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"""
sphinx.writers.html5
~~~~~~~~~~~~~~~~~~~~
Experimental docutils writers for HTML5 handling Sphinx' custom nodes.
:copyright: Copyright 2007-2019 by the Sphinx team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
import os
import posixpath
import sys
import warnings
from typing impor... | lmregus/Portfolio | python/design_patterns/env/lib/python3.7/site-packages/sphinx/writers/html5.py | Python | mit | 33,898 | [
"VisIt"
] | 95b73a15df133258b29a93573d839847ab0699b6bbc9d8894e1bb5f36a1e355b |
"""
Statistical Functions
=====================
This module contains a large number of probability distributions as
well as a growing library of statistical functions.
Each included distribution is an instance of the class rv_continous.
For each given name the following methods are available. See docstring
for rv_co... | jasonmccampbell/scipy-refactor | scipy/stats/info.py | Python | bsd-3-clause | 8,282 | [
"Gaussian"
] | 80f95dba314b0b45a9a3799051594d18e39419b18bf6cd37700d66701bf723ec |
import argparse
import os
import shutil
import time
from subprocess import Popen
def _kill_servers():
Popen('kill -9 `lsof -ti :8000` > /dev/null', shell=True, stderr=None)
Popen('kill -9 `lsof -ti :4000` > /dev/null', shell=True, stderr=None)
def start_servers(test=False):
"""
Start the backend ... | northwest-knowledge-network/mdedit | startup.py | Python | bsd-3-clause | 3,180 | [
"VisIt"
] | c34fa94e4efaffe6def0770b8960082de8418634680f051ad1cf382cb97052ce |
"""
Package for interacting on the network at a high level.
Copyright (c) 2014 Brian Muller
Copyright (c) 2015 OpenBazaar
"""
import pickle
import httplib
from binascii import hexlify
from twisted.internet.task import LoopingCall
from twisted.internet import defer, reactor, task
import nacl.signing
import nacl.hash
... | JimmyMow/OpenBazaar-Server | dht/network.py | Python | mit | 14,642 | [
"Brian"
] | 86e42f2545403599adb354db84fe0efbfc2e62532be16b7aac7077cd9dfbcfff |
# -*- encoding: utf-8 -*-
"""
Test suite for h2o.make_metrics().
:copyright: (c) 2016 H2O.ai
:license: Apache License Version 2.0 (see LICENSE for details)
"""
from __future__ import absolute_import, division, print_function, unicode_literals
import sys
sys.path.insert(1, "../../")
import h2o
from tests import pyun... | h2oai/h2o-3 | h2o-py/tests/testdir_misc/pyunit_make_metrics.py | Python | apache-2.0 | 11,485 | [
"Gaussian"
] | db43dc66443f5ce27cc967c174cb7f9e685092634ccb8cf9d923d25218d50efb |
""" DIRAC.TransformationSystem.Client package """
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
| yujikato/DIRAC | src/DIRAC/TransformationSystem/Client/__init__.py | Python | gpl-3.0 | 159 | [
"DIRAC"
] | 9abc21f8f700fb734fcc4a67141f26ccf11131b2b5d741f3962a8d2801acf5ee |
# -*- coding: utf-8 -*-
# (c) University of Strathclyde 2021
# Author: Leighton Pritchard
#
# Contact: leighton.pritchard@strath.ac.uk
#
# Leighton Pritchard,
# Strathclyde Institute for Pharmacy and Biomedical Sciences,
# Cathedral Street,
# Glasgow,
# G4 0RE
# Scotland,
# UK
#
# The MIT License
#
# Copyright (c) 2021... | widdowquinn/pyani | pyani/aniblastall.py | Python | mit | 3,921 | [
"BLAST"
] | fbcb52fa6cfb2d1f869ce4a02e240d5b434c7f8fb5e8f7d49c5f557dac564781 |
# Copyright 2004-2017 Tom Rothamel <pytom@bishoujo.us>
#
# Permission is hereby granted, free of charge, to any person
# obtaining a copy of this software and associated documentation files
# (the "Software"), to deal in the Software without restriction,
# including without limitation the rights to use, copy, modify, m... | kfcpaladin/sze-the-game | renpy/display/particle.py | Python | mit | 18,092 | [
"VisIt"
] | 1a4cb57cc09f8cbb0b27abb8a7bd404041c487d473afe9bf326e46e6309c4bf7 |
#!/usr/bin/env python
#-*- coding:utf-8 -*-
# vim:ai:sta:et:ts=4:sw=4:sts=4
"""kernelng 0.x
Tool for maintaining customized overlays of kernel-ng.eclass-based ebuilds
Copyright 2005-2014 Gentoo Foundation
Copyright (C) 2005 Colin Kingsley <tercel@gentoo.org>
Copyright (C) 2008 Zac Medico <zmedico@gentoo.org>
Cop... | gmt/kernel-ng-util | kernelng/output.py | Python | gpl-2.0 | 12,218 | [
"Brian"
