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#
# ImageViewJpw.py -- Module for a Ginga FITS viewer in a Jupyter web notebook.
#
# This is open-source software licensed under a BSD license.
# Please see the file LICENSE.txt for details.
#
"""
This example illustrates using a Ginga as the driver of a Jupyter web widget.
REQUIREMENTS:
To use this code you will ne... | naojsoft/ginga | ginga/web/jupyterw/ImageViewJpw.py | Python | bsd-3-clause | 16,512 | [
"FLEUR"
] | c53d872461cb784c7c1ef4e33aae8af2f03f5353d7aff04efc3c13624dae24ad |
"""
DIRAC API Class
All DIRAC functionality is exposed through the DIRAC API and this
serves as a source of documentation for the project via EpyDoc.
The DIRAC API provides the following functionality:
- A transparent and secure way for users
to submit jobs to the Grid, monitor them and
re... | petricm/DIRAC | Interfaces/API/Dirac.py | Python | gpl-3.0 | 100,414 | [
"DIRAC"
] | 958c0a64e7db7496bcb5613c43a7be7894ec88e4e343028f2859c735f74c0a12 |
"""THis module contains the core functions needed to compute pam models"""
import logging
import random
import bpy
import mathutils
import numpy
from . import constants
from . import grid
from . import model
from . import exceptions
from . import layer
from . import connection_mapping
from .mesh import *
import mul... | MartinPyka/Parametric-Anatomical-Modeling | pam/pam.py | Python | gpl-2.0 | 34,811 | [
"NEURON"
] | ccaee7eb07d77dbabebfcdfa8cd510b39d8c3fb2fe2c1a9de77d37868ef7fca3 |
#!/usr/bin/env python
# coding: utf-8
#
# This file originates from the Rietveld project:
# https://github.com/rietveld-codereview/rietveld/blob/
# 80a51fa637f416b8e9f192f9394bed2aca5ea1c3/upload.py
#
# Local changes:
# * added 'from __future__ import print_function'
# * changed 'print' into 'print()'
# * changes for P... | Onager/l2treviewtools | l2treviewtools/lib/upload.py | Python | apache-2.0 | 100,975 | [
"VisIt"
] | e94605a64977965748e9db6f252411eb3c6f3c0b907cb59bfd2d7c277b71521d |
# (c) 2012-2014, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | b-dollery/testing | lib/ansible/utils/__init__.py | Python | gpl-3.0 | 58,304 | [
"Galaxy",
"VisIt"
] | ee4408fcf2207f04a6e53df5ef3d312346a929a53693c7be8d2395ee4580150b |
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis A. Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
import copy as cp
import os
from math import floor, ceil, log
import itertools as itt
import warnings
from c... | rajegannathan/grasp-lift-eeg-cat-dog-solution-updated | python-packages/mne-python-0.10/mne/cov.py | Python | bsd-3-clause | 72,176 | [
"Gaussian"
] | 50519918fb9bcb7f27a4a6cbb213fb46f7e29bfddd063b38ddb3ca7cf3e354dd |
"""
This module computes the Structured Similarity Image Metric (SSIM)
Created on 21 nov. 2011
@author: Antoine Vacavant, ISIT lab, antoine.vacavant@iut.u-clermont1.fr, http://isit.u-clermont1.fr/~anvacava
Modified by Christopher Godfrey, on 17 July 2012 (lines 32-34)
Modified by Jeff Terrace, starting 29 August 2012... | Rolinh/pyuvssim | ssim.py | Python | bsd-3-clause | 3,612 | [
"Gaussian"
] | 91ccbf036f8728f4312afac68479ff2854030a70203d42660da2cb981f0d29c3 |
"""
Filename: gth_solve.py
Author: Daisuke Oyama
Routine to compute the stationary distribution of an irreducible Markov
chain by the Grassmann-Taksar-Heyman (GTH) algorithm.
"""
import numpy as np
from numba import jit
from .external import numba_installed, jit
if not numba_installed:
try:
xrange
e... | mgahsan/QuantEcon.py | quantecon/gth_solve.py | Python | bsd-3-clause | 4,553 | [
"Gaussian"
] | dcdf503cc234764f2a9890f293f565f48c8d08175fa9b63568fdd71ac1b56ee7 |
###############################################################################
# #
# This program is free software: you can redistribute it and/or modify #
# it under the terms of the GNU General Public License as published by ... | ctSkennerton/CompareM | comparem/aai_calculator.py | Python | gpl-3.0 | 14,355 | [
"BLAST"
] | fdc26ab5dbd2ee6d97bfb34494c37389c19d2702f2a8fb6d8413243f02691f6b |
"""
PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
Copyright (C) 2004-2015 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
Brett G. Olivier (bgoli@users.sourceforge.net)
Triple-J Group for Molecular Cell Physiology
Stellenbosch University, South Africa.
Permiss... | asttra/pysces | pysces/PyscesSBML.py | Python | bsd-3-clause | 29,664 | [
"PySCeS"
] | 3e2c81e5ce26f94a9246a57456928e0c23cc687d09d6101047676c9971c38fe4 |
from __future__ import division, print_function, absolute_import
__all__ = ['fixed_quad','quadrature','romberg','trapz','simps','romb',
'cumtrapz','newton_cotes']
from scipy.special.orthogonal import p_roots
from scipy.special import gammaln
from numpy import sum, ones, add, diff, isinf, isscalar, \
a... | valexandersaulys/airbnb_kaggle_contest | venv/lib/python3.4/site-packages/scipy/integrate/quadrature.py | Python | gpl-2.0 | 27,849 | [
"Gaussian"
] | 1e3bf149f6368d8f6c04efaf57d9127ecab20ff9deed7c7a4c6d9330c28a3d90 |
import base, random, time
import entity.status.player_statuses as s
import math
class ModifyItems(base.Entity):
def __init__(self):
pass
def do_turn(self,target,damage):
pass
def to_str(self):
return "Modified"
def get_cost(self):
return self.cost
class Common(ModifyItems):
def apply(self):
pass
de... | microwaveabletoaster/dunces-and-dungeons | entity/item/armor_modification.py | Python | gpl-3.0 | 8,681 | [
"BLAST"
] | 22912f13c72fba93457c13d73a69dc13fd0148ef64032289d4bcaf60c0b8f3f2 |
#!/usr/bin/env python
"""script to concatenate the dirac.cfg file's Systems sections with the content of the ConfigTemplate.cfg files."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from collections import OrderedDict
import logging
import os
import re
i... | yujikato/DIRAC | docs/diracdoctools/cmd/concatcfg.py | Python | gpl-3.0 | 5,101 | [
"DIRAC"
] | cb01e442948de3dbf92933354d43da7706ec7697b759cf7396c8fbf6fafa2bb7 |
"""
Support the ElkM1 Gold and ElkM1 EZ8 alarm / integration panels.
