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#!/usr/bin/env python
# encoding: utf-8
"""
binary_tree_postorder.py
Created by Shengwei on 2014-06-30.
"""
# https://oj.leetcode.com/problems/binary-tree-postorder-traversal/
# tags: medium, tree, traversal, dfs
"""
Given a binary tree, return the postorder traversal of its nodes' values.
For example:
Given binary... | CodingVault/LeetCodeInPython | binary_tree_postorder.py | Python | apache-2.0 | 3,620 | [
"VisIt"
] | 5fcae5142cb1c38e37bbbdc7d1d69c7e6c688023ef161e324de20db9df60e5a7 |
# Copyright 2008-2014 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | userzimmermann/robotframework-python3 | src/robot/model/stats.py | Python | apache-2.0 | 6,698 | [
"VisIt"
] | 7daa23be9becdfbfad12492dece8aa1222addbe108b2a2e174f6f27295f1d241 |
# Copyright (c) 2016-2017, Matteo Cafasso
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# 1. Redistributions of source code must retain the above copyright notice,
# this list of conditions and ... | noxdafox/vminspect | vminspect/winreg.py | Python | bsd-3-clause | 6,628 | [
"VisIt"
] | 9abfdbc203fe6d84906c4f7cb3d3a239e6ce7c2ef3a4bf6422eab2f6edeac020 |
from googlexml import GoogleXML as google
from splinter import Browser
search_query = 'How much wood could a woodchuck chuck?'
with Browser() as browser:
browser.visit(google.search_url)
browser.fill('q', search_query)
button = browser.find_by_name('btnG') #TODO: Move btnG to GoogleXML
button.click() | SearchLightApp/SearchLight | code/account.py | Python | mit | 319 | [
"VisIt"
] | 99de7826916628212d178f6bb35f64b6688417c29c5ca8e45b5ad52fa15cb7eb |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkTexture(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.vtkTex... | nagyistoce/devide | modules/vtk_basic/vtkTexture.py | Python | bsd-3-clause | 462 | [
"VTK"
] | c0ecbeb965ee75b0bfc60079bc20c8dd1fa30c649a1a72380da13512821609f8 |
#!/usr/bin/env python
########################################################################
# $HeadURL$
########################################################################
"""
Change file owner
"""
from DIRAC.Core.Base import Script
from DIRAC import S_OK
class Params:
def __init__ ( self ):
self.recur... | calancha/COMDIRAC | Interfaces/scripts/dchown.py | Python | gpl-3.0 | 2,187 | [
"DIRAC"
] | 74d803f41d508a6f90c7f508191fb8f1af593acf8c1e81442d97827a359746da |
@mfunction("mu, sigma2")
def estimateGaussian(X):
# ESTIMATEGAUSSIAN This function estimates the parameters of a
# Gaussian distribution using the data in X
# [mu sigma2] = estimateGaussian(X),
# The input X is the dataset with each n-dimensional data point in one row
# The output is a... | gedman4b/MachineLearning | coursera/AnomolyDetection and RecommenderSystems/estimateGaussian.py | Python | gpl-3.0 | 973 | [
"Gaussian"
] | 5967f2fe9a3b439948bf54231052dab7a6f1743fbfb4a498d344c94a883a2978 |
#!/bin/env python
#############################################################################
##
## Copyright (C) 2010 Riverbank Computing Limited.
## Copyright (C) 2010 Nokia Corporation and/or its subsidiary(-ies).
## All rights reserved.
##
## This file is part of the examples of PyQt.
##
## $QT_BEGIN... | kerneltravel/zyj | data/connection.py | Python | gpl-3.0 | 6,246 | [
"exciting"
] | 7254c52086753a41177b905740b51eddeb7dbadf7c3058e0232191473c1e1f03 |
# Copyright (c) 2000-2008 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, o... | mattjmorrison/Pylint | test/unittest_pyreverse_writer.py | Python | gpl-2.0 | 2,708 | [
"VisIt"
] | 32fab2df8dd617c81382f21d36645669f27b861a41d7d5bfb1898f8b7f96ec24 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | zasdfgbnm/tensorflow | tensorflow/contrib/py2tf/pyct/compiler.py | Python | apache-2.0 | 2,385 | [
"VisIt"
] | 83986ebea2a33fb46db9a97f2fd0ea09b2a54977044413e0fe172729d9199d0b |
# A simple CLI runner for slurm that can be used when running Galaxy from a
# non-submit host and using a Slurm cluster.
from logging import getLogger
try:
from galaxy.model import Job
job_states = Job.states
except ImportError:
# Not in Galaxy, map Galaxy job states to Pulsar ones.
from pulsar.util im... | natefoo/pulsar | pulsar/managers/util/cli/job/lsf.py | Python | apache-2.0 | 4,842 | [
"Galaxy"
] | 1d7abc39dccbec6cc61f8b63dd745da02967c5937a9fb72e524b280901b1d2ed |
#!/usr/bin/env
"""
SS_Winds_NARR_hr.py
Compare NARR Winds with NCEP V2 (with Mooring Winds) for 6hr intervals. Uses 3hr NARR and 6hr NCEP
Note:
-----
SS data is in text format and lacking geolocation information
See Bond and Stabeno 1998 -
Analysis of Surface Winds in Shelikof Strait, Alaksa, Using Moore... | shaunwbell/FOCI_Analysis | ReanalysisRetreival_orig/SS_Winds/SS_Winds_NARR_hr.py | Python | mit | 24,088 | [
"NetCDF"
] | eb9bc6c52ecf53893e107b62ce5a835ddcadd5fabb9820cd3fd9e6fe108759d5 |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | lochiiconnectivity/libcloud | libcloud/common/google.py | Python | apache-2.0 | 29,480 | [
"VisIt"
] | 720167d0a97055d07938df147b0c93367d6ea4cff714e005ebd17b0602dfe8ed |
# -*- coding: utf-8 -*-
"""
OpenNFT is an integrated software package designed for neurofeedback training
OpenNFT is an integrated software package designed for neurofeedback training.
