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def birth(sim): """Similar to create agent, but just one individual""" age = 0 qualification = int(sim.seed.gammavariate(3, 3)) qualification = [qualification if qualification < 21 else 20][0] money = sim.seed.randrange(20, 40) month = sim.seed.randrange(1, 13, 1) gender = sim.seed.choice(['...
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def offer_better_greeting(): """Give player optional compliments.""" player = request.args["person"] # if they didn't tick box, `wants_compliments` won't be # in query args -- so let's use safe `.get()` method of # dict-like things wants = request.args.get("wants_compliments") nice_things...
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def get_trip_length(grouped_counts): """ Gets the frequency of the length of a trip for a customer Args: grouped_counts (Pandas.DataFrame): The grouped dataframe returned from a get_trips method call Returns: Pandas.DataFrame: the dataframe co...
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def extract_begin_end(data): """ Finds nif:beginIndex and nif:endIndex values. :param data: Data sent by the client. :return: Begin index and end index, -1 if error. """ try: begin = data.split("nif:beginIndex")[1].split("\"")[1] end = data.split("nif:endIndex")[1].split("\"")[1] ...
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def setup_parameters(): """ Helper routine to fill in all relevant parameters Note that this file will be used for all versions of SDC, containing more than necessary for each individual run Returns: description (dict) controller_params (dict) """ # initialize level parameters...
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def create_scope(api_client, scope, initial_manage_principal): """ Creates a new secret scope with given name. """ SecretApi(api_client).create_scope(scope, initial_manage_principal)
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def add_quick_closing(request_id, days, date, tz_name, content): """Create and store an acknowledgement-determination response followed by a closing-determination response for the specified request and update the request accordingly. Args: request_id: FOIL request ID days: days until reques...
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def get_operation(op, inplanes, outplanes, stride, conv_type): """Set up conv and pool operations.""" kernel_size = Ops.ops_to_kernel_size[op] padding = [(k - 1) // 2 for k in kernel_size] if op in Ops.pooling_ops: if inplanes == outplanes: return nn.AvgPool2d(kernel_size, stride=str...
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def test_create_subscription_metadata( caplog, auth_client, user, session, mock_stripe_customer ): """Successful checkout session updates metadata on Stripe Customer""" mock_stripe_customer.retrieve.return_value.metadata = {} mock_stripe_customer.retrieve.return_value.email = user.email url = revers...
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def encode( structure_klifs_ids, fingerprints_filepath=None, local_klifs_download_path=None, n_cores=1 ): """ Encode structures. Parameters ---------- structure_klifs_ids : list of int Structure KLIFS IDs. fingerprints_filepath : str or pathlib.Path Path to output json file....
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def log_like_repressed(params, data_rep): """Conv wrapper for log likelihood for 2-state promoter w/ transcription bursts and repression. data_rep: a list of arrays, each of which is n x 2, of form data[:, 0] = SORTED unique mRNA counts data[:, 1] = frequency of each mRNA count Not...
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def test_wrapper_calls_of_on_non_wrapper(): """ The ExtensionClass protocol is respected even for non-Acquisition objects. >>> class MyBase(ExtensionClass.Base): ... def __of__(self, other): ... print("Of called") ... return 42 >>> class Impl(Acquisition.Implicit): ...
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def selectBroadcastData(request): """ 检索黑广播 :param request: :return: """ pass
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def freq_mask(spec, F=30, num_masks=1, pad_value=0.): """Frequency masking Args: spec (torch.Tensor): input tensor of shape `(dim, T)` F (int): maximum width of each mask num_masks (int): number of masks pad_value (float): value for padding Returns: freq masked te...
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def prepare_file_hierarchy(path): """ Create a temporary folder structure like the following: test_find_dotenv0/ └── child1 ├── child2 │   └── child3 │   └── child4 └── .env Then try to automatically `find_dotenv` starting in `child4` ...
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def test_config_rule_errors(): # pylint: disable=too-many-statements """Test various error conditions in ConfigRule instantiation.""" client = boto3.client("config", region_name=TEST_REGION) # Missing fields (ParamValidationError) caught by botocore and not # tested here: ConfigRule.Source, ConfigRul...
