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from Components.Converter.Converter import Converter
from Components.Element import cached
from enigma import eServiceCenter, eServiceReference, iServiceInformation, eDVBFrontendParametersSatellite, eDVBFrontendParametersCable
from Components.Converter.Poll import Poll
class ExtremeInfo(Poll, Converter):
TUNERINFO = ... | openatv/enigma2 | lib/python/Components/Converter/ExtremeInfo.py | Python | gpl-2.0 | 37,003 | [
"Galaxy"
] | 7f2ddb666c56650aa0bae169c414f9bbc8eece683f9e56dbfcd6af988ad0c24a |
# $Id$
#
# Created by Greg Landrum, July 2008
#
from rdkit import RDConfig
import os
import unittest
from rdkit import DataStructs, Chem
from rdkit.Avalon import pyAvalonTools
struchk_conf_path = os.path.join(RDConfig.RDDataDir, 'struchk', '')
struchk_log_path = ''
STRUCHK_INIT = '''-ta %(struchk_conf_path)scheckfgs.t... | rdkit/rdkit-orig | External/AvalonTools/Wrap/testAvalonTools.py | Python | bsd-3-clause | 4,992 | [
"RDKit"
] | 3ca30188956e0ee4698b8d2d1cf13c3a4853e9b75188284d7bc7611764f9d3a3 |
# -*- encoding:utf-8 -*-
import sys
import os
sys.path.append(os.path.join(os.path.dirname(__file__), '..'))
from docscrape import NumpyDocString, FunctionDoc, ClassDoc
from docscrape_sphinx import SphinxDocString, SphinxClassDoc
from nose.tools import *
doc_txt = '''\
numpy.multivariate_normal(mean, cov, shape=No... | daniorerio/trackpy | doc/sphinxext/tests/test_docscrape.py | Python | bsd-3-clause | 14,257 | [
"Gaussian"
] | d6091db3127b5cc972404978c536b0607d51e3f43504acdc94ee9328a5838148 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import unittest
import os
import json
import random
import numpy as np
import csv
import scipy.constants as const
from pymatgen.analysis.diffusion_analyzer im... | xhqu1981/pymatgen | pymatgen/analysis/tests/test_diffusion_analyzer.py | Python | mit | 13,392 | [
"pymatgen"
] | a0b038925c170b799aad830f24a13dfc6b47261d04d740da4fc1edd970fbf1cb |
"""
Test sample of Inverted Pendulum
"""
from PyMDP import *
import PyMDP_Utils as utils
import ensemble_ioc as eioc
#pendulum test
class PendulumDynSys(DynamicalSystem):
#parameters
m_ = 1
l_ = .5
b_ = .1
lc_ = .5
g_ = 9.81
dt_ = 0.01
sigma_ = 0.1
def __init__(self, dt=0.01):
... | navigator8972/ensemble_ioc | PyMDP_Pendulum.py | Python | bsd-2-clause | 24,231 | [
"Gaussian"
] | 5cdb0b625ef7ffdb6a1a4534c1059ad4caabdc7a93000306a91a3eb022c07dfa |
""" Author: Ning Guo <ceguo@connect.ust.hk>
run `mv footing.yade.gz 0.yade.gz`
to generate initial RVE packing
How to run this script:
sudo apt install python-escript
cd examples/FEMxDEM
export PYTHONPATH="/usr/lib/python-escript:../../py/FEMxDEM"
export LD_LIBRARY_PATH=/usr/lib/python-escript/... | yade/trunk | examples/FEMxDEM/footing.py | Python | gpl-2.0 | 4,235 | [
"VTK"
] | fe1ce7b663fea32384b6adfeb7152dfb82fe512279b614f07b5008297ec87cb6 |
#
# MMP (Multiscale Modeling Platform) - EU Project
# funded by FP7 under NMP-2013-1.4-1 call with Grant agreement no: 604279
#
# CIGS example: Quality factor calculation tool
#
# Copyright (C) 2014-2016
#
# Harmen Rooms
# (Solliance, TNO, The Netherlands)
#
# Ralph Altenfeld
# (Access e.V., Germany)
#
# Th... | mupif/mupif | obsolete/examples/Example17-micress-Xstream-local/TNO_Qfactor_v1_2.py | Python | lgpl-3.0 | 4,540 | [
"CRYSTAL"
] | 9fed7f07bd37d832c9c424037521dce0f1fff7206fd1b70f09f4224d705b4792 |
# makeCoords.py
from astropy import units as u
from astropy import coordinates
from astroquery.ned import Ned
from astroquery.irsa_dust import IrsaDust
from astropy.coordinates import Angle,ICRS,SkyCoord
from astropy.coordinates.name_resolve import NameResolveError
import math
import os.path
import sys
import itertool... | TateWalker/Galactic-Data | makeCoords.py | Python | apache-2.0 | 754 | [
"Galaxy"
] | 5c1e3e240e2390bf6b3403f1108522da785eb316e7bd48eb86e8d82d1a0f92f0 |
"""
This integration tests will perform basic operations on a storage element, depending on which protocols are available.
It creates a local hierarchy, and then tries to upload, download, remove, get metadata etc
Potential problems:
* it might seem a good idea to simply add tests for the old srm in it. It is not :-)
... | DIRACGrid/DIRAC | tests/Integration/Resources/Storage/Test_Resources_GFAL2StorageBase.py | Python | gpl-3.0 | 14,250 | [
"DIRAC"
] | 149d2a1fe5f93e107256eb377696900b7d9e82e6625cabdf3a3620a14b360770 |
#!/usr/local/sci/bin/python
# PYTHON2.7
#
# Author: Kate Willett
# Created: 24 January 2018 (based on IDL create_monthseriesJAN2015.pro 1 Feb 2013)
# Last update: 24 January 2018
# Location: /data/local/hadkw/HADCRUH2/UPDATE2017/PROGS/HADISDH_BUILD/
# GitHub: https://github.com/Kate-Willett/HadISDH_Build
# -----... | Kate-Willett/HadISDH_Build | CreateMonthSeriesfromHadISD.py | Python | cc0-1.0 | 80,912 | [
"NetCDF"
] | 33fa9fb2738b0cddb06861a75eabcec8f7aca8dec881a248e44dca7a17f0979a |
# !usr/bin/env python
# -*- coding: utf-8 -*-
#
# Licensed under a 3-clause BSD license.
#
# @Author: Brian Cherinka
# @Date: 2017-08-06 19:53:26
# @Last modified by: Brian Cherinka
# @Last Modified time: 2017-08-30 10:35:59
from __future__ import print_function, division, absolute_import
import pytest
import skim... | havok2063/SciScript-Python | python/sciserver/tests/test_skyserver.py | Python | apache-2.0 | 2,686 | [
"Brian"
] | 9e0108338e5782b2ad46194002a143b92a9255d4e77894c3adfe5dd0dc161100 |
"""The WaveBlocks Project
Function for plotting functions of the type f:I^2 -> C
with abs(f) as y-value and phase(f) as color code.