It constitutes the core technical framework for developments in this exciting new
field of neuroimaging. OpenNFT is based on best pra... | OpenNFT/OpenNFT | opennft/__init__.py | Python | gpl-3.0 | 1,026 | [
"exciting"
] | 21eb335d1aa065a1bda35700adbfba97580e279c13609622b695ae8532a6b937 |
'''
Module of all the controllers used in M-LOOP. The controllers, as the name suggests, control the interface to the experiment and all the learners employed to find optimal parameters.
'''
from __future__ import absolute_import, division, print_function
__metaclass__ = type
import datetime
from importlib import impo... | michaelhush/M-LOOP | mloop/controllers.py | Python | mit | 43,221 | [
"Gaussian"
] | 794ede0970b2152efdfe6d17aa9b662c4351ed7007d5192a2d01b34e4b72b2ef |
import numpy as np
import scipy.special as sps
def wixi(x):
""" Complex Error Function (Faddeeva/Voigt).
w(i*x) = exp(x**2) * ( 1-erf(x) )
This function is called by other functions within this module.
We are using the scipy.special.wofz module which calculates
w(z) = exp(-z**2) * ... | paulmueller/PyCorrFit | pycorrfit/models/MODEL_TIRF_gaussian_3D3D.py | Python | gpl-2.0 | 7,099 | [
"Gaussian"
] | a9967d011e65dd0d2ff3048b248828f0b6c96a173abff9d2e123bcc337aa209b |
#
# This implementation is derived from the ``concurrent.futures``
# module of Python 3.2, by Brian Quinlan, (C) 2011 the Python Software
# Foundation. See http://docs.python.org/3/license.html for more information.
import logging
import signal
import threading
import uuid
from itertools import islice
from contextlib ... | ASinanSaglam/westpa | src/westpa/work_managers/core.py | Python | gpl-3.0 | 15,025 | [
"Brian"
] | 22fbeff5bd601c6a86ebbe7d42082dbb6984f1d08b344a0915d7593b9a199538 |
# Copyright (C) 2009 by Eric Talevich (eric.talevich@gmail.com)
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Base classes for Bio.Phylo objects.
All object representations for phylogenetic tree... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/Phylo/BaseTree.py | Python | gpl-2.0 | 34,923 | [
"Biopython",
"Octopus"
] | adae7a58f8276c9667f3fc708152f9489042baa368d90f1b03c4280b36ae60e5 |
"""
This is a test implementation of Wizbit sync using mock objects.
The first phases uses a Breadth First Search on the mock DAG to exchange
a list of SHA1's with another mock DAG. When we encounter a commit that is
in both DAG's, the system knows it no longer has to visit parents of that
commit.
The number of SHA1'... | wizbit-archive/wizbit | design/bfs_sha1_exchange.py | Python | lgpl-2.1 | 7,469 | [
"VisIt"
] | 093fa7b015dec209a798150156c63058b2d8aacaaa07ed9cd394f59fff986eb6 |
#Copyright 2009 Almero Gouws, <14366037@sun.ac.za>
"""
This module functions used to implement a Depth-first search on a graph.
The functions contained in this module are:
'dfs': Performs a depth first search on a graph.
'dfs_visit': Performs a depth first search visit on a node in a graph.
"""
__doc... | bhrzslm/uncertainty-reasoning | my_engine/others/GrMPy/lib/GrMPy/dfs.py | Python | mit | 2,768 | [
"VisIt"
] | ea36fb2925a341cfaab6bac2b1a2053f9cc1209c576ea041e102008cebfac369 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/modules/network/avi/avi_ipamdnsproviderprofile.py | Python | bsd-3-clause | 5,006 | [
"VisIt"
] | 2d362aad8d137c7fac2059a3440d57cffb8c38440c67b3e5bd7837f87514ea84 |
#
#-*- coding:utf-8 -*-
"""
Gentoo-keys - actionbase.py
Base api interface module
@copyright: 2012-2015 by Brian Dolbec <dol-sen@gentoo.org>
@license: GNU GPL2, see COPYING for details.
"""
from __future__ import print_function
import os
import sys
if sys.version_info[0] >= 3:
_unicode = str
e... | gentoo/gentoo-keys | gkeys/gkeys/actionbase.py | Python | gpl-2.0 | 2,709 | [
"Brian"
] | a699accf9418ba19b3070568b1c8bb324a8f74f11c508d9ba63e90faf737402f |
import abc
from typing import List
from data.variable_list import VariableList
class Data(metaclass=abc.ABCMeta):
"""Abstract base class for data access."""
