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from math import sqrt,log
import numpy as np
from matplotlib import pyplot
import rft1d
eps = np.finfo(float).eps
def here_cca_single_node(y, x):
N = y.shape[0]
X,Y = np.matrix(x.T).T, np.matrix(y)
Z = np.matrix(np.ones(N)).T
Rz = np.eye(N) - Z*np.linalg.inv(Z.T*Z)*Z.... | 0todd0000/rft1d | rft1d/examples/val_broken_4_X2.py | Python | gpl-3.0 | 2,803 | [
"Gaussian"
] | 0710374fb5e872cfaaaf6a8f36f31aa03ab57095b2d5739798baa772b5f73ebe |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | sam-m888/gramps | gramps/plugins/webreport/source.py | Python | gpl-2.0 | 12,328 | [
"Brian"
] | 660b60828843cc772ffa4c1aabc44f62b82f1530fe193d3efee0139a5e1a6be6 |
"""
Artificial Intelligence for Humans
Volume 1: Fundamental Algorithms
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2013 by Jeff Heaton
Licensed under the Apache License, Version 2.0 (the "License");
... | PeterLauris/aifh | vol1/python-examples/test/aifh/test_rbf_network.py | Python | apache-2.0 | 3,420 | [
"Gaussian",
"VisIt"
] | fbbc287e617da47d596dd20f6e483a0f412d6bd85947160a78f9c76be909790f |
# -*- coding: utf-8 -*-
# Part of Odoo. See LICENSE file for full copyright and licensing details.
"""
Miscellaneous tools used by OpenERP.
"""
from functools import wraps
import cPickle
import cProfile
from contextlib import contextmanager
import subprocess
import logging
import os
import passlib.utils
import socke... | akhmadMizkat/odoo | openerp/tools/misc.py | Python | gpl-3.0 | 36,562 | [
"VisIt"
] | 5a6be6a98f73acd99c01e0a70a16041741d1a44190ac9eecd5eef5b2fc117b49 |
import ocl
import pyocl
import camvtk
import time
import datetime
import vtk
def main():
print(ocl.revision())
myscreen = camvtk.VTKScreen()
myscreen.camera.SetPosition(-15, -8, 15)
myscreen.camera.SetFocalPoint(0,0, 0)
# axis arrows
camvtk.drawArrows(myscreen,center=(0,0,0))
s = o... | aewallin/opencamlib | src/attic/ocode/cutsim_test_5_mc_resolution_anim.py | Python | lgpl-2.1 | 2,329 | [
"VTK"
] | 3701f7f8a4c4d654d2b43c3322cc64b6506c3228897f9ae5d3bc2f0a26628193 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/plugins/songs/lib/ewimport.py | Python | gpl-2.0 | 14,123 | [
"Brian"
] | b96e29a7d797b9bb04baaadfe7effd37293f00c007b0508105a818906ec4f7fb |
# Copyright 2012 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | haoyuchen1992/CourseBuilder | modules/dashboard/analytics.py | Python | apache-2.0 | 27,628 | [
"VisIt"
] | fef5eaecde8ffa58cdb7e34b702a39c356008e8f98513d108d303d5210495589 |
#!/usr/bin/env python2
from __future__ import division
from math import *
import sys, os
import h5py
from optparse import OptionParser
from numpy import *
try:
from matplotlib import cm, pyplot, ticker
from mpl_toolkits.mplot3d import Axes3D
except ImportError as e:
print "Couldn't import matplotlib:", str... | luosaiyu/itp2d | scripts/plot_potential.py | Python | gpl-3.0 | 3,399 | [
"Mayavi"
] | 32413754645baf8af2b016571032649cc9300df142521e9dcfc752f68b59ae21 |
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | keras-team/keras | keras/layers/kernelized_test.py | Python | apache-2.0 | 15,972 | [
"Gaussian"
] | 9a17771c282ce6b702fae84577cf9b642da3f22f417fd2587a126d27661ae78e |
# mako/pyparser.py
# Copyright (C) 2006-2012 the Mako authors and contributors <see AUTHORS file>
#
# This module is part of Mako and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""Handles parsing of Python code.
Parsing to AST is done via _ast on Python > 2.5, otherwise th... | swangui/ggrid | mako/pyparser.py | Python | mit | 18,083 | [
"VisIt"
] | 7e4d915c4f06ccaecabcae8a7dc12fa6a41bcdbc89bd98e93af84fc4fdaba0d1 |
# Copyright 2014 Diamond Light Source Ltd.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | rcatwood/Savu | savu/plugins/filters/fitters/base_fluo_fitter.py | Python | gpl-3.0 | 8,790 | [
"Gaussian"
] | 28b7605753f70de38973fe8d9e38b422c600f1859ec6620722f6d381e3be6258 |
'''
Mesh
====
'''
import copy
class Nodes(object):
'''
Manages nodes for finite element modeling pre/postprocessing and further graphical representations.
:param labels: list of node labels.
:type labels: list of int > 0
:param x: x coordinate of nodes.
:type x: list floats
:param y: y coordinate... | lcharleux/abapy | abapy/mesh.py | Python | gpl-2.0 | 95,476 | [
"ParaView",
"VTK"
] | 35926aa7879abfac227f94f8c88639a2b2a2d810e1bd81c4a68711bb70d1d63b |
import logging
from celeryutils import task
from mkt.feed.models import FeedApp, FeedCollection
log = logging.getLogger('z.feed')
@task
def _migrate_collection_colors(ids, model):
"""Migrate deprecated background color (hex) to color (name)."""
cls = FeedApp
if model == 'collection':
cls = FeedC... | clouserw/zamboni | mkt/feed/tasks.py | Python | bsd-3-clause | 1,042 | [
"Amber"
] | a781a04154f42330b21abce6c08bb0f7451469f9e3920bcc1fad77e0e6af1fca |
"""
cclib (http://cclib.sf.net) is (c) 2006, the cclib development team
and licensed under the LGPL (http://www.gnu.org/copyleft/lgpl.html).
