text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
"""\
PyQuante: Python Quantum Chemistry
PyQuante is a toolkit for building quantum chemistry programs in the
Python programming language.
Modules:
CGBF Class/functions for manipulating contracted Gaussian bfns
PGBF Class/functions for manipulating primitive Gaussian bfns
hartree_fock Functions fo... | berquist/PyQuante | PyQuante/__init__.py | Python | bsd-3-clause | 1,554 | [
"Gaussian"
] | 2775cb63152316efc0abc266dd60734cce11d1331930f642cb2289b081b441d2 |
r"""
===============
Decoding (MVPA)
===============
.. contents:: Contents
:local:
:depth: 3
.. include:: ../../git_links.inc
Design philosophy
=================
Decoding (a.k.a. MVPA) in MNE largely follows the machine
learning API of the scikit-learn package.
Each estimator implements ``fit``, ``transform``... | mne-tools/mne-tools.github.io | 0.18/_downloads/e9da0c1f80863ce55775f8c349b7ce39/plot_sensors_decoding.py | Python | bsd-3-clause | 18,083 | [
"VisIt"
] | 7b7498e82113776a9c9aa2f3558ff3977136ad91853eb818fe22f49fd5e79ed7 |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
To avoid recomputing AO to MO integral transformation, integrals for CCSD,
CCSD(T), CCSD lambda equation etc can be reused.
'''
from pyscf import gto, scf, cc
mol = gto.M(verbose = 4,
atom = 'H 0 0 0; F 0 0 1.1',
basis = 'ccpvdz')
mf ... | gkc1000/pyscf | examples/cc/12-reuse_integrals.py | Python | apache-2.0 | 893 | [
"PySCF"
] | 9a258e8af2eac32ed83a2c2706ee32a27b94e99a71092d0f17af08cc22545205 |
# -*- coding: utf-8 -*-
u"""simulation data operations
:copyright: Copyright (c) 2019 RadiaSoft LLC. All Rights Reserved.
:license: http://www.apache.org/licenses/LICENSE-2.0.html
"""
from __future__ import absolute_import, division, print_function
from pykern import pkconfig
from pykern import pkio
from pykern.pkcol... | mkeilman/sirepo | sirepo/sim_data/srw.py | Python | apache-2.0 | 23,092 | [
"CRYSTAL",
"Gaussian"
] | b72d6e2a98b652ad1b13b988ea990cdbd7ea2c1ebd3067819a9b99d67aba4fc6 |
from numpy import array, matrix,log
from math import exp
from numpy import identity
from numpy import zeros
from .__gaussian_custom import norm_pdf_multivariate
class density:
"""This is a kernel density estimation framework, but not the complete algorithm.
The user will have to run a clustering method first t... | sbxzy/pygks | pygks/kde.py | Python | bsd-3-clause | 2,602 | [
"Gaussian"
] | 3afb5ab7d15f84ce1fa8a467b080426ed89935c2f21e214b9a7ee96c73453662 |
# -*- coding: utf-8 -*-
"""Tests for the repository class."""
import os
import tempfile
from pybel import to_bel_script, to_nodelink_file, to_pickle
from pybel.examples import egf_graph
from pybel.repository import BELRepository
from pybel.testing.cases import TemporaryCacheMixin
class TestRepository(TemporaryCach... | pybel/pybel | tests/test_bel_repository.py | Python | mit | 2,024 | [
"Pybel"
] | 5fd94ecaf7b28147272f8b2d227ed4762b3989c166485e7f4a539b8d4f256d3e |
import numpy as np
import tensorflow as tf
import elbow.util as util
from elbow import ConditionalDistribution
import scipy.stats
from elbow.gaussian_messages import MVGaussianMeanCov, reverse_message, forward_message
from elbow.parameterization import unconstrained, psd_matrix, psd_diagonal
class LinearGaussian(C... | davmre/bayesflow | elbow/models/time_series.py | Python | bsd-3-clause | 12,076 | [
"Gaussian"
] | 47469e1b346a9b29f4d042d73f46c9068359cb345ba8cfa1b6262f34bdc70ef8 |
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: BSD (3-clause)
import os
... | jaeilepp/mne-python | mne/channels/channels.py | Python | bsd-3-clause | 47,704 | [
"Mayavi"
] | ae84ffb7767175b4fa5d4c1f6a29cbdad3fece218b2692ff4375e9e852242d3e |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | python/peacock/Input/JsonData.py | Python | lgpl-2.1 | 2,871 | [
"MOOSE"
] | bca1d4fec3cb25aae2d7af0f7f14107142bdd1f894b10a6b2cc3d87a81ca67ba |
'''subclassing kde
Author: josef pktd
'''
import numpy as np
from numpy.testing import assert_almost_equal, assert_
import scipy
from scipy import stats
import matplotlib.pylab as plt
class gaussian_kde_set_covariance(stats.gaussian_kde):
'''
from Anne Archibald in mailinglist:
http://www.nabble.com/Wid... | statsmodels/statsmodels | statsmodels/sandbox/nonparametric/kdecovclass.py | Python | bsd-3-clause | 5,669 | [
"Gaussian"
] | e30c6081b3b3219c39809dd0cc850377448de680e4967a0c9f92e4678d9a5409 |
# coding: utf8
{
' Quotas: %(quotas)s x%(quota_amount).2f': ' Quotas: %(quotas)s x%(quota_amount).2f',
' Transaction number: %s': ' Transaction number: %s',
'"update" is an optional expression like "field1=\'newvalue\'". You cannot update or delete the results of a JOIN': '"update" is an optional expression like "field... | reingart/gestionlibre | languages/fr-ca.py | Python | agpl-3.0 | 16,572 | [
"VisIt"
] | 0f4f8dcecf465e04190254e18a01c4ea21e4a37e315cf272b0d477606b7bda9c |
"""
+ + + + + + + HEADER + + + + + + + + +
file_name lc_remaped_position_L3_.hdf5
HDF5_Version 1.8.18
h5py_version 2.7.1
+ + + + + + + DATA + + + + + + + + + +
========================================
agn_properties <HDF5 group "/agn_properties" (2 members)>
- - - - - - - - - - - - - - - - - - - -
agn_activity <H... | JohanComparat/pyEmerge | bin_cluster/fits_add_templates.py | Python | unlicense | 17,110 | [
"Galaxy"
] | 7db8279937aacd445e4b6d648f939c081317b465a55731e69232696e67cd8cdb |
# -*- coding: utf-8 -*-
# Copyright 2007-2011 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | sillvan/hyperspy | hyperspy/io_plugins/netcdf.py | Python | gpl-3.0 | 6,589 | [
"NetCDF"
] | 32d2e45f4234ea78f2d206d816be6bfa87db971127d4bb1a809482e089e91cbb |
from datetime import datetime
from django.contrib.auth.models import User
from django.db import models
from django.utils.translation import ugettext_lazy as _
from djblets.util.db import ConcurrencyManager
from djblets.util.fields import CounterField
from reviewboard.reviews.models import Group, ReviewRequest
from r... | chazy/reviewboard | reviewboard/accounts/models.py | Python | mit | 9,071 | [
"VisIt"
] | 1f42d46cab24be9e17744396728fd3409058cf4ea752d16687fc05d820988ad2 |
"""
A program demonstrate how opposite neural networks work.