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def collateReadCounts(inputs, outputs): """ Collate read counts from samtools flagstat output into a table. """ # Note expected input and output directories are effectively hard-coded in_dir = sambam_dir out_dir = results_dir flag_file = outputs[-1] print "Collating read counts" r...
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def cmd2dict(cmd): """Returns a dictionary of what to replace each value by.""" pixel_count = cmd[cmd.shape[0] - 1, cmd.shape[1] - 1] scaling_dict = dict() for i in range(0, cmd.shape[0]): scaling_dict[cmd[i, 0]] = round( ((cmd[i, 1] - cmd[0, 1]) / (pixel_count - cmd[0, 1])) * 255 ...
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def cached_part(query, cache=None): """Get cached part of the query. Use either supplied cache object or global cache object (default). In the process, query is into two parts: the beginning of the query and the remainder. Function tries to find longest possible beginning of the query which is cache...
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def exist_key(bucket: str, key: str) -> bool: """Exist key or not. Args: bucket (str): S3 bucket name. key (str): Object key. Returns: bool: Exist or not. """ try: s3.Object(bucket, key).get() except s3.meta.client.exceptions.NoSuchKey: return False ...
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def load_all_files(dir): """Returns all of the csharp source files.""" result = [] for root, dirnames, filenames in os.walk(dir): if 'obj\\' not in root and 'bin\\' not in root: for name in fnmatch.filter(filenames, '*.cs'): result.append(SourceFile(os.path.join(root, nam...
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def glove4gensim(file_dir): """ A function that modifies the pretrained GloVe file so it could be integrated with this framework [Note] You can download the vectors used in this code at https://nlp.stanford.edu/projects/glove/ (make sure to unzip the files) :param file_dir: file directory of th...
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def calculate_bleu_score(candidate_file: str, reference_file: str) -> float: """ Calculates the average BLEU score of the given files, interpreting each line as a sentence. Partially taken from https://stackoverflow.com/a/49886758/3918865. Args: candidate_file: the name of the file that contain...
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def _read_id_not_in_dict(read_ids, read_dict): """Return True if all read_ids in a list are not in the read_dict keys, otherwise False""" for read_id in read_ids: if read_id not in read_dict.keys(): return True return False
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def generate_spectra_products(dataset, prdcfg): """ generates spectra products. Accepted product types: 'AMPLITUDE_PHASE_ANGLE_DOPPLER': Makes an angle Doppler plot of complex spectra or IQ data. The plot can be along azimuth or along range. It is plotted separately the module an...
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def odds_or_evens(my_bool, nums): """Returns all of the odd or even numbers from a list""" return_list = [] for num in nums: if my_bool: if num % 2 == 0: return_list.append(num) else: if num % 2 != 0: return_list.append(num) re...
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def configure_db(): """Configure database. Establish the database, create an engine if needed, and register the models. """ global _DB_ENGINE if not _DB_ENGINE: _DB_ENGINE = session.get_engine(sqlite_fk=True) register_models()
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def p_ir_header(p): # type: (YaccProduction) -> None """ ir-header : ir-header-decl ir-header """ p[0] = [p[1]] + p[2]
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def demo(event=None, context=None): """Shows how to use the role functions.""" logging.basicConfig(level=logging.INFO, format='%(levelname)s: %(message)s') print('-'*80) print("AWS Identity and Account Management role cleanup.") print('-'*80) role = list_roles() print("Roles which have not b...
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def load_tas_lookup(): """Load/update the TAS table to reflect the latest list.""" logger.info('Loading TAS') loadTas()
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def local_mass_diagonal(quad_data, basis): """Constructs the elemental mass matrix, diagonal version Arguments: quad_data - Quadrature points and weights basis - Basis and respective derivatives Returns: Mass matrix M, where m_ii = \int_k psi_i psi_i """ return numpy.sum(qu...
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def xtrct_grid( input_path: Path, output_path: Path, xmin: float, xmax: float, ymin: float, ymax: float, n_levels: int = None, ): """Export a cropped spatial subdomain from an ARL packed file.""" # Requires >=0.4 degree padding between the parent domain extent and crop domain # e...
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def create_saved_group(uuid=None): """Create and save a Sample Group with all the fixings (plus gravy).""" if uuid is None: uuid = uuid4() analysis_result = AnalysisResultMeta().save() group_description = 'Includes factory-produced analysis results from all display_modules' sample_group = Sa...