This function makes a 3D surface plot.
@author: R. Bourquin
@copyright: Copyright (C) 2010, 2011 R. Bourquin
@license: Modified BSD License
"""
from numpy import linspace, pi, squeeze, ... | WaveBlocks/WaveBlocks | src/WaveBlocks/Plot/surfcf.py | Python | bsd-3-clause | 1,892 | [
"Mayavi",
"VTK"
] | 83ccc142c416e7cd52ea509277b4117224812564cd2e08f72af17ca72086e121 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | frreiss/tensorflow-fred | tensorflow/python/tpu/device_assignment.py | Python | apache-2.0 | 21,547 | [
"VisIt"
] | 41f9d09e80f006a49c7854840805299f536cbd611e9642c6b6154378106dfa5b |
import os
import numpy as np
def manual(subject, xfmname, reference=None, **kwargs):
"""Open GUI for manually aligning a functional volume to the cortical surface for `subject`. This
creates a new transform called `xfm`. The name of a nibabel-readable file (e.g. nii) should be
supplied as `reference`. This... | smerdis/pycortex | cortex/align.py | Python | bsd-2-clause | 8,244 | [
"Mayavi"
] | bc47723d7dfd2820930a6b23cce80145a7ba8f0e6709f478167eac86d4251ae2 |
"""
DESCRIPTORS.TXTGREY: textural descriptors from grey-scale images.
@author: vlad
"""
from __future__ import (absolute_import, division, print_function, unicode_literals)
__version__ = 0.05
__author__ = 'Vlad Popovici'
__all__ = ['GaborDescriptor', 'LBPDescriptor', 'GLCMDescriptor', 'HOGDescriptor',
'His... | higex/qpath | descriptors/txtgrey.py | Python | mit | 28,559 | [
"Gaussian"
] | e37b9a60dbfafd78fb038e0c74e95fc60c40a4c5c981fb73464ca21cc06065a5 |
#
# vcr.py
# - Configures the environment for running the Viral Assembly (viral_assembly_pipeline.py) and VIGOR (VIGOR3.pl) pipelines (creating directory structure and installs software).
#
import os.path, re, mmap
from fabric.api import cd, env, hide, local, run, settings, sudo, task
from fabric.network import disc... | averagehat/cloudbiolinux | cloudbio/custom/vcr.py | Python | mit | 16,221 | [
"BLAST",
"BWA",
"Galaxy"
] | accba805552abf39efcf3f2685aa12d5c28aa5dcbf18671fef83fe24ca016370 |
import numpy as np
import matplotlib.pyplot as plot
import math
import multiprocessing
import matplotlib.cm as cm
class kernelPCA:
"""
KernelPCA class to define basic functionality.
I will present a simple example of Kernel PCA using Gaussians here. The example with try to reproduce the results
shown ... | jonanv/Data-Mining | kernelPCA_Gaussian.py | Python | gpl-3.0 | 9,370 | [
"Gaussian"
] | 520d6bc07c8664ba16145fb30d4d61daf09f5a5a0d8e4d1e4037c1971f44d958 |
# coding: utf-8
"""
MINDBODY Public API
No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501
OpenAPI spec version: v6
Generated by: https://github.com/swagger-api/swagger-codegen.git
"""
import pprint
import re # noqa: F401
impor... | mindbody/API-Examples | SDKs/Python/swagger_client/models/update_client_visit_response.py | Python | bsd-2-clause | 3,304 | [
"VisIt"
] | 5f95fce6edd59d25e13dc2917d61fed8a7f6df7e5f2490e6faf6c57aa345902b |
"""
inpaint.py: Methods for MNIST inpainting
"""
from __future__ import division
from __future__ import print_function
import vae
import tensorflow as tf
import numpy as np
import pickle
import scipy.special
import os
import sys
vp_path = os.path.abspath('../../')
if not vp_path in sys.path:
sys.path.append(vp_... | GAMPTeam/vampyre | demos/mlp/inpaint.py | Python | mit | 10,813 | [
"Gaussian"
] | 1cd84a5e17c5e3d19ebc5b9fcf4232ee9bf6205fd7566a963a792683c9d894c9 |
#! /usr/bin/env python
# Copyright (c) 2005 Robert L. Campbell
from pymol import cmd, stored
def fitting(obj1,select1,obj2,select2):
"""
DESCRIPTION
"fitting" allows the superpositioning of object1 onto object2 using
the atoms in selection1 and selection2 (side chains are ignored). The
residue names, residu... | spirit01/SAXS | fitting.py | Python | mit | 4,128 | [
"PyMOL"
] | e0b406f41d7fca95af6961b0e51c96173cd3c9de009d990b70801f2395760022 |
from gpaw.utilities import erf, cerf
# Mathematica says:
# z erf(z)
# 1 0.842701
# 3 0.999978
# I 0. + 1.65043 I
# 1 + I 1.31615 + 0.190453 I
# 0.3 + 3*I 1467.69 - 166.561 I
# 3 - 0.3*I 1.00001 - 0.0000228553 I
values = [
[ 1, 0.84270079295+0j],
[ 3, 0.9999... | qsnake/gpaw | gpaw/test/erf.py | Python | gpl-3.0 | 953 | [
"GPAW"
] | e4d086f719014db4173303078ad97567727c681ab4bb8407c9487a45df70fd24 |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding model 'AuthProfile'
db.create_table('core_authprofile', (
('id', self.gf('django.db.m... | praekelt/txtalert | txtalert/core/migrations/0008_auto__add_authprofile.py | Python | gpl-3.0 | 13,791 | [
"VisIt"
] | 687bdf75b5fa0fc02c335b7e0ee6cdf356c7443a2bad7bf419acc427227f5b39 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS.
