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import requests import json def get_ipaddresses(auth): """ Function to get list of ipaddresses from Aruba OS switch :param auth: AOSSAuth class object returned by pyarubaoss.auth :return list of ipaddresses :rtype list """ url_ipaddresses = "http://" + auth.ipaddr + "/rest/"+auth.version+...
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import numpy def get_hamming(codons): """ Get the hamming distance between codons, in {0, 1, 2, 3}. @param codons: sequence of lower case codon strings @return: matrix of hamming distances """ ncodons = len(codons) ham = numpy.zeros((ncodons, ncodons), dtype=int) for i, ci in enumerate...
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def generate_fibonacci_series(n): """Generate fibonacci series from 0 to nth term args: n->nth term of fibonnaci series Returns: A list of numbers of fibpnacci series to the nth term """ n1 = 0 n2 = 1 count = 0 fibonacci_series = [] if not isinstance(n, int):...
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def generate_catalog_mags(instrument_mags, color, model): """ Generate catalog magnitudes from instrumental magnitudes given a model that relates the two. """ return instrument_mags + model(color)
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import logging import sys def setup_logging(log_name,log_level): """Return logger params: log_name, log_level returns: logger """ log_format="%(asctime)s - %(levelname)s - %(filename)s - %(lineno)d" logging.basicConfig(level=log_level.upper(), format=log...
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import os def ReadLsbRelease(sysroot): """Reads the /etc/lsb-release file out of the given sysroot. Args: sysroot: The path to sysroot of an image to read sysroot/etc/lsb-release. Returns: The lsb-release file content in a dictionary of key/values. """ lsb_release_file = os.path.join(sysroot, 'etc...
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from typing import List def generateBasisIndexList(basisStrList: List[str], sysLevel: int) -> List[int]: """ Return a list of integers which indicates the basis indices according to the input basis string list. For example, ``generateBasisIndexList(['00', '01', '10', '11'], 3)`` will return: ``[0, 1, ...
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def get_urn_from_raw_update(raw_string): """ Return the URN of a raw group update Example: urn:li:fs_miniProfile:<id> Example: urn:li:fs_updateV2:(<urn>,GROUP_FEED,EMPTY,DEFAULT,false) """ return raw_string.split("(")[1].split(",")[0]
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def standardize_action(org_action): """if status is not book or change the flight number will be empty. name is always required.""" # some human raters will end a name with . or , # since names in intent are standarlized (with - being replaced by space), # it will not be necessary to consider - again in the a...
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def convert_into_delta_times(score): """ Transform start_time into delta_time and returns new score """ return list(map( lambda super_event: ( [ super_event[1][0]-super_event[0][0], super_event[0][1] ]), # [ [1, 2], [3, 4] ] -> [ [2, 2] ] ...
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def close_window(driver, w): """Close the window associated with the given window handle.""" driver.switch_to.window(w) return driver.close()
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import os def _get_job_dir(output_path: str, job_name: str) -> str: """Returns Beam processing job directory.""" return os.path.join(output_path, job_name)
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def disable(f): """Mark a test as disabled.""" f.__test__ = False return f
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import os import sqlite3 def create_db(dbFile, createSQLdict, LF=None): """ Create an empty SQLite3 database on disk. """ if os.path.exists(dbFile): os.remove(dbFile) try: conn = sqlite3.connect(dbFile) cursor = conn.cursor() for sql in createSQLdict.values(): ...
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def get_command(filename, box, speedup=1.0, extension="mp4"): """Creates ffmpeg command which crops and speeds up movie (if desired).""" outfile = filename.split(".") outfile = ".".join(outfile[:-1] + ["cropped", extension]) w, h, l, t = (box[key] for key in ["width", "height", "left", "top"]) retu...
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from typing import List from typing import Tuple def tuple_zip(list1: List, list2: List) -> List[Tuple]: """Creates tuples of elements having same indices from two lists. doctests: >>> tuple_zip([1, 2], ['x', 'y']) [(1, 'x'), (2, 'y')] >>> tuple_zip([1, 2, 3, 4], ['a', 'b', 'c', 'd']) [(1, 'a...
