool_shed.util import shed_util_common as suc
log = logging.getLogger( __name__ )
def build_approved_select_field( trans, name, se... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/tool_shed/grids/util.py | Python | gpl-3.0 | 15,264 | [
"Galaxy"
] | 86c9dd7fd8a7c1877053ed8a161aad453b7af06f885359586a9ce98ed53aa5b0 |
""" Principal Component Analysis
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Mathieu Blondel <mathieu@mblondel.org>
# License: BSD Style.
import numpy as np
from scipy import linalg
from math import log
from ..base import BaseEstimator,... | florian-f/sklearn | sklearn/decomposition/pca.py | Python | bsd-3-clause | 18,072 | [
"Gaussian"
] | 778aac2d3ee443a1f2af167f0850f8577f5f1852a053f011608137b0f6c75701 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/r-biocgenerics/package.py | Python | lgpl-2.1 | 1,833 | [
"Bioconductor"
] | 8f42e9b374d589cc255a4ec541fe84b2395df83260de67d4d15247ccdb5d59b0 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | mfherbst/spack | var/spack/repos/builtin/packages/r-dirichletmultinomial/package.py | Python | lgpl-2.1 | 2,008 | [
"Bioconductor"
] | 4fb062bb8a9464c844020e3c571b4c07744bcbe6ac9a14e8b50c11519d2c4171 |
'''bwaAlign.py
Usage:
bwaAlign.py <prefix> <indir> <index> <threads> <outbam> <modules>
[--unpaired] [--namesort] [--samplename=<sn>] [--libraryid=<li>]
[--readgroup=<rg>] [--platform=<pl>] [--trim=<tm>]
Options:
--unpaired Input reads are unpaired.
--namesort ... | adam-rabinowitz/ngs_python | scripts/Fastq/bwaAlign.py | Python | gpl-2.0 | 5,903 | [
"BWA"
] | 18e78cec7fec4083b9f686efffa652be836d1c103705c2e9238c99baac862be2 |
# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2013-2017 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the Licen... | gem/oq-hazardlib | openquake/hazardlib/geo/surface/multi.py | Python | agpl-3.0 | 25,335 | [
"Brian"
] | afc4856d69e444adb606eccc252fd67dbb0afbfcbbb6b04cb3be3ee2246a124a |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | andysim/psi4 | psi4/driver/p4util/inpsight.py | Python | gpl-2.0 | 23,238 | [
"Jmol",
"Psi4"
] | 3375b832685e63421091e5997d1a1efefc766bb30cfb585f553b159e30b9823c |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements a FloatWithUnit, which is a subclass of float. It
also defines supported units for some commonly used units for energy, length,
temperature, time and charge. FloatWithUnit also suppor... | fraricci/pymatgen | pymatgen/core/units.py | Python | mit | 27,807 | [
"pymatgen"
] | 8ebf4e2af22e965c70a3c888332e6dce192b46d8e1a502e169ddd1b3fda5d7bf |
"""
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | mattgiguere/scikit-learn | sklearn/tree/tree.py | Python | bsd-3-clause | 33,984 | [
"Brian"
] | 759a2cadfb06f45444317bc5dda69e7d3875cb6a3d8cfdadffd7e0609a1106a7 |
# (c) Crown Owned Copyright, 2016. Dstl.
import os
import unittest
from splinter import Browser
class TestLoginPage (unittest.TestCase):
def setUp(self):
self.browser = Browser('phantomjs')
def test_login_page_appears(self):
# This needs to come from an environment variable at some point
... | dstl/lighthouse | acceptancetests/tests/acc_test_login_page.py | Python | mit | 758 | [
"VisIt"
] | 2c4bb4793649a0de67b9504a4792757417c1b99d883ac8ef8ec693bdfcce24da |
import MDAnalysis as mda
import numpy as np
from numpy.testing import (assert_equal, assert_array_equal, assert_raises)
from unittest import TestCase
from MDAnalysis.lib.mdamath import triclinic_vectors
from MDAnalysisTests.datafiles import (DMS)
from MDAnalysisTests.coordinates.base import BaseTimestepTest
class T... | alejob/mdanalysis | testsuite/MDAnalysisTests/coordinates/test_dms.py | Python | gpl-2.0 | 2,807 | [
"MDAnalysis",
"VMD"
] | 427b708cf606917de18d0396ca6f93e28766c2c05a50a919968a4f43feadfc54 |
"""
Calculates a crystal diffraction.
Except for energy all units are in SI. Energy is in eV.
"""
from math import isnan
from numpy import pi
import scipy.constants.codata
from crystalpy.diffraction.GeometryType import BraggDiffraction, BraggTransmission, LaueDiffraction, LaueTransmission
from crystalpy.diffraction.... | edocappelli/crystalpy | crystalpy/diffraction/Diffraction.py | Python | mit | 21,304 | [
"CRYSTAL"
] | 6ec766ce2969b0d2e15f3c3c1ed865a7efa77901b2f5006f058174dcff4ca9b1 |
from numpy import *
from pylab import *
from PyOFTK.utilities import *
import PyOFTK
T = 16.0
nt = pow(2,10)
dt = T/nt
z = 20.0
nz = 1000
nplot = 2
n1 = round(nz/nplot)
nz = n1*nplot
dz = z/nz
t = linspace(-T/2.0, T/2.0, nt)
s = 0.01
zv = (z/nplot)*(0:nplot);
u = zeros(length(t),length(zv))
u_ini_y =... | mlaprise/PyOFTK | PyOFTK/examples/agrawal_fig4_16.py | Python | gpl-2.0 | 740 | [
"Gaussian"
] | f6638dca349e7ef1bc840f4bca049bfd3091cdd920a7688fba4f1b054febcf3c |
# Copyright 2014 The Oppia Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... | AllanYangZhou/oppia | core/domain/email_manager_test.py | Python | apache-2.0 | 78,772 | [
"VisIt"
] | 1cb5abb2d9f1e92b80789107620f9e689d3bc5cceea32422d8557d64218cb466 |
../../../../../../../share/pyshared/orca/scripts/apps/soffice/script.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/soffice/script.py | Python | gpl-3.0 | 71 | [
"ORCA"