"""
import json
from datetime import datetime, timedelta
from textwrap import dedent
import pytz
from common.test.acceptance.fixtures.course import CourseFixture, CourseUpdateDesc, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import Au... | philanthropy-u/edx-platform | common/test/acceptance/tests/lms/test_lms.py | Python | agpl-3.0 | 48,493 | [
"VisIt"
] | 79034b2104ca3e733dca6fda589ab6e017aa686e9b252368d8b4717701095481 |
#!/usr/bin/env python
"""
a class to handle results from BLAST searches
the parsed file that BlastMapper handles is a csv file with the following rows
query,hit-identifier,hit-identifier-long,e-score,bit-score
query is specific to the assembly
HitId is a RefSeq
there is an example of this file in the uni... | ajrichards/htsint | htsint/blast/BlastMapper.py | Python | bsd-3-clause | 16,495 | [
"BLAST"
] | 61aff0516f733dadc2c3c0193bcd9e4966f54b2190e8e750e705d46784576dd5 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import itertools
import pytest
import numpy as np
from numpy.testing import assert_almost_equal, assert_allclose
from ..convolve import convolve... | AustereCuriosity/astropy | astropy/convolution/tests/test_kernel_class.py | Python | bsd-3-clause | 18,917 | [
"Gaussian"
] | 069625d4cad19b1f39dd8c671f52bb6fe92a8187ee988d854a9321a2aa78fa6c |
# Copyright 2013 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | CSCI1200Course/csci1200OnlineCourse | modules/oauth2/oauth2.py | Python | apache-2.0 | 7,309 | [
"VisIt"
] | ee6cfb35f38830e6f093d117cdc72130075e8eb64b3f4714dd1fccd8ea0ec0f6 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/pbc/df/incore.py | Python | apache-2.0 | 8,456 | [
"PySCF"
] | 34d7c39ce718be6641c08400b8b94757a1b221254b9c54579cb47fb9d8d827cb |
from pygraphviz import AGraph
import base64
import tempfile
from simpleai.search import SearchProblem
class BadInputGraph(Exception):
pass
class DotGraphSearchProblem(SearchProblem):
"""
Playground for stuff in the library... eats a .dot graph and allows you
to try it with the search methods.
""... | matuu/simpleai | samples/search/dotsearch.py | Python | mit | 4,741 | [
"VisIt"
] | 386a31c4b4bc378ac6a632571c73a6cdab1952bd4cb31e6a395f25cfdcfa3f7d |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Most features of this module has been moved to monty. Please refer to
monty.json and monty.serialization documentation.
"""
import functools
import json
import pickle
from pymatgen.core.periodic_table imp... | gmatteo/pymatgen | pymatgen/util/serialization.py | Python | mit | 3,711 | [
"pymatgen"
] | f0c78f6829d85ba07c9422693c7f446c98615aa11dcf8ce55cc53cc8900994ad |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides input and output mechanisms
for the xr file format, which is a modified CSSR
file format and, for example, used in GULP.
In particular, the module makes it easy
to remove shell positions from relaxati... | vorwerkc/pymatgen | pymatgen/io/xr.py | Python | mit | 6,166 | [
"GULP",
"pymatgen"
] | 1e45cd2d51fe3620000026e3f1146070d27ec598a43c5390e95a2adc0de90cd6 |
# -*- coding: utf-8 -*-
"""
Use local copy of wxVTKRenderWindowInteractor until the baseClass.__init__() order is adapted to glcanvas-2.9
"""
import sys
import os
import traceback
vtk = None
try:
import vtk
except ImportError as e:
traceback.print_exc(file=sys.stdout)
sys.stderr.write("no VTK installat... | KristoferHellman/gimli | python/pygimli/gui/vtk/qtVTKPanel.py | Python | gpl-3.0 | 1,102 | [
"VTK"
] | a4e019d41b904cfedce9f227b18ef07bd52770dce3dc15695038066cb884c414 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.Imas.BlueCoat/setup.py | Python | gpl-2.0 | 3,259 | [
"VisIt"
] | 86e27f1cba01bbef2af8b59c43b5d6a184fbea3d5e2ce44616e33d8cb0d19302 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
urlpatterns = [
url(r'^$', TemplateView.as_view(templ... | vandorjw/io_vandorp_blog | config/urls.py | Python | bsd-3-clause | 1,237 | [
"VisIt"
] | af255175c3833900098a3ee381e0f1bdc5038dc42abce766202ecc174a0462c9 |
import unittest
from nose.tools import assert_true
import numpy as np
from numpy.testing import (assert_array_equal, assert_array_almost_equal,
assert_raises)
from scipy import stats
from sklearn import mixture
from sklearn.datasets.samples_generator import make_spd_matrix
rng = np.random.R... | loli/semisupervisedforests | sklearn/mixture/tests/test_gmm.py | Python | bsd-3-clause | 13,417 | [
"Gaussian"
] | 01a44e75b9242c1899f363fc2c440ebc8be2fcaa23945d41a1f5263f2133e85a |
#!/usr/bin/env python
import os
import sys
from Bio import Phylo
from Bio.Phylo.PAML import codeml
from Bio.Phylo.PAML import _parse_codeml
from Bio.Phylo.Consensus import _BitString
import io
import re
def _bitstrs(tree,term_names):
#function from http://biopython.org/wiki/Phylo
# store and return all _BitSt... | tsackton/ratite-genomics | 06_protein_coding_analysis/paml_parser/branchsite_parser.py | Python | gpl-3.0 | 10,474 | [
"Biopython"
] | 1ecbbfd40037a6c30c60941cdd88365a22f859e218ec753e1528c39bd15a875c |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Methods for preparing and printing barrel labels with the TSC TTP-243E Plus
printer.