For more details about this platform, please refer to the documentation at
https://home-assistant.io/components/elkm1/
"""
import logging
import re
import voluptuous as vol
from homeassistant.const import (
CONF_EXCLUDE, CONF_HOST, CONF_INCLUDE... | PetePriority/home-assistant | homeassistant/components/elkm1/__init__.py | Python | apache-2.0 | 8,132 | [
"Elk"
] | 07c7d99bedc364e6b93513cac4dc62e1376d9b96393c2d6ba9f6a26a61ac101d |
"""SSD1306 OLED driver, I2C and SPI interfaces"""
# MicroPython SSD1306 OLED driver, I2C and SPI interfaces
import time
import framebuf
from adafruit_bus_device import i2c_device, spi_device
from micropython import const
__version__ = "0.0.0-auto.0"
__repo__ = "https://github.com/adafruit/Adafruit_CircuitPython_SSD13... | rosalindfdt/huzzahbadge | huzzah/adafruit_ssd1306.py | Python | artistic-2.0 | 7,889 | [
"BLAST"
] | 13ca60f98f8262287acfcf9b5b559cb12f47964aa364baffa51aaa1c5628a7c1 |
"""Tools to build the DIRAC documentation.
Scripts to build code documentation, and also some mocking, etc.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
# list of packages that should be mocked in sphinx
# TODO: check if we can install more of these... | ic-hep/DIRAC | docs/diracdoctools/__init__.py | Python | gpl-3.0 | 507 | [
"DIRAC"
] | a3ba56b40f01cc7704f22a5f36b741102c7470e989af04015a9e5eda915b6c0b |
from __future__ import division, absolute_import, print_function
import warnings
import sys
import collections
import operator
import numpy as np
import numpy.core.numeric as _nx
from numpy.core import linspace, atleast_1d, atleast_2d, transpose
from numpy.core.numeric import (
ones, zeros, arange, concatenate, a... | kiwifb/numpy | numpy/lib/function_base.py | Python | bsd-3-clause | 156,297 | [
"Gaussian"
] | e63969ae8ec73eab300b90331c4b441968453738648a9370f765e1fb61737242 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
compliance_checker/cfutil.py
"""
import csv
import re
import warnings
from collections import defaultdict
from functools import lru_cache, partial
from cf_units import Unit
from pkg_resources import resource_filename
_UNITLESS_DB = None
_SEA_NAMES = None
VALID_LAT_... | ocefpaf/compliance-checker | compliance_checker/cfutil.py | Python | apache-2.0 | 60,433 | [
"NetCDF"
] | 59cc2f937694126fcaa245e337da999d2e459916355f340e39515f5ba8619100 |
"""
Handles URL downloads.
This is the low-level interface for downloading interfaces, implementations, icons, etc.
@see: L{fetch} higher-level API for downloads that uses this module
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import tempfile, os
from ... | rammstein/0install | zeroinstall/injector/download.py | Python | lgpl-2.1 | 6,542 | [
"VisIt"
] | d05f885a99daac80600721ce52e7221c0f49f58dd7702d646ca8f3166fbec466 |
from common import Modules, data_strings, load_yara_rules, PEParseModule, ModuleMetadata, is_ip_or_domain
class Solar(PEParseModule):
def __init__(self):
md = ModuleMetadata(
module_name="solar",
bot_name="Solar",
description="Botnet",
authors=["Brian Wallac... | bwall/bamfdetect | BAMF_Detect/modules/solarbot.py | Python | mit | 1,621 | [
"Brian"
] | f530c8c9de5a6186712347f4cef1ba7a22aa4c2c27b6fbcaa39ef61681bea9f0 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkStreamTracer(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.v... | chrisidefix/devide | modules/vtk_basic/vtkStreamTracer.py | Python | bsd-3-clause | 500 | [
"VTK"
] | 71af97e82bc67abbbac5be2712303f9ee81656d4f3fae18b798d0d1f6f602528 |
import ezPyCrypto
import json
import logging
import os
import random
import smtplib
import tinyurl
import unicodedata
import urllib
from email.mime.text import MIMEText
from community_csdt.src.models import database
class RegisterPublic(object):
def __init__(self, parent, name):
self.__parent__ = parent
... | electricity345/community.csdt | src/community_csdt/community_csdt/src/models/register/register_public.py | Python | mit | 7,452 | [
"VisIt"
] | 9645f1d32a3cdcb70b165f1dc25b98f96d103da34fd724c4cfe36daa87690f38 |
#!/usr/bin/env python3
"""
Copyright 2021 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 ... | pwillworth/galaxyharvester | html/getTopResSchematic.py | Python | gpl-3.0 | 10,835 | [
"Galaxy"
] | 282579d99a6af9e5f2493fe8c251266576f0db29b7630732133a323dfe871e4b |
#
# gPrime - A web-based genealogy program
#
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2008 Gary Burton
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version ... | sam-m888/gprime | gprime/plug/menu/_menu.py | Python | gpl-2.0 | 4,222 | [
"Brian"
] | 28c989f686bec286294752dd26cbfd7b33ae04323d2139c390f2a8944565d08f |
# This file contains the description of base options
CONFIG_OPTIONS = {
'general': {'g': "Gravitational constant. Default is 981 cm/s^2. Type:float."},
'experiment': \
{'exp_type': ("Identifier of type of experiment do determine which "
"module should be used. Type: string"),
... | bmcage/centrifuge-1d | centrifuge1d/modules/base/options.desc.py | Python | gpl-2.0 | 16,567 | [
"Gaussian"
] | e30071f8d072b30ffdca7016270e2868ed25e8d21d450b608a8355e60763832b |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