] | caacad5509385abe49a8df7c9a2258f8d71b18dd7997da20c98433e6e440a8be |
# -*- coding: utf-8 -*-
#
# Copyright (C) Pootle contributors.
#
# This file is a part of the Pootle project. It is distributed under the GPL3
# or later license. See the LICENSE file for a copy of the license and the
# AUTHORS file for copyright and authorship information.
from translate.lang import data as langdata
... | pavels/pootle | pootle/i18n/gettext.py | Python | gpl-3.0 | 2,683 | [
"ADF"
] | 14a5117eac185854ad235d4bf8cbd4fab22d51a98b110fd19c3fb4f4337254e8 |
#!/usr/bin/env python
##
## @file readSBML.py
## @brief Similar to validateSBML, but without the validation
## @author Sarah Keating
## @author Ben Bornstein
##
##
## This file is part of libSBML. Please visit http://sbml.org for more
## information about SBML, and the latest version of libSBML.
##
import ... | dilawar/moose-full | dependencies/libsbml-5.9.0/examples/python/readSBML.py | Python | gpl-2.0 | 992 | [
"VisIt"
] | 0134d467e20da59b3a3cfdb0d260dd92ea0de7ba8381156f39768e760cd41a4f |
# -*- coding: utf-8 -*-
# @Author: YangZhou
# @Date: 2017-06-12 22:01:42
# @Last Modified by: YangZhou
# @Last Modified time: 2017-06-19 13:16:20
from aces.materials import Material
from .atomic import get_unique_atoms, swap, wrap
from ase import Atoms, Atom
from math import pi, sqrt
from ase.dft.kpoints import ibz... | vanceeasleaf/aces | aces/materials/graphene.py | Python | gpl-2.0 | 2,739 | [
"ASE"
] | 459f72ee64072071153b08c78fe63d6de840ee4024f9b40ba1eadbb01bf1bd56 |
#! PYTHONEXE
import sys
sys.path = ["REPLACEPATH"]+sys.path
import numpy as nm
import clik
import clik.hpy as hpy
def main(argv):
if len(sys.argv)!=2:
print "usage : %s lkl_file"
sys.exit(1)
if clik.try_lensing(argv[1]):
main_lensing(argv)
return
main_CMB(argv)
def main_CMB(argv):
clikl = cl... | ClaudioNahmad/Servicio-Social | Parametros/CosmoMC/prerrequisitos/plc-2.0/src/python/tools/clik_print.py | Python | gpl-3.0 | 3,666 | [
"Gaussian"
] | 443cc35041a5c9e3a69a5182196d5d9b1c9de44fb9867f7f0eb91e616d944386 |
#!/usr/local/bin/python
# generates data drawn from a gaussian distribution
# useful for testing a variety of processes
"""
Copyright (c) 2013 Josh Attenberg
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the... | jattenberg/datascience-utilities | datascience_utilities/normal.py | Python | mit | 3,590 | [
"Gaussian"
] | d853add6b07ce9b9f1ae79d36e3af32c21b7276b259a9635a7e2433fd5038ada |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | SKIRT/PTS | do/modeling/cache_images.py | Python | agpl-3.0 | 7,505 | [
"Galaxy"
] | 6638199c9e552eaff675d0ecc5679145b4759cedbd75866c310af836e16bf595 |
"""
DIRAC.StorageManagementSystem.DB package
"""
| DIRACGrid/DIRAC | src/DIRAC/StorageManagementSystem/DB/__init__.py | Python | gpl-3.0 | 52 | [
"DIRAC"
] | 2ab42f18965d3b8da596fe20968c1e24d318db33bc88bc2469a6657c3fd6b03f |
aa_dict = {
'A' : 'ala',
'C' : 'cys',
'D' : 'asp',
'E' : 'glu',
'F' : 'phe',
'G' : 'gly',
'H' : 'his',
'I' : 'ile',
'K' : 'lys',
'L' : 'leu',
'M' : 'met',
'N' : 'asn',
'P' : 'pro',
'Q' : 'gln',
'R' : 'arg',
'S' : 'ser',
'T' : 'thr',
'V' : 'val',
'W' : 'trp',
... | gratefulfrog/lib | python/pymol/pymol_path/examples/cookbook/build_peptide.py | Python | gpl-2.0 | 805 | [
"PyMOL"
] | f1d1bf33be2dcc85e246f101f26e486e95484684c473a81aaa8529e0690b6eaf |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.vaibhav.brocadeswitches/setup.py | Python | gpl-2.0 | 3,280 | [
"VisIt"
] | 8e1c60118e5e05272bf3f7c8ba32775e7f32877806e16e6d1fb7e57488cd1b8e |
import warnings
from numpy import *
import scipy
from scipy.linalg import eig as geneig
from scipy.signal import lfilter
from scipy.stats import norm as gaussian
import time
def fit_ellipse(xy):
'''fit an ellipse to the points.
INPUT:
xy -- N x 2 -- points in 2D
OUTPUT:
A,B,C,D,E,F -- real numbe... | MMaus/mutils | fmalibs/util.py | Python | gpl-2.0 | 47,363 | [
"Gaussian"
] | 6848a8f306f415e4f1bfc59732aa8aa557302c76846e7853e779630311800e8e |
import numpy as np
import math
import sys
sys.path.insert(0,'../..')
import os
import classifier_eval_simplified
from sklearn import tree
from sklearn.ensemble import AdaBoostClassifier
from sklearn.svm import SVC
for dim in range(2,11):
comp_file_list=[]
######################################################... | weissercn/MLTools | Dalitz_simplified/evaluation_of_optimised_classifiers/svm_sin/svm_Sin_evaluation_of_optimised_classifiers.py | Python | mit | 1,573 | [
"Gaussian"
] | b0abc13f33d5383f52824bdb142932e2ff31a1522654bfbe9ed3124bd12a315b |
"""
Implementation of Harwell-Boeing read/write.