def __init__(self, url: str) -> None:
self.url: str = url
self.interp: str = "gaussian"
self.radius: int = 25000 # radius in m... | DFO-Ocean-Navigator/Ocean-Data-Map-Project | data/data.py | Python | gpl-3.0 | 962 | [
"Gaussian"
] | 3f9ac507b9190d82b3ff57a588ce01dd0ea79a5814a9eec7126e11ce838b1180 |
#!/usr/bin/env python
########################################################################
# $HeadURL$
########################################################################
__RCSID__ = "$Id$"
from DIRAC.Core.Base import Script
Script.setUsageMessage( """
Returns the LFN matching given GUIDs
Usage:
%s <GUIDs... | coberger/DIRAC | DataManagementSystem/scripts/dirac-dms-resolve-guid.py | Python | gpl-3.0 | 1,145 | [
"DIRAC"
] | 722c6cf45db1b6bcc7597b6d0b9a158316a79641d47793e93dfddba057489651 |
#* This file is part of Zapdos, an open-source
#* application for the simulation of plasmas
#* https://github.com/shannon-lab/zapdos
#*
#* Zapdos is powered by the MOOSE Framework
#* https://www.mooseframework.org
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.htm... | lindsayad/zapdos | problems/process_jac_matrix.py | Python | lgpl-2.1 | 1,592 | [
"MOOSE"
] | 490c970fd1b128143d4c784b2ab29746e5c99b4d03f7f629612cea1287d330d6 |
#!/usr/bin/python
#Audio Tools, a module and set of tools for manipulating audio data
#Copyright (C) 2007-2012 Brian Langenberger
#This program is free software; you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation; either version 2... | R-a-dio/python-audio-tools | audiotools/aiff.py | Python | gpl-2.0 | 38,359 | [
"Brian"
] | b4e67040661c4823285576e531718593b8574061e3e24f454fcdef3763d0fb98 |
# -*- coding: utf-8 -*-
"""
Authors: Tim Hessels
UNESCO-IHE 2016
Contact: t.hessels@unesco-ihe.org
Repository: https://github.com/wateraccounting/wa
Module: Collect/CFSR
"""
# General modules
import pandas as pd
import os
import numpy as np
from netCDF4 import Dataset
import re
from joblib import Parallel, del... | wateraccounting/wa | Collect/CFSR/DataAccess_CFSR.py | Python | apache-2.0 | 8,868 | [
"NetCDF"
] | c7c2b2d8d2defe4b5df740630a870be610f8ebe8d22467fe0f2664b78ff3a8ee |
import numpy as np
from .control import model_setup
from .cp_confocal import twod, threed
from .cp_triplet import trip
from .cp_mix import double_pnum
# 3D + 2D + TT Gauß
# Model 6045
def CF_Gxyz_gauss_3D2DTT(parms, tau):
u""" Two-component three-dimensional free diffusion
with a Gaussian laser profile, ... | paulmueller/PyCorrFit | pycorrfit/models/model_confocal_tt_3d_2d.py | Python | gpl-2.0 | 5,176 | [
"Gaussian"
] | 12269ab36ff607273bca6c5d125a5760289d19002a3db2eac8e123085849c09d |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | psci2195/espresso-ffans | testsuite/scripts/tutorials/test_06-active_matter__rectification_geometry.py | Python | gpl-3.0 | 1,233 | [
"ESPResSo",
"VTK"
] | 49ef2a6f431c60f81a85e0adc63519fed2d4366d42737710ab474a1aab201282 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | ghchinoy/tensorflow | tensorflow/python/autograph/pyct/ast_util.py | Python | apache-2.0 | 10,780 | [
"VisIt"
] | e7f9ce82588ddbe5ca5c8b2f899124145cda7c0ceddaa619d578d66b135402a3 |
"""K-means clustering"""
# Authors: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Thomas Rueckstiess <ruecksti@in.tum.de>
# James Bergstra <james.bergstra@umontreal.ca>
# Jan Schlueter <scikit-learn@jan-schlueter.de>
# Nelle Varoquaux
# Peter Prettenhofer <peter.prettenh... | asnorkin/sentiment_analysis | site/lib/python2.7/site-packages/sklearn/cluster/k_means_.py | Python | mit | 59,557 | [
"Gaussian"
] | e9a98c242f63ebd182dca1052aefbad5430ba69e5a8771e4376aa9cca27c2871 |
import numpy as np
import ase
from pyemto.utilities import distort, rotation_matrix
from pyemto.examples.emto_input_generator import *
from pymatgen import Lattice
from ase.visualize import view
from ase.build import cut, make_supercell
import sys
find_primitive = False
make_supercell = None
coords_are_cartesian = Tru... | hpleva/pyemto | example_projects/fcc_elastic_constants/input_scripts/elastic_constants/input.py | Python | mit | 4,397 | [
"ASE",
"pymatgen"
] | 05b3cea72a7b1aeb2edd615bf20d4f001fee352d00f4371d4aee5bd292442a01 |
"""Playing around with a more performant implementation of t-SNE."""
import logging
import pickle
from pymatgen import MPRester
from tsne import bh_sne
from plot_tsne import plot_tsne
from vectorize_material import vectorize_random
# Set up streaming log to console with formatting
_log = logging.getLogger('neigh_p... | mp-interns/eratosthenes | neigh/alt/neigh_perf.py | Python | bsd-2-clause | 2,148 | [
"pymatgen"
] | e3c783f06573d46784411429c6c60e977c8d81ba1311eaa101b71de41b622296 |
import os
import unittest
from pymatgen.entries.correction_calculator import CorrectionCalculator
from pymatgen.util.testing import PymatgenTest
class CorrectionCalculatorTest(unittest.TestCase):
def setUp(self):
self.normal_corrections = {
"oxide": (-0.74, 0.0017),
"peroxide": (... | davidwaroquiers/pymatgen | pymatgen/entries/tests/test_correction_calculator.py | Python | mit | 4,936 | [
"pymatgen"
] | 28b75cf84f0a37d275eeaa1d1284f6a358a8d8b11a4ed32e9a560700413c753f |
import string
import random
import inspect
import visitor
import astnode as ast
from codegen import calvin_astgen, calvin_components, query, PortlistRewrite #, ResolvePortRefs
from parser import calvin_parse
from calvin.actorstore.store import DocumentationStore
_docstore = DocumentationStore()
def _refname(name):
... | EricssonResearch/calvin-base | calvin/csparser/visualize.py | Python | apache-2.0 | 11,292 | [
"VisIt"
] | 5bdf7f57390c4816d63fa5d420f89368a95fc8693a72624aec4fe356281848ee |
#-*- coding:utf-8 -*-
"""
Gentoo-keys - actions.py
Primary api interface module
@copyright: 2012-2015 by Brian Dolbec <dol-sen@gentoo.org>
@copyright: 2014-2015 by Pavlos Ratis <dastergon@gentoo.org>
@license: GNU GPL2, see COPYING for details.