] | d9124de95b5467f153b0db1b26fed43f0ce195dd1c7bfcfb77d8eff319b1b1b9 |
#Copyright Durham University and Andrew Reeves
#2014
# This file is part of soapy.
# soapy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your optio... | AOtools/soapy | soapy/confParse.py | Python | gpl-3.0 | 51,774 | [
"Gaussian"
] | 2b6bd27c182ee07b2d144a6b69db40e1134db648af318dcbf41535dba64bceb6 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | jaxnerf/nerf/model_utils.py | Python | apache-2.0 | 12,316 | [
"Gaussian"
] | 8b3795a7280b2661b64f5cdf935d4369aa92f690dddf80305ac2d1d3d8dca0c7 |
#!/usr/bin/env python
# Copyright 2014-2021 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/mp/test/test_dfmp2_native.py | Python | apache-2.0 | 12,762 | [
"PySCF"
] | 8f35cf427734c8728e8a5992e557b024d0ccdb918dae1c9f23372be122f60758 |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Deleting model 'IonChannelSyn'
db.delete_table('neuroelectro_ionchannelsyn')
# Del... | lessc0de/neuroelectro_org | neuroelectro/south_migrations/0009_auto__del_ionchannelsyn__del_ionchannel.py | Python | gpl-2.0 | 10,450 | [
"NEURON"
] | 6fa4d1bfed7fbed1ff0f89168b01fb89245a2dcc6f92505a5c4db36861dc8170 |
import json
import logging
import os
import signal
import sys
import urllib2
from multiprocessing.process import Process
from urllib2 import HTTPError
from wsgiref.simple_server import make_server
sys.path.insert(0, os.path.abspath(os.path.realpath(__file__) + '/../../../'))
from oauth2.compatibility import parse_qs... | candango/python-oauth2 | docs/examples/resource_owner_grant.py | Python | mit | 6,999 | [
"VisIt"
] | 8d36f6779bd46d3314ec17673e7fd8e589be80537b8acb1d587649cd7b03f711 |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | KaiSzuttor/espresso | testsuite/python/pair_criteria.py | Python | gpl-3.0 | 4,508 | [
"ESPResSo"
] | 578917d5372f523d996ba9a52a6a86a3ff3507fc6c9d8c188a70025a2e57de56 |
""" Author: Ning Guo <ceguo@connect.ust.hk>
run `mv triaxialRough.yade.gz 0.yade.gz`
to generate initial RVE packing
How to run this script:
sudo apt install python-escript
cd examples/FEMxDEM
export PYTHONPATH="/usr/lib/python-escript:../../py/FEMxDEM"
export LD_LIBRARY_PATH=/usr/lib/python-es... | cosurgi/trunk | examples/FEMxDEM/triaxialRough.py | Python | gpl-2.0 | 3,699 | [
"VTK"
] | 97091aee6f9aa9698ac089cf27017769aad227be1d97c1dc257227450972fe79 |
# coding: utf-8
# Distributed under the terms of the MIT License.
from .model import AppModel
from ababe.stru.element import Specie
from ababe.stru.scaffold import GeneralCell
from ababe.stru.sogen import OccupyGenerator
from ababe.stru.io import VaspPOSCAR, YamlOutput
from ababe.stru.restriction import MinDistanceRest... | unkcpz/ababe | ababe/cmdline/apps/occupytenter.py | Python | mit | 4,029 | [
"VASP"
] | 51110b831e2d849207b63e1f4f7df3c88e6e5faf7b6689580e239dcdcd6b501f |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publi... | thica/ORCA-Remote | src/scripts/tools/tool_wikidoc/WikiDoc.py | Python | gpl-3.0 | 16,209 | [
"ORCA"
] | a3805c1cb9c54a80d6516bec9727db71cc1f9651304de617163ceaee4ab0f9ff |
"""
DIRAC.RequestManagementSystem.DB package
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
| yujikato/DIRAC | src/DIRAC/RequestManagementSystem/DB/__init__.py | Python | gpl-3.0 | 161 | [
"DIRAC"
] | 349b46457e7381bacc9bf88fda04d0fe7505d6e100b28ad304fb02214175f6d1 |
import pynacolada as pcd
import numpy as np
import datetime as dt
import sciproc as sp
from time import sleep
from Scientific.IO import NetCDF
# purpose: A short tutorial of using pynacolada.pcd(). The example should work with COSMO-CLM data output.
# author: Hendrik Wouters <hendrik.wouters@ees.kuleuven.be>
print('e... | hendrikwout/pynacolada | old/examples/examplepcd.py | Python | gpl-3.0 | 5,639 | [
"NetCDF"
] | 2083f52faacdf16f064b84ef9ff9bc7f6653d986a653b31b809954c535477519 |
import sys
import os.path
from matplotlib import pyplot as plt
import numpy as np
# Proteus native probe
proteus_gauge_file = 'combined_gauge_0_0.5_sample_all.csv'
# Paraview probe
paraview_gauge_file = 'probe_0.5_0.5_0.csv'
global interactive
interactive = True
def parse_proteus_gauge_fields(header):
def parse_... | erdc-cm/air-water-vv | 2d/benchmarks/quiescent_water_probe_benchmark/ProbePlot.py | Python | mit | 3,321 | [
"ParaView"
] | d01b2cd7ebe416d87cbe789074a93086004d69598045bacbbd46ccaea32e4c06 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
import galaxy.main.fields
import galaxy.main.mixins
class Migration(migrations.Migration):
dependencies = [
('main', '0049_auto_20161013_1744'),
]
operations = [
migrations.CreateMod... | chouseknecht/galaxy | galaxy/main/migrations/0050_auto_20171024_0354.py | Python | apache-2.0 | 1,295 | [
"Galaxy"
] | 89e5a5afcb4042ce725cdfc6bdc7932a9fe835e949cbfe14f575594344e4d7ae |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module contains some math utils that are used in the chemenv package.
"""
__author__ = "David Waroquiers"
__copyright__ = "Copyright 2012, The Materials Project"
__credits__ = "Geoffroy Hautier"
__ve... | mbkumar/pymatgen | pymatgen/analysis/chemenv/utils/math_utils.py | Python | mit | 10,095 | [
"pymatgen"
] | c6e5dd6308f074dc3b10dc72c9e6137f7d5a7a7c5e70992323b387dfcc59efb1 |
#!/usr/bin/env python
import sys
import argparse
import numpy as np
from mapTools import *
from utilities import filesFromList, writeLog
from plotTools import addImagePlot
import matplotlib.pyplot as plt
'''
Description:
Author: Mikko Auvinen
mikko.auvinen@helsinki.fi
University of Helsinki &
... | saskartt/P4UL | pyRaster/rasterTileSuperposition.py | Python | mit | 4,677 | [
"Gaussian"
] | 23e40c925f63f8dae1a3602182809b83f7253f69b929c94ba1dbc51f8b84e659 |
from __future__ import division
from __future__ import print_function
from future import standard_library
standard_library.install_aliases()
from builtins import str
from builtins import range
from datetime import datetime, timedelta, date
from pickle import load, dump
import numpy as np
import os
from numpy import nan... | timduly4/pyglow | src/pyglow/generate_kpap.py | Python | mit | 14,519 | [
"Brian"
] | 853369cee2b50e94fce72097347df2fd11d9c9648217ff4a664d23d5e6daaae3 |
import numpy as np
from keras import backend as K
def D2(X, Y):
""" Calculate the pointwise (squared) distance.
Arguments:
X: of shape (n_sample, n_feature).
Y: of shape (n_center, n_feature).
Returns:
pointwise distances (n_sample, n_center).