Visit http://evtushenko.turris-eburnea.ru/opp_ann_2014.html
for more details.
"""
__author__ = 'Evtushenko Georgy'
from metanet.networks.artificial_networks.opposed_network import OpposedNetwork
from metanet.datasets.xor import get_xor
if __nam... | senior-zero/metanet | examples/opposed.py | Python | gpl-3.0 | 560 | [
"VisIt"
] | 1694b9d31c0d89420176d49c92d77f042a5fe61916723c63d8e716a86bc5bb7f |
#!/usr/bin/env python
#############################################################################
##
## Copyright (C) 2012 Digia Plc and/or its subsidiary(-ies).
## Contact: http://www.qt-project.org/legal
##
## This file is part of the test suite of the Qt Toolkit.
##
## $QT_BEGIN_LICENSE:LGPL$
## Commercial License... | RLovelett/qt | doc/src/diagrams/contentspropagation/standardwidgets.py | Python | lgpl-2.1 | 7,315 | [
"ASE"
] | 6d0942bba8a45b6b53d5283196dee62ec7c68ce1616c678b4025fd00202568eb |
# coding=utf-8
# Copyright 2020 The TF-Agents Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable la... | tensorflow/agents | tf_agents/environments/examples/tic_tac_toe_environment.py | Python | apache-2.0 | 5,319 | [
"VisIt"
] | 5a1f02291d9fdcb1dd99d4310b137f97e356e479b7d2efec9e6ee472c6eb10f0 |
# coding: utf-8
"""Standard test images.
For more images, see
- http://sipi.usc.edu/database/database.php
"""
import os as _os
import numpy as _np
from ..io import imread, use_plugin
from .._shared._warnings import expected_warnings, warn
from ..util.dtype import img_as_bool
from ._binary_blobs import binary_bl... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/skimage/data/__init__.py | Python | gpl-3.0 | 11,893 | [
"ESPResSo"
] | 4b67dd93ffd658ac5f135a4077e1f393ed7d22dcd0ede3fc72910511ba381309 |
import copy
import subprocess as sub
from pos_parameters import string_parameter, value_parameter, filename_parameter, \
ants_transformation_parameter, vector_parameter, list_parameter, \
switch_parameter, ants_regularization_parameter, boolean_parameter
import pos_parameters
class ge... | pmajka/poSSum | possum/pos_wrappers.py | Python | mit | 81,697 | [
"Gaussian"
] | db289d08b1c5766fb4fc20bef8889cf36dfc537ad4461129bfc3604c9df149cc |
# Copyright: Damien Elmes <anki@ichi2.net>
# -*- coding: utf-8 -*-
# License: GNU GPL, version 3 or later; http://www.gnu.org/copyleft/gpl.html
from PyQt4.QtGui import *
import ankiqt.forms
from ankiqt import appVersion
def show(parent):
dialog = QDialog(parent)
abt = ankiqt.forms.about.Ui_About()
abt.set... | richtermondt/ankiqt | ankiqt/ui/about.py | Python | gpl-3.0 | 1,788 | [
"VisIt"
] | 896d4850188f8536f5d765f92d3ea3780e602ca04d84ace692af6b9e80f11d28 |
#!/usr/bin/env python
# vim:fileencoding=UTF-8:ts=4:sw=4:sta:et:sts=4:ai
from __future__ import with_statement
__license__ = 'GPL v3'
__copyright__ = '2009, Kovid Goyal <kovid@kovidgoyal.net>'
__docformat__ = 'restructuredtext en'
import sys, os, shutil, plistlib, subprocess, glob, zipfile, tempfile, \
py_compi... | Eksmo/calibre | setup/installer/osx/app/main.py | Python | gpl-3.0 | 23,816 | [
"VisIt"
] | 73887a25b1afae2ca7c2ee1a75dc608e5d831cb52b37a122c0016592e4712396 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
# ... | SKIRT/PTS | magic/config/find_other.py | Python | agpl-3.0 | 4,933 | [
"Gaussian"
] | 7366ef7e18330bb998fadbb931d58da25fd7fbc98eebf6c29337558532536972 |
# -*- coding: utf-8 -*-
"""
Created on Fri Sep 30 15:20:45 2011
@author: josef
"""
import numpy as np
from scipy import stats
from statsmodels.sandbox.tools.mctools import StatTestMC
from statsmodels.sandbox.stats.diagnostic import (
acorr_ljungbox, unitroot_adf)
def normalnoisesim(nobs=500, loc=0... | bavardage/statsmodels | statsmodels/sandbox/tools/try_mctools.py | Python | bsd-3-clause | 1,890 | [
"ADF"
] | e1d9a084d201e73b2a5aa51bfc22d0db10ff5e8926e60245205155289019dd57 |
#!/usr/bin/python2.4
# -*- coding: utf-8 -*-
#
# Copyright (C) 2010 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | germs-lab/RefSoil | script_google_api/google-api/google-soil-strain.py | Python | gpl-2.0 | 2,009 | [
"VisIt"
] | 181e3cc7a89aeb5a0f68a55f04297af14536dbb09dcae3b2405ce9e18b13637d |
#!/usr/bin/env python
"""
This script generates API changes between two different versions of VTK.