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def NoneSafeType(_type): """ A hack for a "None-safe" typecaster. Given a type, it casts all values to that type as the type would, except that None is always cast to None. """ def caster(value): if value is None: return None else: return _type(value) ...
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import sys def remap(data, mapping, verbose=False): """ Map from the mapping file to the data file. In this step we figure out where on the tree we should place the color strip :param data: the data dictionary where the metagenome read id is the key and the label is the value :param mapping: the m...
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def find_scale_to_fit(im, shape): """Finds the scale that makes the image fit in the rect""" w, h = im.shape[1], im.shape[0] target_w, target_h = shape[1], shape[0] scale = 1.0 if target_w is not None: scale = min(scale, target_w / float(w)) if target_h is not None: scale = min(s...
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import inspect def get_function_args(inspected_function): """ Finds the arguments that could be passed into the specified function :param inspected_function: :return: """ arg_spec = inspect.signature(inspected_function) args = list(arg_spec.parameters.keys()) return args
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def grid_round(x, spacing): """Rounds distances into discrete numbers of grid intervals""" n = 1 / spacing return(round(x*n)/n)
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import os import json def load_json(filepath): """Parse json file to dict""" if not os.path.isfile(filepath): raise ValueError('File could not find in %s' % filepath) with open(filepath, 'r') as fp: config = json.load(fp) return config
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def rk4(lhs, dt, function): """ :param lhs: previous step state. :param dt: delta t. :param data_type: "ex1" or "ex2". :return: Runge–Kutta 4th order method. """ k1 = dt * function(lhs) k2 = dt * function(lhs + k1 / 2.0) k3 = dt * function(lhs + k2 / 2.0) k4 = dt * function(lhs ...
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def isTruthy(value): """Converts any value to a boolean value; just uses the 'bool' built-in function, except that strings like 'FALSE', 'false' and 'False', and strings that are numeric values equal to 0, return False. """ if str(value).lower() == 'false': return False try: ...
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import subprocess def RunCommand(command): """ Runs commands frequently seen in scripts. These are usually a sequence of commands connected by pipes, so we use shell=True """ # logger.info("Running the command\n{0}".format(command)) if command.endswith('|'): command = command.rstrip('|') ...
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def insert_new_targets(start, end, make_lines, targets): """ Insert new targets in Makefile between mkgen annotations """ return make_lines[: start + 1] + targets + make_lines[end:]
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def TransMatrix(demand, c): """Constriuct transition matrix. If capacity < requests then remainder requests left in queue. """ D = [] max = 999 for k in range(max+1): row = [0 for i in range(max)] if k <= c: row[0:len(demand)-1] = demand D.append(row...
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def p2a(p, m1, m2): """ It computes the separation (Rsun) given m1 (Msun), m2 (Msun) and p (days). """ yeardy=365.24 AURsun=214.95 p = p/yeardy a = AURsun*(p*p*(m1 + m2))**(1./3.) return a
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import yaml def yaml_as_python(val): """Convert YAML to dict""" try: return yaml.safe_load_all(val) except yaml.YAMLError as exc: return exc
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def sanitize_label(text: str) -> str: """ remove risky charactger in a latex label :param text: :return: """ for c in "%.|_#[]@": text = text.replace(c, "-") return text
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def build_complement(dna): """ :param dna: str, the DNA sequence to be converted :return: str, the complement strand of the DNA sequence """ ans = '' for base in dna: if base == 'A': ans += 'T' elif base == 'T': ans += 'A' elif base == 'C': ...
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def calculate_bootstrap(bootstrap_size, length): """ Calculate the bootstrap size for the data of given length. Parameters ---------- bootstrap_size : int, float, default=None Bootstrap size for training. Must be one of: - int : Use `bootstrap_size`. - float : Use `bootstrap_size * n_samples`. - None :...
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from subprocess import check_output def call_git(args, verbose=False): """ Helper function for calling a 'git' command. @param args: list of arguments to the git shell script. @return string stdout of git """ if isinstance(args,str): args = args.split() if verbose: print ("...
