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#!/usr/bin/env
"""
Chuckchi_Winds_NARR_model_prep.py
Retrieve NARR winds for one locations
Icy Cape Line, Ckip2
Latitude = 70.8401 Longitude = 163.2054
Filter NARR winds with a triangular filter (1/4, 1/2, 1/4) and output every 3hrs
Provide U, V
Save in EPIC NetCDF standard
python 2.7 only
"""
#System St... | shaunwbell/FOCI_Analysis | NARR_daily_WindsSFCtemp_Station.py | Python | mit | 10,585 | [
"NetCDF"
] | 516fde6e12004d247bc32b820baed0b1747e1770840b32007cbc6d6c2e201426 |
#!/usr/bin/env python
"""Copyright 2010 Phidgets Inc.
This work is licensed under the Creative Commons Attribution 2.5 Canada License.
To view a copy of this license, visit http://creativecommons.org/licenses/by/2.5/ca/
"""
__author__ = 'Adam Stelmack'
__version__ = '2.1.8'
__date__ = 'May 17 2010'
#Basi... | dborrero/Reed-Taylor-Couette | Old Code/Stepper-tests.py | Python | gpl-2.0 | 5,282 | [
"VisIt"
] | 3b369057312e83b8d8c24343bcd5443a1bd9e03f3c3979a271ad847235f9c51c |
# Copyright 2019 The MediaPipe Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... | google/mediapipe | mediapipe/examples/desktop/media_sequence/kinetics_dataset.py | Python | apache-2.0 | 20,519 | [
"Brian"
] | d198f6371048b0d62acdeb0ac0ecfa686f4522d140e519193969fa11807bd001 |
from utils import pickle_write, pickle_load
from projections import Projections
from sampling import Sampling
import time
import os
import logging
logger = logging.getLogger(__name__)
def comp_sketch(matrix, objective, load_N=False, save_N=False, N_dir='../N_file/', **kwargs):
"""
Given matrix A, the function ... | chocjy/randomized-LS-solvers | src/comp_sketch.py | Python | apache-2.0 | 7,388 | [
"Gaussian"
] | 932a124f2bb52f80ce3739c2443553810edc743d9e01f67e5b8c764822f45adf |
"""
Module for testing tst module.
"""
__author__ = 'wittawat'
import autograd.numpy as np
import matplotlib.pyplot as plt
import freqopttest.data as data
import freqopttest.util as util
import freqopttest.kernel as kernel
import freqopttest.tst as tst
import freqopttest.glo as glo
import scipy.stats as stats
import... | wittawatj/interpretable-test | freqopttest/test/test_tst.py | Python | mit | 4,093 | [
"Gaussian"
] | 049183fa9d645daba5183593a34e6ef6297336375b4ec7c4f1d59c93672bdcc5 |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright 2011 Rackspace
# Copyright (c) 2011 X.commerce, a business unit of eBay Inc.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of t... | usc-isi/essex-baremetal-support | nova/tests/network/test_manager.py | Python | apache-2.0 | 72,563 | [
"FEFF"
] | 643422c6b1829ad3ac00dd0d0503bc550b12298c447cab4cf3b8643398f0134b |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Hive Netius System
# Copyright (c) 2008-2020 Hive Solutions Lda.
#
# This file is part of Hive Netius System.
#
# Hive Netius System is free software: you can redistribute it and/or modify
# it under the terms of the Apache License as published by the Apache
# Foun... | hivesolutions/netius | src/netius/base/legacy.py | Python | apache-2.0 | 13,068 | [
"VisIt"
] | 07ed4c0941fe7ca4e44391aab4bf1c5ff91c018ce590c7a2bab91497509d59aa |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Paul Franklin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms o... | beernarrd/gramps | gramps/plugins/tool/verify.py | Python | gpl-2.0 | 66,835 | [
"Brian"
] | 8d16bc1d13fe18afba9368748a57583e90155200f7135ae6ac2152db10c4fc87 |
#!/usr/bin/python
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it ... | kannon92/psi4 | doc/sphinxman/document_databases.py | Python | gpl-2.0 | 1,854 | [
"Psi4"
] | fff4eba2df68ee8be412928a323ef9cb480c79263b8df0486b0216273ccc29ad |
#!/usr/bin/env python
#
# vine_utils.py
#
# Copyright 2009 David Vine <djvine@gmail.com>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either vers... | jbgastineau/cxphasing | cxphasing/vine_utils.py | Python | mit | 17,184 | [
"NetCDF"
] | aa8ed7c90edd48a5ccf92a01d3f096e552ec78c10d67b41b2045c72be63aad1e |
#!/usr/bin/env python
import logging
logging.basicConfig(format='%(asctime)s %(message)s', level=logging.INFO)
import sys
import os
import subprocess
from time import sleep
from bgqtools import (get_bootable_blocks, boot_blocks, block_corner_iter,
set_unbuffered_stdout)
set_unbuffered_stdout()... | marcocaccin/crack2Dglass | run_neb_cp2k.py | Python | gpl-2.0 | 2,785 | [
"CP2K"
] | 1c4706096a784229de713d4a2ce0a1ae6824f2bbd955779748079cc17c837a40 |
import numpy as np
import xarray as xr
from scipy.signal import filtfilt, gaussian
from scipy import stats
from dask.array import coarsen, ones_like
from dask.array.core import Array
import warnings
from xarrayutils.utilities import detect_dtype
from xarrayutils.filtering import filter_1D as filter_1D_refactored
"""... | jbusecke/xarrayutils | xarrayutils/utils.py | Python | mit | 27,958 | [
"Gaussian"
] | c40fcf558b03d96d555149d0bf7d8b093355d9f905276a0285f16339b35d6c77 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
from six.moves import filter, zip
import numpy as np
import six
import collections
from numbers import Number
import numbers
from functools import partial
im... | czhengsci/pymatgen | pymatgen/core/units.py | Python | mit | 28,044 | [
"pymatgen"
] | f8880a4dbaaf3ba483c0d1c7222e6670dad11a31af2ab3c128a91124f13770bd |
"""
Component wrappers are created by the ``start`` command after the associated
component's server has been started.