urlpat... | michaelrios/TeachModern | config/urls.py | Python | mit | 1,498 | [
"VisIt"
] | 98d0b9cebeec510705f676b689e197c9691f03ebd631a6e30529ae5405e20599 |
# -*- coding: utf-8 -*-
import pytest
from unit.applications.lang.python import TestApplicationPython
from unit.option import option
class TestRouting(TestApplicationPython):
prerequisites = {'modules': {'python': 'any'}}
def setup_method(self):
assert 'success' in self.conf(
{
... | nginx/unit | test/test_routing.py | Python | apache-2.0 | 70,973 | [
"FEFF"
] | 4c6383445b7e678b12033df52360c5022177d01635394e28fd1dcda766e8d882 |
def dfs_iterative(adjLists, s):
stack = []
stack.append(s)
n = len(adjLists)
visited = []
for i in range(0,n):
visited.append(False)
while(len(stack)>0):
v = stack.pop()
if(not visited[v]):
visited[v] = True
print v
# auxili... | AbhiAgarwal/prep | python/iterative_dfs.py | Python | mit | 1,096 | [
"VisIt"
] | 2323f5a3411ee730b9f4816217d63d551d410047591bfb50dbd1f8cebbdf26b8 |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
import subp... | harterj/moose | python/TestHarness/tests/test_FailedTests.py | Python | lgpl-2.1 | 1,594 | [
"MOOSE"
] | 98e98decab8d7c652494a7601a71f4bf4abee8c12b0ff61b938f134aeda7d0a0 |
"""
The Grid module contains several utilities for grid operations
"""
import os
import re
from DIRAC.Core.Utilities.Os import sourceEnv
from DIRAC.FrameworkSystem.Client.ProxyManagerClient import gProxyManager
from DIRAC.Core.Security.ProxyInfo import getProxyInfo
from DI... | Andrew-McNab-UK/DIRAC | Core/Utilities/Grid.py | Python | gpl-3.0 | 15,618 | [
"DIRAC"
] | ece71179a5b7827545634803f812f622555e88b973b9c3ee41fb27ea76ddc0a7 |
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2006 Donald N. Allingham
# Copyright (C) 2008,2012 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Paul Franklin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | dermoth/gramps | gramps/plugins/textreport/simplebooktitle.py | Python | gpl-2.0 | 7,639 | [
"Brian"
] | 987f94c1536725068347657c1adc3bbd3c02c7539632c349049528c01cb0ba94 |
#! /usr/bin/env python
"""
Submit jobs to DIRAC WMS
Default JDL can be configured from session in the "JDL" option
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import six
import os.path
import sys
import re
import tempfile
from DIRAC import S_O... | DIRACGrid/COMDIRAC | src/COMDIRAC/Interfaces/scripts/dsub.py | Python | gpl-3.0 | 15,776 | [
"DIRAC"
] | bad113c6d5b0fb086a1f76884935c97b61095714888dc35dcfe457dcc3047b96 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Copyright (c) 2015 Kwangbom Choi, The Jackson Laboratory
This software was developed by Kwangbom "KB" Choi in Gary Churchill's Lab.
This is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Fre... | narayananr/emase | setup.py | Python | gpl-3.0 | 3,019 | [
"Biopython",
"pysam"
] | e6886db4238d4a94238124c917868a32f0b888d883179593b7976889d7aae71a |
#!/usr/bin/env python
# encoding: utf-8 -*-
import numpy
import unittest
import os
from rmgpy.cantherm.molepro import MoleProLog
import rmgpy.constants as constants
################################################################################
class MoleProTest(unittest.TestCase):
"""
Contains unit tests ... | KEHANG/RMG-Py | rmgpy/cantherm/moleproTest.py | Python | mit | 1,631 | [
"ChemPy",
"Gaussian"
] | 8529d1171a5cf3efc4287fee1d3725649df3af1d484729981b66a4dca362840e |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class CandleBenchmarks(Package):
"""ECP-CANDLE Benchmarks"""
homepage = "https://github.com... | iulian787/spack | var/spack/repos/builtin/packages/candle-benchmarks/package.py | Python | lgpl-2.1 | 1,543 | [
"MDAnalysis"
] | 96af2130bb149056b6795dc746638737715bf8efa7b2d96c06bd4be971adc36a |
# -*- coding: utf-8 -*-
from __future__ import print_function, division, absolute_import
from pykit.ir import visit, combine, Op
from pykit.tests import *
class SampleVisitor(object):
def __init__(self):
self.recorded = []
def op_mul(self, op):
self.recorded.append(op.opcode)
class TestTrave... | ContinuumIO/pykit | pykit/ir/tests/test_traversal.py | Python | bsd-3-clause | 805 | [
"VisIt"
] | c41d4f3d32b869a9ec9af478de7f070924b48999af9a00b2654b706504e3223a |
# -*- coding: utf-8 -*-
#
# glif_cond_neuron.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Licens... | hakonsbm/nest-simulator | pynest/examples/glif_cond_neuron.py | Python | gpl-2.0 | 9,651 | [
"NEURON"
] | 9f323e0ed7dc38e58843e94858d2bfd59937b1ad805639ff07450df3a261ba6c |
# Copyright 2016 James Hensman, alexggmatthews
# Copyright 2017 Thomas Viehmann
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | t-vi/candlegp | candlegp/densities.py | Python | apache-2.0 | 3,015 | [
"Gaussian"
] | 3f9a41fc170a0b18fa0ad614073d0959831e023f6d199cc0156ac76731e318cc |
#!/usr/bin/env python
#
# SchoolTool - common information systems platform for school administration
# Copyright (c) 2003 Shuttleworth Foundation
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation... | mhnatiuk/phd_sociology_of_religion | scrapper/build/lxml/test.py | Python | gpl-2.0 | 21,171 | [
"VisIt"
] | 28882753a04569bb1e2e263a6f47ccbf3b579986d8ba3b292504c6a7a6d02d52 |