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def _pandas_sort_pre_017(df, by, *args, **kwargs): """Use sort() to sort a DataFrame""" return df.sort(*args, columns=by, **kwargs)
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def remove_diacritics(name): """Returns name without diacritics and inserted latin letters. Arguments: name -- word to have diacritics removed """ return name.replace(u'ą', 'a').replace(u'ć', 'c').replace(u'ę', 'e').replace(u'ł', 'l')\ .replace(u'ń', 'n').replace(u'ó', 'o').repla...
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def totM(m1, m2): """The total mass shows up in Kepler formulae, m1+m2 """ return( m1+m2 )
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def get_child_object_id(parent, number): """ Returning child object entity_id """ if number < 10: s_number = "0" + str(number) else: s_number = str(number) return "{}_{}".format(parent, s_number)
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from pathlib import Path def tmp_dir(tmp_path) -> Path: """ Returns `Path` to the temporary directory. If It not exists - creates and returns it. """ dir_path = tmp_path / "tmp_dir" if not dir_path.exists(): dir_path.mkdir() return dir_path
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from pathlib import Path def ORDER_NAME(path: Path) -> str: """パスのソート用関数です。名前でソートを行います。 """ return path.name
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def generate_batch_spec(mode, batch_size): """ Generates a spec describing how to draw batches Args: mode: one of ['train', 'test', 'val'] """ assert mode in ['train', 'test', 'val'] # on a more complicated dataset this would include useful arguments # such as whether to augment the data...
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def get_star_column_number(line): """ For a line in a star file describing a column entry (e.g., '_rlnEstimatedResolution #5'), retrieve the value of that column (e.g. 5) """ column_num = int(line.split()[1].replace("#","")) return column_num
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import functools def data_source_generator(name=None, **properties): """Decorator for applying to a simple data source which directly returns an iterable/generator with the metrics for each sample. The function the decorator is applied to must take no arguments. """ def _decorator(func): ...
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from typing import Iterable from typing import List def flatten_lists(list_of_lists:Iterable) -> List: """ Flatten a list of iterables into a single list This function does not further flatten inner iterables. Parameters ---------- list_of_lists : typing.Iterable The iterable to flat...
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def format(str): """Format string to flow continuiously (without indents that have been inserted in order to make the docstring easy to follow""" arr = str.split('\n') arr = [item.strip() for item in arr] return " ".join(arr)
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def _convert_float32_to_float64(data): """ Converts DataArray values of float32 to float64 :param data: Xarray dataset of coverage data :returns: Xarray dataset of coverage data """ for var_name in data.variables: if data[var_name].dtype == 'float32': og_att...
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import struct def byte_2_int(byte_string, is_little_endian=False): """ 将byte(1个字节)转换成int。 :param byte_string: :param is_little_endian: :return: """ if is_little_endian: return struct.unpack('<B', byte_string)[0] return struct.unpack('>B', byte_string)[0]
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def create_reference_dictionaries(state_space): """Creates reference dictionaries for future referall""" state_to_index={} index_to_state={} for i in range(len(state_space)): state_to_index[state_space[i]]=i index_to_state[i]=state_space[i] return state_to_index, index_to_state
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def validate_required_fields(json_data, required_fields=None): """ 验证必要的字段在json数据中是否存在 """ required_fields = required_fields or [] for field in required_fields: if field not in json_data: return False return True
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def bin_data(signal_list, bins, labels = [], group_sizes = []): """ """ assert all([type(item) == float or type(item) == int for item in signal_list]), "Signal should be provided as a float." assert type(bins) == int, "The number of groups (bins) should be an integer." assert type(labels) in [list, ...
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def _pisano_period_len(modulo): """ In number theory, the nth Pisano period, written π(n), is the period with which the sequence of Fibonacci numbers taken modulo n repeats. Args: modulo: modulo Returns: length of Pisano period """ init_array = [0, 1] idx = 1 while ...
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def potency_tensor(normal, slip): """ Given a fault unit normal and a slip vector, return a symmetric potency tensor as volume components (W11, W22, W33), and shear components (W23, W31, W12). """ v = [ normal[0] * slip[0], normal[1] * slip[1], normal[2] * slip[2], ] ...