"""
import os
import sys
import time
import logging
import traceback
from functools import partial
from cStringIO import StringIO
import xml.etree.cElementTree as ElementTree
from xml.sax.saxutils impo... | naylor-b/aserver | analysis_server/compwrapper.py | Python | apache-2.0 | 20,804 | [
"VisIt"
] | 5f6dea75d0ea53e43bc22fb1d9812c83426227057f61033d0485f2cef521d9bb |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# ParseAllConfigurations - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under... | heromod/migrid | mig/server/ParseAllConfigurations.py | Python | gpl-2.0 | 1,646 | [
"Brian"
] | 4eb2aedda034cb1f55f8750ca6d3ade22ee4794f2272e0922b7cefb52a0a4d74 |
# A Radial Basis Function (unit) has three things that can be learned:
# center - the model vector
# radius - radius of the function
# weight - weighting of this node
__author__ = "Douglas Blank <dblank@brynmawr.edu>"
__version__ = "$Revision: 2587 $"
import numpy.oldnumeric as Numeric
import math, random
... | emilydolson/forestcat | pyrobot/brain/rbf.py | Python | agpl-3.0 | 1,509 | [
"Gaussian"
] | 1f3161f292e41e463da7170a482164b6c173e5fba4be8221eccfc136f5f15b25 |
# -*- coding: utf-8 -*-
##
## This file is part of Invenio.
## Copyright (C) 2011 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of the
## License, or (at your option) a... | Panos512/invenio | modules/pdfchecker/lib/arxiv_pdf_checker_regression_tests.py | Python | gpl-2.0 | 12,516 | [
"CRYSTAL"
] | e1340688cec01fac7e86eda23a945451d51dd366b3239354d9fd21e9fcd7b4d4 |
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SearchIO objects to model high scoring regions between query and hit."""
import sy... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/SearchIO/_model/hsp.py | Python | gpl-2.0 | 45,624 | [
"BLAST",
"Biopython"
] | bf7b458832794ac60535e12611b4dcccbaaa15baa621db1f676a74673ef30c27 |
# -*-python-*-
#
# Copyright (C) 1999-2006 The ViewCVS Group. All Rights Reserved.
#
# By using this file, you agree to the terms and conditions set forth in
# the LICENSE.html file which can be found at the top level of the ViewVC
# distribution or at http://viewvc.org/license-1.html.
#
# For more information, visit h... | foresthz/fusion5.1 | www/scm/viewvc/lib/dbi.py | Python | gpl-2.0 | 2,184 | [
"VisIt"
] | c9af091fab6610d2159289fb54cf18971e52782aa4efee7199a1262460968981 |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
import matp... | harterj/moose | python/mms/ConvergencePlot.py | Python | lgpl-2.1 | 3,697 | [
"MOOSE"
] | 36e6809db8e4274f5438bd7e683082878f5ce44513286ab7b2b535f167f7bfb4 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright 2015 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# ... | Bam4d/neon | examples/alexnet.py | Python | apache-2.0 | 3,704 | [
"Gaussian"
] | a47622957a16f279fbd981645df648248d867548848f347c39959259a101777f |
# Copyright (c) Charl P. Botha, TU Delft
# All rights reserved.
# See COPYRIGHT for details.
import itk
import module_kits.itk_kit as itk_kit
from module_base import ModuleBase
from module_mixins import NoConfigModuleMixin
import vtk
class ITKtoVTK(NoConfigModuleMixin, ModuleBase):
"""Convert ITK 3D float data to... | nagyistoce/devide | modules/insight/ITKtoVTK.py | Python | bsd-3-clause | 3,131 | [
"VTK"
] | 86d2446cd2d039896ef6ad9e93a6bfba89a94f41f489ad0e97276f3d70f8a181 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/enigma2-plugin-extensions-openwebif | plugin/controllers/views/ajax/settings.py | Python | gpl-2.0 | 5,912 | [
"VisIt"
] | 3fbb8c080b1ab65cfdcf8572c1806807ffa2d0c8c1b3eabf17ec97e136705439 |
from scipy.stats import norm, mvn #normal and bivariate normal
from numpy import sqrt
from numpy import exp
from datetime import date, timedelta
import datetime as dt
import pandas as pd
import numpy as np
from parameters import x0Vas
from Curves.Corporates.CorporateDaily import CorporateRates
from Products.Cred... | rrozewsk/OurProject | Curves/PortfolioLoss/PortfolioLossCalculations.py | Python | mit | 18,270 | [
"Gaussian"
] | 779df5b26b2d1a0809b28d4985cf3a153c23fd00115df9c8c5ef9c48a97ee494 |
from Firefly import logging
from Firefly.const import ACTION_OFF, ACTION_ON, COMMAND_SET_LIGHT, DEVICE_TYPE_SWITCH, LEVEL, SWITCH
from Firefly.helpers.device import *
from Firefly.helpers.device.device import Device
from Firefly.helpers.metadata.metadata import action_battery, action_dimmer, action_on_off_switch, actio... | Firefly-Automation/Firefly | Firefly/helpers/device_types/switch.py | Python | apache-2.0 | 5,854 | [
"Firefly"
] | b1b82e70283bed267db44d6f316a38a3f894bfb20a16972a1d8f86614eca4dd1 |
###########################################################################
# #
# physical_validation, #
# a python package to test the physical validity of MD results #
# ... | shirtsgroup/physical-validation | physical_validation/data/gromacs_parser.py | Python | lgpl-2.1 | 14,389 | [
"Gromacs"
] | 2b841c6a7b9d7d075e15543360c732a7509226337a5017052c33f9d675912c4e |
#!/usr/bin/env python
"""@namespace IMP.pmi.representation
Representation of the system.