# -*- coding: utf-8 -*-
# Generated by Django 1.10.6 on 2017-03-10 04:31
from __future__ import unicode_literals
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
('coffee', '0003_auto_20170310_0431'),
]
operations = [
migrations.AlterField... | greg-ruane/coffee-catalog | src/coffee/migrations/0004_auto_20170310_0431.py | Python | mit | 805 | [
"ESPResSo"
] | df0b2b347bfa4873709dc6c49b66e1589f8f3dbd7f4211e09f5542eb3985c819 |
# print dictionary
import json
goo = {'name': 'honux', 'age': 25, 'favorite' : {'game': 'SF', 'movie': 'matrix', 'book': 'Galaxy hero'}}
print(goo)
print(json.dumps(goo, indent = 4, sort_keys = True))
| honux77/practice | python/print_dict.py | Python | mit | 206 | [
"Galaxy"
] | d224424638bf710b7098fe01078c6a60d2fb70e03e99080d39e22d6c816f51da |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2016, Brian Coca <bcoca@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | chrismeyersfsu/ansible | lib/ansible/modules/system/systemd.py | Python | gpl-3.0 | 15,875 | [
"Brian"
] | 37017f488611970037d4245137321d3087c8421d3fabac38a6d038dfcfd900d4 |
from gpaw.transport.analysor import Transport_Plotter
import numpy as np
from pylab import *
import sys
from ase.data import chemical_symbols
fd=0
bias_steps = sys.argv[1]
orbital_type = None
plotter = Transport_Plotter(fd)
plotter.plot_setup()
plotter.read_overhead()
legends = []
flags = ['b-o', 'r-o', 'g-o' ,'c-o'... | qsnake/gpaw | doc/documentation/transport/transport_analysis_scripts/charge.py | Python | gpl-3.0 | 2,872 | [
"ASE",
"GPAW"
] | 8104792a21210cdfa10e083927a855ea0a241e772137e8e9f7f004b32a47ace3 |
# Maked by Mr. Have fun! Version 0.2
# Shadow Weapon Coupons contributed by BiTi for the Official L2J Datapack Project
# Visit http://forum.l2jdp.com for more details
import sys
from com.l2scoria.gameserver.model.quest import State
from com.l2scoria.gameserver.model.quest import QuestState
from com.l2scoria.gameserver.... | zenn1989/scoria-interlude | L2Jscoria-Game/data/scripts/quests/414_PathToOrcRaider/__init__.py | Python | gpl-3.0 | 6,558 | [
"VisIt"
] | d5cb423a177b8ea3590b2698b83dd9a57deed3c6e1f82fb3cafc4d707d427148 |
# Ask vnc text spoke
#
# Copyright (C) 2013 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use,
# modify, copy, or redistribute it subject to the terms and conditions of
# the GNU General Public License v.2, or (at your option) any later version.
# This program is distributed in the... | itoed/anaconda | pyanaconda/ui/tui/spokes/warnings.py | Python | gpl-2.0 | 2,450 | [
"Brian"
] | 75ef9b45a3979443e83e153b2b0d16240b0cc840fd66a6de53301c1e324a8cd6 |
import json
#!!! This giant block of imports should be something simpler, such as:
# from great_exepectations.helpers.expectation_creation import *
from great_expectations.execution_engine import (
PandasExecutionEngine,
SparkDFExecutionEngine,
SqlAlchemyExecutionEngine,
)
from great_expectations.expectati... | great-expectations/great_expectations | contrib/experimental/great_expectations_experimental/expectations/expect_column_values_to_be_ascii.py | Python | apache-2.0 | 12,458 | [
"VisIt"
] | f4981be93086a54f46d8952fe6393738e4397d9c22147c57308dc160ce7221c6 |
import numpy
from copy import copy
from orbkit.display import display
from orbkit.qcinfo import QCinfo, CIinfo
from orbkit.orbitals import MOClass
from orbkit.units import ev_to_ha
from .tools import molpro_mo_order_ci
from .psi4 import psi4_detci
from .tmol import tmol_escf, tmol_tddft
from .gamess import gamess_cis... | orbkit/orbkit | orbkit/detci/ci_read/high_level.py | Python | lgpl-3.0 | 4,067 | [
"GAMESS",
"Gaussian",
"Molpro",
"Psi4",
"TURBOMOLE"
] | 2574a5e6a3830d5ed981f539a457d3833b537776b5d6e6db620d27e8b4f116a7 |
'''Defines the common object used by the Grid Consistency Checker.
Created on May 19, 2013
@author: Cam Moore
'''
from collections import deque
from django.template.defaultfilters import slugify
class Error(object):
"""Represents Errors detected by GCC."""
def __init__(self, action, message):
"""Init... | yongwen/makahiki | makahiki/apps/managers/smartgrid_mgr/gcc_model.py | Python | mit | 11,951 | [
"Brian"
] | 0a682c27136ced7054a2e05b5816f0bbe5fa7774d462d2cfea89f669feb51951 |
import os
from scipy.io import netcdf
class Mask(object):
def __init__(self, base_dir=None, verbose=False):
self.base_dir = base_dir or os.getcwd()
self.verbose = verbose
def read_mask(self, region_name):
file_path = os.path.join(self.base_dir, 'mask_%s.nc' % region_name)
if... | paolap/cwsl-ctools | sdm/sdm/mask.py | Python | apache-2.0 | 512 | [
"NetCDF"
] | c50e5e52f335cc074e79d7104e1e05015b0e8de51d2f820a3b4673cb3ee1e9a2 |
""" A set of utilities used in the WMS services
Requires the Nordugrid ARC plugins. In particular : nordugrid-arc-python
"""
__RCSID__ = "$Id$"
import shutil
import os
from tempfile import mkdtemp
from DIRAC import S_OK, S_ERROR, gConfig
from DIRAC.Core.Utilities.Grid import executeGridCommand
from DIRAC.Core.U... | vmendez/DIRAC | WorkloadManagementSystem/Service/WMSUtilities.py | Python | gpl-3.0 | 2,909 | [
"DIRAC"
] | 4c8f18b7c18e2f65b6023d3eaad259174f1d5acee2b952e181a335c0ac79d92e |
"""
An implementation of a multilayer perceptron using matrix multiplies.