At the moment not the full Harwell-Boeing format is supported. Supported
features are:
- assembled, non-symmetric, real matrices
- integer for pointer/indices
- exponential format for float values, and int format
"""
from __future__ import division, print_... | chaluemwut/fbserver | venv/lib/python2.7/site-packages/scipy/io/harwell_boeing/hb.py | Python | apache-2.0 | 18,471 | [
"exciting"
] | a33db21cc95180815b6efc39e42ea49f97989f9b08da5d6b9c396a29d408e54a |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements plotter for DOS and band structure.
"""
import copy
import itertools
import logging
import math
import warnings
from collections import Counter, OrderedDict
import matplotlib.lines a... | gmatteo/pymatgen | pymatgen/electronic_structure/plotter.py | Python | mit | 184,870 | [
"BoltzTrap",
"CRYSTAL",
"Gaussian",
"Mayavi",
"VASP",
"pymatgen"
] | 98f181ddd52566eea4a37199c0f26c47214385005eb4695c9ddd00f7a20863f6 |
"""Setup script for Bokeh."""
#-----------------------------------------------------------------------------
# Copyright (c) 2012 - 2014, Continuum Analytics, Inc. All rights reserved.
#
# Powered by the Bokeh Development Team.
#
# The full license is in the file LICENCE.txt, distributed with this software.
#---------... | daodaoliang/bokeh | setup.py | Python | bsd-3-clause | 19,751 | [
"GULP"
] | e8168e10f298ef9d87fb7e437f048c19432e6aa1d6f98aec95e221387fd27a4d |
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | manipopopo/tensorflow | tensorflow/contrib/autograph/pyct/static_analysis/reaching_definitions.py | Python | apache-2.0 | 9,891 | [
"VisIt"
] | d880660183da2f6e2aaecdbce0404c42a7de426a0bf5d73a859447e6a8477bf3 |
'''
SYNBIOCHEM-DB (c) University of Manchester 2015
SYNBIOCHEM-DB is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
import multiprocessing
import sys
from sbcdb import chebi_utils, chemical_utils, mnxref_utils, \
ncbi_taxo... | synbiochem/biochem4j | sbcdb/build.py | Python | mit | 1,832 | [
"VisIt"
] | cd714f5138b3e3e66b7c5f5b8c983d8cb4834849b5adc4d6c77af98fdbcc4745 |
import re
from corehq.apps.app_manager.const import USERCASE_TYPE
from corehq.apps.app_manager.exceptions import LocationXpathValidationError
from django.utils.translation import ugettext as _
def dot_interpolate(string, replacement):
"""
Replaces non-decimal dots in `string` with `replacement`
"""
pa... | puttarajubr/commcare-hq | corehq/apps/app_manager/xpath.py | Python | bsd-3-clause | 8,813 | [
"VisIt"
] | 2df7d914cf8094803ca0bf2378aed559c5e44b031cdec949940440c304b9c085 |
__doc__ = """
macromdelmin.py is a convenience script that wraps Schrodinger's macromodel bmin
executable.
For each structure in the input file, generate a MacroModel com file and run
the job.
Copyright Schrodinger, LLC. All rights reserved.
macromodelmin.py was written by Chris Higgs of Schrodinger, LLC.
and was a... | chemalot/chemalot | bin/macromodelmin.py | Python | apache-2.0 | 18,287 | [
"Amber",
"MacroModel"
] | 5a42941a3da42d9ada2c3c569045ac6b306a230e475cf19b9c2188a817c38dcb |
# -*- coding: utf-8 -*-
# Copyright (c) 2017, Frappe Technologies Pvt. Ltd. and Contributors
# See license.txt
from __future__ import unicode_literals
import frappe, erpnext
import unittest
from frappe.utils import nowdate
from erpnext.hr.doctype.employee_advance.employee_advance import make_bank_entry
from erpnext.hr... | saurabh6790/erpnext | erpnext/hr/doctype/employee_advance/test_employee_advance.py | Python | gpl-3.0 | 1,636 | [
"VisIt"
] | 7038b54fcb7cfa3c5b2966cf335c6d5070c39f076443b5301885940ac4b579d8 |
from pymatgen.optimization.neighbors import find_points_in_spheres # type: ignore
from pymatgen.core.lattice import Lattice
import numpy as np
from pymatgen.util.testing import PymatgenTest
class NeighborsTestCase(PymatgenTest):
def setUp(self):
self.lattice = Lattice.cubic(10.0)
self.cubic = se... | gVallverdu/pymatgen | pymatgen/optimization/tests/test_neighbors.py | Python | mit | 1,982 | [
"pymatgen"
] | d8081c3fcbde3d437014653479150f2162af55520ba04b5a739d294385e0f280 |
"""
The B{0install download} command-line interface.
