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#
# cmdline.py
#
# Copyright (C) 2016 Red Hat, Inc.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program ... | bcl/lorax | src/pylorax/cmdline.py | Python | gpl-2.0 | 19,823 | [
"Brian"
] | d678b5e6245d8ee2cf012ece786539eb9ed93fc04667b887adcc56e7705fbf44 |
"""Base URL settings for the Study Buffalo website."""
from django.conf import settings
from django.urls import include, path
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
from django.contrib.s... | studybuffalo/studybuffalo | config/urls.py | Python | gpl-3.0 | 3,687 | [
"VisIt"
] | f1fd392a58e0409d778ebb6fb3baa3f111b63b72a4e137b1786e853e1e308ea2 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | jensreeder/scikit-bio | skbio/io/tests/test_base.py | Python | bsd-3-clause | 14,509 | [
"scikit-bio"
] | eedae62aeb624b20965c1e7849b206c08540ab32f616de777e8a5aa1394d55b3 |
#! /usr/bin/env python3
# -*- coding: utf-8 -*-
import argparse
import os
import numpy as np
import matplotlib.pyplot as plt
"""
Performs a composite analysis of ekf log analysis meta data for all .ulg.csv files in the specified directory
Generates and saves histogram plots for the meta data in population_data.pdf
Gen... | krbeverx/Firmware | Tools/ecl_ekf/batch_process_metadata_ekf.py | Python | bsd-3-clause | 31,696 | [
"Gaussian"
] | 08f13c1ef42be8c7bb7ed6dc9e1c1162eb48f79622d2aad36a9e66cf59f8294c |
# -*- coding: ISO-8859-1 -*-
#
# Copyright (C) 2011 Michael Schindler <m-schindler@users.sourceforge.net>
#
# This file is part of PyX (http://pyx.sourceforge.net/).
#
# PyX is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software... | mjg/PyX | pyx/metapost/mp_path.py | Python | gpl-2.0 | 18,083 | [
"Gaussian"
] | 4d809e4d839b9a2948b22f5028ef4ab8610b51cce440624c2468afc24c78c53b |
#!/usr/bin/env python
#import argparse
#from glob import glob
from os.path import join as jp
from os.path import abspath
import os
import sys
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('-s', "--variants", help="List of joint (raw) variant (.vcf) files", required=True)
parser.add_argument('... | shendri4/devil_wgs | GATK_variantFilters.py | Python | apache-2.0 | 5,154 | [
"BWA"
] | eea007a54fb81c8b4e3875780e01690d47fda5dd6ddd71bd9b6e374ee06aea74 |
import unittest
from hamcrest import *
from nose.tools import nottest
from test.features import BrowserTest
class test_create_pages(BrowserTest):
def test_about_page(self):
self.browser.visit("http://0.0.0.0:8000/high-volume-services/"
"by-transactions-per-year/descending")
... | gds-attic/transactions-explorer | test/features/test_create_pages.py | Python | mit | 1,356 | [
"VisIt"
] | 5182ce1759d7f919cbfac306e3a9020a3aec1a5036699d62d0a1d96c6296224e |
from pubnub import Pubnub
from functools import wraps
from .base_request import BaseRequest
from .models.config import Config
from .models.device import Device
# TODO: https://github.com/resin-io/resin-sdk/pull/277/files
class Logs(object):
"""
This class implements functions that allow processing logs from ... | nghiant2710/resin-sdk-python | resin/logs.py | Python | mit | 3,779 | [
"VisIt"
] | a78e915761c883bc14f64a71ed7e129242b5472abe9ff11af9cde816e50e1c82 |
"""
The classes in this module enable random access to a variety of file formats
(BAM, bigWig, bigBed, BED) using a uniform syntax, and allow you to compute
coverage across many features in parallel or just a single feature.
Using classes in the :mod:`metaseq.integration` and :mod:`metaseq.minibrowser`
modules, you ca... | daler/metaseq | metaseq/_genomic_signal.py | Python | mit | 9,644 | [
"pysam"
] | aeb3da6ce9f3ce6943e526b2ac56c6a86169f641e72927f60c62d9219fff30ff |
# Copyright 2001 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
Maximum Entropy code.
Uses Improved Iterative Scaling:
XXX ref
# XXX need to define term... | bryback/quickseq | genescript/Bio/MaxEntropy.py | Python | mit | 10,899 | [
"Biopython"
] | a32065aacf50b17e9d0c91e22321a1f87df4432852d11627741c4b7f871933cb |
# -*- coding: utf-8 -*-
r"""
===================================
Background information on filtering
===================================
Here we give some background information on filtering in general,
and how it is done in MNE-Python in particular.
Recommended reading for practical applications of digital
filter des... | mne-tools/mne-tools.github.io | 0.16/_downloads/plot_background_filtering.py | Python | bsd-3-clause | 44,325 | [
"Gaussian"
] | 2ea1249aef9b0a96b880a047c90bc8a3557f26fbf1ef0e51e3015390c0a41238 |
# Copyright 2010-2017, The University of Melbourne
# Copyright 2010-2017, Brian May
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | brianmay/karaage | karaage/tests/machines/test_forms.py | Python | gpl-3.0 | 3,523 | [
"Brian"
] | 01db04a0b58eeec6294390c6bbccd0b5ca098c8ee13abbbaeb9a80c484b3b2f3 |
import sys, os
sys.path.insert(1, os.path.join("..",".."))