The script uses git and ctags to preset a list of classes added/removed, public
methods added/removed when going from one version to the other.
"""
# ctags generated by the command:
# ctags -R --sort=yes --c++-kinds=cf --... | candy7393/VTK | Utilities/Maintenance/semanticDiffVersion.py | Python | bsd-3-clause | 20,609 | [
"VTK"
] | e405d242f27b70946ae2e3b91eadf45ccb403ff4959204a2ee479e7604faf31a |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.2
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | bearstech/ansible | lib/ansible/modules/network/avi/avi_controllerproperties.py | Python | gpl-3.0 | 13,790 | [
"VisIt"
] | e27e45785b57eb7d85f6833550e21fa4d11d2db6d088af6542e3bf5507269dbb |
#!/usr/bin/env python
from __future__ import division
from __future__ import absolute_import
from __future__ import print_function
# -*- coding:UTF-8 -*-
__author__ = 'Zhengtao Xiao'
import HTSeq
import pysam
import sys
def readGTF(gtfFile,stranded):
gtf = HTSeq.GFF_Reader(gtfFile)
start_codon_sites = {}
stop_cod... | xzt41/RiboCode | RiboCode/RPF_count_ORF.py | Python | mit | 4,586 | [
"HTSeq",
"pysam"
] | 1e4e0bf639369086e27687c473a086e01caa0274a1034f4f52af02e2729845c1 |
#fq2sam.py: Align fastq read pairs to reference genome.
#created by: Jeffrey A. Detras
#!/usr/bin/python
import sys, getopt, re, os, subprocess
def main(argv):
#define variables
bwa_threads = ''
reference = ''
read_pair1 = ''
output_dir = ''
#get arguments
try:
opts, args = get... | IRRI-Bioinformatics/variant-calling-pipeline | fq2sam.py | Python | cc0-1.0 | 2,197 | [
"BWA"
] | 61d0bc6741b9c20febbb1210fafe4352ce694f8f70125d6f0e503cdd3fa172d2 |
# -*- coding: utf-8 -*-
"""
Generators for random graphs.
"""
# Copyright (C) 2004-2009 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
__author__ = """Aric Hagberg (hagberg@lanl.gov)\nPieter Swart (swart@l... | JaneliaSciComp/Neuroptikon | Source/lib/CrossPlatform/networkx/generators/random_graphs.py | Python | bsd-3-clause | 30,902 | [
"VisIt"
] | f3eef810b071198f7e206fcdfc10b83e89d6aec288e46a1a253af8a9082c4c9a |
import torch
import os
import sys
import itertools
import threading
from concurrent.futures import ThreadPoolExecutor
from src.python.preprocess2 import *
from blast import *
from tempfile import gettempdir
tmp_dir = gettempdir()
out_dir = "./Data"
from scipy.stats import *
import pickle
NUM_CPU = 8
eps = 10... | yotamfr/prot2vec | src/python/dingo_utils2.py | Python | mit | 12,632 | [
"BLAST"
] | 12ccbb5bba29230fea0dcf4d51f9266bb7af4a88c7b7e4de8b9648472e6c5f83 |
# Copyright 2008-2015 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | snyderr/robotframework | src/robot/model/itemlist.py | Python | apache-2.0 | 2,989 | [
"VisIt"
] | 16e6bbfee2b6098a3e2b218d4c2c9c1113570fd4ca09aafa9abc02a4b6705954 |
"""The Mayavi UI plugin
"""
# Author: Prabhu Ramachandran <prabhu [at] aero . iitb . ac . in>
# Copyright (c) 2008, Enthought, Inc.
# License: BSD Style.
# Standard library imports.
import logging
# Enthought library imports.
from traits.api import List, on_trait_change
from envisage.api import Plugin
from pyface.wor... | liulion/mayavi | mayavi/plugins/mayavi_ui_plugin.py | Python | bsd-3-clause | 7,921 | [
"Mayavi"
] | 6bc675b0424682e8bb7a2cfca53f264d507b9581fe5a8a33ebb08fd713bd232d |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding: utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# Convolve MTSS rotamers with MD trajectory.
# Copyright (c) 2011-2017 Philip Fowler and AUTHORS
# Published under the GNU Public Licence, version 2 (or higher)
#
# Includ... | MDAnalysis/RotamerConvolveMD | rotcon/__init__.py | Python | gpl-2.0 | 7,468 | [
"MDAnalysis"
] | ad5131d39ba7f0956e933bbd54e2e94c33873cca79ac7106f7fdfc3137d07653 |
import cv2
from matplotlib import pyplot as plt
img_file_path = "./img/Lenna.png"
#open image
img = cv2.imread(img_file_path)
img = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY) # para converter para GRAY <<<<<<<<<<<<<<<<<<
## 1) blur (uniform)
img_blur = cv2.blur(img, (3,3))
# fig, subs = plt.subplots(1,2)
## plt.gray(... | daniellima/cifar-10-image-recognition | src/examples/6-filters.py | Python | mit | 1,514 | [
"Gaussian"
] | 7e9f209150f177d245f47dc647efd58bcde633cdd93425890586378c011e3cec |
""" Codes for Scattering by ISM
Based on formalism derived by Macquart & Koay 2013, ApJ, 776, 125
Modified by Prochaska & Neeleman 2017
"""
from __future__ import print_function, absolute_import, division, unicode_literals
import numpy as np
from scipy.special import gamma
from astropy import constants
from astr... | FRBs/FRB | frb/turb_scattering.py | Python | bsd-3-clause | 13,395 | [
"Galaxy"
] | c2a04f37e40126323d2d5a30edfb0fb84ad2182c84956250df5a5192c0e4fd7a |
'''
SparsePak Correction Tools (SPaCT)
Author: Zach Pace (U Wisc-Madison)
License: GNU GPLv2
Some tools for correcting un-flux-calibrated SparsePak data when there's
no standard star.
Performance not guaranteed. Success dependent on correct redshift,
correct centering of SparsePak & SDSS.