==============
Copyright Info
==============
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License,... | bdol/bdol-ml | neural_networks/matrix_mlp/neural_network.py | Python | lgpl-3.0 | 6,610 | [
"Brian"
] | 47e9ec135193599ba6a310403fd126c5931cc8afbfdb58c4fe321341431291fb |
# This code is part of Ansible, but is an independent component.
# This particular file snippet, and this file snippet only, is BSD licensed.
# Modules you write using this snippet, which is embedded dynamically by Ansible
# still belong to the author of the module, and may assign their own license
# to the complete wo... | donckers/ansible | lib/ansible/module_utils/basic.py | Python | gpl-3.0 | 82,815 | [
"VisIt"
] | 13288f3331b7194dfa2c1b2d4e4eac9b47e3b7dbe1d3b2c3d3bd7a242042a352 |
"""
Test dashboard search
"""
import json
import os
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.common.logout import LogoutPage
from common.test.acceptance.pages.common.utils... | teltek/edx-platform | common/test/acceptance/tests/lms/test_lms_dashboard_search.py | Python | agpl-3.0 | 7,382 | [
"VisIt"
] | c2d1e8c7ad58f6c1f9c899e0ef3b1e67455630415abef3e2695c27d003583c35 |
""" StorageManagerHandler is the implementation of the StorageManagementDB in the DISET framework """
__RCSID__ = "$Id$"
from types import IntType, DictType, ListType, StringType, LongType
from DIRAC import gLogger, S_OK
from DIRAC.Core.DISET.RequestHandler ... | Sbalbp/DIRAC | StorageManagementSystem/Service/StorageManagerHandler.py | Python | gpl-3.0 | 14,239 | [
"DIRAC"
] | 4915dccc2d8e8c8d58fb1e3fccc98bb621c14495a282ebdb659b73a9aabb2e98 |
# Copyright (C) 2012,2013,2016
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms... | kkreis/espressopp | src/tools/timers.py | Python | gpl-3.0 | 2,009 | [
"ESPResSo"
] | 06726ddd26dfd93c4ce9f26598aa0f704c0f0c39ddeea0968cd3cc08f552768e |
from __future__ import absolute_import
from parsimonious.grammar import Grammar
from parsimonious.nodes import NodeVisitor
from random import randint
grammar = Grammar("""
expression = operation / element
operation = ws element ws operator ws expression ws
element = parenthetical / number
... | ErinCall/ParserDemos | ndn/parsimonious.py | Python | mit | 1,665 | [
"VisIt"
] | f33ee52aee68e1f74b3351fffeb35be4ff30e2caa8d57dc48ce7c50efde3e556 |
""" Test class for SGEResourceUsage utility
"""
import pytest
from DIRAC import S_OK
# sut
from DIRAC.Resources.Computing.BatchSystems.TimeLeft.SGEResourceUsage import SGEResourceUsage
RESULT_FROM_SGE = """
job_number: 7448711
exec_file: job_scripts/7448711
submission_time: ... | yujikato/DIRAC | src/DIRAC/Resources/Computing/BatchSystems/TimeLeft/test/Test_SGEResourceUsage.py | Python | gpl-3.0 | 1,996 | [
"DIRAC"
] | ea1fc69991c65217ad18fadd5ca8e4de8358724d64d1d8a4ff0da3987ea9dd98 |
"""Scraper for North Carolina Supreme Court
CourtID: nc
Court Short Name: N.C.
Reviewer:
History:
2014-05-01: Created by Brian Carver
2014-08-04: Rewritten by Jon Andersen with complete backscraper
"""
import re
from datetime import date
from datetime import datetime
import traceback
from juriscraper.Abstract... | brianwc/juriscraper | opinions/united_states/state/nc.py | Python | bsd-2-clause | 6,743 | [
"Brian"
] | c831441cde519fa00c1bededf56bdea213bf8f054da02274162e9c7c84df976b |
# -*- coding: utf-8 -*-
# Copyright 2012 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless require... | catapult-project/catapult | third_party/gsutil/gslib/addlhelp/support.py | Python | bsd-3-clause | 4,597 | [
"VisIt"
] | 8660308e8e05c322c4fe454e7acb10576e8022bac26cb9e59e8183743fcd9277 |
'''
SYNBIOCHEM-DB (c) University of Manchester 2018
SYNBIOCHEM-DB is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
| synbiochem/SYNBIOCHEM-DB | synbiochem_db/data_tracking_sheet/__init__.py | Python | mit | 209 | [
"VisIt"