description
:REQUIRES:
:TODO:
"""
import Tix
import tkMessageBox
import datetime
#import xlwt, xlrd
from utils import print_labels, settings
def main(_, shipmentItemID):
#X... | Ripley6811/TAIMAU | src/frames/po/label_prep_frame.py | Python | gpl-2.0 | 17,523 | [
"ASE"
] | 6889cb4938378330632926084aa55d47c733afef621d5f56b3cf6f43b93e1432 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jH0ward/psi4 | psi4/share/psi4/databases/BAKERJCC96.py | Python | lgpl-3.0 | 16,142 | [
"Psi4"
] | e7d9280f3067b723cb967f71b69b5a3087b6cb83a5f4a007ab1f2b4063776a73 |
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are ... | wizmer/NeuroM | neurom/apps/tests/test_morph_stats.py | Python | bsd-3-clause | 12,237 | [
"NEURON"
] | 3c6a3a7c2e35ea122d68ebc2140a9fb652dcebc6a1ca6c564b6245011e2a9691 |
# Copyright 2016 Battelle Energy Alliance, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agr... | brianmoose/civet | client/tests/test_INLClient.py | Python | apache-2.0 | 4,393 | [
"MOOSE"
] | da89ee9848e3402869174f997df51457fcf1c550769640a7ceac0766884b9a07 |
#! /usr/bin/env python
########################################################################
# File : dirac-admin-ce-info
# Author : Vladimir Romanovsky
########################################################################
"""
Retrieve Site Associated to a given CE
Usage:
dirac-admin-ce-info [options] ... ... | yujikato/DIRAC | src/DIRAC/Interfaces/scripts/dirac_admin_ce_info.py | Python | gpl-3.0 | 1,384 | [
"DIRAC"
] | 43c089b6e6b0e4c3b588d58924a331ea4b1778b3e5ed2d350f8d3ca808825355 |
from __future__ import print_function
"""Functions for in-place manipulation of bundletrajectories.
This module defines a number of functions that can be used to
extract and delete data from BundleTrajectories directly on
disk. The functions are intended for large-scale MD output,
so they avoid copying the potenti... | suttond/MODOI | ase/io/bundlemanipulate.py | Python | lgpl-3.0 | 5,575 | [
"ASE"
] | d05243c38ac9bc60e1977ac052281acceda177214321655754973a2200aac7b3 |
#!/usr/bin/env python2
#This test checks functionality related to mapping via center of point (no
#weighting).
#Current only using null masses, as native 'center' method is broken.
import sys
sys.path.append('../../../src/')
import cgmap as cg
import mdtraj as md
from mdtraj.core.element import Element
import md_ch... | uchicago-voth/cgmap | test/molecular_map_test/same_molecules_cop/test_same_molecules_cop.py | Python | apache-2.0 | 3,869 | [
"MDTraj"
] | 9be8ce207768993784bacdd6a46a3c3bbfdd0701e3d19330f6ba92fe71ee5478 |
# Lint as: python2, python3
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
... | jhseu/tensorflow | tensorflow/tools/compatibility/tf_upgrade_v2_test.py | Python | apache-2.0 | 100,321 | [
"Gaussian"
] | 38d3cce8fafdee5b7fe2db5d9c527563565c393115abbfff645403ffd2091aba |
# Copyright (C) 2009-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | FedoraScientific/salome-hexablock | src/TEST_PY/test_v6/makeSphereTop.py | Python | lgpl-2.1 | 968 | [
"VTK"
] | 0918f6b801c79f1e731f9438d35b93d8335bc397ff27678dc72d4faba26adb9a |
"""
Instructor Dashboard Views
"""
import datetime
import logging
import uuid
import pytz
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.core.urlresolvers import reverse
from django.http import Http404, HttpResponseServerError
from django.utils.html import escap... | lduarte1991/edx-platform | lms/djangoapps/instructor/views/instructor_dashboard.py | Python | agpl-3.0 | 35,972 | [
"VisIt"
] | d84cc01a20ab5e5c4ce8115d2b112ba1aa60c4caf9c330f1f0e0a25e9dd2542b |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | doc/sphinxman/source/psi4doc/ext/relbar_toc.py | Python | gpl-2.0 | 2,546 | [
"Psi4"
] | b9cdc61e22c19dfa65f93f59d89178b57bfdced672568629a4a2191a8bafd9c0 |
#!/usr/bin/env python
from random import uniform
from math import exp
class Neuron:
def __init__(self, n_inputs):
self.n_inputs = n_inputs
self.weights = [uniform(-1, 1) for i in range(n_inputs)]
self.bias = uniform(-1, 1)
def get_net(self, inputs):
net = sum([self.weights[i] ... | andrecunha/simple-ml | mlp.py | Python | unlicense | 3,660 | [
"NEURON"
] | fedbd4ff21de820c7c27480b40c5c7b42ab6dc936dc6b6ee4e0c68b9ebcbc793 |
"""
rgenetics datatypes
Use at your peril
Ross Lazarus
for the rgenetics and galaxy projects
genome graphs datatypes derived from Interval datatypes
genome graphs datasets have a header row with appropriate columnames
The first column is always the marker - eg columname = rs, first row= rs12345 if the rows are snps
su... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/datatypes/genetics.py | Python | gpl-3.0 | 31,000 | [
"Galaxy"
] | 099472b6ca827f485d742b61fbeb9b329c9a38907a513b60c6b707c14cca4e12 |
# -*- coding: utf-8 -*-
######################################################################
## Filename: pySNIFS_fit.py
## Version: $Revision$
## Description:
## Author: Emmanuel Pecontal
## Author: $Author$
## $Id$
######################################################################
from... | snfactory/extract-star | extract_star/pySNIFS_fit.py | Python | mit | 45,573 | [
"Gaussian"