Changelog:
Version ... | zpace/SparsePak-SFH | SPaCT.py | Python | mit | 72,772 | [
"Galaxy",
"Gaussian"
] | 2211d808a657eeb08bef8ab08e1467a1a71b0a33bba11d4dd3c5a9cc0234ad62 |
from django.views.generic import View
from django.http import HttpResponse
from django.conf import settings
from django.core.exceptions import ObjectDoesNotExist
from influencetx.core import constants
import logging
log = logging.getLogger(__name__)
class FrontendAppView(View):
"""
Serves the compiled frontend... | open-austin/influence-texas | src/config/views.py | Python | gpl-2.0 | 990 | [
"VisIt"
] | 7ef2ad88d7fe2747f1d3e1c9613587ec9b29507dc0027f748d56c5cc8cbf1d1b |
# coding=utf-8
"""Tests for the flood forecasting functions."""
import unittest
import numpy
import os
import sys
# We can't install scipy on OSX easily so disable import check
#pylint: disable=F0401
from realtime.netcdf_utilities import convert_netcdf2tif
from safe.storage.core import read_layer
from safe.storage.ve... | opengeogroep/inasafe | realtime/test/test_flood_forecasting.py | Python | gpl-3.0 | 6,060 | [
"NetCDF"
] | 48fbcd8754dde5331a2fd133ac050235ef27015fa497e1dea3a0fc73519eab74 |
# Orca
#
# Copyright 2005-2008 Google Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library i... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/espeechfactory.py | Python | gpl-3.0 | 15,796 | [
"ORCA"
] | 36d36793338a6106a5101a49cc701cef263880557607ebdce6f677fa382b4df4 |
"""
Test wait until next page loads.
"""
from bok_choy.web_app_test import WebAppTest
from bok_choy.promise import BrokenPromise
from .pages import ButtonPage, NextPage
class NextPageTest(WebAppTest):
"""
Test wait for next page to load.
"""
def setUp(self):
super().setUp()
self.next... | edx/bok-choy | tests/test_next_page.py | Python | apache-2.0 | 822 | [
"VisIt"
] | 7ba95234ac3709f8aad1a17837f22b5b1570b0ea2bb5de2ce1bf93598cf43e09 |
# Copyright 2008 Brian Boyer, Ryan Mark, Angela Nitzke, Joshua Pollock,
# Stuart Tiffen, Kayla Webley and the Medill School of Journalism, Northwestern
# University.
#
# This file is part of Crunchberry Pie.
#
# Crunchberry Pie is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gene... | brianboyer/newsmixer | pie/questions/tests.py | Python | gpl-3.0 | 3,210 | [
"Brian",
"exciting"
] | 1582d0dfeed3d2b892461e15c1cd1bf3c9096165c6eeea2be53438175fbc4521 |
"""
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | mehdidc/scikit-learn | sklearn/tree/tree.py | Python | bsd-3-clause | 32,977 | [
"Brian"
] | 955fb65cbc819f3ddaf5ed9bcaaee7cabd82a2ec06a0592597b224bba7db450a |
# -*- coding: utf-8 -*-
from setuptools import setup
from triggerd import __description__, __program__, __version__
def read(filename):
with open(filename) as f:
return f.read()
setup(
name=__program__,
version=__version__,
author='Brian Beffa',
author_email='brbsix@gmail.com',
desc... | brbsix/triggerd | setup.py | Python | gpl-3.0 | 1,934 | [
"Brian"
] | 5f22e4aea4f6c58a3312c809d75a1275828e60939443a010402c5f9b444a9482 |
from datetime import timedelta
import datetime
from django.utils.translation import ugettext_noop
from django.utils import html
from casexml.apps.case.models import CommCareCase
from django.core.urlresolvers import reverse, NoReverseMatch
from django.utils.translation import ugettext as _
from corehq.apps.reports.stand... | puttarajubr/commcare-hq | custom/apps/crs_reports/reports.py | Python | bsd-3-clause | 7,704 | [
"VisIt"
] | 8ca1b755fe14d1ef5cd29f847d9cf1605982a8596fb5b7399c7bdacb7056c67f |
# -*- coding: utf-8 -*-
# @Author: YangZhou
# @Date: 2015-10-20 22:19:29
# @Last Modified by: YangZhou
# @Last Modified time: 2017-06-18 22:40:43
import aces.tools as tl
import aces.config as config
from ase.io import read
from aces.runners import Runner
from aces.graph import plot
import numpy as np
class runne... | vanceeasleaf/aces | aces/runners/phonts.py | Python | gpl-2.0 | 3,727 | [
"ASE",
"LAMMPS"
] | c7a92f97b215145e20552d84a9daca0ea04b6e8179f2331d5f1aaf9937ba946f |
"""
Adapted from https://github.com/karpathy/pytorch-normalizing-flows
"""
import numpy as np
import torch
import torch.nn.functional as F
from torch import nn
import pdb
# from nflib.nets import LeafParam, MLP, ARMLP
class AffineConstantFlow(nn.Module):
"""
Scales + Shifts the flow by (learned) constants p... | JannerM/gamma-models | gamma/flows/flows.py | Python | mit | 10,059 | [
"Gaussian"
] | fc54a38d1aeeb99d08630ecf78e54c523851111323bb401583c001d21fd30ec6 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RProtgenerics(RPackage):
"""S4 generic functions for Bioconductor proteomics infrastructur... | LLNL/spack | var/spack/repos/builtin/packages/r-protgenerics/package.py | Python | lgpl-2.1 | 973 | [
"Bioconductor"
] | 8e1c67dc1245d8978fb09170b5ece3267b369b6b48f6465c15041cf41ca6de21 |
r"""
Constructing workflows (:mod:`skbio.workflow`)
==============================================
.. currentmodule:: skbio.workflow
Construct arbitrarily complex workflows in which the specific methods run are
determined at runtime. This module supports short circuiting a workflow if an
item fails, supports ordering... | xguse/scikit-bio | skbio/workflow.py | Python | bsd-3-clause | 18,987 | [
"exciting",
"scikit-bio"