"""
__revision__ = "$Revision: 238 $"
from PyQt4 import QtGui,QtCore
class Qt4Progress(QtGui.QProgressDialog):
def __init__(self, title, parent=None):
QtGui.QPr... | faribas/RMG-Java | source/cclib/progress/qt4progress.py | Python | mit | 996 | [
"cclib"
] | 231d59b47a49cd5a7761fe851f6867c52fbf09f0ad1dff2323878ed12dcd04b2 |
#!/usr/bin/env python
########################################################################
# File : dirac-wms-job-status
# Author : Stuart Paterson
########################################################################
"""
Retrieve status of the given DIRAC job
Example:
$ dirac-wms-job-status 2
JobID=2 S... | DIRACGrid/DIRAC | src/DIRAC/Interfaces/scripts/dirac_wms_job_status.py | Python | gpl-3.0 | 2,205 | [
"DIRAC"
] | aa6f96f574a180b18c14ff70fbc8561b0635c676597ca507426124ed87085111 |
from collections import deque
from fastnet import argparse, util, layer, data
from fastnet.checkpoint import CheckpointDumper, DataDumper, MemoryDataHolder
from fastnet.layer import TRAIN, TEST
from fastnet.net import FastNet
from fastnet.parser import parse_config_file, load_model
from fastnet.scheduler import Schedul... | rjpower/fastnet | fastnet/trainer.py | Python | gpl-3.0 | 22,105 | [
"NEURON"
] | 9bbb76d8c486a25faa91d9e4da3639617c1a3ecde27ad5c16dadb67cdb4a9aa0 |
'''
Created on 2009-09-08
@author: beaudoin
Contains a abstract syntactic tree visitor for printing
nested function calls in a nice way. Used for cleaning-up
output of the serialize method.
See the python standard ast module for details.
'''
import ast
class Fancify( ast.NodeVisitor ):
de... | Banbury/cartwheel-3d | Python/PyUtils/Fancify.py | Python | apache-2.0 | 3,358 | [
"VisIt"
] | 430ecbb96c147fc464b3a7d760102fcf44d4e97e4a85794f1054126309401f90 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | drpngx/tensorflow | tensorflow/contrib/autograph/pyct/qual_names.py | Python | apache-2.0 | 7,395 | [
"VisIt"
] | bd37130384ced460b8d27212be2f6fe5ccd089438b9cd9f81b0124398bb09333 |
"""
Upload class
"""
from galaxy.web.base.controller import *
from galaxy.util.bunch import Bunch
from galaxy.tools import DefaultToolState
from galaxy.tools.parameters.basic import UnvalidatedValue
from galaxy.tools.actions import upload_common
import logging
log = logging.getLogger( __name__ )
class AddFrameData:
... | volpino/Yeps-EURAC | lib/galaxy/web/controllers/tool_runner.py | Python | mit | 10,594 | [
"Galaxy"
] | 8a6bf6618e784c24477b222c9f350b28b27c35778d4cfdeaaa7355d3f71b357c |
# Orca
#
# Copyright 2005-2008 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/scripts/apps/evolution/script.py | Python | gpl-3.0 | 60,606 | [
"ORCA"
] | 625e79e655d035d7703558c4a16b1575939d49372adbfafede612de38b96cdf4 |
"""
============
django-slack
============
-------------------------------------
Seamless Slack integration for Django
-------------------------------------
This project provides easy-to-use integration between
`Django <http://www.djangoproject.com/>`_ projects and the
`Slack <https://www.slack.com>`_ group chat and ... | NejcZupec/django-slack | django_slack/__init__.py | Python | bsd-3-clause | 6,142 | [
"VisIt"
] | 6b876f5a9fa2473443181a5db66884c67932031b55096563d0b173185b1e594c |
# Copyright (C) 2009 by Eric Talevich (eric.talevich@gmail.com)
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Classes corresponding to Newick trees, also used for Nexus trees.
See classes in Bio... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/Phylo/Newick.py | Python | gpl-2.0 | 1,084 | [
"Biopython"
] | 1b37df1b29e0c192b617a96e29e612a5af7f5323dab676dcf489a061a1d74953 |
import os
import vtkAll as vtk
import math
import time
import numpy as np
from director import callbacks
from director import transformUtils
from director import lcmUtils
from director import objectmodel as om
from director.utime import getUtime
from director import robotstate
try:
import robotlocomotion as lcmrl... | mitdrc/director | src/python/director/robotplanlistener.py | Python | bsd-3-clause | 10,066 | [
"VTK"
] | 5a4190c99a0fbac83ce43c6eaaafc824b75167557b65d5d1fd8f14467b27fba7 |
import os
import unittest
from __main__ import vtk, qt, ctk, slicer
class CardiacMRIToolkitSelfTest:
def __init__(self, parent):
parent.title = "CardiacMRIToolkitSelfTest"
parent.categories = ["Testing.TestCases"]
parent.dependencies = []
parent.contributors = ["Salma Bengali (CARMA), Alan Morris (C... | carma-center/carma_slicer_extension | Testing/Python/CardiacMRIToolkitSelfTest.py | Python | bsd-2-clause | 11,432 | [
"Brian",
"VTK"
] | e5bb68c735ed7f8eb19d73e88541ae702126d97ab8e4c338c3233335d297c67f |
#! /usr/bin/env python
"""
Parses a hit table and prints out a fasta database of the hits.
Source fasta data must be supplied via STDIN or the -i flag.