"""
XX = K.sum(K.square(X), a... | EigenPro/EigenPro-tensorflow | kernels.py | Python | mit | 1,722 | [
"Gaussian"
] | 26d6133ff04d2bf66d2b1a426bed20bf92d64bbea1b5246eb20b812b65b42c47 |
"""
Functional tests for the API.
This test suite will work fine against a standard JPER install on the local machine with the default accounts.
If you want to run it in a different environment you will need to modify some of the constants used in this test.
"""
import requests, json, os
from octopus.modules.es.test... | JiscPER/jper | service/tests/functional/test_api.py | Python | apache-2.0 | 20,195 | [
"Octopus"
] | 37d558f52b5f1523cf1f8576d93d1a2ae9717d8aaf23960886d60fdb26cb30b3 |
# Copyright (c) 2012, James Hensman
# Licensed under the BSD 3-clause license (see LICENSE.txt)
from posterior import Posterior
from ...util.linalg import jitchol, tdot, dtrtrs, dpotri, pdinv
from ...util import diag
import numpy as np
from . import LatentFunctionInference
log_2_pi = np.log(2*np.pi)
class FITC(Latent... | TianpeiLuke/GPy | GPy/inference/latent_function_inference/fitc.py | Python | bsd-3-clause | 3,029 | [
"Gaussian"
] | baf90730cde5f10fc86ab154454c8390886f750f0f0afb0ef3507e9512eca6f2 |
from django.conf.urls import url
from crystal_dashboard.dashboards.crystal.filters.filters import views
urlpatterns = [
url(r'^upload_storlet/$', views.UploadStorletView.as_view(), name='upload_storlet'),
url(r'^upload_native/$', views.UploadNativeView.as_view(), name='upload_native'),
url(r'^download/(?P<... | Crystal-SDS/dashboard | crystal_dashboard/dashboards/crystal/filters/filters/urls.py | Python | gpl-3.0 | 601 | [
"CRYSTAL"
] | 1009e9908cf025b1871610ae93ff84839423a16b21e80259413ff898fa72e041 |
"""Fallaxy (ansible-galaxy) plugin for integration tests."""
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import os
import uuid
from . import (
CloudProvider,
CloudEnvironment,
CloudEnvironmentConfig,
)
from ..util import (
find_executable,
display,
)
f... | roadmapper/ansible | test/lib/ansible_test/_internal/cloud/fallaxy.py | Python | gpl-3.0 | 5,719 | [
"Galaxy"
] | 5db929e1c9c46c226371738f07bfebc77bd36e03e67c50f212f4a33d6f033368 |
from __future__ import absolute_import
input_name = '../examples/navier_stokes/stokes_slip_bc_penalty.py'
output_name = 'test_stokes_slip_bc_penalty.vtk'
from tests_basic import TestInput
class Test(TestInput):
pass
| lokik/sfepy | tests/test_input_stokes_slip_bc_penalty.py | Python | bsd-3-clause | 221 | [
"VTK"
] | 009099089e861f35f8910881d3e798d925fc7c5f28fa9f55f7cad8f952a0d90b |
# Copyright (c) 2015, 2014 Computational Molecular Biology Group, Free University
# Berlin, 14195 Berlin, Germany.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without modification,
# are permitted provided that the following conditions are met:
#
# * Redistributions of source ... | trendelkampschroer/PyEMMA | pyemma/coordinates/data/featurizer.py | Python | bsd-2-clause | 52,290 | [
"MDTraj"
] | 002dcccaf8d175e0615b9cfdc8eb1cd1ca3722ebb322aa9a9274f08945f846fe |
"""Diffusion maps module.
This module implements the diffusion maps method for dimensionality
reduction, as introduced in:
Coifman, R. R., & Lafon, S. (2006). Diffusion maps. Applied and Computational
Harmonic Analysis, 21(1), 5–30. DOI:10.1016/j.acha.2006.04.006
"""
__all__ = ['BaseDiffusionMaps', 'SparseDiffusion... | jmbr/diffusion-maps | diffusion_maps/diffusion_maps.py | Python | mit | 16,572 | [
"Gaussian"
] | 50e10f2e4ff1fd6c50bde8aab13fb3fcf55f9d9aa8ea3d3dba64e67b2d60d88f |
# Portions Copyright (c) Facebook, Inc. and its affiliates.
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2.
# posix.py - Posix utility function implementations for Mercurial
#
# Copyright 2005-2009 Matt Mackall <mpm@selenic.com> and others
#
# This s... | facebookexperimental/eden | eden/hg-server/edenscm/mercurial/posix.py | Python | gpl-2.0 | 36,496 | [
"FEFF"
] | 20cda9002004a60e481d1f5228eff005cb17dbb5d08cd1d37399cf557237efe0 |
# Copyright 2016, The James Hutton Insitute
# Author: Leighton Pritchard
#
# This code is part of the pyani package, and is governed by its licence.
# Please see the LICENSE file that should have been included as part of
# this package.
"""Code to support pyani."""
import pandas as pd
from . import pyani_config
# C... | peterjc/pyani | pyani/pyani_tools.py | Python | mit | 5,655 | [
"BLAST"
] | 9aac439f1559c1d42352f4f02bfbf15adce08ac967a30d1f15c844c52b50e18d |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | tiagocardosos/stoq | stoqlib/gui/test/test_fiscalsearch.py | Python | gpl-2.0 | 2,879 | [
"VisIt"
] | aae9bafb290ec78de65eb4549b46c45b2c7b09cb9bc209222ad59798b231f77b |
#! /usr/bin/env python
"""
Library of functions required for raster warping in memory or on disk
The guts of warptool.py
"""
"""
todo:
Much better type checking
Implement multiprocessing!