"""
# Copyright (C) 2011, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import sys
from zeroinstall import _
from zeroinstall.cmd import UsageError, select
from zeroinstall.injector import model
from zeroinstall.support import tas... | dabrahams/0install | zeroinstall/cmd/download.py | Python | lgpl-2.1 | 1,377 | [
"VisIt"
] | b6211205a8b2c45b1dec693f5ff186970a7d8451cf9acfa4734d4813bee9a356 |
import unittest
import numpy as np
from pymatgen import Structure
from pymatgen.analysis.eos import EOS
from pymatgen.analysis.quasiharmonic import QuasiharmonicDebyeApprox
__author__ = 'Kiran Mathew'
class TestQuasiharmociDebyeApprox(unittest.TestCase):
def setUp(self):
struct = Structure.from_dict({
... | gVallverdu/pymatgen | pymatgen/analysis/tests/test_quasiharmonic_debye_approx.py | Python | mit | 5,782 | [
"pymatgen"
] | 6697bf7a636e5f6318cedbc7f670c8869150b17d532b3be36716bdc6bfc17595 |
# coding=utf-8
# Copyright 2016 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | aisk/grumpy | compiler/block.py | Python | apache-2.0 | 14,219 | [
"VisIt"
] | 3f723e2648d67784e7c6a4b47a398ad62506927afb07e9555185016452cc9111 |
"""
====================================================================
Linear and Quadratic Discriminant Analysis with confidence ellipsoid
====================================================================
Plot the confidence ellipsoids of each class and decision boundary
"""
print __doc__
from scipy import lina... | lucidfrontier45/scikit-learn | examples/plot_lda_qda.py | Python | bsd-3-clause | 4,757 | [
"Gaussian"
] | 5525f2245c284609fe5bca5707791ed836b58a9449a3ff12ec0b9c73cbf3fbb9 |
import numpy as np
import mdtraj as md
from unittest import skipIf
import logging
from mdtraj.testing import eq
from openmoltools import utils
from openmoltools import amber
import simtk.unit as u
from simtk.openmm import app
import simtk.openmm as mm
import simtk.openmm.openmm as mmmm
from distutils.spawn import find_... | Clyde-fare/openmoltools | openmoltools/tests/test_utils.py | Python | gpl-2.0 | 5,934 | [
"Amber",
"Gromacs",
"MDTraj",
"OpenMM",
"RDKit"
] | 42d839279c8947577091f761f0ebf7927bc820f26ef9b28f3682b2a6b62fc813 |
import argparse
import re
import requests
from constants import POST_URL_REGEX, SEARCHPAGES_REGEX, FIND_OLDER_REGEX, PAGENAV_CLASS, base_url
def collect_post_ids(session, data, username, searchurl, visited=[], godeeper=False, fetcholder=False):
"""Builds a list of a given user's posts.
Depending on the p... | nukeop/codexscripts | scripts/users.py | Python | gpl-3.0 | 4,261 | [
"VisIt"
] | ea66d55054e58a0a4ec0f3edc5018b10620c3e48a1748379c170b6c11c1e07f0 |
#!/usr/bin/env python
# -*- coding: utf-8
# Copyright (C) 2010 - 2012, A. Murat Eren
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free
# Software Foundation; either version 2 of the License, or (at your option)
# any... | jooolia/oligotyping | Oligotyping/lib/decomposer.py | Python | gpl-2.0 | 66,381 | [
"BLAST"
] | 6b670dc2c0618f916d900dbbfe190b94382d07b01a0bf7f946faaf34a37af630 |
#!/usr/bin/env python
import sys
import os
import re
from lib2to3.pgen2.driver import Driver
from lib2to3 import pygram, pytree
from lib2to3.pytree import Node, Leaf, type_repr
from lib2to3.pygram import python_symbols
def sym_type(name):
return getattr(python_symbols, name)
def new_node(name):
return Node(... | spaceone/pyjs | pyjs/translator_dict.py | Python | apache-2.0 | 116,954 | [
"VisIt"
] | 6e5d56b364413cbe2bf221308f4202f8ab803571c56b2efcf09fa26345ec5e43 |
#
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | fweik/espresso | doc/tutorials/active_matter/exercises/rectification_geometry.py | Python | gpl-3.0 | 3,519 | [
"ESPResSo",
"ParaView",
"VTK"
] | d0358596c5177c18c708c6f58f8cf1ea0a234ef3f69e8cd34d05ead012c83188 |
#! /usr/bin/env python
#
# Copyright (C) 2016 Jing Lu <ajingnk@gmail.com>
# License: Apache
# -*- coding: utf-8 -*-
# pylint: disable=too-few-public-methods
from distutils.core import setup, Extension
from setuptools.command.install import install
from distutils import log # needed for outputting information messag... | ajing/ChemTree | backend/setup.py | Python | apache-2.0 | 1,868 | [
"RDKit"
] | 49918ab001f1005a8e48853a16c22a86be036394a1772d73cf30dfcdfde8ba68 |
"""Effective medium theory potential."""
from math import sqrt, exp, log, pi
import numpy as np
import sys
from ase.data import atomic_numbers, chemical_symbols
from ase.units import Bohr
parameters = {
# E0 s0 V0 eta2 kappa lambda n0
# eV bohr eV bohr^-1 bohr^-1 bohr^-1... | freephys/python_ase | ase/calculators/emt.py | Python | gpl-3.0 | 11,158 | [
"ASE"
] | 7a8ff93e1398de876b573d745da913f24021693b2d683230edaf736b80df0ec9 |
# -*- coding: UTF-8 -*-
from unittest import TestCase
class TestVtk(TestCase):
def test_ust_from_blk(self):
from nose.plugins.skip import SkipTest
try:
import vtk
except ImportError:
raise SkipTest
from ..testing import get_blk_from_sample_neu
from ... | yungyuc/solvcon | solvcon/tests/test_visual.py | Python | bsd-3-clause | 1,185 | [
"VTK"
] | 30b14e1953ef799a77f7aa765f93e63af36b8169457a6b36ffdc710fece840d9 |
from ase.calculators.jacapo.pw91_psp import defaultpseudopotentials as psp
from ase.tasks.calcfactory import calculator_factory
from ase.test.tasks.dcdft import DeltaCodesDFTTask as Task
xc = 'PBE'
fit = (5, 0.02)
w = 0.06
pw = 700
dw = 1000
kd = 8.0
tag = 'dcdft_%s_jacapo' % xc.lower()
calcfactory = calculator... | robwarm/gpaw-symm | gpaw/test/big/dcdft/pbe_jacapo.py | Python | gpl-3.0 | 1,673 | [
"ASE"
] | c910cd5f0c2a4bc81d7c974d0395dff6bd8c0ac9eb7c2072b2c9e7788d1751e5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import vtk
def main():
colors = vtk.vtkNamedColors()