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def words_to_indexes(tree): """Return a new tree based on the original tree, such that the leaf values are replaced by their indexs.""" out = copy.deepcopy(tree) leaves = out.leaves() for index in range(0, len(leaves)): path = out.leaf_treeposition(index) out[path] = index + 1 r...
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def get_stoplist_names(): """Return list of stoplist names""" config = configuration() return [name for name, value in config.items('stoplists')]
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def any_(criterions): """Return a stop criterion that given a list `criterions` of stop criterions only returns True, if any of the criterions returns True. This basically implements a logical OR for stop criterions. """ def inner(info): return any(c(info) for c in criterions) return in...
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def make_movie_noah(imgname, movname, indexsz='05', framerate=10, imgdir=None, rm_images=False, save_into_subdir=False, start_number=0, framestep=1): """Create a movie from a sequence of images using the ffmpeg supplied with ilpm. Options allow for deleting folder automatically after making movie...
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def validate_basic(params, length, allow_infnan=False, title=None): """ Validate parameter vector for basic correctness. Parameters ---------- params : array_like Array of parameters to validate. length : int Expected length of the parameter vector. allow_infnan : bool, opti...
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def unsorted_segment_sum(data, segment_ids, num_segments): """ Computes the sum along segments of a tensor. Analogous to tf.unsorted_segment_sum. :param data: A tensor whose segments are to be summed. :param segment_ids: The segment indices tensor. :param num_segments: The number of segments....
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def plot_classmap(VGGCAM_weight_path, img_path, label, nb_classes, num_input_channels=1024, ratio=16): """ Plot class activation map of trained VGGCAM model args: VGGCAM_weight_path (str) path to trained keras VGGCAM weights img_path (str) path to the image for which we get the a...
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def create_parameters(address: str) -> dict: """Create parameters for address. this function create parameters for having request from geocoder and than return dictionary of parameters Args: address (str): the address for create parameters Returns: dict: takes the api key and Geoc...
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def test_remove_connected_item(): """Test adding canvas constraint.""" canvas = Canvas() from gaphas.aspect import ConnectionSink, Connector l1 = Line(canvas.connections) canvas.add(l1) b1 = Box(canvas.connections) canvas.add(b1) number_cons1 = len(canvas.solver.constraints) b2 ...
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def make_default_storage_backend_connected_handler(): """Set the default storage-backend.connected state so that the default handler in layer-openstack can run. Convoluted, because charms.reactive will only run handlers in the reactive or hooks directory. """ reactive.set_state('charms.openstack...
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def convert_upsample(builder, layer, input_names, output_names, keras_layer): """Convert convolution layer from keras to coreml. Parameters ---------- keras_layer: layer A keras layer object. builder: NeuralNetworkBuilder A neural network builder object. """ # Get input and...
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def standardizeName(name): """ Remove stuff not used by bngl """ name2 = name sbml2BnglTranslationDict = { "^": "", "'": "", "*": "m", " ": "_", "#": "sh", ":": "_", "α": "a", "β": "b", "γ": "g", " ": "", "+": "...
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def _learning_rate_decay(hparams, warmup_steps=0): """Learning rate decay multiplier.""" scheme = hparams.learning_rate_decay_scheme warmup_steps = tf.to_float(warmup_steps) global_step = tf.to_float(tf.train.get_or_create_global_step()) if not scheme or scheme == "none": return tf.constant(1.) tf.log...
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def nextjs_build_action(ctx, srcs, out): """Run a production build of the vite project Args: ctx: arguments description, can be multiline with additional indentation. srcs: source files out: output directory """ # setup the args passed to vite launcher_args = ctx.ac...
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def new_model(save_dir, integer_tokens, batch_size=128, vocab_size=50000, embedding_size=128, num_negative=64, num_steps=100001, num_skips=2, skip_window=1): """ Create a new Word2Vec model with token vectors generated in the 'tokens' step. Parameters ---...
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def read_junction_report(filename: Union[str, Path]) -> Tuple[str, List[str]]: """ tab-delimited with header: chr left right strand num_transcript num_sample genome annotation label return: dict of label --> records with that label """ with open(filename, "r") as fi: ...