import h2o
from tests import pyunit_utils
def offsets_and_distributions():
# cars
cars = h2o.upload_file(pyunit_utils.locate("smalldata/junit/cars_20mpg.csv"))
cars = cars[cars["economy_20mpg"].isna() == 0]
cars["economy_20mpg"] = cars["economy_20mpg... | pchmieli/h2o-3 | h2o-py/tests/testdir_algos/deeplearning/pyunit_offsets_and_distributions_deeplearning.py | Python | apache-2.0 | 1,783 | [
"Gaussian"
] | cd5b9b9119b87cc148103755b862488aba7928057e5dbeb741e1d61c8357bc5e |
#. Common crypto state and structure
import copy
from mailpile.i18n import gettext as _
from mailpile.i18n import ngettext as _n
class KeyLookupError(ValueError):
def __init__(self, message, missing):
ValueError.__init__(self, message)
self.missing = missing
# Crypto state is a strange beast, i... | laborautonomo/Mailpile | mailpile/crypto/state.py | Python | apache-2.0 | 4,794 | [
"exciting"
] | 8477739f20842c166416a9d281f88b4959796faba9adda8e802b4526be25087f |
# -*- coding: utf-8 -*-
#
# connect_test_base.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Licen... | sdiazpier/nest-simulator | testsuite/pytests/connect_test_base.py | Python | gpl-2.0 | 21,066 | [
"NEURON"
] | fb9059a5967e03eb26220fcc57837bedbdec3f85f6bebca364e2352d8cbccf96 |
from mpp.models import SQLTestCase
class test_lasj(SQLTestCase):
"""
@optimizer_mode on
@tags ORCA
Test Left Anti Semi Join
"""
sql_dir = 'sql/'
ans_dir = 'expected/'
out_dir = 'output/'
| lintzc/gpdb | src/test/tinc/tincrepo/query/joins/lasj/test_lasj.py | Python | apache-2.0 | 220 | [
"ORCA"
] | bcd2eba3d2b9cae49dd291850cca59e17a5321517fb9eacfe8ad2d4f850d5384 |
# Copyright (C) 2018 Henrique Pereira Coutada Miranda, Alejandro Molina Sanchez
# All rights reserved.
#
# This file is part of yambopy
#
import os
import re
from math import sqrt
__all__ = ['PhIn']
class PhIn(object):
"""
A class to generate an manipulate quantum espresso input files for ph.x
"""
def... | henriquemiranda/yambo-py | qepy/ph.py | Python | bsd-3-clause | 2,535 | [
"Quantum ESPRESSO"
] | 302a949e6b36cf9472599e06bc0a8d5319b3648ae64320c90271ed027b521e83 |
"""
Params Module
=============
Calculate the governing scales and determine the appropriate simulation model
This module calculates the governing non-dimensional parameters defined in
papers by Socolofsky and Adams (2002, 2005) and Socolofsky et al. (2011) and
uses this information to recommend the appropriate simu... | socolofs/tamoc | tamoc/params.py | Python | mit | 13,233 | [
"NetCDF"
] | 3db28ceb181fb6ba676b34fc5fea03a1e5577f5e415007f2bd432b7af454aed5 |
# Copyright 2014, 2015 The ODL development group
#
# This file is part of ODL.
#
# ODL is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | bgris/ODL_bgris | odl/test/trafos/fourier_test.py | Python | gpl-3.0 | 31,209 | [
"Gaussian"
] | d2cd29b71d12716681cae6ff6fa5f6c6b6556a406b9a10cb88338df3b0e1940b |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jturney/psi4 | psi4/driver/p4util/text.py | Python | lgpl-3.0 | 8,400 | [
"Psi4"
] | 6dbc67fe79f7c3b4264de751039b688680c43d1899db648e39328b46f061a60b |
__author__ = 'amarch'
# -*- coding: utf-8 -*-
from utils import strutils as infoutils
import itertools
from scipy.integrate import *
from RotationCurve import *
from Galaxy import *
from utils import strutils as infoutils
import itertools
import copy
class RotationCurveHandler():
def __init__(self, galaxyname... | Amarchuk/2FInstability | core/RotationCurveHandler.py | Python | gpl-3.0 | 6,574 | [
"Galaxy"
] | 2f54d8395e569b36fda94171ff89f3a55211213ce10ffc9e08956e6548ab2950 |
# -*- coding: utf-8 -*-
import numpy as np
from ..state import State
from .move import Move
__all__ = ["MHMove"]
class MHMove(Move):
r"""A general Metropolis-Hastings proposal
Concrete implementations can be made by providing a ``proposal_function``
argument that implements the proposal as described b... | joezuntz/emcee | src/emcee/moves/mh.py | Python | mit | 2,393 | [
"Gaussian"
] | 5fec6c38aac5b84b94a7ad00acd16afb449ca28aaabfc43fe27f121cd1e1e6b8 |
#!/usr/bin/env python3
# vim:ts=4:sw=4:ai:et:si:sts=4
# Based on a script
# (c) 2006 Hermann Vosseler <Ichthyostega@web.de>
# This code is free software and may be used under the
# terms and conditions of the GPL version 2
# Modifications and rewrite
# (c) 2017 Gavin Hurlbut <gjhurlbu@gmail.com>
import sys
import o... | Beirdo/video-render-flow-scripts | proxychange.py | Python | mit | 7,417 | [
"VisIt"
] | ac2f116b975f60de19c6ed1fd3a91f06219a236154c619c6cb44d243f01e87a3 |
#!/usr/bin/python
# -*- coding: iso-8859-1 -*-
# LysKOM Protocol A version 10 client interface for Python
# $Id: komwalk.py,v 1.2 2009/02/03 07:22:14 forsberg Exp $
# (C) 1999 Kent Engström. Released under GPL.
import kom
# The Class
class Walker:
# The connection has to be a subclass of CachedConnection
def... | kent-engstrom/python-lyskom | komwalk.py | Python | gpl-2.0 | 2,052 | [
"VisIt"
] | bd51127b4cfcdc0ae3c1ce3f264dbfd399f7384adee9302dfe637d35e9eb27b8 |
#!/usr/bin/env python3
# import needed classes, random to scramble the dices, time to add waiting time when the dice's are rolled.
import random
import time
# Created Array of dice's number equals one side of the dice. So 1-6 is the first dice, 7-12 second and so on.
dices = {1: "Ladders", 2: "Submarine", 3: "Questio... | Rinik/story-teller | story-teller.py | Python | mit | 2,943 | [
"Octopus"