"""
from math import floor
from Bio import SeqIO, SeqRecord
from edl.util import add_universal_arguments, setup_logging, InputFile
from edl.blastm8 import add_... | jmeppley/py-metagenomics | get_sequences_from_m8.py | Python | mit | 10,197 | [
"BLAST"
] | 4b151ad80a43587e2dd43ec73748c78184159ff34bea35c76687c39d824f91a8 |
from ASE.Filters.Join import Join
import Asap.fixepydoc
Asap.fixepydoc.fix(Join)
| auag92/n2dm | Asap-3.8.4/Python/asap3/Filters/Join.py | Python | mit | 81 | [
"ASE"
] | 0c49a5a497f7130f8ed880ba70b588a7e9fb5c280dd26c7a26bb17c649bf71c3 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Created on Wed Dec 16 11:25:10 2015
@author: david
"""
import os
import sys
import time
import types
import datetime
import unittest
import subprocess
import shutil
import filecmp
import glob
import random
import csv
import argparse
import numpy as np
from itertools ... | davidemms/OrthoFinder | tests/test_orthofinder.py | Python | gpl-3.0 | 65,229 | [
"BLAST"
] | ac87919a1379a3477858b9fb0c294af1a4703e6f65827b87aec8cac8f5b543fd |
# -*- coding: utf-8 -*-
"""
inflection
~~~~~~~~~~~~
A port of Ruby on Rails' inflector to Python.
:copyright: (c) 2012-2015 by Janne Vanhala
:license: MIT, see LICENSE for more details.
"""
import re
import unicodedata
__version__ = "0.3.1"
PLURALS = [
(r"(?i)(quiz)$", r"\1zes"),
(r"(?i... | prophile/jacquard | jacquard/odm/inflection/__init__.py | Python | mit | 11,335 | [
"Octopus"
] | 6d097987c51989615d88ae5ab48a9c4491cb23dd3f1011992ec2157df0d0ef33 |
# -*- Mode: Python; coding: utf-8; indent-tabs-mode: nil; tab-width: 4 -*-
### BEGIN LICENSE
# Copyright (C) 2013 Brian Douglass bhdouglass@gmail.com
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License version 3, as published
# by the Free Softwa... | bhdouglass/remindor-common | remindor_common/helpers.py | Python | gpl-3.0 | 31,675 | [
"Brian"
] | b345d9c231c9509cef959cf63b0db290b19232eaf3c1ee70e6568b4267d509ae |
# $HeadURL$
__RCSID__ = "$Id$"
"""
"""
from dirac import DIRAC
DIRAC.gLogger.initialize('test_gLogger','/testSectionDebug')
try:
for i in None:
pass
except:
pass
# for i in range(100):
# DIRAC.gLogger.info( "test %s" % i )
testList = [{ 'method' : DIRAC.gLogger.always,
'arguments' : ( ( ... | Sbalbp/DIRAC | FrameworkSystem/test/testLogger.py | Python | gpl-3.0 | 1,708 | [
"DIRAC"
] | 78cfc9e8589e6341320c61eb1105ce3afb941ee61edc70f770d81d341ab0a88d |
#!/usr/bin/python
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute... | jH0ward/psi4 | doc/sphinxman/document_psifiles.py | Python | lgpl-3.0 | 3,206 | [
"Psi4"
] | b700b41511483bd54e9e56d5ad4062a3008aa61eecd99bbf6cf653b8dd6e7975 |
"""
Physical units and dimensions.
The base class is Unit, where all here defined units (~200) inherit from.
The find_unit function can help you find units for a given quantity:
>>> import sympy.physics.units as u
>>> u.find_unit('coul')
['coulomb', 'coulombs']
>>> u.find_unit(u.charge)
['C', 'ch... | wxgeo/geophar | wxgeometrie/sympy/physics/units.py | Python | gpl-2.0 | 8,519 | [
"Avogadro"
] | feb613b2457ff3a939107997a321ac315eeb8770b81cd06fcc64f7489cd1a108 |
from __future__ import absolute_import, unicode_literals
from django.test import TestCase
from django.utils import six
from .models import (Building, Child, Device, Port, Item, Country, Connection,
ClientStatus, State, Client, SpecialClient, TUser, Person, Student,
Organizer, Class, Enrollment, Hen, Chick)
... | postrational/django | tests/select_related_regress/tests.py | Python | bsd-3-clause | 8,154 | [
"Brian"
] | 681349c79a28707de18e99f6b360398caed8e8abfa157dacb3b389b0d3de856f |
# coding: utf-8
from StringIO import StringIO
import unicodecsv
from grano.logic import Loader
from grano.logic.schemata import import_schema
# This source URL will be applied to all properties without their own lineage:
DEFAULT_SOURCE_URL = 'http://www.opennews.org/'
DATA = """fellow_name,twitter_handle,start_date... | granoproject/grano | grano/test/fixtures.py | Python | mit | 3,609 | [
"Brian"
] | de5fc4c52f4b53a0e66511e777089dc7f16692e53793626960876d5283f40880 |
import os
import sqlite3
from collections import OrderedDict
from numpy.random import random, seed
import numpy, json
from lsst.sims.utils import ObservationMetaData
from lsst.sims.catalogs.generation.db import CatalogDBObject
from lsst.sims.utils import raDecFromAltAz, calcObsDefaults, getRotTelPos, Site
__all__ = [... | SimonKrughoff/sims_catalogs_generation | python/lsst/sims/catalogs/generation/utils/testUtils.py | Python | gpl-3.0 | 21,807 | [
"Galaxy"
] | 243638073f8daf68fe522a960c097ec535af1c0b9dd93240e9740290f1680403 |
# avisynth - Python AviSynth wrapper
#
# Copyright 2013, 2016, 2019 the AvsPmod authors <https://github.com/avspmod/avspmod>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version ... | AvsPmod/AvsPmod | avisynth_cffi.py | Python | gpl-2.0 | 54,570 | [
"VisIt"
] | 6d93c7ab456cb1766b755fd6a45b24ccff015116fe3bcb2821c1dfba752b8d27 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/prop/nsr/uks.py | Python | apache-2.0 | 2,350 | [
"PySCF"
] | 4d1c0b1f270be29a2a2a541b58b28723ce533b0fbecacfd8afca72daa3a7a9a5 |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
"""
Go through `001_basic_usage.py` before running this example. We will re-use
the same computation: x*y and z+w for x in [1, 2, 3], y = 2, z = 4,
w in [5, 6] in an experiment called BasicUsage.