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def Register_User(): """Validates register form data and saves it to the database""" # Check if the fields are filled out if not (request.form['username'] and request.form['email'] and request.form['password'] and request.form['passwordConf']): return redirect(url_for('Register', message = "Please ...
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def check_events(ai_settings, screen, ship, bullets): """响应按键和鼠标事件""" for event in pygame.event.get(): if event.type == pygame.QUIT: sys.exit() elif event.type == pygame.KEYDOWN: check_keydown_events(event, ai_settings, screen, ship, bullets) elif event.type == py...
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def test_x_wrong_ndims(): """Test that a runtime error is thrown when x has the wrong shape.""" z = np.zeros((0, 2)) x = [[np.array([0., 0.]), np.array([[1., 0.]]), np.array([[0., 1.]]), np.array([[1., 1.]])], [z, z, z, z], [z], []] assert_failure(x=x)
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def extreme_rank(df, col, n, bottom=True, keep=[]): """ Calculate the n top or bottom of a given series """ t = df[list(keep)+[col]].sort_values(col, ascending=bottom).iloc[:30] count = t['NO_MUNICIPIO'].value_counts() count.name = '#' perc = t['NO_MUNICIPIO'].value_counts(nor...
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def ss_octile(y): """Obtain the octile summary statistic. The statistic reaches the optimal performance upon a high number of observations. According to Allingham et al. (2009), it is more stable than ss_robust. Parameters ---------- y : array_like Yielded points. Returns ----...
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def englishToFrench(englishText): """Translates English to French""" model_id='en-fr' fr_text = language_translator.translate( text=englishText, model_id=model_id).get_result() return(fr_text['translations'][0]['translation'])
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def calc_out_of_plane_angle(a, b, c, d): """ Calculate the out of plane angle of the A-D vector to the A-B-C plane Returns the value in radians and a boolean telling if b-a-c are near-collinear """ collinear_cutoff = 175./180. collinear = 0 if abs(calc_angle(b, a, c)) > np.pi ...
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async def median(ctx, *args): """ Generate median from given dataset. Returns the median for the given array or a dataframe containing means for every column """ param_def = {"fcai": "False", "tpose": "False", "dataframe": ""} argchecked = check_args(param_rec=args, param_def=param_def) if...
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def compute_distances(X, Y): """ Computes the Mahalanobis distances between X and Y, for the special case where covariance between components is 0. Args: X (np.ndarray): 3D array that represents our population of gaussians. It is assumed that X[0] is the 2D matrix contai...
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def third_level_command_3(): """Third level command under 2nd level 2"""
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def test_assure_valid_device_configuration(): """Test if invalid configurations are updated correctly""" conf = { CONF_USERNAME: "bbbrrrqqq@exa@mple.com", CONF_PASSWORD: "PasswordPassword", "test": "test2", CONF_DEVICES: [ {CONF_TOKEN: "ABCDEF"}, {CONF_TOK...
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def op_item_info(): """Helper that compiles item info spec and all common module specs :return dict """ item_spec = dict( item=dict( type="str", required=True ), flatten_fields_by_label=dict( type="bool", default=True ), ...
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def unpack_condition(tup): """ Convert a condition to a list of values. Notes ----- Rules for keys of conditions dicts: (1) If it's numeric, treat as a point value (2) If it's a tuple with one element, treat as a point value (3) If it's a tuple with two elements, treat as lower/upper li...
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def run(doc, preset_mc: bool): """Create Graph through classfication values.""" mc = doc._.MajorClaim adus = doc._.ADU_Sents if isinstance(mc, list): mc = mc[0] if mc == []: mc = adus.pop(0) elif not mc: mc = adus.pop(0) relations = compare_all(adus, mc) ...
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def get_wfs_with_parameter(parameter, wf_class='Workflow'): """ Find workflows of a given class, with a given parameter (which must be a node) :param parameter: an AiiDA node :param wf_class: the name of the workflow class :return: an AiiDA query set with all workflows that have this parameter ...
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def find_checkpoint_in_dir(model_dir): """tf.train.latest_checkpoint will find checkpoints if 'checkpoint' file is present in the directory. """ checkpoint_path = tf.train.latest_checkpoint(model_dir) if checkpoint_path: return checkpoint_path # tf.train.latest_checkpoint did not find a...