"""
from __future__ import print_function
import ... | gentoo/gentoo-keys | gkeys/gkeys/actions.py | Python | gpl-2.0 | 46,439 | [
"Brian"
] | 4ff42f05014aa34ab637052a6cbb90c3a617816baca81313e4ef9a3aefacefc3 |
#!/usr/local/bin/python
import argparse
_help = """
Converts a minirepro taken with GPDB5 or earlier for use with GPDB 6 and later
"""
# Description:
#
# Usage: ./convert_minirepro_5_to_6.py my_minirepro
# creates my_minirepro_6X file
#
# GPDB6 added a new field to pg_statistic, making minirepros taken with GPDB5
#... | 50wu/gpdb | src/backend/gporca/scripts/convert_minirepro_5_to_6.py | Python | apache-2.0 | 2,836 | [
"ORCA"
] | 91f06ff6ebcd6b6a3bb758ac1da2e530990a38b360812366d9c5ecbdeabb3863 |
###############################################################################
# ilastik: interactive learning and segmentation toolkit
#
# Copyright (C) 2011-2014, the ilastik developers
# <team@ilastik.org>
#
# This program is free software; you can redistribute it and/or
# mod... | ilastikdev/ilastik | ilastik/applets/pixelClassification/pixelClassificationGui.py | Python | gpl-3.0 | 36,506 | [
"Gaussian"
] | 35e5be22c5fecf769cfffd787cff723de4da65e0e917540465b2c1e46d733223 |
#!/usr/bin/env python32
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lg... | nuclear-wizard/moose | modules/porous_flow/examples/tidal/atm_tides_open_hole.py | Python | lgpl-2.1 | 1,682 | [
"MOOSE"
] | 64cb53f2bf1843153df94e8f571cdc5dabbd49791abbb051b93ec4186de3b89c |
#!/usr/bin/env python3
"""
Copyright 2020 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 ... | pwillworth/galaxyharvester | html/getSpawnNames.py | Python | gpl-3.0 | 2,041 | [
"Galaxy"
] | 394ea8a33e5854c5fb69678e70aac84b716938f9f7544ec5b972fdfb8c23117c |
'''
Created on 2013-05-27
@author: brian
'''
from pygame.color import THECOLORS
from random import randint
from projectiles import Star
class HealBolt(object):
range = 5
damage = 2, 5
heal = True
name = "Heal Bolt"
icon = "healbolt"
cooldown = 0
def __init__(self, caster, location, item):
self.item = it... | Greymerk/python-rpg | src/abilities/healbolt.py | Python | gpl-3.0 | 1,661 | [
"Brian"
] | 3924d5f6cfe636ea5b236f73271064ee05c2bebf36992583c641edce4f8aab2a |
WORDS = (
'Aaron',
'Abbey',
'Abbie',
'Abby',
'Abigail',
'Ada',
'Adah',
'Adaline',
'Adam',
'Addie',
'Adela',
'Adelaida',
'Adelaide',
'Adele',
'Adelia',
'Adelina',
'Adeline',
'Adell',
'Adella',
'Adelle',
'Adena',
'Adina',
'Adria',
'Adrian',
'Adriana',
'Adriane',
'Adrianna',
'Adrianne',
'Adrie... | geradcoles/random-name | randomname/lists/names_female.py | Python | apache-2.0 | 47,154 | [
"Amber",
"Brian",
"CRYSTAL"
] | 3cd255220799362d1c4b907d4163926fe01da2809631a095fd5b193479071978 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
r"""
A collection of functions for creating k-points input for different
first-principles codes.
All functions have the same calling structure as :func:`prototype`.
"""
import decorator
import numpy as np
from fsc.export import export
@export
def prototype(kpt):
r""... | Z2PackDev/Z2Pack | z2pack/fp/kpoint.py | Python | gpl-3.0 | 6,448 | [
"ABINIT",
"CRYSTAL",
"Quantum ESPRESSO",
"VASP",
"Wannier90"
] | d0c8040020ae4c36dac887646ef6d9a4110f454d075849b8f26df3d1600da9fe |
#!/usr/bin/env python
"""This script tests a FABM configuration (fabm.yaml) by reading the value of
the model state and environmental dependencies from one or more files (e.g.,
outputs of a 3D model), and then evaluating the model's rate of change for that
state and environment. The absolute and relative rates of chang... | hofmeist/fabm-ihf | testcases/python/fabm_evaluate.py | Python | gpl-2.0 | 8,822 | [
"NetCDF"
] | d3f264fa12db91d97962c0227e735162cc5d499c096ab48e818ee2859743a7eb |
from Logger import initLogger
from Pipeline import *
from OutputDir import mkOutputDir
from Options import getConfig
from sys import exit
options = getOptions()
initLogger(options['logging'])
reference = options['reference']
sequences = options['sequences']
if len(sequences == 0):
exit('At least one sequence fil... | bjpop/ngs-pipeline | src/python/Sequential.py | Python | bsd-3-clause | 1,502 | [
"BWA"
] | c4eca3c0c85499e7986532d0dc59feeac3910d4f4e4f385e388d48d8ce8f5685 |
from jinja2.ext import Extension
import os
import pyjade.runtime
from pyjade import Compiler as _Compiler
from pyjade.runtime import attrs as _attrs, iteration
from jinja2 import Markup
from jinja2.runtime import Undefined
from pyjade.utils import process
ATTRS_FUNC = '__pyjade_attrs'
ITER_FUNC = '__pyjade_iter'
def... | syrusakbary/pyjade | pyjade/ext/jinja.py | Python | mit | 4,573 | [
"VisIt"
] | eb26f14b3d9c30978f0a7f5682785cec9b7bb7949f9fb9905e68556619f1169d |
"""Builds the CIFAR-10 network.
Summary of available functions:
# Compute input images and labels for training. If you would like to run
# evaluations, use input() instead.
inputs, labels = distorted_inputs()
# Compute inference on the model inputs to make a prediction.
predictions = inference(inputs)
# Compu... | brodyh/tensorflow | tensorflow/models/image/cifar10/cifar10.py | Python | apache-2.0 | 17,896 | [
"Gaussian"
] | 2d2b3dc1df2ab4fd71e0225b08c45569bd31c25b4e34522b18de59caea714e6c |
# -*- coding: utf-8 -*-
"""
Acceptance tests for Video.