Proper vdatum tags in geotiff header
filename preservation
Instead of doing the 'first' stuff, check actual values before writing... | dshean/pygeotools | pygeotools/lib/warplib.py | Python | mit | 20,962 | [
"Gaussian"
] | bf3493a4fb63815ad326ed58135305903d9c1dc841e60d95fc5f62978eab84f0 |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft = python sts = 4 ts = 4 sw = 4 et:
"""ANTS Apply Transforms interface
Change directory to provide relative paths for doctests
>>> import os
>>> filepath = os.path.dirname( os.path.realpath( __file__ ) )
>>> datadir = os.... | mick-d/nipype_source | nipype/interfaces/ants/resampling.py | Python | bsd-3-clause | 16,425 | [
"Gaussian"
] | 50922e8751f173b9ebbd9561bbd8dcd417fb6995861e613b911fd61de730eda1 |
# Author: Travis Oliphant 2001
# Author: Nathan Woods 2013 (nquad &c)
import sys
import warnings
from functools import partial
from . import _quadpack
import numpy
from numpy import Inf
__all__ = ['quad', 'dblquad', 'tplquad', 'nquad', 'quad_explain',
'IntegrationWarning']
error = _quadpack.error
class ... | pizzathief/scipy | scipy/integrate/quadpack.py | Python | bsd-3-clause | 37,361 | [
"Gaussian"
] | d83ac67dc054707a95c407dfce860878cfda9ad57ec993fbf39d3a16dd6a6632 |
from tool_shed.base.twilltestcase import ShedTwillTestCase, common, os
import logging
log = logging.getLogger(__name__)
repository_name = 'filtering_1470'
repository_description = "Galaxy's filtering tool"
repository_long_description = "Long description of Galaxy's filtering tool"
category_name = 'Test 1470 - Updati... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/test/tool_shed/functional/test_1470_updating_installed_repositories.py | Python | gpl-3.0 | 7,770 | [
"Galaxy"
] | f46c7535cbab78a235f60af9f27fb5d9bdaff92bdba72dc3d1522081f730f37f |
"""A VTK XML file reader object.
"""
# Author: Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2005, Enthought, Inc.
# License: BSD Style.
# Standard library imports.
from os.path import basename
# Enthought library imports.
from traits.api import Instance, List, Str, Bool
from traitsui.api import View, G... | dmsurti/mayavi | mayavi/sources/vtk_xml_file_reader.py | Python | bsd-3-clause | 14,036 | [
"Mayavi",
"VTK"
] | 08e113c0d79ee00b54a22e31d3b07bb8a026fa3173c1bd9126ea746c34fd2c78 |
"""
===========================
Formaldehyde mm-line fitter
===========================
This is a formaldehyde 3_03-2_02 / 3_22-221 and 3_03-2_02/3_21-2_20 fitter.
It is based entirely on RADEX models.
This is the EWR fork of the fitter in pyspeckit.
"""
import numpy as np
import pyspeckit.spectrum.models.hyperfi... | low-sky/h2codumb | h2co_mm.py | Python | gpl-2.0 | 6,796 | [
"Gaussian"
] | 586e6105334ffcfc2d5b7225f8b0a5ab6ac7e38ec4c018b951caa81da7fb5cd0 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module provides classes for analyzing phase diagrams.
"""
from six.moves import zip
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2011, T... | migueldiascosta/pymatgen | pymatgen/phasediagram/pdanalyzer.py | Python | mit | 19,379 | [
"pymatgen"
] | 19fb20705b3434d653b613c892daff3e9a5dc3a62b9fb6f28027ad73564a9982 |
# -*- coding: utf-8 -*-
u"""SRW execution template.
:copyright: Copyright (c) 2015 RadiaSoft LLC. All Rights Reserved.
:license: http://www.apache.org/licenses/LICENSE-2.0.html
"""
from __future__ import absolute_import, division, print_function
from pykern import pkinspect
from pykern import pkio
from pykern.pkcolle... | mrakitin/sirepo | sirepo/template/srw.py | Python | apache-2.0 | 65,049 | [
"CRYSTAL"
] | f74b9d1b1d1624a232c03102b9d6b9fa7b3f64b900af74bc6f837110a66606c2 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/core/ui/printservicedialog.py | Python | gpl-2.0 | 8,789 | [
"Brian"
] | a8f086cb168f0a820da47c10d3d0acdd5bc805ea856d3f05ec0ebd1293bf54b9 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright 2011 by Pawel T. Jochym <pawel.jochym@ifj.edu.pl>
#
# This file is part of Elastic.
# Elastic is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation... | jochym/Elastic | parcalc/parcalc.py | Python | gpl-3.0 | 24,638 | [
"ASE",
"CRYSTAL",
"SIESTA",
"VASP"
] | 0c161f10339f8dfc20d24332dc022af5ea8fa6d6afcbd6ce4504545f382be44b |
""" POOL XML Catalog Class
This class handles simple XML-based File Catalog following the
POOL project schema. It presents a DIRAC generic File Catalog interface
although not complete and with several extensions
"""
from __future__ import print_function
__RCSID__ = "$Id$"
import os, xml.dom.minidom, types
... | fstagni/DIRAC | Resources/Catalog/PoolXMLCatalog.py | Python | gpl-3.0 | 11,135 | [
"DIRAC"
] | bbec1c258d9a4d8b55325c00447458b1ba24b7f9c406afe9cbc646a0ed2ddd92 |
# Copyright 2015 CERN. This software is distributed under the
# terms of the GNU General Public Licence version 3 (GPL Version 3),
# copied verbatim in the file LICENCE.md.
# In applying this licence, CERN does not waive the privileges and immunities
# granted to it by virtue of its status as an Intergovernment... | kiliakis/BLonD | __TEST_CASES/main_files/TC3_RFnoise.py | Python | gpl-3.0 | 5,956 | [
"Gaussian"
] | 50bcf280829423f9e344e0dc0be5ef2d736e0cd0b0cf0d5dafda85198f47e28f |
# Copyright 2009 by Peter Cock. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# This module is for reading and writing FASTQ and QUAL format files as
# SeqRecord objects, and... | NirBenTalLab/proorigami-cde-package | cde-root/usr/lib64/python2.4/site-packages/Bio/SeqIO/QualityIO.py | Python | mit | 74,587 | [
"Biopython"
] | 8aa8d8d5c572cc5c847bc0d0bdfb82d97f7694861ff3c5f366207a46a6077b45 |
# -*- coding: utf-8 -*-
import os
import re
import uuid
import urllib
import logging
import datetime
import urlparse
from collections import OrderedDict
import warnings
import pytz
from flask import request
from django.core.urlresolvers import reverse
from HTMLParser import HTMLParser
from modularodm import Q
from mo... | fabianvf/osf.io | website/project/model.py | Python | apache-2.0 | 106,953 | [
"VisIt"
] | 1471be284268b0d5293bc89bd7da69214559e096477a5e2abefecba6a73c6bf1 |
try:
from galaxy.jobs.runners.util.cli import (
CliInterface,
split_params
)
code_dir = 'lib'
except ImportError:
from pulsar.managers.util.cli import (
CliInterface,
split_params
)
code_dir = '.'