"""
from __future__ import print_function
import IMP
import IMP.core
import IMP.algebra
import IMP.atom
import IMP.display
import IMP.isd
import IMP.pmi
import IMP.pmi.tools
import IMP.pmi.output
import IMP.rmf
import IMP.pmi.... | shanot/imp | modules/pmi/pyext/src/representation.py | Python | gpl-3.0 | 111,198 | [
"Gaussian"
] | 80e4240ebaa82f861072ae82df028298c350fadcfa0f5e3d679e65f174afc76e |
#! /usr/bin/env python
########################################################################
# $HeadURL$
########################################################################
from __future__ import print_function
__RCSID__ = "$Id$"
from DIRAC import exit as DIRACExit
from DIRAC.Core.Base import Scrip... | fstagni/DIRAC | DataManagementSystem/scripts/dirac-dms-change-replica-status.py | Python | gpl-3.0 | 1,594 | [
"DIRAC"
] | 29ae9c48e32aa1155fff414aed24dcac2a99e1884702acd2b738d69808df014b |
import unittest
import numpy
import os
from rdkit.six.moves import cPickle
from rdkit import RDConfig,RDRandom
from rdkit.ML.InfoTheory import rdInfoTheory as rdit
from rdkit import DataStructs
def feq(a,b,tol=1e-4):
return abs(a-b)<tol
class TestCase(unittest.TestCase):
def setUp(self) :
pass
... | AlexanderSavelyev/rdkit | Code/ML/InfoTheory/Wrap/testRanker.py | Python | bsd-3-clause | 4,929 | [
"RDKit"
] | 51e35e19ff9a5c39571378078d8782efae6e15b7dc79c87629144e74ba833c05 |
#!/usr/bin/env python
"""Script to run all the tests.
"""
# Author: Prabhu Ramachandran <prabhu [at] aero . iitb . ac . in>
# Copyright (c) 2008, Prabhu Ramachandran
# License: BSD Style.
import sys
import os
from os.path import splitext
import glob
from common import TestCase
def get_tests():
"""Get all the tes... | liulion/mayavi | integrationtests/mayavi/run.py | Python | bsd-3-clause | 2,498 | [
"Mayavi"
] | 7db7178d08ac06a1da5035c4b0498332a68353020f197271df1102876b83de81 |
#!/usr/bin/env python
"""
Lamina specification
"""
import csv
import os
import collections
import numpy as np
import gzip
import networkx as nx
class hex_array(object):
"""
0 1 2 3 4
----------------------> cols (X=cols*sqrt(3))
0| 0 2 4
| 1 3
1| 5 7 9
... | cerrno/neurokernel | examples/lamina/data/vision_configuration.py | Python | bsd-3-clause | 23,995 | [
"NEURON"
] | 0ebc07d22d4a63ce7f5ff7b42f8063e7753fff0ae9648fc66a0409b18e984eba |
# -*- coding: utf-8 -*-
'''Chemical Engineering Design Library (ChEDL). Utilities for process modeling.
Copyright (C) 2016, 2017, 2018, 2019 Caleb Bell <Caleb.Andrew.Bell@gmail.com>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "So... | CalebBell/thermo | thermo/electrochem.py | Python | mit | 62,707 | [
"ASE"
] | f78d22c3fb126cd67b43517861395bb2a1acedde276f0e7bdeccfd402c3025c0 |
"""Spherical harmonic vector wind computations."""
# Copyright (c) 2012-2014 Andrew Dawson
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation ... | nicolasfauchereau/windspharm | lib/windspharm/standard.py | Python | mit | 19,295 | [
"Gaussian"
] | 81694525339a701a2375d85725d84186e3e65131a61ed2ae34afef3f104e958f |
"""
=============================================
Whitening evoked data with a noise covariance
=============================================
Evoked data are loaded and then whitened using a given noise covariance
matrix. It's an excellent quality check to see if baseline signals match
the assumption of Gaussian white... | kambysese/mne-python | examples/visualization/plot_evoked_whitening.py | Python | bsd-3-clause | 2,975 | [
"Gaussian"
] | 00e306f530c61aaaac51b8f3fe2354b8756a7216c89b801945eee50a975621e0 |
"""Test tools."""
import pytest
import os
from hdltools.verilog.codegen import VerilogCodeGenerator
from hdltools.template import HDLTemplateParser
from hdltools.mmap import parse_mmap_str
from hdltools.mmap.builder import MMBuilder
def test_vec():
"""Test verilog code generator."""
print(VerilogCodeGenerator... | brunosmmm/hdltools | tests/test_tools.py | Python | mit | 1,942 | [
"VisIt"
] | 2d746f6e0be0d13320df0b0bcf429756effba2585bf3c4523e41773d24271fc1 |
# -*- coding: utf-8 -*-
from PyQt5 import QtCore, QtGui, QtWidgets
from PyQt5.QtWidgets import QApplication, QWidget, QLabel, QColorDialog
from PyQt5.QtGui import *
import sys
import serial
import logging
import pyHandyCAN
import time
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow... | SirVolta/HandyCAN | PC/hcdemogui.py | Python | gpl-3.0 | 10,285 | [
"Amber"
] | fd636e2dc479ab2c176307b4414b30b9f1d33ce0489d49c2b6a97d35cff5b1b3 |
#!/usr/bin/env python2
desc="""Report frequency of editing from individual reads.
CHANGELOG:
v1.0
-
TBD:
"""
epilog="""Author:
l.p.pryszcz+git@gmail.com
Warsaw, 2/12/2015
"""
import argparse, os, re, sys
from datetime import datetime
import subprocess
import numpy as np
import pysam
def bed2intervals(handle, wi... | lpryszcz/bin | bam2editing_penetrance.py | Python | gpl-3.0 | 4,197 | [
"pysam"
] | 3e218357078d767f10c458d539adeb0113272f5cc0b4b5e7c22d19234376253e |
"""
Query the PDB for similar unit cell parameters
"""
__license__ = """
This file is part of RAPD
Copyright (C) 2010-2018, Cornell University
All rights reserved.