colors.SetColor("BkgColor", [26, 51, 102, 255])
surface = vtk.vtkParametricKuen()
source = vtk.vtkParametricFunctionSource()
renderer = vtk.vtkRenderer()
mapper = vtk.vtkPolyDataMapper()
... | lorensen/VTKExamples | src/Python/GeometricObjects/ParametricKuenDemo.py | Python | apache-2.0 | 8,040 | [
"VTK"
] | c952f29e79090dada2263dcd9fc2c83a8647dca859ee17f3738b664d65766911 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
class Migration(migrations.Migration):
dependencies = [
('visit', '0024_auto_20150521_0211'),
]
operations = [
migrations.AddField(
model_name='caregiver',
na... | koebbe/homeworks | visit/migrations/0025_auto_20150614_1727.py | Python | mit | 660 | [
"VisIt"
] | 342932e34f34c91bf6769aec1580343413bd78e79915b36503b2bd92cf8839ff |
import os
import logging
import socket
from dessn.framework.fitter import Fitter
from dessn.framework.models.approx_model import ApproximateModel, ApproximateModelOl, ApproximateModelW
from dessn.framework.simulations.simple import SimpleSimulation
if __name__ == "__main__":
logging.basicConfig(level=logging.DEBUG... | dessn/sn-bhm | dessn/configurations/simple_w_shift.py | Python | mit | 4,684 | [
"Gaussian"
] | 9d79d90f1c1dc9f255f1ca9343c4eed85e88a208297202b9725d9ebf1a05f37a |
import os
import shutil
import stat
from pymatgen.io.vasp.inputs import Kpoints
# points k
kx, ky, kz = 4, 4, 4
# job name :
# * doit finir par .job
# ou
# * doit commencer par j
job = "test.job"
basename = "test"
lancer = "#!/bin/bash\n\n"
for U in [0, 2, 4, 6, 8, 10]:
print("U = %f" % U)
# make... | gVallverdu/myScripts | VASP/runU.py | Python | gpl-2.0 | 1,278 | [
"VASP",
"pymatgen"
] | b7127a9ab35d277aae5cd3f717f40e3f842fe75fcdc0d11e4f10505f9dff711f |
import numpy as np
from numpy.random import multivariate_normal as multi_norm
from scipy.spatial import cKDTree as ckdt
from collections import defaultdict
from scipy.stats import norm
import warnings
class GMM: # gaussian mixture model
def __init__(self, pis, params):
self.params = params # [[mu1, sig1... | mathnathan/notebooks | dissertation/experiments/2019-07-31-05.43/Brain.py | Python | mit | 6,598 | [
"Gaussian",
"NEURON"
] | 76fcc2f7be370420e8e5e33d00cd4481cdea777cb7da25b26816440c40e1fe48 |
# Copyright 2000 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""This provides code for a general Naive Bayes learner.
Naive Bayes is a supervised classifi... | dbmi-pitt/DIKB-Micropublication | scripts/mp-scripts/Bio/NaiveBayes.py | Python | apache-2.0 | 7,693 | [
"Biopython"
] | 92847e1d27a823baf1e4ef29a151f32d41763940d3c32629df883a98b229b34e |
# -*- coding: utf-8 -*-
# Copyright(C) 2012-2014 Laurent Bachelier
#
# This file is part of weboob.
#
# weboob is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at ... | frankrousseau/weboob | weboob/browser/browsers.py | Python | agpl-3.0 | 25,017 | [
"VisIt"
] | 75503b9600f6e2bbb1737cfbfdf49c300680405b3d57214fab08be232609f482 |
# Copyright (C) 2012 Alex Nitz
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the... | soumide1102/pycbc | pycbc/waveform/waveform.py | Python | gpl-3.0 | 43,575 | [
"Gaussian"
] | 9528e90e224974f9c51f31869e22c074d214835ca8ed56a414dfce7996eab3ab |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright: Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
... | ilpianista/ansible | lib/ansible/modules/packaging/os/dpkg_selections.py | Python | gpl-3.0 | 2,169 | [
"Brian"
] | 6d684bb79878b6fa8e160c16012c4490ff67f73dcd74999c601dec36d81a3c49 |
from datetime import datetime, date
import types
import tempfile
import tarfile
import ocgis
from ocgis import RequestDataset
import datetime as dt
import os
from flyingpigeon import analogs
from pywps.Process import WPSProcess
import logging
class AnalogsProcess(WPSProcess):
def __init__(self):
# defini... | sradanov/flyingpigeon | flyingpigeon/processes/wps_analogs.py | Python | apache-2.0 | 8,822 | [
"NetCDF"
] | 75df6e0c24087ce01946059556b0f2a2e51cde865053fe8ee5a09a9d9a0dfbf4 |
#!/usr/bin/env python
#
# This file is part of Buildbot. Buildbot is free software: you can
# redistribute it and/or modify it under the terms of the GNU General Public
# License as published by the Free Software Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# A... | anish/buildbot | worker/setup.py | Python | gpl-2.0 | 4,807 | [
"Brian"
] | 98ab8e1c5833e3dbb4ce0373aa3b4d75ad4a2929d05e321c493d92a35cabc41d |
import json
import sys
from collections import OrderedDict
from pathlib import Path
from pytput import print_red, tput_print
from rtfm.model import Filter, Item, Properties
from rtfm.tagger import EyeD3ApiTagger
class Library:
def __init__(self):
self.items = {}
def load(self, file: Path):
wi... | essembeh/RegexTagForMusic | src/rtfm/core.py | Python | gpl-3.0 | 4,759 | [
"VisIt"
] | 0a43471abaf3708b725126fdb5ca80fca050f6b5d684c81d53635bf3fef257aa |
from math import sqrt,log
import numpy as np
from matplotlib import pyplot
import rft1d
def here_cca_single_node(y, x):
N = y.shape[0]
X,Y = np.matrix(x.T).T, np.matrix(y)
Z = np.matrix(np.ones(N)).T
Rz = np.eye(N) - Z*np.linalg.inv(Z.T*Z)*Z.T
XStar = Rz * X
YStar = R... | 0todd0000/rft1d | rft1d/examples/val_max_7_cca_1d.py | Python | gpl-3.0 | 2,425 | [
"Gaussian"
] | 7c50f20810e0c49f0a345f58200e5b15935047931866234f5840ee0d5449347f |
#
# Copyright (c) 2009, Novartis Institutes for BioMedical Research Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyri... | rdkit/rdkit-orig | Contrib/LEF/CreateFps.py | Python | bsd-3-clause | 4,644 | [
"RDKit"
] | 0ff44d9bb298a7feed6088e2edc316d652c7c8ff09407b5f36cec6ae53e704ec |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jH0ward/psi4 | psi4/driver/molutil.py | Python | lgpl-3.0 | 10,050 | [
"Psi4"