def get_shell(params):
cli_interface = CliInterface(code_dir=... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/jobs/runners/util/cli/factory.py | Python | gpl-3.0 | 429 | [
"Galaxy"
] | 49ec720ea61660a3321f8276e050ce9e7233efb2c10d57bb341780ff1df71918 |
#!/usr/bin/env python
'''
Anh Nguyen <anh.ng8@gmail.com>
2016
'''
import os, sys
os.environ['GLOG_minloglevel'] = '2' # suprress Caffe verbose prints
import settings
sys.path.insert(0, settings.caffe_root)
import caffe
import numpy as np
from numpy.linalg import norm
import scipy.misc, scipy.io
import argparse
i... | Evolving-AI-Lab/ppgn | sampling_caption.py | Python | mit | 9,371 | [
"NEURON"
] | 774827173cb3b0a6560402567c2db08365044c0835d2d7a73a57c99791e1dc83 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | psci2195/espresso-ffans | testsuite/python/minimize_energy.py | Python | gpl-3.0 | 3,574 | [
"ESPResSo"
] | de8aebc555a9558021d3ccc3c1ba91ee94f5e0c34f3d15c38d3161e874881e84 |
"""Module to interact with pyrvapi"""
__author__ = "Adam Simpkin & Felix Simkovic"
__date__ = "06 Oct 2017"
__version__ = "0.2"
import logging
import os
import pandas
import pyrvapi
import subprocess
import sys
import uuid
from simbad.util import RvapiMetadata
from simbad.util import reference_manager
from simbad.ut... | rigdenlab/SIMBAD | simbad/util/pyrvapi_results.py | Python | bsd-3-clause | 42,330 | [
"CRYSTAL"
] | f3f5762cdc39d7444061d6c01cde80a58c431f5af5ccb9a502d6db2c93712437 |
#!/usr/bin/env python
########################################################################
# File : dirac_setup_site.py
# Author : Ricardo Graciani
########################################################################
"""
Initial installation and configuration of a new DIRAC server (DBs, Services, Agents, We... | ic-hep/DIRAC | src/DIRAC/Core/scripts/dirac_setup_site.py | Python | gpl-3.0 | 1,953 | [
"DIRAC"
] | 3937543647a963c4734801b266905ab3f826a40d198d154242d11a3108d96cb9 |
#pylint: disable=missing-docstring
####################################################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment ... | liuwenf/moose | python/MooseDocs/extensions/refs.py | Python | lgpl-2.1 | 5,964 | [
"MOOSE"
] | d39701886dc243b46c5cdf4be9f9beb2f73823d7bcb9d3bb077e862824b2d8ea |
# Copyright 2010-2017, The University of Melbourne
# Copyright 2010-2017, Brian May
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | brianmay/karaage | karaage/plugins/kgapplications/__init__.py | Python | gpl-3.0 | 1,625 | [
"Brian"
] | e3284a0ba44d40fcbe84d1cd5327d66605319bb888bf9ce2e4b5327b40ba7b19 |
# -*- coding: utf-8 -*-
"""Algorithms for spectral clustering"""
# Author: Gael Varoquaux gael.varoquaux@normalesup.org
# Brian Cheung
# Wei LI <kuantkid@gmail.com>
# License: BSD 3 clause
import warnings
import numpy as np
from ..base import BaseEstimator, ClusterMixin
from ..utils import check_rand... | vortex-ape/scikit-learn | sklearn/cluster/spectral.py | Python | bsd-3-clause | 19,852 | [
"Brian",
"Gaussian"
] | 6423b06872dbb0166fa6508119d82a27ca2f22988bc920d7058e37952bac2d64 |
#
# Post-processing script QE --> EPW
# 14/07/2015 - Samuel Ponce
#
from builtins import input
import numpy as np
import os
# Enter the number of irr. q-points
prefix = input('Enter the prefix used for PH calculations (e.g. diam)\n')
# Enter the number of irr. q-points
nqpt = input('Enter the number of irreducible q... | QEF/q-e_schrodinger | test-suite/epw_mob/pp.py | Python | gpl-2.0 | 974 | [
"EPW"
] | 365e2ef85960c069af6851728b6065ca05cc6bc6531e2976975a4161b605d01c |
# Copyright (c) 2003-2013 LOGILAB S.A. (Paris, FRANCE).
# Copyright (c) 2009-2010 Arista Networks, Inc.
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# ... | hpfem/agros2d | resources/python/pylint/checkers/base.py | Python | gpl-2.0 | 37,591 | [
"VisIt"
] | 1fc652dbad99a481c9f38ef78e423d9aa7c985dc61701986d64b198a02d5a6a0 |
""" PilotAgentsDB class is a front-end to the Pilot Agent Database.
This database keeps track of all the submitted grid pilot jobs.
It also registers the mapping of the DIRAC jobs to the pilot
agents.
Available methods are:
addPilotTQReference()
setPilotStatus()
deletePilot()
clearPilo... | Sbalbp/DIRAC | WorkloadManagementSystem/DB/PilotAgentsDB.py | Python | gpl-3.0 | 44,671 | [
"DIRAC"
] | 95a2709032a69e99abb74a6d8fc84f6b2525d22be12cd5a50d0e3f108110cd82 |
# Copyright (c) Charl P. Botha, TU Delft.
# All rights reserved.
# See COPYRIGHT for details.
"""
"""
import mutex
#########################################################################
class SchedulerException(Exception):
pass
class CyclesDetectedException(SchedulerException):
pass
################... | fvpolpeta/devide | scheduler.py | Python | bsd-3-clause | 28,360 | [
"VisIt"