] | f3a3817dfdf37bf0fdd060b35f7f3e316f140b019e1c476cc99de38f09813ae4 |
# -*- coding: utf-8 -*- ?
import config
from app import app
import time
import os
import json
import sqlite3 as sqlite
DATABASE_URL = os.environ.get("DATABASE_URL", default = "escv.db")
USER_IMAGES_PATH = "../static/img/users/user_%s.jpg"
ROOM_IMAGES_PATH = "../static/img/rooms/room_%s.jpg"
def user_visits(user_id, ... | alxmamaev/ESCV | app/base.py | Python | gpl-3.0 | 3,877 | [
"VisIt"
] | 28bfc8a82cd559d3adeba4805736384c85011321231e76a61bdaec1625ff64d7 |
# -*- coding: utf-8 -*-
# Copyright (c) 2010-2016 OpenStack Foundation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... | rackerlabs/swift | test/unit/proxy/test_server.py | Python | apache-2.0 | 420,732 | [
"MOOSE"
] | b5ae5dc1dea453683ed80c9ae52148ff04a7ca846d3d661bdf135f2fe0911b99 |
# coding: utf8
from __future__ import unicode_literals
NOUNS_IRREG = {
"aardwolves": ("aardwolf",),
"abaci": ("abacus",),
"aboideaux": ("aboideau",),
"aboiteaux": ("aboiteau",),
"abscissae": ("abscissa",),
"acanthi": ("acanthus",),
"acari": ("acarus",),
"acciaccature": ("acciaccatura",... | recognai/spaCy | spacy/lang/en/lemmatizer/_nouns_irreg.py | Python | mit | 65,169 | [
"FLEUR",
"Octopus"
] | c60eccc5e85b716c55ca54fe3eed0fa9fdee4d7778684db13391fffe97fcf001 |
#!/usr/bin/env python
__author__ = "Justin Kuczynski"
__copyright__ = "Copyright 2011, The QIIME Project"
__credits__ = ["Rob Knight", "Justin Kuczynski", "Daniel McDonald",
"Jai Ram Rideout"]
__license__ = "GPL"
__version__ = "1.9.1-dev"
__maintainer__ = "Justin Kuczynski"
__email__ = "justinak@gmail.c... | suranap/qiime | qiime/make_phylogeny.py | Python | gpl-2.0 | 9,019 | [
"BLAST"
] | 49f69323a7e6c28f41c48dc939edb27729454f5d4cef5c88d2b522ac70faef9b |
import ast as _ast
import cypy
import cypy.astx as astx
import cypy.cg as cg
import clq
from clq import TypeResolutionError
class Backend(clq.Backend):
"""A backend that centralizes logic common to C-based languages."""
def __init__(self, name):
clq.Backend.__init__(self, name)
def init_... | cyrus-/ace | clq/backends/base_c.py | Python | lgpl-3.0 | 29,850 | [
"VisIt"
] | f0344f98d8e1cfe3b00e85d5b646f81a8d07a6977913e6a0c972596b7fc20248 |
import unittest
import fix_import
import builder as be
import ast
class CounterVisitor:
def __init__(self):
self.group = 0
self.alt = 0
self.range = 0
self.match_begin = 0
self.match_end = 0
self.single_char = 0
self.pattern_char = 0
self.q_none_or... | VaysseB/id_generator | test/test_visitor.py | Python | gpl-3.0 | 2,024 | [
"VisIt"
] | 8de072455efd69574c46e5d16fbeb805dd8f4a0a3bba5edb03933b87c40d6f5b |
#
# Copyright 2001 - 2016 Ludek Smid [http://www.ospace.net/]
#
# This file is part of Outer Space.
#
# Outer Space is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (... | ospaceteam/outerspace | server/lib/ige/ospace/Const.py | Python | gpl-2.0 | 7,683 | [
"Galaxy"
] | 6373c0107444e3e57d18e6ece4712663791512774df08043ecfd457a4760cd9a |
import os
import sys
import yaml
import netCDF4
from docopt import docopt
__doc__ = """
Generate ncml based on a yaml file.
Usage:
yaml2ncml INFILE [--output=OUTFILE]
yaml2ncml (-h | --help | --version)
Examples:
yaml2ncml roms.yaml
yaml2ncml roms.yaml --output=roms.ncml
Arguments:
file yam... | rsignell-usgs/yaml2ncml | yaml2ncml/yaml2ncml.py | Python | mit | 8,268 | [
"NetCDF"
] | 94dec5b906bc8215495cfb8786d394b771291eacfe663ea5adb963485b5117f7 |
# Installs a netCDF file with the files/install_path convention
import sys
import os
from giss import ncutil
#ifname = sys.argv[1]
#odir = sys.argv[2]
odir = os.path.join(os.environ['HOME'], 'modele_input', 'local')
ncutil.install_nc('GIC.144X90.DEC01.1.ext_1_EC2.nc', odir)
ncutil.install_nc('Z2HX2fromZ1QX1N_EC2-leg... | citibeth/twoway | landice2/install.py | Python | gpl-3.0 | 648 | [
"NetCDF"
] | a7a2a47fe05edc37e74f912656d57312a8a1151772ec8d78021b135086882ec1 |
# (c) 2012, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any lat... | gentledevil/ansible | lib/ansible/template/safe_eval.py | Python | gpl-3.0 | 4,154 | [
"VisIt"
] | 9469558a5e802249950b410da3b6693a79273c5ec643c633a6035857ba1553b1 |
# -*- coding: utf-8 -*-
"""
Output Plugin for LAME (for 3.98 or later)
Copyright (c) 2006-2008 by Nyaochi
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or... | rinrinne/cueproc-alternative | src/ce_lame.py | Python | gpl-2.0 | 3,523 | [
"VisIt"
] | 0eaed642b2ac7e9ae27f112c62b6daec5069b4fc2ce81e65c9a9e301e1abc254 |
#!/usr/bin/env python
##calculate_relative_adaptiveness.py
##written 9/15/15 by Groves Dixon
ProgramName = 'calculate_relative_adaptiveness.py'
LastUpdated = '9/15/15'
By = 'Groves Dixon'
VersionNumber = '1.0'
print "\nRunning Program {}...".format(ProgramName)
VersionString = '{} version {} Last Updated {} by {}'.for... | grovesdixon/metaTranscriptomes | scripts/calculate_relative_adaptiveness.py | Python | mit | 5,905 | [
"BLAST"
] | fc0a2abe3139bd7937d52fa440a82f6582d047b2a6ae47318d86d044730e22e5 |
# Description: Functions to perform statistical calculations.
# Author: André Palóczy
# E-mail: paloczy@gmail.com
__all__ = ['gauss_curve',
'principal_ang',
'nmoment',
'skewness',
'kurtosis',
'rcoeff',
'autocorr',
'crosscorr',
'Tdecorr',
'Tdecorrw',
'Ne... | paloczy/ap_tools | stats.py | Python | mit | 21,964 | [
"Gaussian"
] | 2bceb97ec191b5c353dcc888b839d097d3a2129febbed641f913d6aba113c0f6 |
"""Functions for learning S2 prototypes."""