In example `004_adding_parameter_values.py`, we added a new parameter value.... | jm-begon/clustertools | examples/005_adding_parameters.py | Python | bsd-3-clause | 3,215 | [
"Gaussian"
] | 093f694ac748061ba810987dbaf70267111c71be3d47dbde058555a22022e65c |
import os
import numpy,scipy
import scipy.io
import pysces
from pysces.PyscesModelMap import ModelMap
from pylab import figure, close, show, ioff, figtext
from matplotlib.transforms import offset_copy
import cStringIO,string
from colorsys import hsv_to_rgb as htor
from matplotlib.figure import Figure as mplfig... | asttra/pysces | pysces/RateChar.py | Python | bsd-3-clause | 59,353 | [
"PySCeS"
] | 4259e3fc1dc5c9229af1c5e4fa9310af308d060b4cae516956c4b8c5291bcc4f |
#!/usr/bin/env python
import unittest
import gemmi
from common import full_path
class TestAlignment(unittest.TestCase):
def test_string_align(self):
result = gemmi.align_string_sequences(list('AABCC'),
list('ABC'), [True])
self.assertEqual(result.score... | project-gemmi/gemmi | tests/test_align.py | Python | mpl-2.0 | 3,231 | [
"Biopython"
] | 48ecef106374f53a5ec2d82148e575135ca2a439bd05db717dea8d8658cc1822 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2017, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Abstract based class for cclib methods."""
import logging
import sys
class MissingAttributeError(Exceptio... | cclib/cclib | cclib/method/calculationmethod.py | Python | bsd-3-clause | 2,242 | [
"ADF",
"cclib"
] | fc0828ba4760653128debd4592d84efc59b6969cb7663bb686769f93fe4d1690 |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | pombredanne/scancode-toolkit | tests/cluecode/test_authors.py | Python | apache-2.0 | 9,359 | [
"VisIt"
] | e02e19d958cff63876109da7b699e5cd58f4283e4b36e9983753d789bf1f02f8 |
#!/usr/bin/python
"""
Author: Brian Kellogg
Elsa API query
elsa_query.ini format:
[MAIN]
user = elsa
ip =
apikey =
"""
from __future__ import print_function
from yattag import Doc
import optparse
import time
import hashlib
from requests import Request, Session, packages
im... | theflakes/ELSA | elsa_query/elsa_query.py | Python | mit | 14,094 | [
"Brian"
] | e1cb16b6a88120ce585043bd18ea1bcb98a848d8a91129b20ea60b8c5433e817 |
""" Anomaly detection. """
import sys, shutil, csv, hashlib, plotly, json
from os.path import isdir, join as pJoin
from io import StringIO
import numpy as np
from numpy_financial import npv
import pandas as pd
from sklearn.neighbors import LocalOutlierFactor
from sklearn.ensemble import IsolationForest
import plotly.gr... | dpinney/omf | omf/models/anomalyDetector.py | Python | gpl-2.0 | 21,310 | [
"Gaussian"
] | bf9967e36aac16a81d7e9675ae7ff01f1684ddd57922efcfe07f4edb1620b671 |
from __future__ import division
import numpy as np
import copy
import inspect
import types as python_types
import marshal
import sys
import warnings
from keras import activations, initializations, regularizers, constraints
from keras import backend as K
from keras.engine import InputSpec, Layer
from ke... | bnsnapper/keras_bn_library | keras_extensions/rbm.py | Python | mit | 9,087 | [
"Gaussian"
] | 0be0edcd372f6483469b760ad27d377952370354ae1c2e70c4e3b159085e6d03 |
# -------------------------------------------------------------------------
# Name: Waterdemand modules
# Purpose:
#
# Author: PB, YS, MS, JdB
#
# Created: 15/07/2016
# Copyright: (c) PB 2016
# -------------------------------------------------------------------------
from cwatm.management_modules imp... | CWatM/CWatM | cwatm/hydrological_modules/water_demand/domestic.py | Python | gpl-3.0 | 4,744 | [
"NetCDF"
] | 266d6742eaa102117e89b899a9fc3802cd5ab9d89d2414f1de2d111882e53ecf |
"""
functions for SRVF curve manipulations
moduleauthor:: Derek Tucker <dtucker@stat.fsu.edu>
"""
from scipy.interpolate import InterpolatedUnivariateSpline, interp1d
from scipy.integrate import trapz, cumtrapz
from numpy import zeros, cumsum, linspace, gradient, sqrt, ascontiguousarray
from numpy import finfo, doub... | glemaitre/fdasrsf | fdasrsf/curve_functions.py | Python | gpl-3.0 | 19,964 | [
"Psi4"
] | 76e24b28c9a00ff824057ac60b2f7d584d7c4aa6b289a52965e0e25d9761fde6 |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2013 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | Glavin001/smucs | drive-sdk/sample.py | Python | mit | 3,387 | [
"VisIt"
] | 17c401f6c23bd886039cad0a1b93adfe47cb167369bdfda8c16cf4bf584a79b1 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | poem/cv_mim/action_recognition/train_with_encoder_base.py | Python | apache-2.0 | 9,780 | [
"Gaussian"
] | f88e9d8374d215bdd72608b3b28faeb56a69a0a50a5e2efff6cefa6469370549 |
"""Optimise the cache."""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
from zeroinstall import _, logger
import os, sys
def _already_linked(a, b):
"""@type a: str
@type b: str
@rtype: bool"""
ai = os.stat(a)
bi = os.... | rammstein/0install | zeroinstall/zerostore/optimise.py | Python | lgpl-2.1 | 3,712 | [
"VisIt"
] | 2d1e0f483dc500ce5b74c21a418f3d4a345f461955d5ca31b281f52e8667c077 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Tests for fragment.py"""
from __future__ import print_function
from __future__ import unicode_literals
from __future__ import division
import logging
from rdkit import Chem
from molvs.standardize import Standardizer
from molvs.fragment import FragmentRemover
logging... | mcs07/MolVS | tests/test_fragment.py | Python | mit | 5,029 | [
"RDKit"
] | ee3b9c3c4ea8f60e29fdf74df22a6820b046f6a6eb5232a7ea97033b4e67103d |
#############################################################################
# Copyright Kitware Inc.
#
# Licensed under the Apache License, Version 2.0 ( the "License" );
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licen... | DigitalSlideArchive/large_image | sources/mapnik/large_image_source_mapnik/__init__.py | Python | apache-2.0 | 19,598 | [
"NetCDF"
] | d1344551a66b44114dd064a829bcfb4782618f94d0d3389a5811d0b0ae97bc13 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# bugweed - a simple helper to locate simple error in the project code.