] | 9d2a1e564461a18bab2507711e2dfffab01933b4a580f6d468c39bd584241f43 |
#===============================================================================
#
# LIL.py
#
# This file is part of ANNarchy.
#
# Copyright (C) 2016-2020 Julien Vitay <julien.vitay@gmail.com>,
# Helge Uelo Dinkelbach <helge.dinkelbach@gmail.com>
#
# This program is free software: you can redistrib... | vitay/ANNarchy | ANNarchy/generator/Projection/SingleThread/LIL.py | Python | gpl-2.0 | 35,737 | [
"NEURON"
] | 5bf395ed25513724776c4d5ef52c1cc1634218e2d383cb41d11d6dffbddb41fb |
###############################################################################
# Re-implementation of the ProcessPoolExecutor more robust to faults
#
# author: Thomas Moreau and Olivier Grisel
#
# adapted from concurrent/futures/process_pool_executor.py (17/02/2017)
# * Backport for python2.7/3.3,
# * Add an extra m... | joblib/joblib | joblib/externals/loky/process_executor.py | Python | bsd-3-clause | 48,538 | [
"Brian"
] | deb0c4cb72035ee6a9b8cb6648769bb604f5ef99bbbea6df356183f33c580f73 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | ashutoshvt/psi4 | psi4/share/psi4/databases/HTR40.py | Python | lgpl-3.0 | 41,501 | [
"Psi4"
] | 86dc73a35d13a8d8ab3a44fc8e7d48accee578f56d6eac7cc3b6eb0141fdfa26 |
#! compare MemJK and DiskJK
import psi4
import pytest
import numpy as np
import random
from .utils import *
@pytest.fixture(scope="module", params=["spherical", "cartesian"])
def build_system(request):
mol = psi4.geometry("""
O
H 1 1.00
H 1 1.00 2 103.1
""")
memory = 50000
puream = requ... | ashutoshvt/psi4 | tests/pytests/test_dfjk.py | Python | lgpl-3.0 | 1,922 | [
"Psi4"
] | f1f52a483f1e6ec82bb36fa96f170bf1555426ad2b9dd9c7d90176cac3f25d06 |
from gpaw.atom.generator2 import _generate
def derivatives(atoms):
"""Calculate derivatives of the energy with respect to PAW-setup
parameters."""
e00 = atoms.get_potential_energy()
allsetups = atoms.calc.wfs.setups.setups
parameters = {}
for setup in allsetups.values():
d = setup.d... | robwarm/gpaw-symm | gpaw/atom/derivatives.py | Python | gpl-3.0 | 2,441 | [
"GPAW"
] | cc1d3a4cdde414781581c62316348653a346eb145d81f84806a7648f63e0d30e |
'''
This file is used to report the amount of time elapsed, and how much remains.
Used like this::
progress = ProgressReporter()
progress.start()
for ...:
... do some work ...
progress.update(percentcomplete)
progress.finish()
It will give a progress report every 60 second... | DavidTingley/ephys-processing-pipeline | installation/klustaviewa-0.3.0/spikedetekt2/core/progressbar.py | Python | gpl-3.0 | 2,771 | [
"Brian"
] | e7a2439181659806e3ca882a3fe3e685f5f2e00273550c79714716d1497169fa |
import json
import os
import os.path as op
import time
from ..splunktacollectorlib.common import log as stulog
from ..splunktalib import kv_client as kvc
from ..splunktalib.common import util
def get_state_store(meta_configs,
appname,
collection_name="talib_states",
... | georgestarcher/TA-SyncKVStore | bin/ta_synckvstore/cloudconnectlib/splunktalib/state_store.py | Python | mit | 8,446 | [
"VisIt"
] | 8f33aa0b68f99c21962b0c27ce73bfffd1627bf71cef7f3cb7162f057a521078 |
#!/usr/bin/python
#
# Copyright 2008 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | kdlucas/pyrering | lib/scanscripts.py | Python | apache-2.0 | 14,556 | [
"VisIt"
] | 29aa83c456347710452c005b1d31204f4a4db182613bfedf1f296465e6ec3185 |
"""
@name: PyHouse/src/Certificates/_test/test_newcert.py
@author: D. Brian Kimmel
@contact: d.briankimmel@gmail.com
@copyright: (c) 2015-2017 by D. Brian Kimmel
@date: Created on Feb 24, 2015
@licencse: MIT License
@summary:
"""
__updated__ = '2017-01-20'
import unittest
class Test(unittest... | DBrianKimmel/PyHouse | Project/src/Certificates/test/test_newcert.py | Python | mit | 556 | [
"Brian"
] | cd1ee7909c91a52a6ce7b1d41e31cf3c0ba9510c1eccd0c6a82a872a3d3e36c4 |
import vtkAll as vtk
from vtkNumpy import addNumpyToVtk
from shallowCopy import shallowCopy
import numpy as np
class DebugData(object):
def __init__(self):
self.append = vtk.vtkAppendPolyData()
def write(self, filename):
writer = vtk.vtkXMLPolyDataWriter()
writer.SetInputConnection(s... | manuelli/director | src/python/director/debugVis.py | Python | bsd-3-clause | 7,562 | [
"VTK"
] | c2c9935860b3dd9715e70417e5962bfb689c9d8e4bad7634279d7f74985ca60b |
# Copyright (C) 2009 by Eric Talevich (eric.talevich@gmail.com)
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import sys
# Add path to Bio
sys.path.append('../..')
"""Utilities for handling, displa... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Phylo/_utils.py | Python | gpl-2.0 | 20,969 | [
"Biopython"
] | c9347a976e9b5bee16bc2aedbcb7f39d0857cab0f268ed5cb2f6166e40b4ba1e |
"""
galaxy.py
Copyright 2016 Brian Romanchuk
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writ... | brianr747/Simple4Xpygame | server/galaxy.py | Python | apache-2.0 | 7,504 | [
"Brian",
"Galaxy"
] | cb2a77080dfeb0dd9fce6d069f5cfd089bb51cb3c265e16b62918fd06953751c |
###############################
# This file is part of PyLaDa.
#
# Copyright (C) 2013 National Renewable Energy Lab
#
# PyLaDa is a high throughput computational platform for Physics. It aims to make it easier to
# submit large numbers of jobs on supercomputers. It provides a python interface to physical input,
# ... | pylada/pylada-light | tests/decorations/test_defects.py | Python | gpl-3.0 | 3,535 | [
"CRYSTAL",
"VASP"
] | 68fa94cd141b9b2e2750c3909c76137db0f4de808eb06b449ca87631d4c776fc |
from __future__ import unicode_literals
from __future__ import print_function
from __future__ import division
from __future__ import absolute_import
from future import standard_library
standard_library.install_aliases()
from builtins import *
import logging
import emission.core.wrapper.transition as ecwt
import emissio... | shankari/e-mission-server | emission/analysis/intake/segmentation/restart_checking.py | Python | bsd-3-clause | 5,341 | [
"VisIt"
] | 28c48f6916a9c5bf176880dfc1d6ab7283bf9e00d7e4284cafb22d97f9d8a3b9 |
# -*- coding: utf-8 -*-
'''
CuBIC is a statistical method for the detection of higher order of
correlations in parallel spike trains based on the analysis of the
cumulants of the population count.