RAPD is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Softwar... | RAPD/RAPD | src/old_agents/rapd_agent_cell.py | Python | agpl-3.0 | 29,862 | [
"ADF"
] | 677bdcf4f2dd308726372ea4bb5512fe82f9a7647625c99be3ec5112eef23da4 |
#!/usr/bin/python
import fileinput
import string
import sys
import os
import subprocess
def perm(l):
sz = len(l)
if sz <= 1:
return [l]
return [p[:i]+[l[0]]+p[i:] for i in xrange(sz) for p in perm(l[1:])]
def nwchem_triples_usage():
# 123456 is included just for verification; it is not used i... | jeffhammond/spaghetty | trunk/generator6.py | Python | bsd-2-clause | 36,412 | [
"NWChem"
] | f90e9cc7b366ee2c75118630275fd9aac27bf536eea0337a86db057168da9d3c |
#!/usr/bin/env python3
# Version 1.1
# Author Alexis Blanchet-Cohen
# Date: 09/06/2014
import argparse
import glob
import os
import os.path
import pandas
import subprocess
import util
# Read the command line arguments.
parser = argparse.ArgumentParser(description="Generates GATK IndelRealigner scripts.")
parser.add_... | blancha/abcngspipelines | exomeseq/indelrealigner.py | Python | gpl-3.0 | 3,024 | [
"BWA"
] | a3a1bb5aecbcccaac5ff78e93500bf7d3c6bc156097a657a5c068e37c828b834 |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-today OpenERP SA (<http://www.openerp.com>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms o... | jaggu303619/asylum | openerp/addons/project/project.py | Python | agpl-3.0 | 75,113 | [
"VisIt"
] | 3cd839d51fa86baf532f905811698ef3eeb50f73095d18ff013a16b7d0b85e6d |
##################################################################
# Code for networks and whatnot to use in variationalish stuff. #
##################################################################
# basic python
import numpy as np
import numpy.random as npr
from collections import OrderedDict
import cPickle
# the... | Philip-Bachman/ICML-2015 | InfNet.py | Python | mit | 27,786 | [
"Gaussian",
"NEURON"
] | 0bbb9785bf38a02c5d5db47d3f8c9e5230602b1851495bdb2d7f06c481d43002 |
# -*- coding: utf-8 -*-
# run_hhcell.py ---
#
# Filename: run_hhcell.py
# Description:
# Author:
# Maintainer: P Gleeson
# Version:
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
#
#
#
# Change log:
#
#
#
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU... | BhallaLab/moose | moose-examples/neuroml2/run_hhcell.py | Python | gpl-3.0 | 4,300 | [
"MOOSE"
] | 4176623b67c26d3b832f44598ee15e30e24d73b9bd7971a032585ebedb2927dd |
import csv
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.patches as patches
import matplotlib.path as path
import matplotlib.dates as mdates
from dateutil.parser import parse
from datetime import datetime
from datetime import timedelta
# import urllib.request
import pytz
import codecs
from matplo... | bearing/dosenet-raspberrypi | spectra_fitter.py | Python | mit | 24,564 | [
"Gaussian"
] | 5763955ed5fb11fa17a31573f3869ce7fbf66dff5dbef540431b7cc1ab7dc0e2 |
#_PYTHON_INSERT_SAO_COPYRIGHT_HERE_(2009)_
#_PYTHON_INSERT_GPL_LICENSE_HERE_
from itertools import izip
import logging
import os
import signal
from numpy import power, arange, array, abs, iterable, sqrt, where, \
ones_like, isnan, isinf, float, float32, finfo, nan, any
from sherpa.utils import NoNewAttributesAfter... | brefsdal/sherpa | sherpa/fit.py | Python | gpl-2.0 | 44,594 | [
"VisIt"
] | a28f9f2a4d24fef16354b5b52418481801b6d5e1b636ab2bcaf2540a38a9d18f |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/tools/tabulated.py | Python | gpl-3.0 | 1,838 | [
"ESPResSo"
] | 9d4bed9968b68c8b0a46543086abfd96a0a7ac995bb598f276a274b5df64bde7 |
### Adapted from:
## (c) Peter Norvig, 2010; See http://norvig.com/lispy.html
################ Symbol, Env classes
import os
import itertools
import uuid
import logging
import traceback, sys
#### Arast Libraries
import assembly as utils
import asmtypes
import wasp_functions as wf
logger = logging.getLogger(__name__)... | kbase/assembly | lib/assembly/wasp.py | Python | mit | 19,952 | [
"BWA"
] | de1b7476baa4886f45de0f4770d9dac4ef16312c2e390add9c8f2889b4c6bfa2 |
"""
SDSS "Great Wall"
-----------------
Plotting the SDSS "great wall", a filament of galaxies visible by-eye in the
projected locations of the SDSS spectroscopic galaxy sample.
This follows a similar procedure to [1]_,
References
----------
.. [1] http://adsabs.harvard.edu/abs/2008ApJ...674L..13C
"""
# Author: Jake V... | astroML/astroML | examples/datasets/plot_great_wall.py | Python | bsd-2-clause | 1,071 | [
"Galaxy"
] | d4cd86e810e598d5f9f2bb376a92253166caea5ba8288aa00c210fbc0df2268f |
# Compiled by Charles Harris, dated October 3, 2002
# updated to 2002 values by BasSw, 2006
# Updated to 2006 values by Vincent Davis June 2010
# Updated to 2014 values by Joseph Booker, 2015
"""
Fundamental Physical Constants
------------------------------
These constants are taken from CODATA Recommended Values of ... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/scipy/constants/codata.py | Python | gpl-3.0 | 116,026 | [
"Avogadro",
"VisIt"
] | 0c125ebbafc18a04263839ff6d5d41320ad9a6c016f4aa0cab3a91dc4cbb824c |
#!/usr/bin/python
# -*- coding: utf-8 -*
import sys, os
import subprocess as sub
import multiprocessing
import time
import datetime
import logging
from optparse import OptionParser, OptionGroup
import pos_common
import pos_wrappers
class generic_workflow(object):
"""
A generic command-line workflow class.... | chrisfilo/poSSum | possum/pos_wrapper_skel.py | Python | mit | 25,152 | [
"Gaussian"
] | e4721ed7036116037c89cce9ef7c7b2cde7a8c7537d7489c8d79a28bd4a40e62 |
# See https://en.wikipedia.org/wiki/General_MIDI#Parameter_interpretations
# Generated by get_instruments.py
instruments = {
(1, "Acoustic Grand Piano", "piano"),
(2, "Bright Acoustic Piano", "piano"),
(3, "Electric Grand Piano", "piano"),
(4, "Honky-tonk Piano", "piano"),
(5, "Electric Piano 1", "... | milkey-mouse/swood | swood/instruments.py | Python | mit | 6,530 | [
"CRYSTAL"
] | 5448654fccb246c781526855f6f6b1cfaba00b70dbff7411e76663f4652570df |
# -*- coding: utf-8 -*-
import plotly.graph_objects as go
class MODiagram:
"""
A class to make plots of MO levels
Methods
-------
MODiagram(wfn)
Make a MO plot from a psi4 Wavefunction object
save(filename)
Save the plot to a figure file
"""
def __init__(self,
... | evangelistalab/forte | forte/utils/mo_diagram.py | Python | lgpl-3.0 | 10,881 | [
"Psi4"
] | 28e1d50bb2e35db42b65936778acfe3b441b0ec1131d4080d8e361a06e5e4a55 |
# Possible executions of this script
# ./yadempi script.py #interactive will spawn 3 additional workers
# mpiexec -n 4 ./yadempi script.py #non interactive
NSTEPS=5000 #turn it >0 to see time iterations, else only initilization TODO!HACK
#NSTEPS=50 #turn it >0 to see time iterations, else only initilization
import os... | cosurgi/trunk | examples/mpi/vtkRecorderExample.py | Python | gpl-2.0 | 2,159 | [
"VTK"