] | bd77264961c480b6bb538759696807d542914713fe97086ab2192e719b34dbcc |
# scripts to compare fit files from fitacf and fitlomb
# generate rawacf file with known targets
# process file with fitacf and fitlomb
# compare output..
import os
import sys
import pdb
import datetime
import h5py
import pydarn.sdio as sdio
from multiprocessing import Manager
from rawacf_generator import rawacf_rec... | loxodes/SuperDARN_pydmap_write | fitacf_fitlomb_compare.py | Python | mit | 6,053 | [
"Gaussian"
] | f56f37df301194ea2799ffac9c286a95b9fd462c818948970a793e5d4a4f1b93 |
# Copyright 2017 Norman Heckscher. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the 'License');
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable la... | normanheckscher/mnist-multi-gpu | mnist_multi_gpu_batching_train.py | Python | apache-2.0 | 26,392 | [
"Gaussian"
] | 31017cabddab86124c61667e8020f6cc6269c31e4d3242e6e2b3431f246e4809 |
# pylint: disable=arguments-differ
""" Models for the shopping cart and assorted purchase types """
from collections import namedtuple
from datetime import datetime
from datetime import timedelta
from decimal import Decimal
import json
import analytics
from io import BytesIO
from django.db.models import Q, F
import py... | caesar2164/edx-platform | lms/djangoapps/shoppingcart/models.py | Python | agpl-3.0 | 91,861 | [
"VisIt"
] | 22e062f88a8f0f25c608f7692f2a2bcfce1fd09d39ae6eaa7d80c1405159f89e |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/e2openplugin-OpenWebif | plugin/controllers/views/web/zap.py | Python | gpl-2.0 | 5,139 | [
"VisIt"
] | f37d36392cd85d81051ac1cfba421b19c9a4177114ca9f8fada8401385d0a20e |
#------------------------------------------------------------------------------
# FILE: format_flux_climo.py
# AUTHOR: Kel Markert
# EMAIL: kel.markert@nasa.gov
# ORGANIZATION: NASA-SERVIR, UAH/ESSC
# MODIFIED BY: n/a
# CREATION DATE: 28 Oct. 2016
# LAST MOD DATE: 03 Apr. 2017
# PURPOSE: This script takes gride... | KMarkert/servir-vic-training | scripts/format_flux_climo.py | Python | gpl-3.0 | 6,740 | [
"NetCDF"
] | 8f38427a8478b055fe260a78aa00750e67ffb76415a98a2d7bd8eb270713d241 |
# -*- coding: utf-8 -*-
"""
Test the Studio help links.
"""
from unittest import skip
from common.test.acceptance.fixtures.course import XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.studio.asset_index import AssetIndexPageStudioFrontend
fro... | a-parhom/edx-platform | common/test/acceptance/tests/studio/test_studio_help.py | Python | agpl-3.0 | 39,301 | [
"VisIt"
] | b79e182e99a71b26d85db4270b198fa0a07856970da10097f2ee58190e605df4 |
# -*- coding: utf-8 -*-
""" Tests for student account views. """
import logging
import re
from unittest import skipUnless
from urllib import urlencode
import mock
import ddt
from django.conf import settings
from django.core import mail
from django.core.files.uploadedfile import SimpleUploadedFile
from django.core.url... | prarthitm/edxplatform | lms/djangoapps/student_account/test/test_views.py | Python | agpl-3.0 | 28,775 | [
"VisIt"
] | f65a9cc6f093ad5e8e6aa17710f3e79c6fa20a6d01658cadc01e133f908ea9e4 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | shakamunyi/beam | sdks/python/apache_beam/runners/direct/direct_runner.py | Python | apache-2.0 | 12,121 | [
"VisIt"
] | 78ed38c5a3afad22977b7dbace04f3c7310ad8b11cb7b7b44df4b683dd0e7249 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2004-2007 Donald N. Allingham
# Copyright (C) 2010 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ei... | SNoiraud/gramps | gramps/gen/display/__init__.py | Python | gpl-2.0 | 851 | [
"Brian"
] | dde2e45bb63c9dd368f435c8b72ce5907ce1f1bcc2c02f188117ce3fa15af2c4 |
# vclamptest.py ---
#
# Filename: vclamptest.py
# Description:
# Author:
# Maintainer:
# Created: Wed Feb 6 16:25:52 2013 (+0530)
# Version:
# Last-Updated: Tue Jun 11 17:30:34 2013 (+0530)
# By: subha
# Update #: 148
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
# Set up a voltag... | dilawar/moose-full | moose-examples/traub_2005/py/vclamptest.py | Python | gpl-2.0 | 4,847 | [
"MOOSE",
"NEURON"
] | 26a69a2948f245b69232b952c80cdc4b5cef528dfccf6b89605aa72b90990278 |
"""Utility functions to help with pure numpy stuff."""
from typing import TypeVar
import numpy as np
import scipy.linalg as la
# Type variable for ArrayLike arguments
FloatArrayLike = TypeVar("FloatArrayLike", float, np.ndarray)
def save_ndarray_list(fname, la):
"""Save a list of numpy arrays to disk.
Thi... | radiocosmology/cora | cora/util/nputil.py | Python | mit | 3,428 | [
"Gaussian"