"""
import os
from ddt import ddt, unpack, data
from mock import patch
from nose.plugins.attrib import attr
from unittest import skipIf, skip
from selenium.webdriver.common.by import By
from selenium.webdriver.common.action_chains import ActionChains
from common... | prarthitm/edxplatform | common/test/acceptance/tests/video/test_video_module.py | Python | agpl-3.0 | 51,462 | [
"VisIt"
] | b12220e91e29df3671dced238485afdd61d2aeefb1ee122535c157dc94a2e008 |
#!/usr/bin/env python3
import torch
from ..distributions import Delta
from ._variational_distribution import _VariationalDistribution
class DeltaVariationalDistribution(_VariationalDistribution):
"""
This :obj:`~gpytorch.variational._VariationalDistribution` object replaces a variational distribution
wi... | jrg365/gpytorch | gpytorch/variational/delta_variational_distribution.py | Python | mit | 1,670 | [
"Gaussian"
] | 3aeebd4865b0d36070865e9abad37d0b1b2d31494353dd895f1388598be11525 |
########################################################################
# File : BOINCComputingElement.py
# Author : J.Wu
########################################################################
""" BOINC Computing Element
"""
from __future__ import print_function
from __future__ import absolute_import
from __futu... | yujikato/DIRAC | src/DIRAC/Resources/Computing/BOINCComputingElement.py | Python | gpl-3.0 | 13,087 | [
"DIRAC"
] | 0f8e0398f6b03baf1ac45e769ecc5fb30067a0699b6140e9735251c8e0de1b6e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import rdkit
from rdkit.Chem import AllChem
from rdkit import DataStructs
__license__ = "X11"
METADATA = {
"id": "method_rdkit_ecfc8_tanimoto",
"representation": "ecfc8",
"similarity": "tanimoto"
}
def _compute_fingerprint(molecule):
return AllChem.GetM... | skodapetr/lbvs-environment | methods/ecfc/ecfc8_tanimoto.py | Python | mit | 1,365 | [
"RDKit"
] | b41789123c06ffd1eafa268853a784d7958bb3b3ffe2620953f9045eb7b1184c |
import logging
logging.basicConfig(level=logging.DEBUG)
import nengo
import nengo_spinnaker
import numpy as np
def test_probe_ensemble_spikes():
with nengo.Network("Test Network") as network:
a = nengo.Node(lambda t: -1.0 if t > 1.0 else 1.0)
# Create a 2 neuron ensemble with opposing encoders
... | project-rig/nengo_spinnaker | regression-tests/test_spike_probing.py | Python | mit | 1,304 | [
"NEURON"
] | cdeb9a847377d523447e4fa353d1c7aab628fb3ea32135c55719a324d9aadc38 |
""" The FileCatalogClient is a class representing the client of the DIRAC File Catalog
"""
import os
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Tornado.Client.ClientSelector import TransferClientSelector as TransferClient
from DIRAC.ConfigurationSystem.Client.Helpers.Registry import getVOMSAttributeForGroup, get... | DIRACGrid/DIRAC | src/DIRAC/Resources/Catalog/FileCatalogClient.py | Python | gpl-3.0 | 25,531 | [
"DIRAC"
] | f47fbc872efe50e519b301f9343115021da9a757aba1e7ebba17b367ebcced92 |
# -*- coding: utf-8 -*-
import logging
import re
from django.apps import apps
from django.core.exceptions import ValidationError
from website.util import sanitize
logger = logging.getLogger(__name__)
def has_anonymous_link(node, auth):
"""check if the node is anonymous to the user
:param Node node: Node w... | aaxelb/osf.io | website/project/model.py | Python | apache-2.0 | 2,778 | [
"VisIt"
] | b21305baac55dd78b92de1e25fbe55149d7dd92104489e6fb23055b0e9afe4e1 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi4/psi4 | psi4/driver/p4util/solvers.py | Python | lgpl-3.0 | 37,813 | [
"Psi4"
] | 5b2d9596b9b47c225259436d16aa6d2e68bd83dc406430f3937ba2211525406e |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/view/controls/editors/fileeditor.py | Python | gpl-2.0 | 9,897 | [
"VisIt"
] | 74cce09bef7ba3a0bf47df01469bf33b67fd8eba2fc18f4a4ff3f348497f19d0 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General... | le9i0nx/ansible | lib/ansible/modules/network/avi/avi_webhook.py | Python | gpl-3.0 | 4,423 | [
"VisIt"
] | bb5ad11535ac9adeca56417986f55068d2a57d20a4ad3354cc279ea9581dce3d |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'Patient.name'
db.add_column('core_patient', 'name', self.gf('django.db.models.fields.CharF... | praekelt/txtalert | txtalert/core/migrations/0009_auto__add_field_patient_name__add_field_patient_surname__add_field_his.py | Python | gpl-3.0 | 14,885 | [
"VisIt"
] | 5ab902383d47b48978c8d82f0cf9ee17dbeb752715b87e8f46661a0ccd6ef87c |
"""
This file is part of canisrufus
Copyright (C) 2017 @maldevel
https://github.com/maldevel/canisrufus
canisrufus - A fully featured backdoor that uses Github as a C&C server
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public ... | maldevel/canisrufus | canisrufus.py | Python | gpl-3.0 | 16,368 | [
"VisIt"
] | e4dcb64721727b8f2ccc288bd0c489831fcd19f75ae26f64c27afb3f8a9564b6 |
import inspect
import os
import re
import subprocess
from functools import partial
from io import StringIO
from itertools import islice
from os import makedirs
from os.path import splitext, join, dirname, basename, relpath, normpath
from subprocess import run
import chemcoord as cc
import numpy as np
from datasize imp... | mcocdawc/chemopt | src/chemopt/interface/molcas.py | Python | lgpl-3.0 | 8,088 | [
"MOLCAS"
] | 82a70662a10ca8c36c4a296dc4594c5993e40dcdd2ea47af2a979c67f2a3ab36 |
# $HeadURL$
"""
Nova11
driver to nova v_1.1 endpoint using libcloud
"""
# File : Nova11.py
# Author : Victor Mendez ( vmendez.tic@gmail.com )
import os
import paramiko
import time
from libcloud import security
from libcloud.compute.types import Provider
from libcloud.compute.provide... | vmendez/VMDIRAC | WorkloadManagementSystem/Client/Nova11.py | Python | gpl-3.0 | 19,262 | [
"DIRAC"
] | be3997e641232bb04fc59ed695bdf90ccf5398675f1e3de3ba02676cfae22cd6 |
# Copyright (C) 2007, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import copy
import os, subprocess, shutil, tarfile
import urlparse, ftplib, httplib
from zeroinstall import SafeException
from zeroinstall.injector import model, qdom
from logging import info
release_status_file = os... | gfxmonk/0release | support.py | Python | lgpl-2.1 | 7,352 | [
"VisIt"
] | 815d0cb32bf2d5b32f9419cd3b446d1d0a8ea4ae3ccbd52a91906e4320727372 |
from django.db.models import Q
from dateutil.relativedelta import relativedelta
from edc_registration.models import RegisteredSubject
from edc_constants.constants import POS, NEG, UNK, IND
from td_maternal.models import AntenatalEnrollment, RapidTestResult, MaternalInterimIdcc
from django.core.exceptions import Valid... | botswana-harvard/tshilo-dikotla | td_maternal/classes/maternal_status_helper.py | Python | gpl-2.0 | 4,390 | [
"VisIt"
] | d057bcf456196d215293af3279bcc4d76e56ee8d4325d6710679d062deb7210d |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | daviddesancho/mdtraj | mdtraj/utils/unit/__init__.py | Python | lgpl-2.1 | 6,908 | [
"MDTraj",
"OpenMM",
"VisIt"
] | 887a692cf1bcf329150cf11563265176d39c101de051e8a7af51a20b56b9e491 |
# encoding: utf-8
"""A dict subclass that supports attribute style access.