] | 686040a13e96d56532e99cae3879e3a08cbbbd6c9b152435f96d5859028db4c2 |
#!/usr/bin/env python
################################################################################
# gcn_dbinterface.py
# pyanalysis
#
# Created by Brian Baughman on 11/9/11.
# Copyright 2011 Brian Baughman. All rights reserved.
################################################################################
tr... | bbaugh/gcn-parser | gcn_dbinterface.py | Python | gpl-2.0 | 3,013 | [
"Brian"
] | 0afeb830181e07577bc901a907786a46016c18fa28c59c58f89ff51978ca22cd |
################################################################################
# Copyright (C) 2011-2012 Jaakko Luttinen
#
# This file is licensed under the MIT License.
################################################################################
import numpy as np
import matplotlib.pyplot as plt
import time
f... | SalemAmeen/bayespy | bayespy/demos/mog.py | Python | mit | 3,110 | [
"Gaussian"
] | bb79970f4e320351e4697f212bafb7aad97c0e3882e2f5ef860723c587ce34ba |
# -*- coding: utf-8 -*-
import os
import numpy as np
import pytest
from numpy.testing import assert_array_almost_equal
import pysteps
from pysteps import nowcasts
from pysteps.cascade.bandpass_filters import filter_gaussian
from pysteps.cascade.bandpass_filters import filter_uniform
from pysteps.cascade.decompositio... | pySTEPS/pysteps | pysteps/tests/test_cascade.py | Python | bsd-3-clause | 2,172 | [
"Gaussian"
] | c7e2a186e90569aac87bd4685febcb902a3611e17f23c9cf70c6f57ced35e4bd |
from __future__ import print_function, division
import unittest, numpy as np
from pyscf.nao.log_mesh import funct_log_mesh
from pyscf.nao.m_log_interp import log_interp_c
from timeit import default_timer as timer
class KnowValues(unittest.TestCase):
def test_log_interp_vv_speed(self):
""" Test the interpolatio... | gkc1000/pyscf | pyscf/nao/test/test_0202_log_interp_vv.py | Python | apache-2.0 | 1,363 | [
"PySCF"
] | 4f275054bdcc0e9bedc724d9da17ba689d611ce37fedbce44834b770fa2aade3 |
# Copyright 2014 Quip
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, softwar... | textpotential/aproximatebible | quip.py | Python | gpl-2.0 | 28,090 | [
"VisIt"
] | 3dd80a2484de49b3351c8eaf25f9cc2afc8474f306da4d6288b9c1b712d51e6b |
# Copyright (c) 2012, GlaxoSmithKline Research & Development Ltd.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# ... | bp-kelley/rdkit | Contrib/mmpa/cansmirk.py | Python | bsd-3-clause | 2,887 | [
"RDKit"
] | 3878b9c4d0ea496dba6cd1217f2a6548c984ec10e1f93c8687a4e3aaf284314d |
jmol = {
'h': [255, 255, 255],
'he': [217, 255, 255],
'li': [204, 128, 255],
'be': [194, 255, 0],
'b': [255, 181, 181],
'c': [144, 144, 144],
'n': [48, 80, 248],
'o': [255, 13, 13],
'f': [144, 224, 80],
'ne': [179, 227, 245],
'na': [171, 92, 242],
'mg': [138, 255, 0],
... | haozhangphd/genx-py3 | genx/plugins/add_ons/help_modules/atom_colors.py | Python | gpl-3.0 | 2,872 | [
"Jmol"
] | ec613bcb9fd175b7301f996a4d05bbd854b95def2d41a26a38ba481577cbb50a |
"""Class to run the full red-sequence calibration
"""
import os
import numpy as np
import fitsio
import copy
import re
from ..configuration import Configuration
from ..color_background import ColorBackgroundGenerator
from ..catalog import Entry, Catalog
from ..galaxy import GalaxyCatalog
from .selectspecred import Sel... | erykoff/redmapper | redmapper/calibration/calibrate.py | Python | apache-2.0 | 26,306 | [
"Galaxy"
] | 2f36aa876584ec805c33393939724608ffd9dbbb9da233448cd1ed2260696a79 |
# -*- coding: utf-8 -*-
# pylint: disable=invalid-name, too-many-instance-attributes
"""Copyright 2015 Roger R Labbe Jr.