] | 19a7a2ea807d0d1ea2d6b5e21477fc10005575a0184a35c93022c4393734ae2f |
# Neural Network
# -- nn.py
#
# @package NeuralNetwork
# ------------------------ ATTENTION, MORTALS: README ------------------------
# I will now describe how the code is organized so anyone interested in it can
# quickly get up to speed.
#
# Being a neural network, there needs to be some number of nodes and some num... | atomictom/WiseGuy | parallel_nn.py | Python | gpl-3.0 | 10,194 | [
"NEURON"
] | 996344f784443c052a9ab7c7dd18404d402ed759444bd80e07690e5c9a0e8a71 |
# Copyright 2008-2014 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | eric-stanley/robotframework | src/robot/model/testsuite.py | Python | apache-2.0 | 5,540 | [
"VisIt"
] | 46883a4b73c2839aa2646e1f9be1fcea41f9cca647ca5262821c6b70bff43289 |
# -*- coding: utf-8 -*-
###########################################################################
# OCRFeeder - The complete OCR suite
# Copyright (C) 2009 Joaquim Rocha
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publ... | ackalker/ocrfeeder | src/ocrfeeder/studio/customWidgets.py | Python | gpl-3.0 | 25,264 | [
"FLEUR"
] | 71376419ebf8df9dc46e68b2de1f0fb3eb131d9c8e34fa020319c2e8f3ca0c3a |
""" The SystemAdministratorClient is a class representing the client of the DIRAC
SystemAdministrator service. It has also methods to update the Configuration
Service with the DIRAC components options
"""
__RCSID__ = "$Id$"
from DIRAC.Core.Base.Client import Client, createClient
SYSADMIN_PORT = 9162
@creat... | fstagni/DIRAC | FrameworkSystem/Client/SystemAdministratorClient.py | Python | gpl-3.0 | 683 | [
"DIRAC"
] | 8232481c238566b6e393a7bf02cb5cba05056017b5986669e24a693615dfddeb |
# -----------------------------------------------------------------------------
# db.py - db abstraction module
# -----------------------------------------------------------------------------
# Copyright 2006-2012 Dirk Meyer, Jason Tackaberry
#
# Please see the file AUTHORS for a complete list of authors.
#
# This libr... | freevo/kaa-base | src/db.py | Python | lgpl-2.1 | 113,019 | [
"BLAST"
] | a9b704b4eddfbd43ae12478843fae2b9c2158543cc9b949892aa012e6e153df5 |
'''
This module contains all the stuff to make your way from python code to
a dynamic library, see __init__.py for exported interfaces.
'''
from pythran.backend import Cxx
from pythran.config import cfg, make_extension
from pythran.cxxgen import BoostPythonModule, Define, Include, Line, Statement
from pythran.cxxgen i... | artas360/pythran | pythran/toolchain.py | Python | bsd-3-clause | 14,333 | [
"VisIt"
] | 2c3f3e9ce84a939b85fcc6e742561a32235e942c79a7c4df729947c8dce7f064 |
# -*- coding: utf-8 -*-
#
# hl_api_types.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, o... | tammoippen/nest-simulator | pynest/nest/lib/hl_api_types.py | Python | gpl-2.0 | 33,310 | [
"Gaussian"
] | f71e6db68728a33b0b8bc74fe5844f0555aada1307b3254895b3e6acfcc191c3 |
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | vidartf/hyperspy | hyperspy/tests/component/test_component_set_parameters.py | Python | gpl-3.0 | 1,981 | [
"Gaussian"
] | bc9fd497c3453ed90322f1c74b538e6cb0acf78d2d5bed02ec40310da5f17262 |
"""
=================================
Linear fascicle evaluation (LiFE)
=================================
Evaluating the results of tractography algorithms is one of the biggest
challenges for diffusion MRI. One proposal for evaluation of tractography
results is to use a forward model that predicts the signal from eac... | FrancoisRheaultUS/dipy | doc/examples/linear_fascicle_evaluation.py | Python | bsd-3-clause | 11,967 | [
"Gaussian"
] | f82498271bbc844a4eca1c4aa7fb8de8915abcdde27f71b1066fcf473cf31cd3 |
"""
Copy data between two netCDF4 datasets.
This lets you make modified versions of data read from file.
It doesn't support Groups, so it's not full NETCDF4 compliant :-(
Can control which variables and (global) attributes are in- or ex-cluded.
(Or.. can just copy the lot and modify before closing.)
TODO:
add prope... | pp-mo/ncobj | old/nc_copy.py | Python | gpl-3.0 | 7,243 | [
"NetCDF"
] | 875d09fbec0da1de90bbf4d7951d0191918af527b7937412f75061ae044d89ab |
import os
from datetime import datetime
from django.test import SimpleTestCase
from django.utils.functional import lazystr
from django.utils.html import (
conditional_escape, escape, escapejs, format_html, html_safe, json_script,
linebreaks, smart_urlquote, strip_spaces_between_tags, strip_tags, urlize,
)
from... | atul-bhouraskar/django | tests/utils_tests/test_html.py | Python | bsd-3-clause | 12,170 | [
"ADF"
] | 1bb9144b003ee80c3b44cb825f86f3aee3a109a6dc1f02d68cff21f8094d8abb |
#!/usr/bin/python
# (C) 2013, Markus Wildi, markus.wildi@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# Th... | xyficu/rts2 | scripts/rts2saf/rts2saf_unittest.py | Python | gpl-2.0 | 4,889 | [
"VisIt"
] | 13f4f9349c501bbc0fa8447998b30e2296bc4803dac283e07d6c43acf77101e3 |
#!/usr/bin/env python
# File: plot_icd_mass.py
# Created on: Tue Jun 4 11:31:32 2013
# Last Change: Mon Aug 12 14:09:04 2013
# Purpose of script: <+INSERT+>
# Author: Steven Boada
import pylab as pyl
import cPickle as pickle
def plot_icd_vs_mass():
galaxies = pickle.load(open('galaxies.pickle','rb'))
arrow_... | boada/ICD | sandbox/plot_z_box_zooms.py | Python | mit | 3,244 | [
"Galaxy"
] | e19550cfe9d07746e3625b018c3c350de8d633690fcff3487280f5f51547034e |
""" Definitions of a standard set of pilot commands
Each commands is represented by a class inheriting CommandBase class.
The command class constructor takes PilotParams object which is a data
structure which keeps common parameters across all the pilot commands.
The constructor must call the supercla... | fstagni/DIRAC | WorkloadManagementSystem/PilotAgent/pilotCommands.py | Python | gpl-3.0 | 38,465 | [
"DIRAC"
] | 9629e7c83e28afb6212243b938bf6d0b52d09e6d218325a83bac97f64f3096d6 |
"""Convolutional/Variational autoencoder, including demonstration of
training such a network on MNIST, CelebNet and the film, "Sita Sings The Blues"
using an image pipeline.