] | d861444fe4db3d5807221889ea43369bdd04529ec793a0ff8e51c4de163d9f8b |
#!/usr/bin/env python
# Author: Andrew Jewett (jewett.aij at g mail)
# http://www.chem.ucsb.edu/~sheagroup
# License: 3-clause BSD License (See LICENSE.TXT)
# Copyright (c) 2011, Regents of the University of California
# All rights reserved.
man_page_text = """
nbody_by_type.py reads a LAMMPS data file ... | crtrott/lammps | tools/moltemplate/src/nbody_by_type.py | Python | gpl-2.0 | 29,461 | [
"LAMMPS"
] | 5e4ae6be3f93c37f2353a18dd35208c834d1ca1b4e71a9aa958c21da76d0da87 |
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2007-2014, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Public version 2.1 or later. ... | Clyde-fare/cclib | test/testTDun.py | Python | lgpl-2.1 | 1,859 | [
"cclib"
] | 801d49ec4f9e608f9d373241b960fdd37fc0e880800bb33bdf061e8bf5eb791f |
import argparse
import logging
import os.path as op
import pandas as pd
from Bio import PDB
from tqdm import tqdm
import ssbio.utils
from ssbio.protein.structure.utils.structureio import StructureIO
log = logging.getLogger(__name__)
def get_msms_df(model, pdb_id, outfile=None, outdir=None, outext='_msms.df', force_... | SBRG/ssbio | ssbio/protein/structure/properties/msms.py | Python | mit | 4,656 | [
"Biopython"
] | 709fe1b8ef602d4840be3fe1abc52988aaa36c860335cee82c9cd017da51b367 |
#
# Brian C. Lane <bcl@redhat.com>
#
# Copyright 2012 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use, modify,
# copy, or redistribute it subject to the terms and conditions of the GNU
# General Public License v.2. This program is distributed in the hope that it
# will be useful,... | bcl/pykickstart | tests/commands/reboot.py | Python | gpl-2.0 | 4,241 | [
"Brian"
] | 33f334872ebed4b3e0171a60b4252f7e75c4072f131ec4602663aa4eb854be0e |
import pickle
import numpy as np
from ase.dft.kpoints import ibz_points, get_bandpath
from gpaw import GPAW
points = ibz_points['fcc']
G = points['Gamma']
X = points['X']
W = points['W']
K = points['K']
L = points['L']
calc = GPAW('Si-PBE.gpw',
txt=None,
parallel={'domain': 1},
fixde... | robwarm/gpaw-symm | doc/tutorials/pbe0/bs.py | Python | gpl-3.0 | 633 | [
"ASE",
"GPAW"
] | f4166fe0ba39f2763f202016a2a5205649fa6e3fcf31bc4be7be1f7392fe87d9 |
from __future__ import unicode_literals
from django.test import TestCase
from django.utils import six
from .models import (Building, Child, Device, Port, Item, Country, Connection,
ClientStatus, State, Client, SpecialClient, TUser, Person, Student,
Organizer, Class, Enrollment, Hen, Chick)
class SelectRelat... | denisenkom/django | tests/select_related_regress/tests.py | Python | bsd-3-clause | 8,137 | [
"Brian"
] | 8e77e81ef614eec2d511516e7769a0d4a9ecfc0925a9fd62535ff54dee6bc871 |
#!/usr/bin/env python
# call this like: % python test_matcher.py
#repodir = "/data/lsst/decam/redux/cp/cosmos/"
#visitid = 177341
#ccdnum = 15
import lsst.afw.image as afwImage
import lsst.afw.table as afwTable
import lsst.afw.geom as afwGeom
import lsst.daf.persistence as dafPersist
import lsst.meas.astrom as measA... | dnidever/lsst-tools | python/qascript.py | Python | mit | 14,469 | [
"VisIt"
] | a62f6bd341500c01fdd169d70b6cda31e67f8d6e9abfab2d45ef08ba61428b97 |
# Copyright (C) 2014
# Pierre de Buyl
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it ... | espressopp/espressopp | src/interaction/HarmonicTrap.py | Python | gpl-3.0 | 3,062 | [
"ESPResSo"
] | 09529894796e321f3aa47598515613b0eed4a38e353dfdb7e37111f70d0b1921 |
"""
Acceptance tests for Studio related to the textbooks.
"""
from common.test.acceptance.pages.lms.textbook_view import TextbookViewPage
from common.test.acceptance.pages.studio.textbook_upload import TextbookUploadPage
from common.test.acceptance.tests.helpers import disable_animations
from common.test.acceptance.tes... | philanthropy-u/edx-platform | common/test/acceptance/tests/studio/test_studio_textbooks.py | Python | agpl-3.0 | 7,155 | [
"VisIt"
] | 753d29f2c09dbcfbc34962cf910c062a49aa1c393477f74c0586615f6c6dfd81 |
from ase import Atoms
from gpaw import GPAW
a = 2.87
m = 2.2
bulk = Atoms('Fe2',
positions=[(0, 0, 0),
(a/2, a/2, a/2)],
magmoms=[m, m],
cell=(a, a, a),
pbc=True)
calc = GPAW(kpts=(6, 6, 6),
h=0.20,
nbands=18,
... | qsnake/gpaw | doc/exercises/iron/ferro.py | Python | gpl-3.0 | 457 | [
"ASE",
"GPAW"
] | 8b066d62306950138ac8d670e0fa77c3fe808a0776889feaabe51419de0f8708 |
# -*- coding: utf-8 -*-
# Copyright 2012 splinter authors. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
from __future__ import with_statement
import time
import re
from contextlib import contextmanager
from selenium.common.exceptions impor... | GbalsaC/bitnamiP | venv/lib/python2.7/site-packages/splinter/driver/webdriver/__init__.py | Python | agpl-3.0 | 15,540 | [
"VisIt"
] | 47dc9474f0d52251b1134c0d372aff23d423837e8fe7badd7d0576fac01013e6 |
#!/usr/bin/python
adjectives = ("autumn", "hidden", "bitter", "misty", "silent", "empty", "dry",
"dark", "summer", "icy", "delicate", "quiet", "white", "cool",
"spring", "winter", "patient", "twilight", "dawn", "crimson",
"wispy", "weathered", "blue", "billowing", "broken", "c... | MoshiBin/pykunator | pykunator/words.py | Python | mit | 1,472 | [
"Firefly"
] | 85ec9da074e1085ba626cb8d5d41a2d3827817148bb969a2f8b1603b8cf3b728 |
from distutils.core import setup
setup(
name='Pi-Pin-Manager',
version='3.1.0',
author='Brian Hines',
author_email='brian@projectweekend.net',
packages=['pi_pin_manager'],
url='http://projectweekend.github.io/Pi-Pin-Manager/',
license='LICENSE.txt',
description='Setup Raspberry Pi GPIO ... | projectweekend/Pi-Pin-Manager | setup.py | Python | mit | 508 | [
"Brian"
] | ba2fdd0f127a3187758ce01f7213ae4a4a074c4b9003625d1aa42fd0e54b8a0f |
from __future__ import division
import numpy as np
import scipy as sp
from scipy import sparse
import pandas as pd
from scipy.stats import gamma
import matplotlib.pyplot as plt
from six.moves import range, StringIO, cPickle
class HRFModel(object):
"""Abstract class definition for HRF Models."""
def __init__(... | mwaskom/moss | moss/glm.py | Python | bsd-3-clause | 29,735 | [
"Gaussian"
] | 2d11a967fdad78e397de4c9dbb146f6488ffd8d59aa9501a484c819b826af7aa |
# Default Django settings. Override these with settings in the module
# pointed-to by the DJANGO_SETTINGS_MODULE environment variable.
# This is defined here as a do-nothing function because we can't import
# django.utils.translation -- that module depends on the settings.
gettext_noop = lambda s: s
#################... | ychen820/microblog | y/google-cloud-sdk/platform/google_appengine/lib/django-1.4/django/conf/global_settings.py | Python | bsd-3-clause | 22,284 | [
"VisIt"
] | 61f25a089a2d21598a1b8df9a956e8980e95e64603d6f06ca72036add351d1a9 |
# -*- coding: utf-8 -*-
"""
pygments.lexers.compiled
~~~~~~~~~~~~~~~~~~~~~~~~
Lexers for compiled languages.