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def extract_doi_suffix(protocol_doi): """ DOIs come in a format like 'dx.doi.org/10.17504/protocols.io.bazhif36'. We just need the 'protocols.io.bazhif36' element to form our query url. """ return protocol_doi.split("/")[2]
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def index(list_, i): """リストの要素をindexを指定して取得する""" return list_[int(i)]
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import re def fenced_bootstrap(block): """Set up a fenced block for bootstrap prettify highlighting.""" pattern = re.compile(r'```(?P<lang>\w+)?(?P<code>.*?)```', re.MULTILINE|re.DOTALL) match = pattern.match(block) if not match: return block lang = match.groupdict().get('lang', None) ...
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def find_token_by_position(tokens, row, column): """Given a list of tokens, a specific row (linenumber) and column, a two-tuple is returned that includes the token found at that position as well as its list index. If no such token can be found, ``None, None`` is returned. """ for index, tok in ...
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def read_txt_file(file_name): """Read the content of a text file with name `file_name` and return content as a list of lines""" with open(file_name, 'r') as file: lines = file.readlines() return lines
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def diff_snapshots(snap_origin, snap_dest): """ Returns the diff of snapshots new: Means the files to be created in destination modified: Means the files to be copied again in destination deleted: Means the files that has to be deleted in destination """ new = [] modified = [] for ...
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def read_program(file): """Deprecated""" with open(file, "r") as f: return [int(x) for x in f.readline().rstrip().split(",")]
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def intersect_line(p1, p2, p3, p4, strict=False): """ This function will intersect the two lines given by two points each boolean flag strict will determine if 2nd point belongs to line (so if line (( 0, 0) - (0,100) ) will intersect with line (-50,100)- (50,100) ) :param p1: 1st point of fir...
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def compress(compress_dict: dict[str, str], text: str) -> str: """Compression routine""" # Compression acc = [] for letter in text: acc.append(compress_dict[letter]) return ''.join(acc)
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from typing import List import math def chunks(arr, m) -> List[list]: """分割列表,但是子list元素个数尽可能平均 Args: arr: 待分割的list m: 分成几份 Returns: 分割后的每个子list都是返回结果list的一个元素 """ n = int(math.ceil(len(arr) / float(m))) return [arr[i : i + n] for i in range(0, len(arr), n)]
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import torch def flatten_parameters_wg(model): """ Flattens parameters of a model but retains the gradient :return: 1D torch tensor with size N, with N the model paramters """ return torch.cat([p.view(-1) for p in model.parameters()])
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def _dominance_constraints_from_feature_configs(feature_configs): """Returns list of dominance constraints in the given feature_configs.""" feature_names = [feature_config.name for feature_config in feature_configs] monotonic_dominances = [] for dominant_idx, dominant_feature_config in enumerate(feature_configs...
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import json def filter_json(data, nrow): """ return the first nrow rows of a json object, that can be structured as a list of rows [{"colname": val1, ..},...] or a dict with keys as column headings and vals as lists of column values {"col":[val1,val2,...], ...} """ if isinstance(data, list...
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import os def build_shows_uri(category, page): """Constructs the request URI for shows endpoint""" return "{}/category/{}/{}".format(os.getenv("BASE_URL"), category, page)
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def soma(a, b): """soma os numeros a e b >>> soma(1, 2) 3 >>> soma(8, 2) 10 """ return a + b
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from pathlib import Path from typing import Set from typing import List def _dir_diff(dir1: Path, dir2: Path, glob_pattern: str = '*') -> Set[Path]: """ returns files in dir1 that are not in dir2 (recursively) """ def listdir(directory: Path) -> List[Path]: return [path.relative_to(directory) ...
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def rpc_plugins_list(handler): """ Return information regarding enabled plugins in the server. :return: A dictionary representing enabled plugins and their meta-data. :rtype: dict """ plugin_manager = handler.server.plugin_manager plugins = {} for _, plugin in plugin_manager: plugins[plugin.name] = { 'des...
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def list_instruments(snap): """ List instruments from a snapshot """ return (list(snap['station']['instruments'].keys()) + list(snap['station']['components'].keys()))
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def insertion_sort(some_list): """ https://en.wikipedia.org/wiki/Insertion_sort Split the array into a "sorted" and "unsorted" portion. As we go through the unsorted portion we will backtrack through the sorted portion to INSERT the element-under-inspection into the correct slot. O(N^2) """ ...