] | 5d04b9c7edd28fa494a078ac03f682a4add39a3bc43df4decf97fa14067dd805 |
# (c) Crown Owned Copyright, 2016. Dstl.
import os
import unittest
from splinter import Browser
class Test404Page (unittest.TestCase):
def setUp(self):
self.browser = Browser('phantomjs')
def test_404_page_appears(self):
url = "http://%s/nonsense-doesnt-exist" % os.environ['LIGHTHOUSE_HOST'... | dstl/lighthouse | acceptancetests/tests/acc_test_404.py | Python | mit | 736 | [
"VisIt"
] | 0b959a35c3a3f15a58d0ec9a44b3c439911cc3c11e74c6e9fcf4c2fa91017d03 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import rdkit
from rdkit.Chem import AllChem
from rdkit import DataStructs
__license__ = "X11"
METADATA = {
"id": "method_rdkit_fcfc8_tanimoto",
"representation": "fcfc8",
"similarity": "tanimoto"
}
def _compute_fingerprint(molecule):
return AllChem.GetM... | skodapetr/lbvs-environment | methods/fcfc/fcfc8_tanimoto.py | Python | mit | 1,383 | [
"RDKit"
] | ad85acfb51376c3a3b02449076cd52d386fb8da663420b5b9ef7536a073b1a4f |
#!/usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-proxy-init.py
# Author : Adrian Casajus
########################################################################
__RCSID__ = "$Id$"
import sys
import DIRAC
from DIRAC.Core.Base import Script
c... | andresailer/DIRAC | FrameworkSystem/scripts/dirac-myproxy-upload.py | Python | gpl-3.0 | 1,541 | [
"DIRAC"
] | e0597fec3737388c94b6c1851d9f6e5cd18c6adf8f49c280ce79dc4155ff2fbe |
import sys
import pygame
from pygame.locals import *
from thecure import set_engine
from thecure.levels import get_levels
from thecure.resources import get_font_filename
from thecure.signals import Signal
from thecure.sprites import Player
from thecure.timer import Timer
from thecure.ui import GameUI
class Camera(o... | chipx86/the-cure | thecure/engine.py | Python | mit | 6,783 | [
"CRYSTAL"
] | 31e358f9d26dc09a48553a8854dab7b3d09b65adf362527f24eee231093b078f |
#!/usr/bin/env python2.7
#Ryan G. Coleman, Brian K. Shoichet Lab
#implements atom color table, 2 parts, 1 part is color to int mapping
# other part is rules for mapping sybyl atoms to colors
# defaults are encoded and writable so users can edit them
import string, sys
import operator
class ColorTable(object):
'''i... | ryancoleman/mol2db2 | atom_color_table.py | Python | gpl-2.0 | 5,597 | [
"Brian"
] | a1fc42810d39a11959b26aab22eaabc61253a4d7d430c5010249e526a0e960c2 |
import requests
from sqlalchemy.orm.exc import NoResultFound
from imapclient import IMAPClient
from inbox.models import Namespace
from inbox.models.backends.gmail import GmailAccount
from inbox.models.backends.gmail import GmailAuthCredentials
from inbox.models.backends.gmail import g_token_manager
from inbox.config i... | wakermahmud/sync-engine | inbox/auth/gmail.py | Python | agpl-3.0 | 8,441 | [
"VisIt"
] | 8e979341803a5a858c8b496bac50f713d2f84eb090d9fd2689190d2d0911fa75 |
# Copyright 2013-2017, Brian May
#
# This file is part of python-alogger.
#
# python-alogger is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ver... | Karaage-Cluster/python-alogger | alogger/tests/test_torque.py | Python | gpl-3.0 | 1,660 | [
"Brian"
] | f02839fbdecce79831f1ada44f9888271b885cc4a2286294d34d73a0f144dbc4 |
#!/usr/bin/env python
# coding: utf-8
from pathlib import Path
import numpy as np
from PTMCMCSampler import PTMCMCSampler
# ## Define the likelihood and posterior
#
# Functions must read in parameter vector and output log-likelihood or log-prior.
# Usually easiest to use a class if you need to store some other dat... | jellis18/PTMCMCSampler | examples/simple.py | Python | mit | 2,798 | [
"Gaussian"
] | fc753ebe0edae7e857d8896c38b140a4e6d2136a49c031df603418ba16d06831 |
"""Tornado handlers for the live notebook view.
Authors:
* Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed... | WillisXChen/django-oscar | oscar/lib/python2.7/site-packages/IPython/html/notebook/handlers.py | Python | bsd-3-clause | 3,360 | [
"Brian"
] | 9bdd527437b85785dc9cdafdbe1070f56aa66e12dd8f10281f270ed7e512236a |
#######################################################################################
# Python-code: SAINT pre-processing from MaxQuant "Samples Report" output
# Author: Brent Kuenzi
#######################################################################################
# This program reads in a raw MaxQuant "Sam... | bornea/APOSTL | SAINT_preprocessing/toolshed_version/SAINT_preprocessing_mq_pep.py | Python | gpl-2.0 | 10,604 | [
"Galaxy"
] | 1f4e2dbce99366ffce28f929b1ca6db64e1add27ebdef93cdfde6f3e5311a19e |
'''
Created on 22.04.2017
@author: Mr. Jones
'''
class ReplacementVisitor():
def visit(self, node, target, replacement):
method = 'visit_%s' % node.__class__.__name__
return getattr(self, method, self.generic_visit)(node,target,replacement)
def generic_visit(self, node,target,replace... | mrj0n3s/jimplify | Jimplify/jimplify/visitors/replacementvisitor.py | Python | mit | 13,076 | [
"VisIt"
] | 2ab25aeb3b818dde7d7ca9ba38bd45af9308eaf04c5f0be1b678996c2e36ec5c |
import matplotlib.pyplot as plt
import numpy as np
def plot():
# Make plot with vertical (default) colorbar
fig = plt.figure()
ax = fig.add_subplot(111)
np.random.seed(123)
data = np.clip(np.random.randn(250, 250), -1, 1)
cax = ax.imshow(data, interpolation="nearest")
ax.set_title("Gauss... | nschloe/matplotlib2tikz | tests/test_noise.py | Python | mit | 704 | [
"Gaussian"
] | ad943c199d9e5d35db956e955e884ba1eb9db6b90e5155f5ea85203ac18056bd |
"""
This is a procedural interface to the matplotlib object-oriented
plotting library.