] | 83eb0e3d86e2e59dc2ec3012b18fc3ae9d7bc99bc00c5e8214945aa76ad330da |
#pylint: disable=C0111
#pylint: disable=W0621
from lettuce import world, step
from common import create_studio_user
from django.contrib.auth.models import Group
from auth.authz import get_course_groupname_for_role, get_user_by_email
from nose.tools import assert_true # pylint: disable=E0611
PASSWORD = 'test'
EMAIL_E... | praveen-pal/edx-platform | cms/djangoapps/contentstore/features/course-team.py | Python | agpl-3.0 | 5,961 | [
"VisIt"
] | 0ccb6277beb7040aecf8064bede0a440cebfc6eb722eddbd7338e6fda348d48b |
#!/usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-compile-externals
# Author : Adria Casajus
########################################################################
"""
Compile DIRAC externals (does not require DIRAC code)
"""
__RCSID__ = "$Id$"... | Sbalbp/DIRAC | Core/scripts/dirac-compile-externals.py | Python | gpl-3.0 | 9,972 | [
"DIRAC"
] | 106d120f3c2153f8e61e8845ea290568ae6e5ee0c2afc694caf86a213a774a18 |
#!/usr/bin/env python
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
#... | andysim/psi4 | psi4/share/psi4/fsapt/fsapt.py | Python | gpl-2.0 | 24,551 | [
"Psi4"
] | de424eee84d4540a1b3b494b5f580a72720a647515eb6e03c8c57680902fecc8 |
from PIL import Image
from io import BytesIO
from django.test import TestCase, RequestFactory, Client
from django.contrib.auth.models import AnonymousUser, User
from .views import uploadImageToSite, renderDataBaseImage
from .models import ImageModel
from django.core.files.uploadedfile import InMemoryUploadedFile
fro... | BDague/generic-image-server | genericImageServer/imageViewer/tests.py | Python | mit | 3,109 | [
"Brian"
] | ff274ad9fc4fc57ebf19bea26f06f1c8d5c36077bc4d100f537cc55e6976d730 |
#!/usr/bin/env python
import sys, os
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
setup_args = {}
install_requires = ['param>=1.3.2', 'numpy>=1.0']
extras_require={}
# Notebook dependencies of IPython 3
extras_require['notebook-dependencies'] = ['ipython', 'pyzmq', ... | vascotenner/holoviews | setup.py | Python | bsd-3-clause | 4,882 | [
"VisIt"
] | 34cdcb7a164f0cbd127784b5977af4dcd9da25bf27c84a7d8444ed6ee23c1840 |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | test/test_plan_medicare.py | Python | apache-2.0 | 10,005 | [
"VisIt"
] | 6a14b2a58175f478ef421c8b4e825335cbb9c6daf758f755807d8a4694f73927 |
"""
A simple testing framework for lldb using python's unit testing framework.
Tests for lldb are written as python scripts which take advantage of the script
bridging provided by LLDB.framework to interact with lldb core.
A specific naming pattern is followed by the .py script to be recognized as
a module which impl... | apple/swift-lldb | packages/Python/lldbsuite/test/dotest.py | Python | apache-2.0 | 42,528 | [
"VisIt"
] | 78f82d515d7d582d61a61532829841445a9ccda32e6f1c98bc7840ede13ce903 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkImageDataStreamer(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | nagyistoce/devide | modules/vtk_basic/vtkImageDataStreamer.py | Python | bsd-3-clause | 497 | [
"VTK"
] | beb9085394629c1aa387debc04edcaec135f5da4c50efb0e3227ac8f0ecc45b5 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/modules/network/avi/avi_applicationpersistenceprofile.py | Python | bsd-3-clause | 6,497 | [
"VisIt"
] | 6f725bb2f3be82c5c7ee535b3b271c9819c8f7b0666dc0ce67c66693895a114f |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | modules/navier_stokes/test/tests/ins/jeffery_hamel/jeffery_hamel.py | Python | lgpl-2.1 | 10,689 | [
"MOOSE"
] | e8af8fbca4a0eab6fb38932f36c618c7aa6a0eb53bb724d2b430f3023eb2c990 |
from __future__ import print_function
import os
import sys
from pyspark import SparkContext, SQLContext
import pyspark.sql.functions as sql
import pyspark.sql.types as types
import unicodecsv
from dateutil.parser import parse
sc = SparkContext(appName="BHLParquet")
sqlContext = SQLContext(sc)
def as_int(s):
retu... | bio-guoda/guoda-datasets | BHL/build_parquet.py | Python | mit | 4,501 | [
"Elk"
] | 7b5e2625192071d24e8ec28bd42f51b0b4784f93d23073cf81c97cee14daa1e1 |
"""
This module contains tests for tofu.geom in its structured version
"""
# External modules
import os
import itertools as itt
import numpy as np
import matplotlib.pyplot as plt
import warnings as warn
# Importing package tofu.gem
import tofu as tf
from tofu import __version__
import tofu.defaults as tfd
import tofu... | ToFuProject/tofu | tofu/tests/tests01_geom/test_04_core_optics.py | Python | mit | 14,005 | [
"CRYSTAL"
] | f4b23b36a59d033cb0c88661c76300d9713ec2f9930e21d8a9a66e3a37707d44 |
'''
From the original motif scanning, selects those events withing a particular window of a gene and outputs the
tgm, geneids and tf ids for final analysis
'''
__author__='sara jc gosline'
__email__='sgosline@mit.edu'
import re,os,sys
from optparse import OptionParser
from collections import defaultdict
import numpy ... | agitter/OmicsIntegrator | scripts/get_window_binding_matrix.py | Python | bsd-2-clause | 10,721 | [
"Galaxy"
] | d1f7917ba1c7ec4bef143d010f8482bec4c6d721cfb4bc99fdac2e1f1401e89d |
from __future__ import print_function, division
__all__ = ['load', 'clone', 'Compound', 'Particle']
import collections
from collections import OrderedDict, defaultdict
from copy import deepcopy
import itertools
import os
import sys
import tempfile
from warnings import warn
import mdtraj as md
import numpy as np
from... | ctk3b/mbuild | mbuild/compound.py | Python | mit | 74,560 | [
"Amber",
"LAMMPS",
"MDTraj",
"Open Babel",
"OpenMM"
] | f84115acf59aa4ddea31bd2522201ea0ad5e5200f41ca9dd06979177fcc3171f |
"""
:class:`DominatorTree` computes the dominance relation over
control flow graphs.