# Copyright (C) 2003-2015 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public... | heromod/migrid | mig/bugweed.py | Python | gpl-2.0 | 1,395 | [
"Brian"
] | 1113f3d998855c9a213783338fb0e749bb9b3efbdd06f42f31827ec77aed18ee |
#!/usr/bin/env python
__author__ = 'greg'
import math
import panoptesPythonAPI
import yaml
import psycopg2
import os
import sys
import cPickle as pickle
import getopt
import boto
from boto.s3.key import Key
import datetime
import json
import urllib2
# for Greg running on either office/home - which computer am I on?
if... | zooniverse/aggregation | Stargazing_2015/postgres_aggregation.py | Python | apache-2.0 | 37,388 | [
"Brian",
"Galaxy"
] | f415b268aa96f76324a476689d2cc30b280afebe484ff226e774f11732759d40 |
"""Make sure we get an exception when an atom is too close to the boundary."""
from ase import Atoms
from gpaw import GPAW
from gpaw.grid_descriptor import GridBoundsError
a = 4.0
x = 0.1
hydrogen = Atoms('H', [(x, x, x)],
cell=(a, a, a),
calculator=GPAW(maxiter=7))
try:
e1 = hydro... | robwarm/gpaw-symm | gpaw/test/pbc.py | Python | gpl-3.0 | 403 | [
"ASE",
"GPAW"
] | b96de2b2388b24859d5bc7402b607a722e584b5d64b8646b5134603ae8c4f907 |
#!/usr/bin/env python
## ----------------------------------------
## scikit-ribo
## ----------------------------------------
## a module for processing bam files
## ----------------------------------------
## author: Han Fang
## contact: hanfang.cshl@gmail.com
## website: hanfang.github.io
## date: 10/28/2016
## ---... | hanfang/scikit-ribo | scikit_ribo/bam_process.py | Python | gpl-2.0 | 13,906 | [
"pysam"
] | 4253702727829cd08efb97ad388c7829079bbc928de8363ad27c36344d74dc68 |
// This file is used to generate online documentation for ParaView protocols.
/**
* @class protocols.ParaViewWebProtocol
*
* Base protocol class on the server side for ParaViewWeb application.
*
* In order to call a protocol method from the client side you will need
* to use the call method on the session with t... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/Web/Documentation/api/pv_protocol.py | Python | gpl-3.0 | 33,883 | [
"ParaView",
"VTK"
] | 5821535f3da203e3995849feb0293c3104ba24f5c23424bb691752599a515a0c |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-today OpenERP SA (<http://www.openerp.com>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms o... | pedrobaeza/odoo | addons/project/project.py | Python | agpl-3.0 | 68,741 | [
"VisIt"
] | 7a07ecc7c6e578ed88f76fa2ac5bc10b4f0249ddc66fa24a2743ffe8ae9738ff |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright 2015-2016 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#... | Jokeren/neon | examples/mnist_branch.py | Python | apache-2.0 | 3,760 | [
"Gaussian"
] | 9e4718c8055204e6a87364780b6ee9841a897e1c5b654f6cadb083ae3e90134e |
##########################################################################
#
# This file is part of OCEMR.
#
# OCEMR is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License,... | ph1l/ocemr | ocemr/views/pregnancy.py | Python | gpl-3.0 | 7,217 | [
"VisIt"
] | d57de3c39455e9604b6c17d5616e6a85310cf886cc23f29df380afc408bb55ba |
#-*- coding:utf-8 -*-
#
# nngt_graph.py
#
# This file is part of the NNGT project to generate and analyze
# neuronal networks and their activity.
# Copyright (C) 2015-2019 Tanguy Fardet
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as pu... | Silmathoron/NNGT | nngt/core/nngt_graph.py | Python | gpl-3.0 | 32,443 | [
"NEURON"
] | 2503829cb87b021447781eccc30300638ce7ef69f1fd26d368a02d81a1b6abcd |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/action.py | Python | gpl-2.0 | 14,618 | [
"VisIt"
] | 68f479101ad9e908f46f3089be5d1b38c6ef471aaf37f8a1a296926925d39e1a |
# (C) British Crown Copyright 2013 - 2018, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | marqh/iris | lib/iris/tests/unit/fileformats/netcdf/test_Saver.py | Python | lgpl-3.0 | 33,786 | [
"NetCDF"
] | 2f27d87c04c34bcb24d0034cd3c2e2acb70ee21ddbb7f0ce632c38254aa84bf8 |
#!/usr/bin/env python
# This file is part of the Printrun suite.
#
# Printrun is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Prin... | ntoff/Printrun | printrun/pronsole.py | Python | gpl-3.0 | 70,149 | [
"Firefly"
] | f90cd378ebb6c34d11d9d3163266531b70ba735828ec4c0ce3ac01e4a9646cf1 |
# -*- coding: utf-8 -*-
"""
Write EC and SMC Meshes in legacy VTK format as .vtk.