The following plotting commands are provided; the majority have
MATLAB |reg| [*]_ analogs and similar arguments.
.. |reg| unicode:: 0xAE
_Plotting commands
acorr - plot the autocorrelation function
annotate - annotate som... | SpaceKatt/CSPLN | apps/scaffolding/mac/web2py/web2py.app/Contents/Resources/lib/python2.7/matplotlib/pylab.py | Python | gpl-3.0 | 11,742 | [
"Gaussian"
] | 249961bf83d930212b0682f7a907caac573f9014a925741cf4324f3788c77d60 |
def freq0_carrier_calculation(freq_desired, fxosc=26.0, debug=False):
"""
Calculates the FREQ0, FREQ1, and FREQ2 24 bit word for main carrier frequency of the CC430.
:param freq_desired: Frequency in MHz that is desired to tune to (Integer or float)
:param fxosc: CC430 High Frequency crystal frequency ... | kb1lqc/Faraday-Software | faraday/proxyio/cc430radioconfig.py | Python | gpl-3.0 | 3,365 | [
"CRYSTAL"
] | d9767d50588bcf238f538ca5d57bf7d0464143a15336cdec0c17410f587ecf64 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry
# and reaction kinetics.
# Copyright (C) 2008-2012 Toon Verstraelen <Toon.Verstraelen@UGent.be>, An Ghysels
# <An.Ghysels@UGent.be> and Matthias Vandichel <Matthias.Vandichel@UGent.be>
# Center ... | molmod/tamkin | tamkin/examples/011_ethyl_ethene_lot/geotab.py | Python | gpl-3.0 | 4,532 | [
"Gaussian"
] | f363989393e9f4ed1d55292205796b7580b0fff7762d36f2cc71da11d52f0f94 |
"""
Loss functions and their derivatives
- Loss functions calculate overall loss
- Loss derivatives calculate loss per output neuron
as required by the backpropagation
# y is the observed output for the training example
# a is the predicted output
"""
import numpy as np
def clip(x):
epsilon = 1e-11
re... | anamayasullerey/test_net | src/start/loss_functions.py | Python | mit | 943 | [
"NEURON"
] | 114fac0f9ad56c884f70feaf01e840e390643dac2d6d15ce005504b5f80ec6c2 |
from .bernoulli import Bernoulli
from .exponential import Exponential
from .gaussian import Gaussian, HeteroscedasticGaussian
from .gamma import Gamma
from .poisson import Poisson
from .student_t import StudentT
from .likelihood import Likelihood
from .mixed_noise import MixedNoise
from .binomial import Binomial
from .... | befelix/GPy | GPy/likelihoods/__init__.py | Python | bsd-3-clause | 380 | [
"Gaussian"
] | 441be4950bd4b3e10f4040b90ae555506389bead09bce5575b18bec98f49e335 |
"""
@package medpy.itkvtk
All classes/applications/scripts in this package make use of some ITK and/or VTK function or depend on functionality that uses them.
The appropriate Python binding have to be installed.
Please access sub-packages directly to avoid dependency clashes for if
only ITK or only VTk bindings are av... | kleinfeld/medpy | medpy/itkvtk/__init__.py | Python | gpl-3.0 | 496 | [
"VTK"
] | 265ac7a86ecbcde45289a733a25a24a9b067500e2fad4da5c847e2ce6f68271a |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements representations of slabs and surfaces, as well as
algorithms for generating them. If you use this module, please consider
citing the following work::
R. Tran, Z. Xu, B. Radhakris... | mbkumar/pymatgen | pymatgen/core/surface.py | Python | mit | 87,929 | [
"pymatgen"
] | 5d8205c3a1dfa1b23e3786ccdf2465adcc4dae88bf9969ca0821541975571c5b |
#!/usr/bin/env python
import os
import glob
from setuptools import setup, find_packages
module_dir = os.path.dirname(os.path.abspath(__file__))
if __name__ == "__main__":
setup(
name='GASP',
version='0.1',
description='Genetic algorithm for structure and phase prediction',
long_d... | henniggroup/GASP-python | setup.py | Python | mit | 1,398 | [
"pymatgen"
] | 5c01abf5f0e23c9479d43b906c4e4abc559588fceef22861252409b1e7127c90 |
# Copyright 2014 The Oppia Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... | amgowano/oppia | core/domain/email_manager_test.py | Python | apache-2.0 | 71,267 | [
"VisIt"
] | 981f8fc1791c53030405b0e1290f7ba5ecb23faf82528b60d73f086d211d8a2a |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
from scipy.constants import N_A
from pymatgen.core.periodic_table import Element
from pymatgen.core.units import Charge, Time
from pymatgen.analysis.reaction_... | gpetretto/pymatgen | pymatgen/apps/battery/conversion_battery.py | Python | mit | 20,899 | [
"pymatgen"
] | 97441b6a36f89bf27420ed6c95d9678ff57f41ddfcb47088d4eef0d54ddde3a9 |
'''
MPI script for running a leave-one-out cross validation
of interpolated temperature normals and daily temperatures
using the optimal variogram and station bandwidth parameters
set in steps 21-23.
Must be run using mpiexec or mpirun.