See http://www.cs.rice.edu/~keith/EMBED/dom.pdf.
"""
class GenericDominatorTree:
def __init__(self):
self._assign_names()
self._compute()
def _traverse_in_postorder(self):
raise NotImplementedError
... | JQIamo/artiq | artiq/compiler/analyses/domination.py | Python | lgpl-3.0 | 4,947 | [
"VisIt"
] | feb3da3f7429da7febe795f1d88e75a66c77ffd2aeea6c3b49fa89c7203573e8 |
# -*- coding: utf-8 -*-
"""
Created on Thu Jan 5 19:05:00 2012
@author: Sat Kumar Tomer
@website: www.ambhas.com
@email: satkumartomer@gmail.com
"""
# import required modules
import numpy as np
import xlrd
import os
from gdalconst import *
from scipy.interpolate import Rbf
from Scientific.IO import NetCDF as nc
/h... | andreas-koukorinis/ambhas | examples/test_csglm.py | Python | lgpl-2.1 | 966 | [
"NetCDF"
] | d6b46c20ae8f6ce6f7f7bfcffe00594d0235c9f8ea5055943fafc957a39493be |
# -*- coding: utf-8 -*-
"""
Created on Wed Aug 14 09:55:12 2013
@author: a001693
"""
def klassning_NP_vinter(TYP,year_start,year_end,data_dict,infil_stationer):
'''Statusklassa DIN, DIP, tot-N och tot-P i (TYP,startår,slutår,dictionary) allt som strängar'''
# ¸.·´¯`·.´¯`·.¸¸.·´¯`·.¸><(((º> ¸.·´¯`·.´... | ekostat/ekostat_calculator | test_data/klassning_NP_vinter_func_enligt_BG.py | Python | mit | 74,630 | [
"VisIt"
] | a409f81a7dbff6ff7f56a819b33f940cdecc316534162608054e6acf494a30e4 |
#!/usr/bin/env python
__author__ = "waroquiers"
import os
import unittest
import numpy as np
from pymatgen.analysis.chemenv.coordination_environments.coordination_geometries import (
AllCoordinationGeometries,
)
from pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder import (
... | gmatteo/pymatgen | pymatgen/analysis/chemenv/coordination_environments/tests/test_coordination_geometry_finder.py | Python | mit | 10,714 | [
"pymatgen"
] | d7dbfd7cfa9cfb0d0b498abaaf7733836eccb74454b41eb88a5cac73cd4c2a63 |
"""
Plots the 2D grid using ParaView.
cli: pvbatch plotMesh2dParaView.py <arguments>
"""
import os
import sys
import argparse
import paraview
from paraview.simple import *
sys.path.append(os.environ['SNAKE'])
from snake import miscellaneous
def parse_command_line():
"""Parses the command-line."""
print('[info]... | mesnardo/snake | snake/openfoam/plotMesh2dParaView.py | Python | mit | 3,635 | [
"ParaView"
] | 1eb76f5bbbdaa2592e80b159f3b879a8f416a2e6172bc787b4d8ed1edd7faa40 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright 2015-2016 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#... | Jokeren/neon | examples/alexnet.py | Python | apache-2.0 | 4,358 | [
"Gaussian"
] | 27662a51e5a74a79f7aeebe5c1cc2241dd6e82f2bee148d7f2589552792e2cbf |
import argparse
import os
from coalib.misc import Constants
from coalib.parsing.filters import available_filters
# argcomplete is a delayed optional import
# This variable may be None, the module, or False
argcomplete = None
class CustomFormatter(argparse.RawDescriptionHelpFormatter):
"""
A Custom Formatter... | coala/coala | coalib/parsing/DefaultArgParser.py | Python | agpl-3.0 | 11,863 | [
"VisIt"
] | 819eed81688c851f76cdb643c0beb87463516e3d1254c4d463d0baf5f654d5f2 |
# Custom GPAW setup for Intel MICs (KNC)
import os
# use Intel compiler and MPI
compiler = 'mpiicc'
mpicompiler = 'mpiicc'
mpilinker = 'mpiicc'
# use MKL
mklroot = os.environ['MKLROOT']
library_dirs += [mklroot + '/lib/intel64/']
libraries = ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core',
'mkl_lapack9... | mlouhivu/gpaw-mic-install-pack | install/setup/customize-knc.py | Python | mit | 1,270 | [
"GPAW"