# Copyright (c) 2011-2013 Mick Thomure
# All rights reserved.
#
# Please see the file LICENSE.txt in this distribution for usage terms.
import logging
import numpy as np
import operator
from glimpse.backends import ACTIVATION_DTYPE
from glimpse.util.grandom import Histogra... | mthomure/glimpse-project | glimpse/prototypes/prototypes.py | Python | mit | 11,098 | [
"Gaussian"
] | c5d7e85a1063fad656cfde520e3dc974b05569b59b1c8cdcbdea725e13983076 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module provides core classes needed by all define electronic structure,
such as the Spin, Orbital, etc.
"""
__author__ = "Shyue Ping Ong"
__copyrigh... | aykol/pymatgen | pymatgen/electronic_structure/core.py | Python | mit | 1,646 | [
"VASP",
"pymatgen"
] | d0b2c8f044f13b07b811be5ef720951f104a6f7290d55ca8ecf7559309afd65b |
## This file is part of Invenio.
## Copyright (C) 2008, 2009, 2010, 2011, 2012 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of the
## License, or (at your option) any ... | GRArmstrong/invenio-inspire-ops | modules/miscutil/lib/dbquery.py | Python | gpl-2.0 | 20,187 | [
"BLAST"
] | 2931e1bb458ef0bc939a6fe2885b409f718afac7304619e8e8385f2e69788df0 |
from rdkit import Chem
import statsmodels.formula.api as sm
import simtk.unit as u
import polarizability
import seaborn as sns
import matplotlib.pyplot as plt
import pandas as pd
sns.set_palette("bright")
sns.set_style("whitegrid")
d = pd.read_table("/home/kyleb/src/choderalab/oeante/oeante/gaff/gaffsmarts.txt", name... | choderalab/LiquidBenchmark | src/figures/old/plot_functional_groups.py | Python | gpl-2.0 | 2,575 | [
"RDKit"
] | 7a067640b26e512deb713f2ae90295be3c5ab2053c5284a59ff7717571de23fd |
from pyramid.config import Configurator
from pyramid.authorization import ACLAuthorizationPolicy
from pyramid.authentication import AuthTktAuthenticationPolicy
from .security import groupfinder
def main(global_config, **settings):
""" This function returns a Pyramid WSGI application.
"""
config = Configur... | AlissonMMenezes/Octopus | server/octopus/__init__.py | Python | gpl-2.0 | 930 | [
"Octopus"
] | f9226265cd252bce532003f65f9c7d91fc47591e533b313a5c659cb8957aa403 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# getrespgid - Get PGID of process on resource for kill in clean up
# Copyright (C) 2003-2014 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of t... | heromod/migrid | mig/shared/functionality/getrespgid.py | Python | gpl-2.0 | 6,023 | [
"Brian"
] | cbf78de0d608ad3a00a2d4d116328332b8843691fd18c624130dbbf6e71ab6eb |
#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU ... | tatiana/invesalius | invesalius/data/editor.py | Python | gpl-2.0 | 8,414 | [
"VTK"
] | 7b50503adc8f114808b68fdc1c22a7b2d077dffb683c9bec95b25afe3329b76c |
"""\
Routines to read/write information from/to Jaguar files
This program is part of the PyQuante quantum chemistry program suite.
Copyright (c) 2004, Richard P. Muller. All Rights Reserved.
PyQuante version 1.2 and later is covered by the modified BSD
license. Please see the file LICENSE that is part of this... | berquist/PyQuante | PyQuante/IO/Jaguar.py | Python | bsd-3-clause | 2,322 | [
"Jaguar"
] | 1416b1acca282d7c03421bd7d460048cd0b31d1097408f7a4756ee3960a66f77 |
# -*- encoding: utf-8 -*-
#
# amara.writers
# © 2008, 2009 by Uche Ogbuji and Zepheira LLC
#
"""amara.writers
Implements Amara's support for serializing trees as XML, HTML, or XHTML.
Functions for public use:
lookup(str) : Returns a printer object for writing DOM elements.
register(str, class) : Re... | zepheira/amara | lib/writers/__init__.py | Python | apache-2.0 | 11,623 | [
"VisIt"
] | 108c748c1e675626c7fdbac07c3459e1cb74adcf2702245b64944d8601c5b30b |
r"""
Linear elasticity with linear combination constraints and periodic boundary
conditions.
The linear combination constraints are used to apply periodic boundary
conditions with a shift in the second axis direction.