FilterPy library.
http://github.com/rlabbe/filterpy
Documentation at:
https://filterpy.readthedocs.org
Supporting book at:
https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python
This is... | rlabbe/filterpy | filterpy/kalman/sigma_points.py | Python | mit | 16,341 | [
"Gaussian"
] | c4ae7452bf0a51e572ee233f1b17ea76186cf62b389b0ab9bac22b42d734370f |
# build_assistant/autogen/raw_events/EventCodeGenerator.py
#
# (C) Copyright 2014-present Cristian Dinu <goc9000@gmail.com>
#
# This file is part of Uniarchive II.
#
# Licensed under the GPL-3
from build_assistant.autogen.raw_events.AbstractEventCodeGenerator import AbstractEventCodeGenerator
from build_assistant.aut... | goc9000/uniarchive2 | build_assistant/autogen/raw_events/EventCodeGenerator.py | Python | gpl-3.0 | 5,968 | [
"VisIt"
] | 52ee49201ed7415fd156f4f2e2bef8be3fce80058b7c0e22d16153607abc88b0 |
from pathlib import PurePath
class LineCountInfo(object):
def __init__(self, total_lines, code_lines=0, comment_lines=0, blank_lines=0):
self.code_lines = code_lines
self.comment_lines = comment_lines
self.blank_lines = blank_lines
self.total_lines = total_lines
def get_code_li... | MarkZuber/DiskUsage | LineCountVisitor.py | Python | mit | 2,767 | [
"VisIt"
] | 5c8febf4d97674481fd5bbad1e86df36033ca217f8f0e499768f091c8de77913 |
from datetime import datetime
from django.contrib.auth.models import User
from django.conf import settings
from edc_constants.constants import YES
from ..exceptions import SpecimenError
class LabProfile(object):
name = None
# controller uses this to register the aliquot, receive,
# ... models so they... | botswana-harvard/lab-profile | lab_profile/classes/lab_profile.py | Python | gpl-2.0 | 6,100 | [
"VisIt"
] | b46ec8be9d16191dc0aa445edd883d1908b7ae7d255730c41915823db1fb60b5 |
class VehicleInfo(object):
def __init__(self):
"""
make_target: option passed to make to create binaries. Usually sitl, and "-debug" may be appended if -D is passed to sim_vehicle.py
default_params_filename: filename of default parameters file. Taken to be relative to autotest dir.
... | night-ghost/ardupilot | Tools/autotest/pysim/vehicleinfo.py | Python | gpl-3.0 | 11,808 | [
"Firefly"
] | dabce9453b18accb2ef0cfa7b08a8c9b0e0bd617f0ad9e04563e64ac7db4ad34 |
# -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Robert Layton <robertlayton@gmail.com>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Philippe Gervais <philippe.gervais@inria.fr>
# Lars Buitinck
... | herilalaina/scikit-learn | sklearn/metrics/pairwise.py | Python | bsd-3-clause | 46,964 | [
"Gaussian"
] | a8ee273437e2bd2465153f440f33cb4617a2b92d646c05f50622f8ca505760b2 |
import errno
import logging
import os
from abc import ABC, abstractmethod
from toil.lib.threading import ExceptionalThread
log = logging.getLogger(__name__)
class WritablePipe(ABC):
"""
An object-oriented wrapper for os.pipe. Clients should subclass it, implement
:meth:`.readFrom` to consume the readable... | BD2KGenomics/slugflow | src/toil/jobStores/utils.py | Python | apache-2.0 | 12,719 | [
"VisIt"
] | 275102260e5dafcc3b52656497ebad0b296b290b011b25ff8055a1a238f2cee1 |
# Author: Prabhu Ramachandran <prabhu@aero.iitb.ac.in>
# Copyright (c) 2008-2009, Enthought, Inc.
# License: BSD Style.
import numpy as np
import scipy
from traits.api import HasTraits, Range, Instance, \
on_trait_change, Array, Tuple, Str
from traitsui.api import View, Item, HSplit, Group
from mayavi import... | HPCGISLab/STDataViz | WorkingVersion/LibTry/MayaviGUI/Lorenz ui example.py | Python | bsd-3-clause | 4,745 | [
"Mayavi"
] | 98802bcc1689a103cbeeab53ce8c3282729e3d4ed4f56839ed9d8fe85c77ddc3 |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/nao/m_vxc_pack.py | Python | apache-2.0 | 2,427 | [
"PySCF"
] | c03e8c3f7ee9cf1f395e11190a1bd52551eb20321d9e019f75f6908be9d27fd8 |
from qepy import *
from yambopy import *
class hBN_1l_test():
"""
Input files for hBN monolayer for testing purposes (i.e., UNCONVERGED)
"""
def __init__(self,prefix='bn_TEST',pseudo_path='./pseudos'):
self.prefix = prefix
self.pseudos = pseudo_path
self.scfin = self.scf()
... | alexmoratalla/yambopy | materials/hbn_test.py | Python | bsd-3-clause | 2,481 | [
"Quantum ESPRESSO",
"Yambo"
] | 5115723e903eca799b1a6164351814f4d0c411173af8f9c9ff8b1506d2998ab8 |
import os
import numpy as np
import pytest
import numpy.testing as npt
from dipy.tracking.streamline import Streamlines
from dipy.io.stateful_tractogram import Space, StatefulTractogram
from dipy.io.utils import create_nifti_header
from dipy.testing.decorators import use_xvfb
from dipy.utils.optpkg import optional_pack... | FrancoisRheaultUS/dipy | dipy/viz/tests/test_apps.py | Python | bsd-3-clause | 4,461 | [
"VTK"
] | 33e38b943aee17a036aac2c2abbab820bf53c354681c77cd5f44d504de097229 |
# -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Mads Jensen <mje.mads@gmail.com>
# Jona Sa... | teonlamont/mne-python | mne/evoked.py | Python | bsd-3-clause | 50,206 | [
"Gaussian"
] | 79f8442c6c38b8362a126d8e0258a5cd43e267132abf5072959fd53ad149af5d |
from director.thirdparty import transformations
import vtkAll as vtk
import math
import numpy as np
try:
# This module uses libbot for some transformations.
# There is a pending branch that replaces libbot with the
# thirdparty.transformations module. For now, libbot is
# imported with a try/except to... | manuelli/director | src/python/director/transformUtils.py | Python | bsd-3-clause | 7,009 | [
"VTK"
] | 95b0859085bccecd68b81a43355ab4e658438ae6b249c635199c9a3c044d5fc4 |
#!/usr/bin/env python
"""
This file tests vtk.util.vtkImageExportToArray and
vtk.util.vtkImageImportFromArray. It tests the code by first
exporting a PNG image to a Numeric Array and then converts the array
to an image and compares that image to the original image. It does
this for all PNG images in a particular dir... | naucoin/VTKSlicerWidgets | Imaging/Testing/Python/TestNumericArrayImageData.py | Python | bsd-3-clause | 2,213 | [
"VTK"
] | f8a56b98d68887d7de7d07520dc53bc232e98e46df9add3bb2fc2652edf491b6 |
'''This script demonstrates how to build a variational autoencoder
with Keras and deconvolution layers.