'''
from mpi4py import MPI
from twx.db import StationSerialDataDb, STN_ID, MASK, ... | jaredwo/topowx | scripts/step24_mpi_xval_interp.py | Python | gpl-3.0 | 6,107 | [
"NetCDF"
] | b68e0f3ef2dd4b35997fc1941f5b219dca46197b6d0c0ee5a4c9158ed784b5be |
'''
Author: Chandan Dwivedi
Date: 04/02/2019
function to claculate amount of water stored in platform0
'''
import heapq
def WaterStoredInPlatform(height):
height=height.tolist()
m = len(height)
if m == 0:
return 0
n = len(height[0])
if n == 0:
return 0
... | Jargon4072/DS-ALGO_implementations | python/ml_test/waterStored.py | Python | gpl-3.0 | 3,574 | [
"VisIt"
] | cc65c73d53ea99f2cb0aa84acc7b88667b71e0e37e76f20a1152ff9b53f2d0d0 |
##In the game, Monopoly, the standard board is set up in the following way:
##
##GO A1 CC1 A2 T1 R1 B1 CH1 B2 B3 JAIL
##H2 C1
##T2 U1
##H1 C2
##CH3 C3
##R4 ... | feliposz/project-euler-solutions | python/euler84.py | Python | mit | 7,297 | [
"VisIt"
] | 1f83c8da3513d37ae05fe5e5525f9b253c5c33ff7beb25caabcb710c3394a42c |
'''
Random field generation using rft1d.random.Generator1D
Notes:
-- Using Generator1D is faster than rft1d.randn1d for iterative
generation.
-- When FWHM gets large (2FWHM>nNodes), the data should be
padded using the *pad* keyword.
'''
import numpy as np
from matplotlib import pyplot
from spm1d import rft1d
#(0... | 0todd0000/spm1d | spm1d/rft1d/examples/random_fields_2.py | Python | gpl-3.0 | 909 | [
"Gaussian"
] | 557e8ab4bb97cc43ae1c90e7ebcae948fd4b716467b1d54fefad7283388cb187 |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright (C) 2013 Yahoo! Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.or... | ntt-sic/cinder | cinder/volume/flows/base.py | Python | apache-2.0 | 2,230 | [
"VisIt"
] | 38742d43e947a1f38a42ccbf59a932ee44e3b6021045abae0d753ff4b75afbe2 |
# author: oskar.blom@gmail.com
#
# Make sure your gevent version is >= 1.0
import gevent
from gevent.wsgi import WSGIServer
from gevent.queue import Queue
from flask import Flask, Response
import time
# SSE "protocol" is described here: http://mzl.la/UPFyxY
class ServerSentEvent(object):
def __init__(self, dat... | otger/PubSubTest | tests/webtests/sse_flask_test.py | Python | lgpl-3.0 | 2,392 | [
"VisIt"
] | ebf25f1c1fcfea9e4ea89dfa710bd1f813461b5f36ea49958c3555ea701ede6e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#al_blast.py
#01/2014
__author__ = 'Igor Rodrigues da Costa'
__contact__ = 'igor.bioinfo@gmail.com'
''' This program will check if ALs are unique and present
in the genomes of compared species. Blast+ required.
todo: melhorar documentação, adicionar .format as strings, m... | igorrcosta/alfie | al_blast.py | Python | gpl-2.0 | 13,513 | [
"BLAST"
] | 0c7c3742b6e3e313cde3f5bc6449c4393e3a067a6ad6a7a3441d8f887fad1b8d |
from __future__ import absolute_import
import datetime
import pytest
import six
import unittest
from datetime import timedelta
from sentry_relay.consts import SPAN_STATUS_CODE_TO_NAME, SPAN_STATUS_NAME_TO_CODE
from django.utils import timezone
from freezegun import freeze_time
from sentry import eventstore
from sent... | beeftornado/sentry | tests/sentry/api/test_event_search.py | Python | bsd-3-clause | 121,532 | [
"VisIt"
] | 7b4138d59ba662ccafdb167c76f542ac01dae0e6b7dbfcfff3ffb89253bf29a8 |
# -*- coding: utf-8 -*-
"""
Bok choy acceptance tests for problems in the LMS
See also old lettuce tests in lms/djangoapps/courseware/features/problems.feature
"""
from textwrap import dedent
from ..helpers import UniqueCourseTest
from ...pages.studio.auto_auth import AutoAuthPage
from ...pages.lms.courseware import ... | kursitet/edx-platform | common/test/acceptance/tests/lms/test_lms_problems.py | Python | agpl-3.0 | 16,119 | [
"VisIt"
] | 7b58e0be68d0a174bd1ac0f57f50e6cae9422c3d4fb79c3416e9577667fea9b9 |
from __future__ import with_statement
import hashlib
import os
import posixpath
import stat
import re
from fnmatch import filter as fnfilter
from fabric.state import output, connections, env
from fabric.utils import warn
from fabric.context_managers import settings
from six import string_types
def _format_local(loc... | pashinin/fabric | fabric/sftp.py | Python | bsd-2-clause | 11,657 | [
"VisIt"
] | e3bb39601360acdf9e74e4c439824bb70f8a4c712aa15f47685a3791a92be8b8 |
# Copyright 2018 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | google/loaner | loaner/web_app/backend/models/tag_model.py | Python | apache-2.0 | 7,606 | [
"Amber"
] | 03c5748b321e5de2654b1576cbdb738fb9799fbe535bd343cb6cddb7de02f714 |
from django.core.validators import MinValueValidator, MaxValueValidator
from django.db import models
from django.db.models.deletion import PROTECT
from django.utils.safestring import mark_safe
from edc_base.model_managers import HistoricalRecords
from edc_base.model_validators import datetime_not_future
from ..managers... | botswana-harvard/ambition-subject | ambition_subject/models/lumbar_puncture_csf.py | Python | gpl-3.0 | 5,605 | [
"VisIt"
] | 1cf3cb23601fbb957fbc163361d781be6570695ad9aaf158280becec43209f03 |
#!/usr/bin/env python3
# coding=utf-8
"""
ahuman.py is to showcase agps3.py, a Python 2.7-3.5 GPSD interface
Defaults host='127.0.0.1', port=2947, gpsd_protocol='json'
Toggle Lat/Lon form with '0', '1', '2', '3' for RAW, DDD, DMM, DMS
Toggle units with '0', 'm', 'i', 'n', for 'raw', Metric, Imperial, Nautical