Find :math:`\ul{u}` such that:
.. math::
\int_{\Omega} D_{ijkl}\ e_{ij}(\ul{v}) e_{kl}(\ul{u})
... | rc/sfepy | examples/linear_elasticity/elastic_shifted_periodic.py | Python | bsd-3-clause | 4,053 | [
"VTK"
] | a3aac88af33329c84dd6e8a224cf562325bfdcab1ca377a37aa87b999afc8041 |
r"""
Empirical Power Estimation (:mod:`skbio.stats.power`)
=====================================================
.. currentmodule:: skbio.stats.power
The purpose of this module is to provide empirical, post-hoc power estimation
of normally and non-normally distributed data. It also provides support to
subsample data ... | Achuth17/scikit-bio | skbio/stats/power.py | Python | bsd-3-clause | 51,433 | [
"scikit-bio"
] | 6fe98d275b93d23d79b9bc3f5b4f300f4110a662d8083cdb6a4148f455e87124 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | benoitsteiner/tensorflow-opencl | tensorflow/contrib/gan/python/eval/python/classifier_metrics_impl.py | Python | apache-2.0 | 17,350 | [
"Gaussian"
] | bb9c9e56f66dc4cd508cd010e665a8d4476fa6071a578a6daa09ce1e2a396f72 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | psi4/driver/p4util/inpsight.py | Python | gpl-2.0 | 23,238 | [
"Jmol",
"Psi4"
] | 854fd40f7dd2ddeb7d11a6e8300510c8541feb74c6c9bcb3af55dbe061bbd0e7 |
import asyncio
import random
import discord
from discord.ext import commands
from discord.utils import get
from yutu import bot
from pony import orm
class Games(commands.Cog):
Player = None
def __init__(self, bot: bot.Yutu):
super().__init__()
class Player(bot.db.Entity):
id = o... | HarkonenBade/yutu | cogs/games.py | Python | mit | 3,812 | [
"CASINO"
] | ae71b7678b280860185f187ddc594dbe186739e9f20f0961f5e6c4a1bc3e8c18 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class CandleBenchmarks(Package):
"""ECP-CANDLE Benchmarks"""
homepage = "https://github.com... | LLNL/spack | var/spack/repos/builtin/packages/candle-benchmarks/package.py | Python | lgpl-2.1 | 1,624 | [
"MDAnalysis"
] | 317ac67e8e9848e4e2101e0247b2f5d94cac623172eefcb4e6f868aeeb369743 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/pbc/scf/krohf.py | Python | apache-2.0 | 18,049 | [
"PySCF"
] | 4b08fdc45f9a0bedc3f5e989b04db47334d736e89fde445db715b1cff0464519 |
""" Principal Component Analysis
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Mathieu Blondel <mathieu@mblondel.org>
# Denis A. Engemann <denis-alexander.engemann@inria.fr>
# Michael Eickenberg <michael.eickenberg@inria.fr>... | Titan-C/scikit-learn | sklearn/decomposition/pca.py | Python | bsd-3-clause | 29,099 | [
"Gaussian"
] | 2109f3e775803ff99808aec734a0dcedff16bc3828f2b901fccad92662c16759 |
import numpy as np
from kspclib import (get_snf3x3, snf_transform_rotations,
get_all_grgrid_addresses,
get_double_grgrid_address,
get_grgrid_index,
get_double_grgrid_index,
get_grgrid_address_from_index,
... | atztogo/kspclib | python/test/test_grgrid.py | Python | bsd-3-clause | 17,538 | [
"CRYSTAL",
"VASP",
"phonopy"
] | 33a5ee5e2e2aaef6e8dac02898d81259734e856a8502b1c3fc3c42befb3d0316 |
"""Core visualization operations."""
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Eric Larson <larson.eric.d@gmail.com>
# Joan Massich <mailsik@gmail.com>
# Guillaume Favelier <guillaume.favelier@gmail.com>
#
# License: Simplified BSD
from contextlib import contextmanager
i... | cjayb/mne-python | mne/viz/backends/renderer.py | Python | bsd-3-clause | 9,714 | [
"Mayavi"
] | f6abf470aecb4e01bd0c14a86c3a91a6c25f6f816b6de13f2740c180c5f491b3 |
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.
import ast
import io
import operator
import os
import sys
import textwrap
import token
import tokenize
class Visitor(ast.NodeVisitor):
def __init__(self, lines):
self._lines = lines
self.line_numbers_wit... | glenngillen/dotfiles | .vscode/extensions/ms-toolsai.jupyter-2021.6.832593372/pythonFiles/normalizeForInterpreter.py | Python | mit | 5,187 | [
"VisIt"
] | c04998413e3f934ab19db66c37630d0e79a8e47488071a690a573e433dc3cb6c |
# coding=utf-8
from __future__ import unicode_literals
from .. import Provider as PersonProvider
class Provider(PersonProvider):
formats = (
'{{first_name}} {{last_name}}',
'{{first_name}} {{last_name}}',
'{{first_name}} {{last_name}}',
'{{first_name}} {{last_name}}',
'{{fir... | Nebucatnetzer/tamagotchi | pygame/lib/python3.4/site-packages/faker/providers/person/no_NO/__init__.py | Python | gpl-2.0 | 7,122 | [
"MOE"
] | 006be7a5214e3d4611e3c219f67182abf97fcda0f040927d2ebfd355c15722ec |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | lothian/psi4 | psi4/driver/p4util/exceptions.py | Python | lgpl-3.0 | 9,507 | [
"Psi4"
] | 86bfcb71d934a2b66b523c7973343d8922dc34a7a6ef7cc2f3ffe140ae5db284 |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | KaiSzuttor/espresso | samples/slice_input.py | Python | gpl-3.0 | 2,681 | [
"ESPResSo"
] | 5a8429dcff6e3025603eb8ed59ed94e580c7e1bdd92fdeb9077ac32550f3c806 |
#!/usr/bin/env python
# Copyright 2012 splinter authors. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
import unittest
from splinter import Browser
class TestGoogleSearch(unittest.TestCase):
@classmethod
def setUpClass(cls):
... | bmcculley/splinter | samples/test_google_search.py | Python | bsd-3-clause | 1,099 | [
"VisIt"
] | 3f1df07f1a4e9ee8985b439361b3b32bd44a370dfc097a64ff2cd4a73195d0b6 |
"""
Sampling along tracks
---------------------
The :func:`pygmt.grdtrack` function samples a raster grid's value along specified
points. We will need to input a 2D raster to ``grid`` which can be an
:class:`xarray.DataArray`. The argument passed to the ``points`` parameter can be a
:class:`pandas.DataFrame` table whe... | GenericMappingTools/gmt-python | examples/gallery/images/track_sampling.py | Python | bsd-3-clause | 1,614 | [
"NetCDF"
] | 3d2eee2db7c56afe8ed69e75622ae3d89cdc73ca2600e5b930bed099735e09c3 |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
#
ANSIB... | ravibhure/ansible | lib/ansible/modules/network/avi/avi_actiongroupconfig.py | Python | gpl-3.0 | 5,439 | [
"VisIt"
] | edee5c12bd55fad35de96bcd9d996646f6b6fa5ebbebc6495d0b9c8f845c8095 |
#
# This source file is part of appleseed.
# Visit https://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2019 Jonathan Dent, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
#... | dictoon/blenderseed | ui/materials.py | Python | mit | 5,378 | [
"VisIt"
] | 5649486f6a0a7a4c031fff50d577558e489ed575866cf5ec4323d970a1e6a1c4 |
"""XML-RPC Servers.
This module can be used to create simple XML-RPC servers
by creating a server and either installing functions, a
class instance, or by extending the SimpleXMLRPCServer
class.