Authors:
* Fernando Perez (original)
* Brian Granger (refactoring to a dict subclass)
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed... | maximsch2/SublimeIPythonNotebook | external/nbformat3/ipstruct.py | Python | gpl-3.0 | 11,879 | [
"Brian"
] | 2e02675f70394298657ed08862d2c6a897c5132cf310e63579788a47b3a8da13 |
##
## Biskit, a toolkit for the manipulation of macromolecular structures
## Copyright (C) 2004-2018 Raik Gruenberg
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 3 of the
... | graik/biskit | biskit/amberResidueLibrary.py | Python | gpl-3.0 | 8,496 | [
"Amber"
] | c240d14fd81d0973ce6e018e56a851c2fd7766163d66330bad1b4b2d15b58cbf |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/scf/uhf_symm.py | Python | apache-2.0 | 22,072 | [
"PySCF"
] | fab0daf108b21bb49b31d76d9e37e7d819eb8371761b0985ea8fa61b92cd325a |
import os
import vtkAll as vtk
from shallowCopy import shallowCopy
def readPolyData(filename, computeNormals=False):
ext = os.path.splitext(filename)[1].lower()
readers = {
'.vtp' : vtk.vtkXMLPolyDataReader,
'.vtk' : vtk.vtkPolyDataReader,
'.ply' : vtk.vtkPLYReader,
... | mitdrc/director | src/python/director/ioUtils.py | Python | bsd-3-clause | 3,976 | [
"VTK"
] | da648a4d343447741df7efffe10d4df33128786765c341a5151136754f66f8f6 |
'''
Recurrent Highway Networks
-------------------------------------------------------------------------------
Julian Georg Zilly | Rupesh Kumar Srivastava | Jan Koutnik | Jurgen Schmidhuber
https://arxiv.org/abs/1607.03474
This is an implementation of language modeling experiments
on text8 dataset as specified in the... | datalogai/recurrentshop | examples/recurrent_highway_networks.py | Python | mit | 5,919 | [
"VisIt"
] | 5359d7cc1347c8abeb09ed7f054dbfb9c224a46d46fdd693baa5e0f29efe5a0d |
from aiida import load_dbenv
load_dbenv()
from aiida.orm import Code, DataFactory
from pymatgen.io import vasp as vaspio
StructureData = DataFactory('structure')
ParameterData = DataFactory('parameter')
import numpy as np
codename = 'vasp541mpi@stern'
############################
# Define input parameters #
#####... | abelcarreras/aiida_extensions | plugins/launcher/launch_vasp_si.py | Python | mit | 4,007 | [
"VASP",
"pymatgen"
] | 59d26c319a468838055c58b8374ffd53c8559ca6e5e9520af4d0b8854770cc4b |
# Author: Travis Oliphant, 2002
#
# Further updates and enhancements by many SciPy developers.
#
from __future__ import division, print_function, absolute_import
import math
import warnings
from collections import namedtuple
import numpy as np
from numpy import (isscalar, r_, log, sum, around, unique, asarray,
... | piyush0609/scipy | scipy/stats/morestats.py | Python | bsd-3-clause | 87,801 | [
"Gaussian"
] | a3315540d88968cd788f2d227708554ae61b240d26b213c3e90e54ebc36a4575 |
# -*- coding: utf-8 -*-
#
# Cherokee-admin
#
# Authors:
# Alvaro Lopez Ortega <alvaro@alobbs.com>
#
# Copyright (C) 2001-2011 Alvaro Lopez Ortega
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of version 2 of the GNU General Public
# License as published by the Free S... | nuxleus/cherokee-webserver | admin/market/Install.py | Python | gpl-2.0 | 21,050 | [
"VisIt"
] | 7f3731d608fef7e0dde96fb7b743319f59d6207b8b553767e9606fc42ce05d80 |
__author__ = "Jose Diaz"
__copyright__ = "Copyright (C) 2015, Jose Diaz"
__license__ = "GPL v3.0"
__version__ = "1.0"
__revision__ = "18"
__date__ = "$02/04/2015 11:57:06 PM$"
__status__ = "Desarrollo"
__contact__ = "966403361"
__email__ = "jozz.18x@gmail.com"
import sys
from tkinter import *
from tkinte... | jozz68x/Simulador-Cisco | src/simulador.py | Python | gpl-3.0 | 46,868 | [
"FLEUR"
] | c34e797d375bc52ba14812e5011afaebd9a15e13eceb870e48fb26b799e23a38 |
#!/usr/bin/env python3
import os
import json
import sys
import time
import argparse
import multiprocessing
import pychemia
from pychemia.db import get_database
def safe_read_json(filename):
"""
Safely read a given filename, extract and returns the associated dictionary
"""
if not os.path.exists(filen... | MaterialsDiscovery/PyChemia | scripts/StructuralSearch.py | Python | mit | 7,911 | [
"ABINIT",
"Firefly"
] | 394109281cf0f753bde05143104650ddf3143da3a615fc68acf60886d717cd51 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | lothian/psi4 | psi4/driver/procrouting/dft/dh_functionals.py | Python | lgpl-3.0 | 18,989 | [
"Psi4"
] | 6cb702f2b0d88e65ae8ab0c0390480eaaca5f83ee09daba96edfeed0b1151474 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# iobase - wrapper to wrap local and dist io in one
# Copyright (C) 2003-2014 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General P... | heromod/migrid | mig/shared/iobase.py | Python | gpl-2.0 | 19,223 | [
"Brian"
] | 5147a3d16e7e980799da27a9d68effc95f81d114341c1c58c838e7d8a49ccf81 |
# Copyright 2007 Google Inc.
# Licensed to PSF under a Contributor Agreement.
"""Unittest for ipaddress module."""