"""
import os
import sys
# Run in current directory.
os.chdir(os.path.dirname(os.path.abspath(__file__)))
# Relative import path for the DumpMeshToLegacyFormat script.
importPath = os.path.abspath(os.path.join(os.path.dirname(__file__)... | BlueFern/DBiharMesher | meshes/c8064/Dump8064MeshLegacyFormat.py | Python | gpl-2.0 | 894 | [
"VTK"
] | 9a06a025e8e6d49b831630ca0fe9769a1e34d043a0229a7fb273453c876d23ec |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
Development script of the ChemEnv utility to get the optimized explicit permutations for coordination environments
identified with the separation plane alg... | Bismarrck/pymatgen | dev_scripts/chemenv/get_plane_permutations_optimized.py | Python | mit | 22,011 | [
"pymatgen"
] | 4e7b822e610fe0fb9c4b1d956ea7cd05da10b7318cfef8b66394d63b75ab9c2a |
"""
Copyright (C) 2017 RedNaga. http://rednaga.io
All rights reserved. Contact: rednaga@protonmail.com
This file is part of APKiD
Commercial License Usage
------------------------
Licensees holding valid commercial APKiD licenses may use this file
in accordance with the commercial license agreement provided... | davidblus/android_dynamic_detection | StaticAnalyzer/tools/apkid/apkid.py | Python | gpl-3.0 | 7,095 | [
"VisIt"
] | 74d9d94fa41f5a6329d946a55befa7c85de3c73706dc02e82c2c93be18cfa7db |
from __future__ import print_function, division, unicode_literals
import operator
from pymatgen.core.periodic_table import Element
from pymatgen.core.structure import Structure
from mpinterfaces.mat2d.intercalation.analysis import get_interstitial_sites
__author__ = "Michael Ashton"
__copyright__ = "Copyright 2017... | henniggroup/MPInterfaces | mpinterfaces/mat2d/intercalation/startup.py | Python | mit | 3,088 | [
"pymatgen"
] | 46d584e163fb67c338896978ba4121e6c1e3640cec732cc206c46f070b847ccd |
#!/usr/bin/env python
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl... | harterj/moose | scripts/git_news.py | Python | lgpl-2.1 | 982 | [
"MOOSE"
] | a0eb3fa9253b28e32725b9f471be87ab7d3b22856a284a4e6c867f0ec75be0f9 |
#
# Copyright Capita Translation and Interpreting 2013
#
# This file is part of Pipeline Creation Language (PCL).
#
# Pipeline Creation Language (PCL) is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either ve... | ianj-als/pcl | src/pclc/parser/entity.py | Python | gpl-3.0 | 1,242 | [
"VisIt"
] | 74ebd626763fb30315595d73c766a13eaef198d6629b494143ca683db83ac797 |
#!/usr/bin/env python
"""
Sentry
======
Sentry is a realtime event logging and aggregation platform. It specializes
in monitoring errors and extracting all the information needed to do a proper
post-mortem without any of the hassle of the standard user feedback loop.
Sentry is a Server
------------------
The Sentry ... | camilonova/sentry | setup.py | Python | bsd-3-clause | 5,114 | [
"GULP"
] | afcba398e8852daff1dddebc9013b220c189f260886d50ba5071ebce8c983462 |
# -*- coding: ISO-8859-15 -*-
# =============================================================================
# Copyright (c) 2004, 2006 Sean C. Gillies
# Copyright (c) 2007 STFC <http://www.stfc.ac.uk>
#
# Authors :
# Dominic Lowe <d.lowe@rl.ac.uk>
#
# Contact email: d.lowe@rl.ac.uk
# ========================... | ocefpaf/OWSLib | owslib/coverage/wcs100.py | Python | bsd-3-clause | 19,247 | [
"NetCDF"
] | 15ee1471e936920290f9c2b290e998c996b2648417445dfe215b18243c253289 |
# BOM_SOLAR_ASCII_TO_NETCDF.PY
#
# The input proprietary format supported by this example is a Bureau of
# Meteorology (BoM) ArcView ASCII grid file. The format contains a header
# (defines the shape and size of the grid), space-separated ASCII data, and
# tail metadata that contains internal BoM processing informatio... | KimberleyOpie/common-tools | raw_data_tools/bom_solar_ascii_to_netcdf_day_blank.py | Python | apache-2.0 | 10,019 | [
"NetCDF"
] | 0758789e5f0c7f94f59ee2a1b6c4a46e3021577f9db323278f8b9b2e9c018307 |
"""
Module containing functions interacting with the CS and useful for the RSS
modules.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = '$Id$'
from DIRAC import gConfig, gLogger, S_OK
from DIRAC.Core.Utilities.SiteSEMapping import getSEPar... | yujikato/DIRAC | src/DIRAC/ResourceStatusSystem/Utilities/CSHelpers.py | Python | gpl-3.0 | 4,257 | [
"DIRAC"
] | 831283738bc44810d05e38d285d030fcb177429ab2a89ee71659d7f8d46e45b2 |
# coding: utf-8
from __future__ import unicode_literals
import unittest
import os
from pymatgen.analysis.pourbaix.entry import PourbaixEntry, IonEntry, MultiEntry
from pymatgen.analysis.pourbaix.entry import PourbaixEntryIO
from pymatgen.phasediagram.entries import PDEntry
from pymatgen.core.ion import Ion
from pym... | Dioptas/pymatgen | pymatgen/analysis/pourbaix/tests/test_entry.py | Python | mit | 5,935 | [
"pymatgen"
] | 877b0f6f79f504dad5b0ce1d8b1dd9210e30c7670056f02d8ee22e2ff55e2a8a |
# Copyright 2020, The TensorFlow Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | tensorflow/privacy | tensorflow_privacy/privacy/optimizers/dp_optimizer.py | Python | apache-2.0 | 15,920 | [
"Gaussian"
] | 393613516d1a56b28aa7f57bfeece70616fef9e0f916cb8da970f034c656321d |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006-2007 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | tiagocardosos/stoq | stoqlib/gui/dialogs/supplierdetails.py | Python | gpl-2.0 | 7,112 | [
"VisIt"
] | 108dc49b7b9fa1e1a92c6c23dc32aa9fb5ed31f55c3b0893d603c9bca05b55b4 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import re
from pymatgen.core.structure import Molecule
from monty.io import zopen
"""
Module implementing an XYZ file object class.