Copyright Parag K. Mital, January 2016
"""
import tensorflow as tf
import numpy as np
import os
from libs.dataset_utils import create_input_pipel... | pkmital/CADL | session-4/libs/vae.py | Python | apache-2.0 | 19,302 | [
"Gaussian"
] | 94b3d2d46971a9a0161893d800eaa16df665f3713e7d5d69326fd9bf18d90535 |
import os
def show_blast_hits(hits,query=False,pause=False):
'''
launch one firefox tab for each subject (or query) id
add additional jbrowse track showing where the blast hits are
firefox should already be running when this is called
query == True means query is the reference sequence
que... | robertvi/rjv | jbrowse.py | Python | gpl-2.0 | 2,247 | [
"BLAST"
] | 4208d1cf5bcfbd410a1f91cc84cb224e4b18648c078f47028341c2baea66ae1e |
#!/usr/bin/env python3
# ABOUT
# Artisan Dialogs
# LICENSE
# This program or module is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License as published
# by the Free Software Foundation, either version 2 of the License, or
# version 3 of the License, or (at your... | MAKOMO/artisan | src/artisanlib/dialogs.py | Python | gpl-3.0 | 9,662 | [
"VisIt"
] | 2eb10d05c597ce2700c6295e09665ee38c5dc6a5e1af518f89fd21847c08374b |
"""
This module implements dependency resolution and execution within Red Hat Insights.
"""
import inspect
import logging
import os
import pkgutil
import re
import six
import sys
import time
import traceback
from collections import defaultdict
from functools import reduce as _reduce
from insights.contrib import impor... | wcmitchell/insights-core | insights/core/dr.py | Python | apache-2.0 | 20,116 | [
"VisIt"
] | 9d65b7b25bfa2fda43d69afc632164f0f0c0d63dab8ff53186955b19a4db8b8f |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2002 Gary Shao
# Copyright (C) 2007 Brian G. Matherly
# Copyright (C) 2009 Benny Malengier
# Copyright (C) 2009 Gary Burton
# Copyright (C) 2014 Nick Hall
# Copyright (C) 2017... | SNoiraud/gramps | gramps/gen/plug/docgen/stylesheet.py | Python | gpl-2.0 | 19,898 | [
"Brian"
] | ff824e5ed830990064f35329e9949f6d13a07aaeacaef1a8c86a5bfeb0c23531 |
import datetime
import asyncio
import strawpy
import pytz
import re
import requests
import json
import discord
import os
import glob
from PIL import Image
from PythonGists import PythonGists
from discord.ext import commands
from cogs.utils.checks import embed_perms, cmd_prefix_len, attach_perms, find_channel
from bs4 i... | shivaco/selfbot | cogs/utility.py | Python | gpl-3.0 | 42,909 | [
"MOE"
] | 643c55f9625f65efdba511992da2fc601281e1e8959e31edb38757840621a3a5 |
#!/usr/bin/python
"""
##################################################################################
extract file uploaded by HTTP from web browser; users visit putfile.html to
get the upload form page, which then triggers this script on server; this is
very powerful, and very dangerous: you will usually wa... | simontakite/sysadmin | pythonscripts/programmingpython/Internet/Web/cgi-bin/putfile.py | Python | gpl-2.0 | 4,140 | [
"VisIt"
] | 9242c91cc0ac478d9e01f4f2a1763423a13668564488568b6549a3929bdc2f5c |
from __future__ import print_function, division
from sympy.core import Mul
from sympy.functions import DiracDelta, Heaviside
from sympy.solvers import solve
from sympy.core.compatibility import default_sort_key
def change_mul(node, x):
"""change_mul(node, x)
Rearranges the operands of a product, bringing... | wolfram74/numerical_methods_iserles_notes | venv/lib/python2.7/site-packages/sympy/integrals/deltafunctions.py | Python | mit | 6,208 | [
"DIRAC"
] | 5db47c18084cc50abc8e2b71279085130f7143f0ccff6ad3e9513d6d2a078b01 |
import numpy as np
from ase.transport.calculators import TransportCalculator
import pylab
# onsite energies 0.0, nearest neighbor hopping -1.0, and
# second nearest neighbor hopping 0.2
H_lead = np.array([[ 0. , -1. , 0.2, 0. ],
[-1. , 0. , -1. , 0.2],
[ 0.2, -1. , 0. , -1.... | qsnake/gpaw | doc/exercises/transport/pt_h2_tb_transport.py | Python | gpl-3.0 | 1,882 | [
"ASE"
] | 3c30e1eaf9b67736462a78d0be46bc6e9177862421b11100c4857ecd5b1c670f |
import logging
import os
import time
from datetime import datetime
import numpy as np
from netCDF4 import Dataset
from netCDF4 import num2date
__author__ = 'Trond Kristiansen'
__email__ = 'me@trondkristiansen.com'
__created__ = datetime(2009, 3, 16)
__modified__ = datetime(2021, 3, 26)
__version__ = "1.6"
__status__ ... | trondkr/model2roms | IOinitial.py | Python | mit | 21,834 | [
"NetCDF"
] | daa686f32fa030e71ca7d1763665400d58aa66c0f4871ea2fc8d4c6f9c9430d6 |
##############################################################################
#
# Copyright (C) 2018 Compassion CH (http://www.compassion.ch)
# @author: Emanuel Cino <ecino@compassion.ch>
#
# The licence is in the file __manifest__.py
#
#########################################################################... | CompassionCH/compassion-switzerland | website_event_compassion/forms/medical_discharge_form.py | Python | agpl-3.0 | 1,771 | [
"VisIt"