It can also be used to handle XML-RPC requests in a CGI
environment using CGIXMLRPCRequestHandler.
The Doc* classes can be... | MalloyPower/parsing-python | front-end/testsuite-python-lib/Python-3.1/Lib/xmlrpc/server.py | Python | mit | 32,062 | [
"Brian"
] | 66b0073fc943c4ac54dc3cf59f3873c3956c0481672643be42b0da08d1165046 |
import sys
class Out:
def write(self, x):
sys.__stdout__.write(x)
raise RuntimeError('not silent')
out, err = sys.stdout, sys.stderr
sys.stdout = sys.stderr = Out()
try:
from gpaw import GPAW, FermiDirac
from ase import Atom, Atoms
a = 5.0
h = 0.2
calc = GPAW(h=h, nbands=1, kp... | robwarm/gpaw-symm | gpaw/test/stdout.py | Python | gpl-3.0 | 733 | [
"ASE",
"GPAW"
] | 373775d04df45955e5faec17b41def62d871885f54f30bccf0369d557e5c5d6d |
#!/usr/bin/env python
"""pretty.py will color text for Xterm/VT100 type terminals using ANSI Escape Sequences
A library that provides a Python print, stdout, and string wrapper that makes colored terminal
text easier to use(e.g. without having to mess around with ANSI escape sequences).
Referance Materials:
Col... | HelloClarice/ClariceNet | Pit/RaspberryPi/daemons/pretty.py | Python | gpl-3.0 | 2,708 | [
"Brian"
] | 2b4540df4665e398a9dacc91bba8f707b4db51de38b4935990c84357f7c41732 |
import numpy, theano
import theano.tensor as T
from theano.sandbox.rng_mrg import MRG_RandomStreams as RandomStreams
from collections import OrderedDict
class RBM(object):
"""Bernoulli-bernoulli restricted Boltzmann machine (RBM) """
def __init__(self, input=None, n_visible=100, n_hidden=1000,
... | IITM-DONLAB/python-dnn | src/pythonDnn/layers/rbm.py | Python | apache-2.0 | 9,548 | [
"Gaussian"
] | 9870336235fdc93e777c588d0dc2c34a2b3c5bd44cb11a0d760f2c72b6574e47 |
"""TIP3P potential, constraints and dynamics."""
from math import pi, sin, cos
import numpy as np
import ase.units as units
from ase.parallel import world
from ase.md.md import MolecularDynamics
qH = 0.417
sigma0 = 3.15061
epsilon0 = 0.1521 * units.kcal / units.mol
rOH = 0.9572
thetaHOH = 104.52 / 180 * pi
class T... | grhawk/ASE | tools/ase/calculators/tip3p.py | Python | gpl-2.0 | 5,939 | [
"ASE"
] | 7785f822a233bc9ed36111444fc1de196282511fc71e6ff9aeab80bdd4d21224 |
#!/usr/bin/env python
import os
import matplotlib
matplotlib.use('Agg')
import seaborn as sns
sns.set_style('white')
import matplotlib.pyplot as plt
from ase_utils.myabinit import read_output
from ase_utils.kpoints import cubic_kpath
from ase.io.vasp import write_vasp
from pyFA.abinit import DDB_reader
from pyFA.ifc im... | mailhexu/pyDFTutils | resource/phonon_ana/phonana.py | Python | lgpl-3.0 | 16,818 | [
"ABINIT",
"ASE",
"VASP"
] | b741aee3263478991b715b1bafcde47eecf3b19cb6a1206b615baa4b448f5bf8 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/core/ui/aboutdialog.py | Python | gpl-2.0 | 38,586 | [
"Brian"
] | 07133127c68e93c66cad24390aaa9727c510f000674ac8fd69e9f3f60c7f3e11 |
# Copyright 2013 Colm Ryan colm@colmryan.org
# License GPL v3 (http://www.gnu.org/licenses/gpl.txt)
"""
Plotting synteny functions.
Requires: matplotlib; pandas; Biopython
"""
import pandas as pd
import numpy as np
import re
import subprocess
from cStringIO import StringIO
import matplotlib.pyplot as plt
import... | caryan/PyBio | Synteny.py | Python | gpl-3.0 | 3,705 | [
"Biopython"
] | 7c8ad16b8df42ab445ebc3a587eacbd279eb9a1b9329dc518244621c0256ccfe |
# encoding: utf-8
"""
Enable wxPython to be used interacive by setting PyOS_InputHook.
Authors: Robin Dunn, Brian Granger, Ondrej Certik
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the... | AMOboxTV/AMOBox.LegoBuild | script.module.pydevd/lib/pydev_ipython/inputhookwx.py | Python | gpl-2.0 | 6,063 | [
"Brian"
] | b502ef3b5b9e942c8058184f68902a9dab597ac29581f0e7f646c74f741a2250 |
#! /usr/bin/env python3
#
# update_po - a gramps tool to update translations
#
# Copyright (C) 2006-2006 Kees Bakker
# Copyright (C) 2006 Brian Matherly
# Copyright (C) 2008 Stephen George
# Copyright (C) 2012
# Copyright (C) 2020 Nick Hall
#
# This program is free software; you can redistribute it a... | SNoiraud/gramps | po/update_po.py | Python | gpl-2.0 | 17,892 | [
"Brian"
] | 740f56045c625ed79a2656d5ed3553b6f367b57934528f9d19708b6ff85fd28b |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views import defaults as default_views
from go_green.users.views import UserViewSet
from go... | TraMZzz/GoGreen | config/urls.py | Python | mit | 1,427 | [
"VisIt"
] | 09217c433b7abdf5d36c14f45da0e5a37657712e3abe9c504abab6e058c5e356 |
"""Simple, inelegant Sphinx extension which adds a directive for a
highlighted code-block that may be toggled hidden and shown in HTML.
This is possibly useful for teaching courses.
The directive, like the standard code-block directive, takes
a language argument and an optional linenos parameter. The
hidden-code-bl... | geaaru/database-release-manager | docs/sphinx/hidden_literalinclude.py | Python | gpl-2.0 | 3,665 | [
"VisIt"
] | 3fa2162f4df70495096db82beda39bc34c146e89ddbb1cdb8c380e74d64904f8 |
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