Reference: "Auto-Encoding Variational Bayes" https://arxiv.org/abs/1312.6114
Copied from:
https://github.com/keras-team/keras/blob/master/examples/variational_autoencoder_deconv.py # @IgnorePep8
Original implement... | avolkov1/keras_experiments | examples/variational_autoencoder/variational_autoencoder_deconv.py | Python | unlicense | 7,692 | [
"Gaussian"
] | a31b472a24ad06c77b6038d368abcec116e3f71b373350030eece2e681a65e7d |
##################################################################
# Copyright 2018 Open Source Geospatial Foundation and others #
# licensed under MIT, Please consult LICENSE.txt for details #
##################################################################
"""List of know mimetypes"""
# List of known compl... | tomkralidis/pywps | pywps/inout/formats/__init__.py | Python | mit | 6,590 | [
"NetCDF"
] | 4064d65dcbfb39d6591eb1f8810447902bf53b426bd7096bab75ddc034407ed1 |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2014 Bitergia
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option) any later version.
#
# This progr... | MetricsGrimoire/Octopus | tests/test_puppet.py | Python | gpl-3.0 | 17,261 | [
"Octopus"
] | b07556a64391fe823fc016ad1b737bb7e08e66ea16694a459226147fdbfa239e |
import argparse
import logging
import os
import sys
import warnings
import numpy as np
import parmed
import intermol.gromacs as gmx
import intermol.lammps as lmp
import intermol.desmond as des
import intermol.amber as amb
import intermol.charmm as crm
import intermol.tests
# we have a number of "canonical" terms tha... | ctk3b/InterMol | intermol/convert.py | Python | mit | 29,297 | [
"Amber",
"CHARMM",
"CRYSTAL",
"Desmond",
"Gromacs",
"LAMMPS"
] | 209d87866632325ba3a98f33e3223566bb50d9a741ebb11e4d6f741848b818f0 |
# Spectral smoothing functionality
# To do:
# 3) add extra zero-padding for FFT algorithms so they don't go funky at the
# edges?
import numpy as np
from numpy.fft import fft, ifft, fftfreq, rfftfreq
__all__ = ["smoothspec", "smooth_wave", "smooth_vel", "smooth_lsf",
"smooth_wave_fft", "smooth_vel_fft",... | bd-j/prospector | prospect/utils/smoothing.py | Python | mit | 24,897 | [
"Gaussian"
] | dcaf0064ed1e104e679b4ef5cb6b4734555db8c510e9b7f6d7d703f817230c75 |
import cv2
import numpy as np
import math
from scipy.ndimage.filters import correlate
from scipy.signal import convolve2d
import superzoomit.misc.typeconv as tc
import superzoomit.misc.geotransform as gt
import superzoomit.misc.mattransform as mt
import superzoomit.misc.filter as filter
# % rff: autocorrelation mat... | caiotaniguchi/super-zoom-it | superzoomit/superres/wiener.py | Python | gpl-3.0 | 10,277 | [
"Gaussian"
] | 638c84c6863ec0534e226167e626e0803a69d762411fb23fe01e80863a3dcd1c |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack import *
class Neuron(Package):
"""NEURON is a simulation environment for single and networks o... | iulian787/spack | var/spack/repos/builtin/packages/neuron/package.py | Python | lgpl-2.1 | 7,230 | [
"NEURON"
] | 657f4050695bb5d04b0bf1f2c74e54c87d97843c5c320da03eae1377a7e01971 |
"""
pyNEAT
Copyright (C) 2007-2008 Brian Greer
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License, or (at your option) any later version.
This program is distributed in ... | liquidkarma/pyneat | pyNEAT/Innovation.py | Python | gpl-2.0 | 1,247 | [
"Brian",
"NEURON"
] | 42e9e23d1b728d37e122a729c4249a03a071f6ad673ef5341778636505f0791c |
#!/usr/bin/env python
"""
Convert GIO format to FASTA format.
Usage: gio_to_fasta.py gio_file_path fasta_file
Requirement:
biopython : http://biopython.org
"""
import sys, re, os
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio import SeqIO
def __main__():
try:
contig_files = o... | vipints/genomeutils | utils/gio_to_fasta.py | Python | bsd-3-clause | 1,257 | [
"Biopython"
] | dd1aea174c2f743d7fb2bf4035dda687046cfe26bc5eb33cc50761bf3faff2bc |
"""Find and deal with signatures in biological sequence data.
In addition to representing sequences according to motifs (see Motif.py
for more information), we can also use Signatures, which are conserved
regions that are not necessarily consecutive. This may be useful in
the case of very diverged sequences, where sig... | bryback/quickseq | genescript/Bio/NeuralNetwork/Gene/Signature.py | Python | mit | 8,972 | [
"Biopython"
] | 4b6f63b58a33102a7b28b54d36cd778cb792343140203772ff7c8bf01368e8df |
##############################################################################
##############################################################################
# Model specification
# Linear Gaussian state space model
#
# Copyright (c) 2016 Johan Dahlin
# liu (at) johandahlin.com
#
#######################################... | compops/gpo-abc2015 | models/lgss_3parameters.py | Python | mit | 11,474 | [
"Gaussian"
] | 15b7e3c2c1dda053a1890c1fbcb74cde7f43886a0fcfd81192d8ef5ec88cee57 |
### All lines that are commented out (and some that aren't) are optional ###
DB_ENGINE = 'sqlite:///db.sqlite'
#DB_ENGINE = 'mysql://user:pass@localhost/monocle'
#DB_ENGINE = 'postgresql://user:pass@localhost/monocle'
AREA_NAME = 'SLC' # the city or region you are scanning
LANGUAGE = 'EN' # ISO 639-1 codes ... | ZeChrales/Monocle | config.example.py | Python | mit | 18,693 | [
"VisIt"
] | 274500f421939045637fc3084389d4ff30d64542abffc28a3886ce1e5875bac4 |
"""Obtain phase space points at a given milestone as a prerequisite
for running a milestoning simulation.