:copyright: Copyright 2006-2012 by the Pygments team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
import re
from string import Template
from pygments.lexer import Lexer, Rege... | isnowfy/pydown | pygments/lexers/compiled.py | Python | mit | 130,406 | [
"ASE"
] | 3bcafcb80f0421072ae1e1102a55bf6978010080c055357a546064627ef5122f |
"""
View for Courseware Index
"""
# pylint: disable=attribute-defined-outside-init
from datetime import datetime
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.contrib.auth.models import User
from django.core.context_processors import csrf
from django.core.urlreso... | 10clouds/edx-platform | lms/djangoapps/courseware/views/index.py | Python | agpl-3.0 | 21,763 | [
"VisIt"
] | b2ae4f6f7e89786a8bae578754bc7df28a15e7b25c2f5c6fd4a75736c2c9986b |
"""
Test functions for models.GLM
"""
from statsmodels.compat import range
import os
import numpy as np
from numpy.testing import (assert_almost_equal, assert_equal, assert_raises,
assert_allclose, assert_, assert_array_less)
from scipy import stats
import statsmodels.api as sm
from statsmo... | rgommers/statsmodels | statsmodels/genmod/tests/test_glm.py | Python | bsd-3-clause | 28,302 | [
"Gaussian"
] | e622f7a8df2045e4dd4dfd90ee0946a04d1b1d01f76da02cea1047f6b83ba962 |
"""Mean shift clustering algorithm.
Mean shift clustering aims to discover *blobs* in a smooth density of
samples. It is a centroid based algorithm, which works by updating candidates
for centroids to be the mean of the points within a given region. These
candidates are then filtered in a post-processing stage to elim... | mira67/TakeoutDataAnalysis | python/mean_shift_n.py | Python | gpl-3.0 | 19,555 | [
"Gaussian"
] | c4d4aa01e33eb4b992b3f1dbc133847cec2a7f68f7605a160fd36bcf751c364b |
#!/usr/bin/env python2
desc="""Fetch proteomes of taxa from given group form metaPhOrs.
"""
epilog="""Author: l.p.pryszcz+git@gmail.com
Mizerow, 17/07/2014
"""
import argparse, os, sys
import numpy as np
from datetime import datetime
from Bio import SeqIO
def blastout2profile(out, query, blastfiles, evalue, query_ov... | lpryszcz/bin | blastout2profile.py | Python | gpl-3.0 | 3,544 | [
"BLAST"
] | bb063f6e0c98f58d136238d64f6aa30cf4ed95ed8c0e6583ff5ec4c79e6b195e |
import netCDF4
import logging
from datetime import datetime
def initialize(ncfile, dimensions, variables=None, attributes=None, crs=None):
'''Initialize netCDF4 file
Creates an empty netCDF4 file with dimensions and variable
containers according to a set of dictionaries for the dimensions,
variables,... | openearth/windsurf | windsurf/netcdf.py | Python | gpl-2.0 | 11,659 | [
"NetCDF"
] | 7a6ae06cafbffd51e6b7876eea50c776d3b3026992c707a421bec40999a11421 |
import tensorflow as tf
from tensorflow.python.framework import ops
import numpy as np
import glob
import argparse
import logging
import os
import sys
import config as cfg
import re
from scipy.misc import imresize, toimage
from PIL import Image
from scipy import signal, ndimage
from blocks import relu_block, res_block... | davidzheng814/superres | model.py | Python | mit | 24,239 | [
"Gaussian"
] | 81b0e4f968f2acb4ef425435ee306e6d022f12fa41925c86d6a9b3cfe6db5ea0 |
#
# Copyright 2009-2017 Red Hat, Inc.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed ... | EdDev/vdsm | lib/vdsm/storage/misc.py | Python | gpl-2.0 | 19,234 | [
"VisIt"
] | 4f50ba530d1dc4eff642d5fbfb4a6ef71a28eb89693955c920d747033acc4506 |
#!/usr/bin/env python
########################################
#Globale Karte fuer tests
# from Rabea Amther
########################################
# http://gfesuite.noaa.gov/developer/netCDFPythonInterface.html
import math
import numpy as np
import pylab as pl
import Scientific.IO.NetCDF as IO
import matplotlib as... | CopyChat/Plotting | GCM_changes/climatechange.tas.py | Python | gpl-3.0 | 6,798 | [
"NetCDF"
] | 3f21be30312a4b5ea18d57a3831638974c97b0543d81aa9bed1d82f72b02833d |
import numpy as np
import qpimage
def test_offset_mean_simple():
size = 200
bg = 2.5
rsobj = np.random.RandomState(47)
data = rsobj.normal(loc=bg, scale=.1, size=(size, size))
assert np.allclose(np.mean(data), 2.5003227280152887)
qpi = qpimage.QPImage(data=data, which_data="phase", h5dtype="f... | RI-imaging/qpimage | tests/test_bg_estimate_offset.py | Python | mit | 1,900 | [
"Gaussian"
] | 66d23ddedeef96d1fdb626a88da26c56d0420b8a084b6978291808c0152c8447 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2008 Gary Burton
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either v... | dermoth/gramps | gramps/gen/plug/menu/_text.py | Python | gpl-2.0 | 1,775 | [
"Brian"
] | c7a83a4803ce4b8c035ba418714f52d7bf08edad197f620113bafa5820efabbc |
'''
Base class from which PyNoddy experiments should inherit.
Much basic functionality (random perturbation, plotting etc. is defined here).
Thought: perhaps drawing functions etc. should be moved into NoddyOutput class?