import unittest
import re
import contextlib
import functools
import operator
import pickle
import ipaddress
import weakref
class BaseTestCase(unittest.TestCase):
# One big change in ipaddress ove... | batermj/algorithm-challenger | code-analysis/programming_anguage/python/source_codes/Python3.5.9/Python-3.5.9/Lib/test/test_ipaddress.py | Python | apache-2.0 | 87,188 | [
"FEFF"
] | 3d51ded7f3bdf58a0305fc3aa230983d4910380d6f610271271f5621dab5b48a |
# Orca
#
# Copyright 2004-2009 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | chrys87/orca-beep | src/orca/script.py | Python | lgpl-2.1 | 24,152 | [
"ORCA"
] | c63e8dcae8ee1dba32b0aac0c0d354bc1e75b291f8d46d183be93537b961a159 |
from datetime import datetime
from django.contrib.auth.decorators import login_required
from django.http import HttpResponse
from django.shortcuts import render
from registration.backends.simple.views import RegistrationView
from rango.forms import CategoryForm
from rango.forms import PageForm
# Importing category mo... | vaibhavsingh97/Rango | rango/views.py | Python | gpl-3.0 | 10,021 | [
"VisIt"
] | 5ff0c6517443a1ccf023d5b2a210676da47e35c7042facb39bd65f3e358999cd |
../../../../../../../share/pyshared/orca/scripts/apps/gnome-mud/script.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/gnome-mud/script.py | Python | gpl-3.0 | 73 | [
"ORCA"
] | 7b5eeab167d4dce1fd769b0d7203210e1add397a5078a6a596323271bb2ba52e |
# Created by John Travers, Robert Hetland, 2007
""" Test functions for rbf module """
from __future__ import division, print_function, absolute_import
import numpy as np
from numpy.testing import (assert_, assert_array_almost_equal,
assert_almost_equal)
from numpy import linspace, sin, rand... | mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/scipy/interpolate/tests/test_rbf.py | Python | mit | 4,505 | [
"Gaussian"
] | d591ab84e8faed12efeeda49f1acf9cfdfe9a7bc66cca6a3e4c50b8d412b13f1 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/plugins/bibles/lib/__init__.py | Python | gpl-2.0 | 18,655 | [
"Brian"
] | c2e4919e229a77597808bcb9ccc52d8414694a533423b7de94263b9fde27cf5b |
'''
hw4_3.py
Vogels-Abbott network
'''
from neuron import h, gui
import random
h.load_file("stdrun.hoc")
h.load_file("CNSutils.hoc")
# Fix the seed for random number generators
seed = 1
random.seed(seed)
r = h.Random(seed)
r.uniform(0,1)
# The simulation will run for 100 ms.
h.tstop = 200
# Variable step controll... | shhong/a310_cns_2017 | Assignment_4/hw4_3.py | Python | gpl-3.0 | 3,362 | [
"NEURON"
] | 864802b57b803f8570729e306ad274c3e12921910afb4df0f1e38772926f89c2 |
from __future__ import division, absolute_import, print_function
import os
import sys
import types
import re
from numpy.core.numerictypes import issubclass_, issubsctype, issubdtype
from numpy.core import ndarray, ufunc, asarray
__all__ = [
'issubclass_', 'issubsctype', 'issubdtype', 'deprecate',
'deprecate_... | NextThought/pypy-numpy | numpy/lib/utils.py | Python | bsd-3-clause | 37,308 | [
"VisIt"
] | f248d5e52c98f5624974aa91f69b40bed52fe2e4fe788d4e279608dff1154b81 |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, subprocess, sys, glob, string, optparse, subprocess
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','desc... | Robbe92/TiDAKeyboardControl | build.py | Python | lgpl-2.1 | 8,787 | [
"VisIt"
] | 54cda44d69486eba3c5bc47f3703a15551643f6cc167eb2b334e98823a52764e |
import os
import os.path
import sys
sys.path.insert(0, os.path.abspath('lib'))
from ansible.release import __version__, __author__
try:
from setuptools import setup, find_packages
except ImportError:
print("Ansible now needs setuptools in order to build. Install it using"
" your package manager (usua... | sonaht/ansible | setup.py | Python | gpl-3.0 | 3,863 | [
"Galaxy"
] | 85266fc391b5761c88d968174c224dbc80daf66dc7f8d77a25160b22ff6546a9 |
import matplotlib
import numpy as np
import scipy as sp
import matplotlib.pyplot as plt
import scipy.io
from sklearn.cross_decomposition import CCA
from orthAE import OrthdAE
# generate toy data for multi-view learning from paper "Factorized Latent Spaces with Structured Sparsity"
t = np.arange(-1, 1, 0.02)
x = np.... | tengerye/orthogonal-denoising-autoencoder | tensorflow/demo.py | Python | apache-2.0 | 2,335 | [
"Gaussian"
] | 130cd0e16080d2fe7b3149339dd31039f7668f65a7ee83e936f26d3d9837e9f8 |
from random import Random
#from time import time
from inspyred import ec
from inspyred.ec import terminators
from inspyred.ec import variators
from inspyred.ec import observers
from fitnessFunctions import fF,frange
#from fitnessFunctions import *
import sys
import inspyred
import logging
from scipy import optimize, ar... | vellamike/optimizer | optimizer/optimizerHandler.py | Python | lgpl-2.1 | 38,459 | [
"Gaussian"
] | 5b4a36a584ac5e3d165724ae822aa335d6927aa95d95092b1270d0dd16a573cb |
# -*- coding: utf-8 -*-
# coding=utf-8
# Copyright 2019 The SGNMT Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | ucam-smt/sgnmt | cam/sgnmt/decoding/core.py | Python | apache-2.0 | 43,307 | [
"MOE"