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def map_iou(boxes_true, boxes_pred, scores, thresholds = [0.4, 0.45, 0.5, 0.55, 0.6, 0.65, 0.7, 0.75]): """ Mean average precision at differnet intersection over union (IoU) threshold input: boxes_true: Mx4 numpy array of ground true bounding boxes of one image. bbox format: (x1...
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def draw_output_summary(model): """ reads the data saved in the model class and depending on this data chooses a visualization method to present the results with the help of draw_optimization_overview """ if 'time_series' in model.log: # no optimization has happend. # hence...
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def _Userinfo(args): """Print the userinfo for this token, if possible.""" userinfo = apitools_base.GetUserinfo( oauth2client.client.AccessTokenCredentials(args.access_token, 'oauth2l/1.0')) if args.format == 'json': print(_PrettyJson(userin...
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def ShowSkmemArena(cmd_args=None) : """ Show the global list of skmem arenas """ i = 1 arhead = kern.globals.skmem_arena_head for ar in IterateTAILQ_HEAD(arhead, "ar_link") : format_string = "{:>4d}: 0x{:<08x} {:<6s} {:>5d} KB \"{:<s}\"" print format_string.format(i, ar, SkmemArena...
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def general_spline_interpolation(xs, ys, p, knots=None): """ NOTE: SLOW SINCE IT USES B() xs,ys: interpolation points p: degree knots: If None, use p+1-regular from xs[0] to slightly past x[1] returns cs, knots """ # number of interpolation points (and also control point...
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def number_from_string(s): """ Parse and return number from string. Return float only if number is not an int. Assume number can be parsed from string. """ try: return int(s) except ValueError: return float(s)
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def ennAvgPool(inplanes, kernel_size=1, stride=None, padding=0, ceil_mode=False): """enn Average Pooling.""" in_type = build_enn_divide_feature(inplanes) return enn.PointwiseAvgPool( in_type, kernel_size, stride=stride, ...
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def acceptable(*args, acceptables): """ If the characters in StringVars passed as arguments are in acceptables return True, else returns False """ for arg in args: for char in arg: if char.lower() not in acceptables: return False return True
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def get_confusion_matrix( ground_truth: np.ndarray, predictions: np.ndarray, labels: Optional[List[Union[str, float]]] = None) -> np.ndarray: """ Computes a confusion matrix based on predictions and ground truth vectors. The confusion matrix (a.k.a. contingency table) has prediction...
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def atom_explicit_hydrogen_valences(gra): """ explicit hydrogen valences, by atom """ return dict_.transform_values(atom_explicit_hydrogen_keys(gra), len)
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def get_average(pixels): """ Given a list of pixels, finds the average red, blue, and green values Input: pixels (List[Pixel]): list of pixels to be averaged Returns: rgb (List[int]): list of average red, green, blue values across pixels respectively Assumes you are returning in th...
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def send_transaction(to, value, token): """Sends transaction.""" password = getpass.getpass('Password from keystore: ') # Prompt the user for a password of keystore file configuration = Configuration().load_configuration() api = get_api() try: if token is None: # send ETH tran...
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def _leading_space_count(line): """Return number of leading spaces in line.""" i = 0 while i < len(line) and line[i] == ' ': i += 1 return i
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def _get_marker_indices(marker, line): """ method to find the start and end parameter markers on a template file line. Used by write_to_template() """ indices = [i for i, ltr in enumerate(line) if ltr == marker] start = indices[0:-1:2] end = [i + 1 for i in indices[1::2]] assert len(start)...
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def get_number_of_images(dir): """ Returns number of files in given directory Input: dir - full path of directory Output: number of files in directory """ return len([name for name in os.listdir(dir) if os.path.isfile(os.path.join(dir, name))])
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def seg_liver_train(config, train_df, val_df, gpu_id, number_slices, batch_size, iter_mean_grad, max_training_iters_1, max_training_iters_2, max_training_iters_3, save_step, display_step, ini_learning_rate, boundaries, values): """ train_file: Training...
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def test_keywords_and_flat_sections(keywords_and_flat_sections): """Test an input made of keywords and two unnested sections, interspersed.""" ref_dict = dict(reference) ref_dict["topsect"] = dict(reference) ref_dict["foo<bar>"] = dict(reference) grammar = getkw.grammar() tokens = lexer.parse_st...