] | 949b245de38b57db7dac17f6c69981d2594f7249cc56cd25dd2634d2940c246c |
#!/usr/bin/env python
##
## Copyright 2016 SRI International
## See COPYING file distributed along with the package for the copyright and license terms.
##
import os
import re
import glob
import time
import filecmp
import pandas
# Truncate age to 2 digits for increased identity protection
def truncate_age(age_in... | abonil91/ncanda-data-integration | scripts/redcap/export_redcap_to_pipeline.py | Python | bsd-3-clause | 16,438 | [
"VisIt"
] | 44e488ac8b18a028894d2848dd9afcbf06c788618f58408b060808f2b92a1fdd |
# -*- coding: utf-8 -*-
#
# network_params.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | terhorstd/nest-simulator | pynest/examples/Potjans_2014/network_params.py | Python | gpl-2.0 | 8,242 | [
"NEURON"
] | b9c733111c416e670cd6be8fa6fe5c78f68f6b48699cd30b01dc1d4949d4d9f3 |
# ***** BEGIN GPL LICENSE BLOCK *****
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distri... | Passtechsoft/TPEAlpGen | blender/release/scripts/addons_contrib/online_mat_lib/__init__.py | Python | gpl-3.0 | 326,282 | [
"Firefly"
] | 9ebbb1f8e0777f65a25b559bdd1f07c56e8302f4ba8a741e3bb8d13d6e2392af |
import numpy as np
seed = np.random.randint(2**16)
#seed = 25982
print "Seed: ", seed
import matplotlib.pyplot as plt
from matplotlib.patches import Polygon
from optofit.cneuron.compartment import Compartment
from optofit.cneuron.channels import LeakChannel
from optofit.cneuron.simulate import forward_euler
from opto... | HIPS/optofit | examples/gp_demo.py | Python | gpl-2.0 | 7,235 | [
"Gaussian"
] | 5dc051e9af3649a2784db3d0d50dfa21f43edbf0afd24438c2a6e43cee704b29 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | gregcaporaso/scikit-bio | skbio/alignment/tests/test_pairwise.py | Python | bsd-3-clause | 35,055 | [
"scikit-bio"
] | a5a47b2269b57274ef373f7c102398ff5b6cb1aac0872492d713659292f80375 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
dump2data.py
Extract dynamical degrees of freedom from a lammps DUMP file (from the stdin)
and construct a new DATA file (to the stdout).
A reference DATA file is needed (argument).
basic usage
./dump2data.py orig_file.data < dump.lammpstrj > new_file.data
(Thi... | anshumang/lammps-analytics | tools/moltemplate/src/dump2data.py | Python | gpl-2.0 | 59,293 | [
"LAMMPS"
] | f8ee06f65febb408cb93b6e5d366e26e47d1f37b54056f3539abcd432556d26f |
#!/usr/bin/env python
import sys
import numpy as np
import argparse
import netCDF4 as nc
"""
This script makes a fluid animation using NetCDF data.
"""
def main():
print("I'm the main function")
return True
if __name__=="__main__":
sys.exit(main())
| Jingwan-Li/fluids-movie | make_movie.py | Python | apache-2.0 | 256 | [
"NetCDF"
] | 9b6f33e8529807b98d1713c423777415a5c5e524f64f9413c1973ec1e0fc9f01 |
from splinter import Browser
class UreportApplication:
def __init__(self):
self.browser = Browser()
def close(self):
self.browser.quit()
def navigate_to_home_page(self):
return HomePage(self.browser).load()
class HomePage():
def __init__(self, browser):
self.brows... | mbanje/ureport_uganda | functional_test/fixtures/home_page.py | Python | bsd-3-clause | 592 | [
"VisIt"
] | 80288fe0bf2c1361399945a56523d95f839e09865a74efb8b49cebec3ddccb53 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# install - MiG server install helpers
# Copyright (C) 2003-2015 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License... | heromod/migrid | mig/shared/install.py | Python | gpl-2.0 | 21,112 | [
"Brian"
] | c837e83bb9ee3ff721905e23b52588c5f2164faa495ce7efbf681b2106e1d87c |
from cubesymapi import iofile, Calculation
import numpy as np
import matplotlib.pyplot as plt
# read gaussian cube file
ranges, cube_density = iofile.get_density_cube('../data/C3B9.cube')
# create Calculation instance
calculation = Calculation(cube_density, ranges)
# get density from [x:0, y:0, z:-6] to [x:0, y:0, ... | abelcarreras/cubesym | scripts/density_example.py | Python | mit | 773 | [
"Gaussian"
] | d2ab145119f1ad88948844ea1491eebb1e26b9868d6edd279a990304fb3e71b4 |
# -*t coding:Utf-8 -*-
r"""
.. currentmodule:: pylayers.antprop.channel
.. autosummary::
:toctree: generated/
TBchannel class
===============
.. autosummary::
:toctree: generated/
TBchannel.tau_Emax
TBchannel.tau_moy
TBchannel.tau_rms
TBchannel.delays
TBchannel.toFD
TBchannel.SalehVa... | buguen/pylayers | pylayers/antprop/channel.py | Python | lgpl-3.0 | 153,051 | [
"BLAST",
"Gaussian"
] | 64b944f71bcd4fe7ea073acaab80f5c5e5bb760c542f7289d4a4f9de1bfc40d0 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# freeseer - vga/presentation capture software
#
# Copyright (C) 2014 Free and Open Source Software Learning Centre
# http://fosslc.org
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publi... | Freeseer/freeseer | src/freeseer/tests/framework/test_util.py | Python | gpl-3.0 | 4,506 | [
"VisIt"
] | a6d82154cbf0f25a6f5deb9347d16f9b5294db6c6ed7349b98e58a46c4f3e4ee |
from . import core, utils
import cgt
import ctypes, os.path as osp, hashlib, numpy as np, sys, subprocess, string, os, time, traceback, cPickle
from collections import defaultdict, namedtuple
from StringIO import StringIO
import logging
def function(inputs, outputs, dbg=None, updates=None, givens=None):
assert isi... | briancheung/cgt | cgt/compilation.py | Python | mit | 36,602 | [
"VisIt"
] | ced57527d2cb086bbb1b2eb5e77e813fe6176d3743d3beddf336fc09521f4c07 |
#!/usr/bin/env python
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the fol... | BlueBrain/NeuroM | examples/end_to_end_distance.py | Python | bsd-3-clause | 4,392 | [
"NEURON"
] | 4e517838e405ce20b5accacec2ecebf068509a80a29bc01b501bda22c3e496a2 |
from io import BytesIO
from threading import Lock
import contextlib
import itertools
import os.path
import pickle
import shutil
import tempfile
import unittest
import sys
import numpy as np
import pandas as pd
import xray
from xray import Dataset, open_dataset, open_mfdataset, backends, save_mfdataset
from xray.backe... | petercable/xray | xray/test/test_backends.py | Python | apache-2.0 | 42,555 | [
"NetCDF"
] | 7d423a33e9c92e4bb9ce82f10bd8507ac364da5e6d39c40f983ab0fb1346ef95 |
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