@author: flohorovicic, samthiele
'''
import os
import numpy as np
from pynoddy.history import N... | jesserobertson/pynoddy | pynoddy/experiment/__init__.py | Python | gpl-2.0 | 21,344 | [
"ParaView",
"VTK"
] | 659d16c479d605ea4a7735f3d0fccd2ecf9ff600944bd5d7b88848f8c7fd9b9c |
# -*- Mode: Python; coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2007 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Sof... | andrebellafronte/stoq | plugins/ecf/ecfui.py | Python | gpl-2.0 | 27,520 | [
"VisIt"
] | a71c16cda0df11c6223e1d66388c2ccc5e912d3ff885fb9b7df5d57a6ace7fc7 |
# -*- coding: utf-8 -*-
import os, datetime
from django.db import models
from django.contrib.auth.models import User
from django.utils import timezone
from django.core.urlresolvers import reverse
from django.conf import settings
from irpmemr.models import CommonModel
from irpmemr.const import COOKING_FACILITIES, TOIL... | aazhbd/medical_info01 | patient/models.py | Python | bsd-3-clause | 17,083 | [
"VisIt"
] | f53d39b187c22d49832165a3dfadc8a7add3e3167b0755cf836a631df17577e4 |
# -*- coding: utf-8 -*-
# Copyright (c) 2015-2018, Exa Analytics Development Team
# Distributed under the terms of the Apache License 2.0
"""
Interface to `cclib`_
#######################
.. _cclib: https://cclib.github.io/
"""
from exa.util.units import Length, Energy
from exatomic.algorithms.basis import lmap
from e... | avmarchenko/exatomic | exatomic/interfaces/cclib.py | Python | apache-2.0 | 4,776 | [
"Gaussian",
"cclib"
] | 216b698037f065b18fb28cd3e2795ae14638a1d77e3c76f6765451c73620e0ca |
# Principal Component Analysis Code :
from numpy import mean,cov,double,cumsum,dot,linalg,array,rank,size,flipud
from pylab import *
import numpy as np
import matplotlib.pyplot as pp
#from enthought.mayavi import mlab
import scipy.ndimage as ni
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import ro... | tapomayukh/projects_in_python | classification/Classification_with_kNN/Single_Contact_Classification/Final/results/4-categories/24/test10_cross_validate_categories_24_1200ms.py | Python | mit | 4,364 | [
"Mayavi"
] | 00e804868b9c2d061a6068d8a12e21a09549d30a65e1f4df640d070e8171ea7e |
# sql/util.py
# Copyright (C) 2005-2016 the SQLAlchemy authors and contributors
# <see AUTHORS file>
#
# This module is part of SQLAlchemy and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""High level utilities which build upon other modules here.
"""
from .. import exc, u... | Microvellum/Fluid-Designer | win64-vc/2.78/python/lib/site-packages/sqlalchemy/sql/util.py | Python | gpl-3.0 | 20,382 | [
"VisIt"
] | ec0b0eb32848ab67922cc5adc2fa9f4cb73631d0a8b46cc4290285137c24e6c9 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | psci2195/espresso-ffans | testsuite/python/lb_electrohydrodynamics.py | Python | gpl-3.0 | 2,509 | [
"ESPResSo"
] | cbd30aa9e76092d913dddfca197ad8761eef10a0f00ad1e31d4e51cee4301730 |
import bs
import random
import math
def bsGetAPIVersion():
return 4
def bsGetGames():
return [KillZoneGame]
def bsGetLevels():
return [bs.Level('Kill Zone',displayName='${GAME}',gameType=KillZoneGame,settings={},previewTexName='doomShroomPreview')]
class KillZoneGame(bs.TeamGameActivity):
@classme... | Mrmaxmeier/BombSquad-Community-Mod-Manager | mods/bsKillZone.py | Python | unlicense | 12,614 | [
"BLAST"
] | b0bf48d9240e5c46ef53d4bd6070e46cfb3c8e2bfe291a8e06a274029bf995f7 |
import datetime
from django.http import HttpResponse
import logging
from natsort import natsorted
import pandas as pd
from PyPDF2 import PdfFileReader, PdfFileMerger
from pyper import *
import json
from database.models import ko_entry
import functions
LOG_FILENAME = 'error_log.txt'
pd.set_option('display.max_colwid... | manterd/myPhyloDB | functions/analysis/gage_graphs.py | Python | gpl-3.0 | 19,411 | [
"Bioconductor"
] | 5b94cf652b46f7ff02e8ea2853b69186aed48582220a4e628ea671d64625dbb2 |
"""This demo program uses of the interface to SNES solver for variational inequalities
to solve a contact mechanics problems in FEnics.
The example considers a heavy hyperelastic circle in a box of the same size"""
# Copyright (C) 2012 Corrado Maurini
#
# This file is part of DOLFIN.
#
# DOLFIN is free software: you... | MiroK/DolfinSurface | demo/undocumented/contact-vi-snes/python/demo_contact-vi-snes.py | Python | gpl-3.0 | 3,831 | [
"VTK"
] | 57f0fbeac9d23888a9c29aff5652df97aa87882012f817ec075a28686b382712 |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | skosukhin/spack | var/spack/repos/builtin/packages/plumed/package.py | Python | lgpl-2.1 | 7,199 | [
"Amber",
"ESPResSo"
] | a0ba1f293afab5e8ba2e3cd12d173c66ba267f7cb165d680b0ef83795ea2a432 |
#! /usr/bin/env python
"""
Script to pre-average data using a sliding Gaussian kernel in time
"""
import argparse
from argparse import RawTextHelpFormatter
import numpy as np
import glob
import sys
import os
import itertools
import pickle
from scipy.ndimage.filters import gaussian_filter1d as gfilter
import casacore.ta... | revoltek/factor | factor/scripts/pre_average_time.py | Python | gpl-2.0 | 17,177 | [
"Gaussian"
] | 1e995622422ca31b7a06490334817d3d6d2b6dfcda63d181ca73efbf27a5103c |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
import html
... | harterj/moose | python/MooseDocs/tree/html.py | Python | lgpl-2.1 | 4,743 | [
"MOOSE"
] | 83bf7fcac7e788bbace767efc8210525ce42cf8a6400fd5e8349cb1b519b414b |
'''
Example of a spike receptor (only receives spikes)
In this example spikes are received and processed creating a raster plot at the end of the simulation.
'''
from brian import *
import numpy
from brian_multiprocess_udp import BrianConnectUDP
# The main function with the NeuronGroup(s) and Synapse(s) must be na... | ricardodeazambuja/BrianConnectUDP | examples/OutputNeuronGroup_multiple_outputs_1.py | Python | cc0-1.0 | 2,856 | [
"Brian",
"NEURON"
] | 80ad434d30e126e2cffc30c8d3ee2cae7e32b9b6d6172cbf0f10a60b8618f5df |
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