Togg... | wadda/gps3 | examples/ahuman.py | Python | mit | 13,753 | [
"MOE"
] | 66a1857f4174f98c1e5154b100633075f35a786d31804e426cd7c51552c4463d |
# Copyright 2020 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | xzturn/tensorflow | tensorflow/python/keras/preprocessing/image_pipeline.py | Python | apache-2.0 | 13,671 | [
"Gaussian"
] | 967633660215d8642ec72b44d9e698139f5132988f2005db284901faf12156ff |
# ## Copyright (c) 2013, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
import itertools, logging
from ..kern import Kern
from ..core.parameterization.variational import NormalPrior
from ..core.parameterization import Param
from paramz import ObsAr
from .... | SheffieldML/GPy | GPy/models/mrd.py | Python | bsd-3-clause | 15,224 | [
"Gaussian"
] | 71eaef7e3689e90a0a08412cef91d7e26aa58d297c90d4ef5c960f07c2268451 |
from setuptools import setup
import empiriciSN
setup(
name="empiriciSN",
version='1.0.1',
author="Tom Holoien",
author_email="tholoien@gmail.com",
url="https://github.com/tholoien/empiriciSN",
packages=["empiriciSN"],
description="Generate realistic parameters for a SN given host galaxy ob... | tholoien/empiriciSN | setup.py | Python | mit | 872 | [
"Galaxy"
] | 6d9e2627a91bd7d0ab24ad2757e779f66e3a0ad037f4305c7c8d944a2cc961c5 |
#!/usr/bin/env python
# (C) Copyright IBM Corporation 2004, 2005
# All Rights Reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without restriction, including without limitation
# ... | aYukiSekiguchi/ACCESS-Chromium | third_party/mesa/MesaLib/src/mapi/glapi/gen/glX_proto_send.py | Python | bsd-3-clause | 30,592 | [
"Brian"
] | edd58bffdbeea004ba44a8aae64ec00ba3c30c953aebfcf48595f5f58cb22e0f |
#!/usr/bin/env python
## \file tools.py
# \brief file i/o functions
# \author T. Lukaczyk, F. Palacios
# \version 6.1.0 "Falcon"
#
# The current SU2 release has been coordinated by the
# SU2 International Developers Society <www.su2devsociety.org>
# with selected contributions from the open-source community.
#
# Th... | drewkett/SU2 | SU2_PY/SU2/io/tools.py | Python | lgpl-2.1 | 47,417 | [
"ParaView"
] | c2ae780cfde629900af565ecbec82a6cf4c5c520f7f34d47644e2207d0109b7e |
# Orca
#
# Copyright 2006-2009 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/scripts/apps/gnome-window-properties/script.py | Python | gpl-3.0 | 1,804 | [
"ORCA"
] | 68217451cb0eadc24d5e087995c6ff9fc73ca4239fedf78870a20203ec8bd04a |
#
# Copyright (C) 2013-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | hmenke/espresso | samples/lj-demo.py | Python | gpl-3.0 | 20,085 | [
"ESPResSo",
"Mayavi"
] | beb7611a3fddfa8ece3bb6b8be074f293b88a8c39c3041573f3e72715b91b16b |
try: paraview.simple
except: from paraview.simple import *
from paraview import coprocessing
#--------------------------------------------------------------
# Code generated from cpstate.py to create the CoProcessor.
# ----------------------- CoProcessor definition -----------------------
def CreateCoProcessor()... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/Examples/Catalyst/MPISubCommunicatorExample/SampleScripts/feslicescript.py | Python | gpl-3.0 | 3,246 | [
"ParaView"
] | 952e471d00f9f22ea63498b7cbce04494d855b77d12b51da2f14c32e2e7e9315 |
"""
Support for Google - Calendar Event Devices.
For more details about this platform, please refer to the documentation at
https://home-assistant.io/components/google/
NOTE TO OTHER DEVELOPERS: IF YOU ADD MORE SCOPES TO THE OAUTH THAN JUST
CALENDAR THEN USERS WILL NEED TO DELETE THEIR TOKEN_FILE. THEY WILL LOSE THEI... | PetePriority/home-assistant | homeassistant/components/google/__init__.py | Python | apache-2.0 | 9,843 | [
"VisIt"
] | 960397dae10c95502b2b7fe3f0bb70d22e6538d280a65620b0aab898ef4e6df4 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Filters
=======
Filter bank construction
------------------------
.. autosummary::
:toctree: generated/
dct
mel
chroma
constant_q
Miscellaneous
-------------
.. autosummary::
:toctree: generated/
constant_q_lengths
cq_to_chroma
wi... | craffel/librosa | librosa/filters.py | Python | isc | 20,966 | [
"Gaussian"
] | 3d0f8c1493d7ce7302a15ad0be4eff1b3875ac9f995525b088238820b5bf215c |
"""
======================================================================
A demo of structured Ward hierarchical clustering on an image of coins
======================================================================
Compute the segmentation of a 2D image with Ward hierarchical
clustering. The clustering is spatially ... | chrsrds/scikit-learn | examples/cluster/plot_coin_ward_segmentation.py | Python | bsd-3-clause | 2,639 | [
"Gaussian"
] | 5c72f971b6124a633df07e10e2e4c5521fa37ce3e29803fd9d193798539a45cd |
"""
As this module has an hard dependency against mininet and on the availability
of some commands, perform the import at the top-level in order to make the
relevant checks once, at import time.
Furthermore, all these classes will be import anyway at some point when
instantiating a Fibbing lab ...
"""
try:
import m... | Fibbing/FibbingNode | fibbingnode/misc/mininetlib/__init__.py | Python | gpl-2.0 | 1,588 | [
"VisIt"
] | 97f02cf649782cebe035f43c440e64d599515b476244ad89ddac767d31c39b95 |
'''
libChEBIpy (c) University of Manchester 2015
libChEBIpy is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
from ._base_object import BaseObject
class Formula(BaseObject):
'''Class representing a ChEBI formula.'''