] | 786e3872bbcb903b55e8bc15827e3900a6afe19d2b0780e7dabaae71483dcbc3 |
# gus.mb, an open source flow solver.
# Copyright (C) 2016 Hiromasa Kato <hiromasa at gmail.com>
#
# This file is part of gus.mb.
#
# gus.mb is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, ei... | butakun/gus.mb | IO/Pre.py | Python | gpl-3.0 | 6,058 | [
"VTK"
] | 9382bb2700b42480f1f342a0d9664441ff6bc74a25fb37f74ab35ba72ab375de |
# -*- coding: utf-8 -*-
# source: https://raw.githubusercontent.com/mahmoud/boltons/18.0.0/boltons/timeutils.py
# version: 18.0.0
# date: 2018-07-11
"""Python's :mod:`datetime` module provides some of the most complex
and powerful primitives in the Python standard library. Time is
nontrivial, but thankfully its support... | huguesv/PTVS | Python/Product/Miniconda/Miniconda3-x64/Lib/site-packages/conda/_vendor/boltons/timeutils.py | Python | apache-2.0 | 19,079 | [
"VisIt"
] | ecdfb94d780be0791f804961b5c871c03e9cb7f9158ef0b4c3cdad486fef3dd2 |
#! /usr/bin/env python
import re
import math
import collections
import numpy as np
import time
import operator
from scipy.io import mmread, mmwrite
from random import randint
from sklearn import cross_validation
from sklearn import linear_model
from sklearn.grid_search import GridSearchCV
from sklearn import preproces... | freedomljc/Loan_Default_Prediction | predict.py | Python | bsd-3-clause | 14,579 | [
"Gaussian"
] | c38d9a1f813e860c743c2d5698024c1cad507ee5054d91873ef34b3a81608b98 |
import sys
import maya.OpenMaya as OpenMaya
import maya.OpenMayaMPx as OpenMayaMPx
import maya.cmds as cmds
kPluginNodeName = "MitsubaPlasticShader"
kPluginNodeClassify = "/shader/surface"
kPluginNodeId = OpenMaya.MTypeId(0x87006)
class plastic(OpenMayaMPx.MPxNode):
def __init__(self):
OpenMayaMPx.MPxNode... | hpd/MitsubaForMaya | plug-ins/mitsuba/materials/plastic.py | Python | mit | 6,985 | [
"Amber"
] | f3565316e9052d33561da9225feb997bbc9837a05c8dab3346b07ea40addc783 |
import numpy as np
from osgeo import gdal
import mayavi.mlab as mlab
import utils
import shapeways_io
gdal.UseExceptions()
def main():
z, x, y = read('data/alaska/clipped_elev.tif')
rgb, _, _ = read('data/alaska/clipped_map.tif')
rgb = np.swapaxes(rgb.T, 0, 1)
fig = mlab.figure()
surf = mlab.m... | joferkington/scipy2015-3d_printing | alaska_no_sides.py | Python | mit | 1,488 | [
"Mayavi"
] | ae8cbf689121ae12ebd5448c764b6201072cede9b429405c58cd33de123c016b |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/enigma2-plugin-extensions-openwebif | plugin/controllers/views/mobile/satfinder.py | Python | gpl-2.0 | 8,282 | [
"VisIt"
] | 6e2658f6d3dbf01314684c9e7a72fa248a169f15d14ba93e97f4c761088bddcd |
import sys
import os
import numpy as np
import h5py
import multiprocessing
import cPickle
import matplotlib.pyplot as plt
import itertools
from scipy.stats import sigmaclip
from sklearn.gaussian_process import GaussianProcess
notes = """
In this case, we do a 3-d gaussian interpolation. The elevations are read from
... | acbecker/solar | gp5/gp5.py | Python | mit | 9,299 | [
"Gaussian"
] | 1064b63be215662c53f8182b0a39075e954c1b43824e9ba9ec832cb66bfffaba |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright 2010 British Broadcasting Corporation and Kamaelia Contributors(1)
#
# (1) Kamaelia Contributors are listed in the AUTHORS file and at
# http://www.kamaelia.org/AUTHORS - please extend this file,
# not this notice.
#
# Licensed under the Apache License, Ver... | sparkslabs/kamaelia | Sketches/MH/pixformatConversion/Dirac3D.py | Python | apache-2.0 | 2,218 | [
"DIRAC"
] | 9efcc7791c46b554ca70d87d90895682ef6a11a989f0b77a1b81ed7bbc685c10 |
# coding: utf-8
from __future__ import unicode_literals
import time
import datetime
import os
from django.contrib.auth.models import Permission
from django.conf import settings
from django.core import mail
from django.core.cache import cache
from django.core.urlresolvers import reverse
from django.core.exceptions imp... | zekone/dj_pybb | pybb/tests.py | Python | bsd-2-clause | 83,908 | [
"VisIt"
] | e06776b431941347fce80186d98588d9552e18b22cd3c32c60cdea1cd7a629aa |
#!/usr/bin/python
# coding=utf-8
"""
Chupycabra: A jabber python library
Copyright (C) 2009, 2016 A. R. Diederich
Much is based on jabberpy, (C) 2001 Matthew Allum
See the file LICENSE for copying permission.
__intro__
Chupycabra is a python module for the jabber instant messaging protocol.
The libr... | andrewdied/chupycabra | chupycabra/chupycabra.py | Python | lgpl-3.0 | 61,765 | [
"exciting"
] | dc4d94843e3759bdf61f06c378b29343e4cc4873f7e719f0f237c839bef8fc57 |
"""Contains code for an Open Pixel Controller hardware for RGB LEDs."""
# openpixel.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
# The python code to bu... | jabdoa2/mpf | mpf/platform/openpixel.py | Python | mit | 11,386 | [
"Brian"
] | 997575d7b7f1c1bdd2ba7b6b22e5a9177855239c08d820ff5ca9b666b0841f38 |
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