Given a list sts of SpikeTrains, the analysis comprises the following
steps:
1) compute the population histogram (PSTH) wi... | espenhgn/elephant | elephant/cubic.py | Python | bsd-3-clause | 6,875 | [
"Gaussian"
] | 1f95dc2f052871628f755c5f79d59102bd8c438740c7d8ebe619a73aaf095972 |
#!/usr/bin/env python3
# SPDX-License-Identifier: BSD-3-Clause
# -*- coding: utf-8 -*-
# Copyright 2017 The Chromium OS Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSES/BSD-3-Clause.txt file.
"""Autosuspend udev rule generator
This script ... | ssahani/systemd | tools/chromiumos/gen_autosuspend_rules.py | Python | gpl-2.0 | 7,279 | [
"Octopus"
] | 42b046267d78146a73b21f7ff5a68a7a7d08c7380576715580b1567aa354b108 |
import numpy as np
from numpy.polynomial.polynomial import polyfit
mode_regex = r"""Y_l(?P<L>[0-9]+)_m(?P<M>[-+0-9]+)\.dat"""
def pick_Ch_mass(filename="Horizons.h5"):
"""Deduce the best Christodoulou mass by finding the statistical "mode" (after binning)."""
from h5py import File
from os.path import isd... | moble/scri | scri/extrapolation.py | Python | mit | 56,338 | [
"Psi4"
] | 187e2923391e9849d05d63416db75f2b9e85f547af9a4d6069334b58f359da84 |
# -*- coding: utf-8 -*-
import datetime
import json
import os
import stat
from django.conf import settings
from django.core.files.storage import default_storage as storage
from django.core import mail
from django.core.management import call_command
from django.core.urlresolvers import reverse
import mock
from nose.to... | Joergen/zamboni | mkt/webapps/tests/test_tasks.py | Python | bsd-3-clause | 24,398 | [
"exciting"
] | 5c8b1bb703b24e500203c4459f7a617e487c79b78af31859c7a6775b805b1644 |
#!/usr/local/bin/python -i
# preceeding line should have path for Python on your machine
# viz_pymol.py
# Purpose: viz running LAMMPS simulation via PyMol
# Syntax: viz_pymol.py in.lammps Nfreq Nsteps
# in.lammps = LAMMPS input script
# Nfreq = dump and viz shapshot every this many steps
# ... | val-github/lammps-dev | python/examples/viz_pymol.py | Python | gpl-2.0 | 1,876 | [
"LAMMPS",
"PyMOL"
] | 60dd5dfdb4dfdbca516bb5d7308bf9b0ad06230cd94628531c747e53271d6d36 |
import pytest
import altair.vegalite.v4 as alt
def geom_obj(geom):
class Geom(object):
pass
geom_obj = Geom()
setattr(geom_obj, "__geo_interface__", geom)
return geom_obj
# correct translation of Polygon geometry to Feature type
def test_geo_interface_polygon_feature():
geom = {
... | altair-viz/altair | altair/vegalite/v4/tests/test_geo_interface.py | Python | bsd-3-clause | 6,496 | [
"BWA"
] | f4ae18aad96374ca3d66a1bf5c4cb21cc98dede2d062243fc2f593241d6696e8 |
# ***** GPL LICENSE BLOCK *****
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed ... | Microvellum/Fluid-Designer | win64-vc/2.78/scripts/addons/io_export_dxf/__init__.py | Python | gpl-3.0 | 1,679 | [
"VisIt"
] | 80892ff3c8584d6bcc178e1ff4e0d66a6da3f07a677a4a4c7082de0975d17983 |
#!/usr/bin/env python
# Copyright 2011(c) The Ontario Institute for Cancer Research. All rights reserved.
#
# This program and the accompanying materials are made available under the
# terms of the GNU Public License v3.0.
#
# You should have received a copy of the GNU General Public License along with
# this program... | capsid/capsid-pipeline | capsid/subtraction.py | Python | gpl-3.0 | 18,660 | [
"pysam"
] | 6c01d41883e5ebd70c9a173bc9b3385e6148e675aade4389ae835c7ec6c66d2c |
#!/usr/bin/env python
"""Digest sequences from a fasta file in sequences of a specified length.
Usage:
%program <input_file> <fragment_length> <move> <output_file>
input_file: a fasta file
fragment_length: length of digested fragments
move: number of non-overlapping nucleotides between two consecutive fragments"... | wkh124/wkh124 | fasta_digest.py | Python | gpl-3.0 | 1,300 | [
"Biopython"
] | 90138986ca5f88679b69d8856d4e61d833ee7b4d53c8c372fba9c15fede2edd8 |
import numpy as np
from phonopy.file_IO import write_FORCE_CONSTANTS
from phonopy.structure.cells import Supercell
from phonopy.harmonic.force_constants import symmetrize_force_constants
class FCAnalyzerBase:
def __init__(self,
force_constants=None,
atoms=None,
a... | yuzie007/upho | upho/analysis/fc_analyzer_base.py | Python | mit | 2,377 | [
"phonopy"
] | b5fc3404386f9581d20386b316293f002a1a9cfa72ebe672d38fc8b115530702 |
#!/usr/bin/env python
"""
A class to represent and draw gene sets
"""
__author__ = "Adam Richards"
import os,csv,re
import numpy as np
import networkx as nx
import matplotlib as mpl
import matplotlib.pyplot as plt
from htsint.database import db_connect,Gene,Taxon,GoTerm
from htsint.blast import BlastMapper
try:
... | ajrichards/htsint | htsint/GeneSet.py | Python | bsd-3-clause | 18,200 | [
"BLAST"
] | 418d9f14beba9a67b834d5e5c465a1d4efc80d4234cea286b2159ae29507717b |
# (c) 2013-2016, Michael DeHaan <michael.dehaan@gmail.com>
# Stephen Fromm <sfromm@gmail.com>
# Brian Coca <briancoca+dev@gmail.com>
# Toshio Kuratomi <tkuratomi@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under t... | wenottingham/ansible | lib/ansible/plugins/action/assemble.py | Python | gpl-3.0 | 6,491 | [
"Brian"
] | f13269d108f69ff0b7769bfb251f9453f8112aee4a1010f6796568535aadfdad |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# @Author: Brian Cherinka, José Sánchez-Gallego, and Brett Andrews
# @Date: 2016-04-11
# @Filename: rss.py
# @License: BSD 3-clause (http://www.opensource.org/licenses/BSD-3-Clause)
#
# @Last modified by: José Sánchez-Gallego (gallegoj@uw.edu)
# @Last modified time: 2018-... | sdss/marvin | python/marvin/api/rss.py | Python | bsd-3-clause | 7,790 | [
"Brian"
] | 358aeb9bca46f1969110fbb9b4941a9267b0ec7036306bcec03faaa44374ddd1 |
# PyGISS: Misc. Python library
# Copyright (c) 2013-2016 by Elizabeth Fischer
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any... | citibeth/modele-control | lib/modele/accfile.py | Python | lgpl-2.1 | 9,575 | [
"NetCDF"