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def get_wrapper_depth(wrapper): """Return depth of wrapper function. .. versionadded:: 3.0 """ return wrapper.__wrapped__.__wrappers__ + (1 - wrapper.__depth__)
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def apiTest(): """Tests the API connection to lmessage. Returns true if it is connected.""" try: result = api.add(2, 3) except: return False return result == 5
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def generations(pots, notes): """Return next generation of pots after rules in notes.""" next_gen = [] for pot in pots.keys(): pattern = '' for i in range(-2, 3): pattern += pots.get(pot + i, '.') next_gen.append((pot, notes[pattern])) # Check edges for new pots ...
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def signal_handler(sig, frame): """Handle ctrl+c interrupt. Without this handler, everytime a ctrl+c interrupt is received, the server shutdowns and proceeds to the next iteration in the loop rather than exiting the program altogether. """ print("************Received CTRL-C. Will exit in 1 second**...
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def get_distribution(dist_name): """Fetches a scipy distribution class by name""" from scipy import stats as dists if dist_name not in dists.__all__: return None cls = getattr(dists, dist_name) return cls
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async def async_remove_entry(hass, config_entry): """Handle removal of an entry.""" # remove persistent data config = config_entry.data name = config.get(CONF_NAME) filenames = give_persistent_filename(hass, name) if os.path.isfile(filenames.get("curve_filename")): os.remove(filenames...
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async def handle_countdown_reminders(): """ Handle countdowns after starting. Countdowns created afterwards are handled by the cd create command. """ reminders = [] for tag, cd in dict(time_cfg.data["countdown"]).items(): dt = pendulum.parse(cd["time"], tz=cd["tz"]) cd = dict(cd) ...
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def ece(y_probs, y_preds, y_true, balanced=False, bins="fd", **bin_args): """Compute the expected calibration error (ECE). Parameters: y_probs (np.array): predicted class probabilities y_preds (np.array): predicted class labels y_true (np.array): true class labels Returns: exp_ce (float): ...
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def _call_or_get(value, menu=None, choice=None, string=None, obj=None, caller=None): """ Call the value, if appropriate, or just return it. Args: value (any): the value to obtain. It might be a callable (see note). Keyword Args: menu (BuildingMenu, optional): the building menu to pass...
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def div(a, b, num_threads=None, direction='left'): """Divide multithreaded Args a (np.ndarray or scalar): Numpy array or scalar b (np.ndarray or scalar): Numpy array or scalar num_threads : Number of threads to be used, overrides threads as set by ...
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def is_shared_object(s): """ Return True if s looks like a shared object file. Example: librt.so.1 """ so = re.compile('^[\w_\-]+\.so\.[0-9]+\.*.[0-9]*$', re.IGNORECASE).match return so(s)
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def get_name(properties, lang): """Return the Place name from the properties field of the elastic response Here 'name' corresponds to the POI name in the language of the user request (i.e. 'name:{lang}' field). If lang is None or if name:lang is not in the properties Then name receives the local name v...
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def get_task(name): """Return the chosen task.""" tasks_json = load_json('tasks.json') return tasks_json[name]
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def exportToXml(stations): """ Export subRoutes data to XML """ root = ET.Element("stations") for aStation in stations: station = ET.SubElement(root, "station") station.set('lat', aStation['lat']) station.set('lon', aStation['lon']) station.set('name', aStation[...
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def aws_credentials(request: pytest.fixture, aws_utils: pytest.fixture, profile_name: str): """ Fixture for setting up temporary AWS credentials from assume role. :param request: _pytest.fixtures.SubRequest class that handles getting a pytest fixture from a pytest function/fixture. :param aws_u...
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def mean_predictions(predicted): """ Calculate the mean of predictions that overlaps. This is donne mostly to be able to plot what the model is doing. ------------------------------------------------------- Args: predicted : numpy array Numpy array with shape (Number points to predic...
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def test_serverspec_binary_file(host): """ Tests if shellcheck binary is file type. """ assert host.file(PACKAGE_BINARY).is_file
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def update_diskspace(dmfilestat, cached=None): """Update diskspace field in dmfilestat object""" try: # search both results directory and raw data directory search_dirs = [ dmfilestat.result.get_report_dir(), dmfilestat.result.experiment.expDir, ] if not ...
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