"""
__author__ = "Shyue P... | nisse3000/pymatgen | pymatgen/io/xyz.py | Python | mit | 4,202 | [
"pymatgen"
] | 6e4b9c06afd9ec1ec90dae799651e144387a86d0403e10069d2511a7566d1c11 |
###############################################################################
# ilastik: interactive learning and segmentation toolkit
#
# Copyright (C) 2011-2014, the ilastik developers
# <team@ilastik.org>
#
# This program is free software; you can redistribute it and/or
# mod... | nielsbuwen/ilastik | ilastik/workflows/carving/carvingGui.py | Python | gpl-3.0 | 34,880 | [
"VTK"
] | 5c6840d334980cd788e7ad03ef58fcf7a6f36c25ebc01b28282335e89766bf27 |
# -*- Mode:Python; indent-tabs-mode:nil; tab-width:4 -*-
#
# Copyright (C) 2019-2020 Canonical Ltd
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 3 as
# published by the Free Software Foundation.
#
# This program is distributed in ... | chipaca/snapcraft | tests/unit/plugins/v1/test_colcon.py | Python | gpl-3.0 | 48,002 | [
"CRYSTAL"
] | 69dbd3ba79209e40e0d2d726755c1bac72e5867159621ee0f02e084313d76336 |
#!/usr/bin/env python
#
# -----------------------------------------------------------------------------
# Copyright (c) 2018 The Regents of the University of California
#
# This file is part of kevlar (http://github.com/dib-lab/kevlar) and is
# licensed under the MIT license: see LICENSE.
# ----------------------------... | dib-lab/kevlar | kevlar/localize.py | Python | mit | 9,523 | [
"BWA",
"pysam"
] | fd5513fdb36da403f30158c349671921ff9d49621959e854991159e2f31a5506 |
# -*- coding: utf-8 -*-
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'PresentMedicalHistory.others'
db.add_column(u'patient_presentmedicalhistory', 'others',
... | aazhbd/medical_info01 | patient/migrations/0013_auto__add_field_presentmedicalhistory_others__add_field_pastmedicalhis.py | Python | bsd-3-clause | 30,322 | [
"VisIt"
] | 02b6cfb3a5b27a3db676087939635636a6bab79e95d4b88bdbfafd9dfb6c9181 |
# pylint: disable=invalid-name, too-many-arguments
from datetime import timedelta
import transaction
def test_on_post_page_user_sees_all_info(
browser, site, navigator, fakefactory, dbsession):
with transaction.manager:
fakefactory.PostFactory.create_batch(4)
post = fakefactory.PostFactor... | enkidulan/enkiblog | src/enkiblog/tests/functional/test_post_ui.py | Python | apache-2.0 | 2,722 | [
"VisIt"
] | d194b024b6c648b03d1bfa9f164d451e716e5de2968669e426c8f2e33f8af7a4 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2009 Brian G. Matherly
# Copyright (C) 2013 John Ralls
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General P... | ennoborg/gramps | gramps/gen/utils/grampslocale.py | Python | gpl-2.0 | 48,512 | [
"Brian"
] | 900751e893f1ac3a9dcbedd9c1e0e6e965694805ae19e71a5e258caa8c2752e9 |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
# CREATED:2015-02-14 22:51:01 by Brian McFee <brian.mcfee@nyu.edu>
'''Unit tests for display module'''
# Disable cache
import os
try:
os.environ.pop('LIBROSA_CACHE_DIR')
except KeyError:
pass
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as p... | decebel/librosa | tests/test_display.py | Python | isc | 9,431 | [
"Brian"
] | 55e53bba330ff5468d7fb83a2450e540fde54a7502fd850612d60192ce6f3421 |
import os
import galsim
import h5py
import lsstetc
from argparse import ArgumentParser
parser = ArgumentParser()
parser.add_argument('h5read', type=str,
help="Fastcat hdf5 input file.")
parser.add_argument('--nx', default=24, type=int,
help="Postage stamp size in pixels (default... | DarkEnergyScienceCollaboration/BremertonRoundTrip | galsim/postageStamp.py | Python | mit | 1,952 | [
"Gaussian"
] | de489a2cf25dfabcf5b649a41989e3e0e444fba5be6418480455cba093df2b9f |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | rmcgibbo/psi4public | psi4/driver/procrouting/empirical_dispersion.py | Python | lgpl-3.0 | 9,420 | [
"Psi4"
] | 6b5cc878cbae7386b4930d17e8db942b385a9d5d0a3412b1950f941fcb732206 |
import numpy as np
from PyQt5.QtWidgets import QMainWindow
from py_particle_processor_qt.gui.generate_main import Ui_Generate_Main
from py_particle_processor_qt.gui.generate_error import Ui_Generate_Error
from py_particle_processor_qt.gui.generate_envelope import Ui_Generate_Envelope
from py_particle_processor_qt.gui.g... | DanielWinklehner/py_particle_processor | py_particle_processor_qt/generator.py | Python | mit | 30,244 | [
"Gaussian"
] | 9c41b1d1d27003e4213e4d1df4b61d1aa4a845df65329680cd82f24eb82b440d |
#!/usr/bin/env python
try:
__IPYTHON__
import sys
del sys.argv[1:]
except:
pass
import srwl_bl
import srwlib
import srwlpy
def set_optics(v=None):
el = []
el.append(srwlib.SRWLOptA("r", "a", 0.0002, 0.001, 0.0, 0.0))
el.append(srwlib.SRWLOptD(6.9))
ifnMirror1 = "mirror_1d.dat"
if... | mkeilman/sirepo | tests/template/srw_import_data/exported_chx.py | Python | apache-2.0 | 19,112 | [
"Gaussian"
] | f7ce70be537c34d7a7597d8b834e9bf7746cc836fbf6d9bcf8baf935911836c2 |
import openvoronoi as ovd
import ovdvtk
import time
import vtk
import datetime
import math
import random
import os
def drawLine(myscreen, p1, p2):
myscreen.addActor(ovdvtk.Line(p1=(p1.x, p1.y, 0), p2=(p2.x, p2.y, 0), color=ovdvtk.yellow))
def writeFrame(w2if, lwr, n):
w2if.Modified()
current_dir = os.ge... | aewallin/openvoronoi | python_examples/point_animation.py | Python | lgpl-2.1 | 3,469 | [
"VTK"
] | b7b3e755055e85e8511c58aa6f94b7fd04dd059bb0523e1f3f23d7e756c16971 |
# -*- coding: utf-8 -*-
"""
Created on Sun Oct 28 18:14:36 2012
@author: martin
"""
from trend_surface_model import fit_tsm
from wrf_model_data import WRFModelData
from grid_moisture_model import GridMoistureModel
from observation_stations import MesoWestStation
from diagnostics import init_diagnostics, diagnostics
f... | vejmelkam/fmda | src/fmda.py | Python | mit | 21,935 | [
"NetCDF"
] | ac65c02d378a04fe116da0d559e4ba1a9c93746a2751a28f29c8641df2014ad2 |
#Copyright ReportLab Europe Ltd. 2000-2017
#see license.txt for license details
#history https://hg.reportlab.com/hg-public/reportlab/log/tip/src/reportlab/pdfbase/cidfonts.py