... | libChEBI/libChEBIpy | libchebipy/_formula.py | Python | mit | 594 | [
"VisIt"
] | 5b9066a0607d7bf225ccbb84f5ca7691740f44c88a57b69856b760051f390d10 |
"""
# Notes:
- This simulation seeks to emulate the COBAHH benchmark simulations of (Brette
et al. 2007) using the Brian2 simulator for speed benchmark comparison to
DynaSim. However, this simulation includes CLOCK-DRIVEN synapses, for direct
comparison to DynaSim's clock-driven architecture. The synaptic connec... | asoplata/dynasim-benchmark-brette-2007 | output/Brian2/brian2_benchmark_COBAHH_clocksyn_hidens_0008/brian2_benchmark_COBAHH_clocksyn_hidens_0008.py | Python | gpl-3.0 | 3,769 | [
"Brian"
] | d7539eb5716d26b2f723b7976ac1a831d601f1036049677448956db29c675ec2 |
# Author: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Copyright (c) 2010, Enthought, Inc.
# License: BSD Style.
# Standard library imports.
import unittest
import numpy as np
# Local imports.
from mayavi.core.null_engine import NullEngine
# Enthought library imports
from mayavi.filters.threshold import Thresh... | dmsurti/mayavi | mayavi/tests/test_threshold_filter.py | Python | bsd-3-clause | 4,079 | [
"Mayavi"
] | eb12210fbab5baa0f613c506e12be2a0a0e85ffab42a0c6d4ca289d1b28701e0 |
# This file is part of wger Workout Manager.
#
# wger Workout Manager is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# wger W... | petervanderdoes/wger | wger/exercises/tests/test_equipment.py | Python | agpl-3.0 | 6,269 | [
"VisIt"
] | fa9a65fe7809142710b59978c8f821de1e8b44fe10fb201a80737b877391517e |
import unittest
from ctree.jit import *
from ctree import CONFIG
from fixtures.sample_asts import *
import ctypes
from ctree.transformations import PyBasicConversions
class TestTranslator(LazySpecializedFunction):
def args_to_subconfig(self, args):
return {'arg_typesig': tuple(type(get_ctype(a)) for a in ... | ucb-sejits/ctree | test/test_jit.py | Python | bsd-2-clause | 4,254 | [
"VisIt"
] | 9eb72aceef528035414c45d3afb463b6680cb4107d55c32ae8d2436d396c4869 |
# Copyright 2012 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requ... | asgard-lab/neutron | neutron/tests/unit/agent/linux/test_ip_lib.py | Python | apache-2.0 | 57,832 | [
"Brian"
] | 1deae8a23f6007c319f121493a8c4666bba572595caab242cca9e675ce4d0be3 |
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | gfonk/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 24,500 | [
"Galaxy"
] | e2ed52bb0d5e2e238214a59314b1f29402e10456f9671f6ae13b944cf857106e |
# -*- coding: utf-8 -*-
# Copyright 2014-2015 VPAC
#
# Karaage documentation build configuration file, created by
# sphinx-quickstart on Thu Jan 16 14:28:57 2014.
#
# This file is execfile()d with the current directory set to its containing
# dir.
#
# Note that not all possible configuration values are present in this
... | Karaage-Cluster/karaage-debian | docs/user/conf.orig.py | Python | gpl-3.0 | 8,786 | [
"Brian"
] | ad2cea9e8f1703d29e1975c75218d103d3ee4ddd70a948f6df0e527720b708f2 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2020, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""cclib: parsers and algorithms for computational chemistry
cclib is a Python library that provides parsers for computat... | berquist/cclib | setup.py | Python | bsd-3-clause | 2,036 | [
"cclib"
] | d4b273c806de568ad97e281010d76e673d4276ff643f7e7a44fdba69d6387dbf |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.contrib.auth.decorators import login_required
... | andresgz/invite2app | config/urls.py | Python | bsd-3-clause | 1,274 | [
"VisIt"
] | 98d30b20502d6436ce7edd654c45cef47296884f313195596e3e33d18446f9fb |
#!/usr/bin/env python3
import os
import argparse
import sys
from time import sleep
import subprocess
import myPersonalFunctions
parser = argparse.ArgumentParser(description="This is my aawsem project headquarter")
parser.add_argument("--dec25", help="Run code on Dec 25", action="store_true", default=False)
parser.add_... | luwei0917/awsemmd_script | archive/aawsem.py | Python | mit | 24,212 | [
"PyMOL"
] | 110bde21b3061e9f116184457445f083795dec9a9c2afa85feaa6e1d7028f020 |
# 2015-03-23 LLB remove 1s wait time between snapshots
import corr, adc5g, httplib
import matplotlib.pyplot as plt
import numpy as np
import scipy.optimize
import sys, time
r2 = corr.katcp_wrapper.FpgaClient('r2dbe-1')
r2.wait_connected()
if len(sys.argv) == 2:
rpt = int(sys.argv[1])
else:
rpt = 30
def gaus... | sao-eht/lmtscripts | 2017/corestats.py | Python | mit | 1,243 | [
"Gaussian"
] | 1b8413724f56c4733f9ca1f55568255e5edb2f2fe4decb27fed57427d049c083 |
"""Main entry point for distributed next-gen sequencing pipelines.
Handles running the full pipeline based on instructions
"""
from __future__ import print_function
from collections import defaultdict
import copy
import os
import sys
import resource
import tempfile
from bcbio import log, heterogeneity, hla, structura... | biocyberman/bcbio-nextgen | bcbio/pipeline/main.py | Python | mit | 23,807 | [
"Bowtie"
] | 56b75480ca968c02de37ac13d5b41dc1ded1d77f41fd43a87c4f54cb1e9638a0 |
# Copyright (c) 2003-2007 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or ... | mattjmorrison/Pylint | checkers/exceptions.py | Python | gpl-2.0 | 8,086 | [
"VisIt"
] | c46b9a58e38c296b29c18b7d86bb246066690cf295fb92b83d9220033cf4372b |
# -*- coding: utf-8 -*-
#
# complex.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (... | magnastrazh/NEUCOGAR | nest/serotonin/research/C/nest-2.10.0/extras/ConnPlotter/examples/complex.py | Python | gpl-2.0 | 5,485 | [
"Gaussian"
] | 2f79615d31c7ba9955e07d982556ba337a76e1ed5f5a1353b2d4092a63979b2e |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | lgarren/spack | var/spack/repos/builtin/packages/r-deseq2/package.py | Python | lgpl-2.1 | 2,539 | [
"Bioconductor"