] | c3eeba4c98e86c716db1ef27607e8a248cfbf88852c83006c44c18ef21284e72 |
#
# ----------------------------------------------------------------------------------------------------
#
# Copyright (c) 2007, 2021, Oracle and/or its affiliates. All rights reserved.
# DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER.
#
# This code is free software; you can redistribute it and/or modify ... | graalvm/mx | mx.py | Python | gpl-2.0 | 772,837 | [
"VisIt"
] | ad0987d20f4484f496970d429fc4e7de116f47d0ca31e8ace1edd93e58902420 |
#!/usr/bin/env python
#import pyfits
from LCScommon import *
from pylab import *
import os
from astropy.table import Table
from astropy.io import fits
from astropy.io import ascii
import mystuff as my
import chary_elbaz_24um as chary
mingalaxysize_kpc=my.DA(clusterbiweightcenter['Hercules']/3.e5,h)*mingalaxysize
clas... | rfinn/LCS | paper1code/LCSReadmasterBaseNSA.py | Python | gpl-3.0 | 24,274 | [
"Galaxy"
] | 7ea4c2dfb964ef47c8bbff16ee4bd9c274f498a0d4c53583581d71b1044f2511 |
from __future__ import division
import copy
import new
import math
import multiprocessing as mp
import time
import timeit
import shutil
import json as ujson
from tempfile import mkdtemp
import copy_reg
import numpy as np
import os
import os.path
from megaradrp.core.recipe import MegaraBaseRecipe
from numina.core im... | Pica4x6/megaradrp | megaradrp/recipes/calibration/weights.py | Python | gpl-3.0 | 15,527 | [
"Gaussian"
] | e9d8f218a13864a52e4176cf58f8281bd1c5b315b4a0c26272c10bb45d8849d7 |
#!/usr/bin/env python
#
# Copyright (C) 2013-2017(H)
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, ei... | espressopp/espressopp | testsuite/AdResS/FreeEnergyCompensation/test_FreeEnergyCompensation.py | Python | gpl-3.0 | 6,877 | [
"ESPResSo"
] | 8404992e16da27dad59b0ce28534469bf913331b6a0e37c0fba3094b0de92953 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under th... | kain88-de/mdanalysis | package/MDAnalysis/coordinates/null.py | Python | gpl-2.0 | 1,925 | [
"MDAnalysis"
] | 1954c0f4137174443dff7e4e1dca81a69f7ebf4efb80768417f1f1db4eb007b5 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""Tests for the Opera browser history parsers."""
import unittest
from plaso.formatters import opera # pylint: disable=unused-import
from plaso.lib import timelib
from plaso.parsers import opera
from tests import test_lib as shared_test_lib
from tests.parsers import test_l... | dc3-plaso/plaso | tests/parsers/opera.py | Python | apache-2.0 | 3,317 | [
"VisIt"
] | dae6ccbe5d69f59b915d281795c2f8a69022829120bde7b36a271e6482ad9976 |
# ----------------------------------------------------------------------------
# Copyright 2015-2016 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apa... | Jokeren/neon | tests/test_gradient_mlp.py | Python | apache-2.0 | 2,955 | [
"Gaussian"
] | 4f65060399c742acd329a0e7af2865f65f9177e4c727f54b3674d9f7ec16249d |
import numpy
class Gaussian:
def __init__(self, magnitude, sigma, mu):
self.sigma = sigma
self.mu = mu
self.magnitude = magnitude / numpy.sqrt(numpy.pi*2*self.sigma**2)
def __call__(self, x):
return(self.magnitude*numpy.exp(-(x-self.mu)**2/(2*self.sigma**2)))
def __str__(s... | tsbischof/photon_correlation | python/photon_correlation/Gaussian.py | Python | bsd-3-clause | 443 | [
"Gaussian"
] | 30c0cac85d11de98dc59a24ae17f539bc89f3b4780dd12cdbfbd1bad405f6868 |
# -*- coding: utf-8 -*-
# -----------------------------------------------------------------------
# Copyright (c) 2009 Jendrik Seipp
#
# RedNotebook is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either vers... | pakesson/rednotebook | rednotebook/util/utils.py | Python | gpl-2.0 | 12,635 | [
"VisIt"
] | 344677ed47bef08f94df5c26ee5b620495907492e1a3e04dba4341a3ba451f31 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""This module defines an interface to CASTEP for
use by the ASE (Webpage: http://wiki.fysik.dtu.dk/ase)
Authors:
Max Hoffmann, max.hoffmann@ch.tum.de
Jörg Meyer, joerg.meyer@ch.tum.de
"""
__all__ = [
'Castep',
'CastepCell',
'CastepParam',
'create_... | alexei-matveev/ase-local | ase/calculators/castep.py | Python | gpl-2.0 | 81,101 | [
"ASE",
"CASTEP"
] | fa814c2c34c8e4996e85f8a3079cfc4edb3e1b22fbb5fa3a5d3237b3c6de768b |
# -*- coding: utf-8 -*-
"""
Acceptance tests for CMS Video Module.
"""
from nose.plugins.attrib import attr
from unittest import skipIf
from ...pages.studio.auto_auth import AutoAuthPage
from ...pages.studio.overview import CourseOutlinePage
from ...pages.studio.video.video import VideoComponentPage
from ...fixtures.c... | kuiwei/kuiwei | common/test/acceptance/tests/video/test_studio_video_module.py | Python | agpl-3.0 | 9,603 | [
"VisIt"
] | b09e3b4ce2cbb2b2f7b313c49ac088a40b167a82566cfa04e397aa72c0770853 |
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