#$Header $
__version__='3.3.0'
__doc__="""CID (Asian multi-byte) font support.
This defines classes to represent CID fonts. They know how to c... | piMoll/SEILAPLAN | lib/reportlab/pdfbase/cidfonts.py | Python | gpl-2.0 | 18,838 | [
"Brian"
] | 7aaf590e7d3a817781b46dd55414458555bce8c6bb2f2a49c25fe37a8d11a8d0 |
#!/usr/bin/env python3
""" _ _
_ __ ___ _ _ _ __ __ _| | ___ _ __ | |__ __ _ _ __ ___ ___
| '_ \ / _ \ | | | '__/ _` | | / _ \ '_ \| '_ \ / _` | '_ \ / __/ _ \
| | | | __/ |_| | | | (_| | | | __/ | | | | | | (_| | | | | (_| __/
|_| |_|\___|\__,_|_| \__,_|_| \__... | Hirico/supic | pycalc/enhance.py | Python | mit | 32,360 | [
"Gaussian"
] | 92ae5fdeb8523c9cedcacfc64e5f35f7fc9b5d7c59a20b4e50137ec6eb8e3515 |
#!/bin/python
'''
Author: Paul Szypryt Date: January 18, 2013
Uses X and Y sweep observation files to fit Gaussians to observed resonances. Uses this data to map each
resonant frequency to and x and y position on the MKID array.
'''
import numpy as np
from tables import *
import os
import time
import matplotli... | bmazin/ARCONS-pipeline | beammap/BeamMap.py | Python | gpl-2.0 | 45,489 | [
"Gaussian"
] | ebc00b66c5693a80498c842f741662038883c3f58fc02e7c8dc53d9c514573fc |
#!/usr/bin/python
# -*- encoding: utf-8; py-indent-offset: 4 -*-
# +------------------------------------------------------------------+
# | ____ _ _ __ __ _ __ |
# | / ___| |__ ___ ___| | __ | \/ | |/ / |
# | | | | '_ \ / _ \/ __| |/ /... | sileht/check_mk | web/htdocs/login.py | Python | gpl-2.0 | 11,732 | [
"VisIt"
] | bf7d93b7f6c442ddf9fc8eedb3d8d9d1fdb39d6e30d79b242ca39ad294680abb |
#!/usr/bin/env python3
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path
here = path.abspath(path.dirname(__file__))
# Get the long description from the README file
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
long_descripti... | sein-tao/pyBioUtil | setup.py | Python | gpl-2.0 | 2,249 | [
"pysam"
] | 5906bd051337efeff38606c83771141634219710fa41827a1fb18d77295a9684 |
"""
Wifi scan test from
http://kbcarte.wordpress.com/2011/09/01/android-ase-wifi-scan-with-ui/
"""
#imports and get an object of android
import android, time
droid = android.Android()
#scan the wifi and assign vars to hold the results
#this is dirty, making sure WiFi is on, and
#toggling on if not would be better; AP... | mre/hub | test1.py | Python | bsd-3-clause | 1,490 | [
"ASE"
] | e32bbcca8bfb7e6b83985eaf44db5bfa030b4daeac51afa5ce36dc29a1df925d |
#!/usr/bin/python -tt
import sys, re, math
from decimal import *
# TODO: work on naming scheme
# TODO: add more ORIs
# TODO: assemblytree alignment
# TODO: Wobble, SOEing
# TODO: (digestion, ligation) redundant products
# TODO: for PCR and Sequencing, renormalize based on LCS
# TODO: tutorials
dna_alphabet = {'A':'A... | nemami/synbioinformatica | synbioinformatica.py | Python | bsd-2-clause | 119,428 | [
"Biopython"
] | e6afdd218988d89891aaf00b354851fa97f1c8ec76db32d745e4676aee8f4601 |
# Stuff related to the library
LIBRARY_URL = "https://github.com/GetRektByMe/Listen"
# Unrelated to anything we can use
BASE_URL = "https://listen.moe/api/"
AUTH_URL = BASE_URL + "authenticate"
# Account endpoints
USER = BASE_URL + "user"
USER_FAVOURITES = BASE_URL + "user/favorites"
# Song endpoints
SONG_FAVOURITE... | GetRektByMe/Listen | listen/constants.py | Python | mit | 446 | [
"MOE"
] | fba9bb46eb60d501e53ea031713787e648161b105f7b55d9c45d768024fb6927 |
""" SiteStatus helper
Provides methods to easily interact with the RSS
"""
import errno
from datetime import datetime, timedelta
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Core.Utilities.DIRACSingleton import DIRACSingleton
from DIRAC.Co... | hgiemza/DIRAC | ResourceStatusSystem/Client/SiteStatus.py | Python | gpl-3.0 | 11,595 | [
"DIRAC"
] | 9377af2fb55479235612a08849361894184474002dfd0c6905da3bb93189af69 |
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