] | 3c99798dceee529b354cbc31be044af7214aa76d8f0c8e8d0133dd4a75cbc9e5 |
# Generated from DeclSpecLanguage.g4 by ANTLR 4.7
from antlr4 import *
# This class defines a complete generic visitor for a parse tree produced by DeclSpecLanguageParser.
class DeclSpecLanguageVisitor(ParseTreeVisitor):
# Visit a parse tree produced by DeclSpecLanguageParser#statement.
def visitStatement(se... | jacopoMauro/abs_deployer | decl_spec_lang/DeclSpecLanguageVisitor.py | Python | isc | 4,374 | [
"VisIt"
] | acd47054fa459e3d77c0003ed6ea0baccbfe20f3a1e5c7716a9d072431dd21a0 |
#!/usr/bin/env python
# ppserver.py
#
# Parallel Python Software: http://www.parallelpython.com
# Copyright (c) 2005-2009, Vitalii Vanovschi
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Re... | vesellov/bitdust.devel | parallelp/pp/ppserver.py | Python | agpl-3.0 | 12,096 | [
"VisIt"
] | cbff1a251d57a344a1fcc6f681891ea7896efe0328d42b8a2e1f12438e83806d |
from __future__ import (absolute_import, division, print_function)
from mantid.api import PythonAlgorithm, AlgorithmFactory, IMDHistoWorkspaceProperty, PropertyMode, WorkspaceProperty, Progress
from mantid.kernel import (Direction, EnabledWhenProperty, PropertyCriterion, Property, StringListValidator, FloatArrayBounded... | wdzhou/mantid | Framework/PythonInterface/plugins/algorithms/DeltaPDF3D.py | Python | gpl-3.0 | 15,205 | [
"Gaussian"
] | cae03e00aab70b88b0286465611e99146e74eb2028977c5299bbee3289b1beb2 |
"""
==========================================
Outlier detection with several methods.
==========================================
When the amount of contamination is known, this example illustrates three
different ways of performing :ref:`outlier_detection`:
- based on a robust estimator of covariance, which is assum... | BiaDarkia/scikit-learn | examples/covariance/plot_outlier_detection.py | Python | bsd-3-clause | 5,092 | [
"Gaussian"
] | 9673b1ff5927916f5a7e73f3082d86652bb9653b6b4ab6097a872a76a10cf0fc |
# -*- coding: utf-8 -*-
"""
Unit tests for instructor.api methods.
"""
import datetime
import ddt
import functools
import random
import pytz
import io
import json
import shutil
import tempfile
from urllib import quote
from django.conf import settings
from django.contrib.auth.models import User
from django.core import ... | waheedahmed/edx-platform | lms/djangoapps/instructor/tests/test_api.py | Python | agpl-3.0 | 222,641 | [
"VisIt"
] | c724057cdcdf1151a894167436f6e16b678b581c2030e614d1d726951f290df9 |
from __future__ import unicode_literals
from frappe import _
app_name = "erpnext"
app_title = "ERPNext"
app_publisher = "Frappe Technologies Pvt. Ltd."
app_description = """ERP made simple"""
app_icon = "fa fa-th"
app_color = "#e74c3c"
app_email = "info@erpnext.com"
app_license = "GNU General Public License (v3)"
sour... | ESS-LLP/erpnext | erpnext/hooks.py | Python | gpl-3.0 | 28,711 | [
"VisIt"
] | 6bd3398f004e4932cf19c7056d5356589da743ea10a11a88d6892dc671d61d50 |
#!/usr/bin/python
# resultsFile is a library which allows to read output files of quantum
# chemistry codes and write input files.
# Copyright (C) 2007 Anthony SCEMAMA
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published... | scemama/resultsFile | resultsFile/Modules/wfnFile.py | Python | gpl-2.0 | 14,222 | [
"Gaussian"
] | c2a7911212de7e67b8654e77719ab1585db3d2fe16f988577863c1cb0c4211ba |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import sys
import importlib
from .. import __version__
def module_info(module_name):
"""
Print information regarding a module, i.e version and install directory
Parameters
----------
module_name: string
the name of the module
""... | pierrepo/PBxplore | pbxplore/tests/__init__.py | Python | mit | 1,087 | [
"MDAnalysis"
] | 9fdf27354f5e56f0b84eb486e71f372020ba761a2b4ce86c27776a72738845af |
"""Simple test to check the VTK XML reader -- this is basically a copy
of test_contour.py with just the reader changed.
"""
# Author: Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2005-2008, Enthought, Inc.
# License: BSD Style.
# Standard library imports.
from os.path import abspath
from StringIO impor... | liulion/mayavi | integrationtests/mayavi/test_vtk_xml_reader.py | Python | bsd-3-clause | 1,044 | [
"Mayavi",
"VTK"
] | 76090cfc37eb072117abd2987742995a02a40ee30d00ae6bb84a52d3ef2b1c1b |
__RCSID__ = "$Id$"
from DIRAC.AccountingSystem.Client.Types.BaseAccountingType import BaseAccountingType
class Pilot(BaseAccountingType):
def __init__(self):
BaseAccountingType.__init__(self)
self.definitionKeyFields = [('User', 'VARCHAR(32)'),
('UserGroup', 'VARCHAR(32)'),... | andresailer/DIRAC | AccountingSystem/Client/Types/Pilot.py | Python | gpl-3.0 | 801 | [
"DIRAC"
] | 6ee2a451ac6cd157f6b64e3b076b95b511c6bffc5790cc64e50f7c85fa2f59d2 |
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