] | 5145c0f37d044d1d96b4458bc5c2f7f211a1fc545f3fffa990c651deb467fa02 |
#########################################################################
## This program is part of 'MOOSE', the
## Messaging Object Oriented Simulation Environment.
## Copyright (C) 2013 Upinder S. Bhalla. and NCBS
## It is made available under the terms of the
## GNU Lesser General Public License version 2... | BhallaLab/moose-examples | snippets/reacDiffSpinyNeuron.py | Python | gpl-2.0 | 10,697 | [
"MOOSE",
"NEURON"
] | 550946be09e9b352215b2a045b622958eb37ed21079c4bcab71c15a554720133 |
""" core implementation of testing process: init, session, runtest loop. """
import functools
import os
import sys
import _pytest
import _pytest._code
import py
import pytest
try:
from collections import MutableMapping as MappingMixin
except ImportError:
from UserDict import DictMixin as MappingMixin
from _py... | vicky2135/lucious | oscar/lib/python2.7/site-packages/_pytest/main.py | Python | bsd-3-clause | 27,754 | [
"VisIt"
] | 00248f2ae35411fa0ef72c6a911cb512fdc543cfb011d8d41ad91728a434c543 |
#################################################################
#
# CoreCodex - Online Assessment Tool of Programming Challenges
# Copyright 2011 Core S2 - Software Solutions - See License.txt for info
#
# This source file is developed and maintained by:
# + Jeremy Bridon jbridon@cores2.com
#
# File: lib/Users.py
# I... | nint22/CoreCodex | corecodex/lib/Users.py | Python | mit | 14,618 | [
"VisIt"
] | 7009724748ea3ad5fed7b17d65ad08fea8b75051e50313710d0398024cac0043 |
#!/usr/bin/python
#
# Copyright 2013 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required b... | caioserra/apiAdwords | examples/adspygoogle/adwords/v201309/misc/use_oauth2.py | Python | apache-2.0 | 5,056 | [
"VisIt"
] | 6751e895191bbfaac20620fbc190bf7bb8b3bc9712e0c87f25ebd93b9e94b382 |
#!/usr/bin/env python
import os, sys, argparse, string, re
import networkx as nx
SINGLE_INDEX=1
PGRAPH=nx.DiGraph()
def process_hog(inputdir, fasta_ext):
protdict={}
for hog in os.listdir(inputdir):
if hog.endswith(fasta_ext):
hog_to_open = inputdir + '/' + hog
#hog name trims off the extension
hog_n... | tsackton/ratite-genomics | 03_homology/02_hmm/process_hmm_output.py | Python | gpl-3.0 | 7,506 | [
"Biopython"
] | 6cd3819fca217f1ed271e27407ad28431fdf07583a737ea930e598ea18242a3f |
#!/usr/bin/env python3
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
... | nuclear-wizard/moose | python/chigger/tests/field_data/plot_current_field_data.py | Python | lgpl-2.1 | 1,144 | [
"MOOSE"
] | ba06c587548d5b448b4f331f92f5cc0403ea8cac4e9be6918491d77699cfcca6 |
# (C) British Crown Copyright 2010 - 2015, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | jkettleb/iris | lib/iris/io/__init__.py | Python | lgpl-3.0 | 13,525 | [
"NetCDF"
] | cd859eeeab25f4b710b8c58ec9f208c330432fd88e3894917c85d88229ed99ee |
#!/usr/bin/env python
#pylint: disable=missing-docstring
#################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment #
# #... | liuwenf/moose | python/chigger/tests/colorbar/exodus_colorbar.py | Python | lgpl-2.1 | 1,236 | [
"MOOSE"
] | fbc0524ca3aea611f0dfb616d8d98cf483546beb567a5ddaff96639a0ef53cb0 |
"""
Single page performance tests for Studio.
"""
from bok_choy.web_app_test import with_cache
from nose.plugins.attrib import attr
from ..tests.helpers import AcceptanceTest
from common.test.acceptance.pages.studio.auto_auth import AutoAuthPage
from common.test.acceptance.pages.studio.overview import CourseOutlinePa... | caesar2164/edx-platform | common/test/acceptance/performance/test_studio_performance.py | Python | agpl-3.0 | 3,386 | [
"VisIt"
] | 7201ba899f30aaf694d9c8cc81cab88a1aa450317dce308b03a21fbd5629d005 |
""" :mod: DMSRequestOperationsBase
====================
Just a collector of common functions
"""
from DIRAC import S_OK, S_ERROR
from DIRAC.RequestManagementSystem.Client.Operation import Operation
from DIRAC.RequestManagementSystem.Client.File import File
from DIRAC.Resources.Storage.StorageElement import S... | DIRACGrid/DIRAC | src/DIRAC/DataManagementSystem/Agent/RequestOperations/DMSRequestOperationsBase.py | Python | gpl-3.0 | 4,190 | [
"DIRAC"
] | c7acb341383ee0286a367f8b64d79e19230f46aab6428ce2e4531e6ffdd3f583 |
"""Copyright 2017 Google Inc. Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
dist... | conversationai/wikidetox | wikiconv/ingest_revisions/ingester_test.py | Python | apache-2.0 | 3,721 | [
"TINKER"
] | 295209570f3d415aa4b4be3e34a3bb70a4acc7007c5463d0aa8a105a3e8f70ae |
# pylint: disable=C0111
# pylint: disable=W0621
from lettuce import world, step
from nose.tools import assert_true, assert_equal # pylint: disable=E0611
from terrain.steps import reload_the_page
from selenium.common.exceptions import StaleElementReferenceException
############### ACTIONS ####################
@step(... | jswope00/GAI | cms/djangoapps/contentstore/features/checklists.py | Python | agpl-3.0 | 4,660 | [
"VisIt"
] | 72c96445ec0e8d8bdab53ba6ba1645c3f5ed9d06cbc1036f38de38a4278714af |
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