"""
__all__ = ['prepare']
import copy
import logging
import os
import random
from typing import List, Optional, Set
from miles import (InitialTransition, Milestone, Simulation, TimestepperNAMD, TrajectoryParse... | clsb/miles | miles/prepare.py | Python | mit | 4,313 | [
"NAMD"
] | f7e018f67dc1596094865504f7b53210db729d0748220a1006b2f1f8c773e8fc |
"""
Each character on a computer is assigned a unique code and the preferred standard is
ASCII (American Standard Code for Information Interchange).
For example, uppercase A = 65, asterisk (*) = 42, and lowercase k = 107.
A modern encryption method is to take a text file, convert the bytes to ASCII, then
XOR each byte... | TheAlgorithms/Python | project_euler/problem_059/sol1.py | Python | mit | 4,890 | [
"ADF"
] | 4d2368aa1507b4f3c5d0981b5f5c811f6a29eda80de981d574441530d6e34a25 |
########################################################################
# $HeadURL$
########################################################################
""" DataIntegrityDB class is a front-end to the Data Integrity Database. """
__RCSID__ = "$Id$"
from DIRAC import gConfig, gLogger, S_OK
from DIRAC.Core.Base.DB ... | avedaee/DIRAC | DataManagementSystem/DB/DataIntegrityDB.py | Python | gpl-3.0 | 10,539 | [
"DIRAC"
] | b9b3ec66d91ce1bf3fdee12d2a333a8321839c527e3176d2c05b211ff85f10d5 |
##
# Copyright 2009-2016 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | ocaisa/easybuild-easyblocks | easybuild/easyblocks/n/netcdf.py | Python | gpl-2.0 | 6,459 | [
"NetCDF"
] | ea0365f18e2f973cfad2f232b5227821b7a8eda45266fa5453695704678ad74d |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kratman/psi4public | psi4/__init__.py | Python | gpl-2.0 | 3,387 | [
"Psi4"
] | 975fab9009e8c4160f3425862f1fa1db38cd14ffa22d2c985fbfc1e669f41779 |
from vtk import vtkImageImport
import numpy
def __numpyTypeToVtkType(dtype):
#from vtkType.h
if dtype == numpy.int8:
#define VTK_CHAR 2
return 2
elif dtype == numpy.uint8:
#define VTK_UNSIGNED_CHAR 3
return 3
elif dtype == numpy.int16:
#define VTK_SH... | ilastik/ilastik-0.5 | ilastik/gui/numpy2vtk.py | Python | bsd-2-clause | 1,685 | [
"VTK"
] | dcf33e113fb60d8a7fc611bf1c51ddfd75caa8a7f54b96795be2071fff009bc9 |
from copy import copy
from typing import List, Optional, Tuple
from gilgamesh.snes.instruction import (
Instruction,
InstructionID,
RetIndirectType,
StackManipulation,
)
from gilgamesh.snes.opcodes import AddressMode, Op
from gilgamesh.snes.registers import Registers
from gilgamesh.snes.state import St... | AndreaOrru/Gilgamesh | gilgamesh/snes/cpu.py | Python | bsd-2-clause | 18,291 | [
"VisIt"
] | bdead2fa807940bab1f5aa01168500cb18c743c56c6b2511ff8c4ca45aa5892b |
# Copyright 2019 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | google/pyctr | analysis/cfg.py | Python | apache-2.0 | 27,337 | [
"VisIt"
] | 890561e7483e8cf6fea8d7590885277e9eeccf0a78fa8a4a9fa358fcb7230763 |
"""
General purpose algorithms dealing with data structures.
"""
from __future__ import absolute_import
from collections import deque
from itertools import chain, cycle as cycle_, islice, repeat
from numbers import Integral
from taipan._compat import imap, izip_longest
from taipan.collections import ensure_countable,... | Xion/taipan | taipan/algorithms.py | Python | bsd-2-clause | 8,091 | [
"VisIt"
] | 0b489576488d5990d5fe88ac310ecf983e6b38021172e4ecfa45daca36f93c31 |
""" simple hello world job
"""
from DIRAC.Interfaces.API.Job import Job
from DIRAC.Interfaces.API.Dirac import Dirac
from DIRAC.DataManagementSystem.Utilities.DMSHelpers import DMSHelpers
j = Job()
j.setName( "helloWorld-test" )
j.setExecutable( "exe-script.py", "", "Executable.log" )
# <-- user settings
j.setCPUT... | andresailer/DIRAC | tests/Workflow/Regression/helloWorld.py | Python | gpl-3.0 | 522 | [
"DIRAC"
] | 63be8565b768895cfb8243f5b355d7aee288f7e9338a4e7850ff18612a5a787c |
import sys
import os
from netCDF4 import Dataset
import numpy as np
import subprocess
import math
import copy
from mpl_toolkits.axes_grid1 import make_axes_locatable
from ._quiver import _LogStart
_lg=_LogStart().setup()
from .scf import call_ffmpeg
"""
MkMov: sub-command "quiver" workhorse file.
"""
def interpola... | chrisb13/mkmov | commands/quiver.py | Python | gpl-3.0 | 19,824 | [
"NetCDF"
] | 7f63274281d7a7db1dac1cc9639d43904916db7808e0339c2420928df23b4151 |
import sys
from typing import Any, Dict, List, Optional, Tuple, Union
import attr
from pytest import importorskip
from omegaconf import II, MISSING, SI
from tests import Color
if sys.version_info >= (3, 8): # pragma: no cover
from typing import TypedDict
# attr is a dependency of pytest which means it's always... | omry/omegaconf | tests/structured_conf/data/attr_classes.py | Python | bsd-3-clause | 13,479 | [
"MOE"
] | 2b2d18796e3e929218d631b047837be8ebd958f8a26a0fa2affee1ffd7ec574e |
"""Tests for the binary tree module"""
import unittest
from binary_tree import BinaryTree
class test_BinaryTree(unittest.TestCase):
def setUp(self):
self.empty_tree = BinaryTree()
self.tree = BinaryTree()
self.tree.insert(3)
self.tree.insert(4)
self.tree.insert(2)
... | radome/algorithms_and_data_structures | Python/test/test_binary_tree.py | Python | apache-2.0 | 1,435 | [
"VisIt"
] | f290cfb01b1f57541d315ad56ddff057c259fa1c9f6efd81f4f345f0b70b1f27 |
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