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def Nop(x): """empty function for tree traversal""" return True
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import six import sys import hmac import hashlib def signature(secret, parts): """Generates a signature. All strings are assumed to be utf-8 """ if not isinstance(secret, six.binary_type): secret = secret.encode('utf-8') newparts = [] for part in parts: if not isinstance(part, six....
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import torch def calculate_birds_eye_view_parameters(x_bounds, y_bounds, z_bounds): """ Parameters ---------- x_bounds: Forward direction in the ego-car. y_bounds: Sides z_bounds: Height Returns ------- bev_resolution: Bird's-eye view bev_resolution bev_sta...
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def doNothing(rawSolutions): """ Contrary to its name, this function returns its input argument in a list structure, whose sole element is said input argument. """ return [rawSolutions]
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from typing import Dict from typing import Any from typing import List def validate_required_keys_for_add_asset(valid_json: Dict[str, Any], required_keys: List[str]) -> bool: """ Check if the required keys for adding an asset are present or not :param valid_json: The valid input asset JSON :param req...
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def get_fancylabel_Nd(fromNd, toNd): """ :param fromNd: :param toNd: :return: """ if fromNd > 0: varNameN = 'N$_{%d<d<%d}$' % (fromNd, toNd) else: varNameN = 'N$_{d<%d}$' % toNd return varNameN
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import imaplib def getImapMailboxCount(server, user, password, path="INBOX", searchSpec=None): """ imap_count(server,user,password,[path[,searchSpec]) Return the number of emails in the selected path. To use with imap_email Return -1 on error """ retVal=-1 with imaplib.IMAP4_SSL...
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import re def make_str_valid_varname(s): """makes a string a valid python identifier""" # remove invalid characters (except spaces in-between) s = re.sub(r"[^0-9a-zA-Z_\s]", " ", s).strip() # replace spaces by underscores (instead of dropping spaces) for readability s = re.sub(r"\s+", "_", s) ...
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def is_feature_overweighted_towards_class(feature_size_by_class_df, threshold=.99, feature_level=True): """ The intended use case is for seeing whether a categorical feature very strongly points towards a particular class v...
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import torch def _standard_wishart_tril(df: torch.Tensor, dim: int, shape: torch.Size): """ References ---------- - Sawyer, S. (2007). Wishart Distributions and Inverse-Wishart Sampling. https://www.math.wustl.edu/~sawyer/hmhandouts/Wishart.pdf - Anderson, T. W. (2003). An Introduction to Mu...
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def ang_symetry(m1, m2): """ Symetrisize the doses at angle theta and - theta. """ matrix = [] for row_index in range(len(m2)): result_row = [] for value_index in range(len(m2[0])): new_value = (m1[row_index][value_index] + m2[row_index][-1 - val...
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def check_duplicate(piece1, piece2): """ Check if the piece already allocated before """ if piece1.symbol == piece2.symbol and piece1.square in piece2.squares: return True else: return False
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def get_routes_len(routes_list): """return list of length of routes""" routes_length = [] for i, this_route in enumerate(routes_list): routes_length.append(this_route.get_length()) return routes_length
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def create_user(txn, email, password): """Creates a user node.""" query = """ MERGE (a:User {email: $email, password: $password}) """ return txn.run( query, email=email, password=password)
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from datetime import datetime def isday(yyyymmdd): """Is the yyyymmdd formatted as 'YYYY-MM-DD' such as '2020-03-18'""" try: datetime.strptime(yyyymmdd, '%Y-%m-%d') return True except ValueError: return False
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import re def parse_variable_declaration(srcline): """Return (name, decl) for the given declaration line.""" # XXX possible false negatives... decl, sep, _ = srcline.partition('=') if not sep: if not srcline.endswith(';'): return None, None decl = decl.strip(';') decl =...
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import platform import os def is_clipboard_supported(): """ Check whether the clipboard is supported. :returns: :data:`True` if the clipboard is supported, :data:`False` otherwise. """ return platform.system().lower() == "darwin" or bool(os.environ.get("DISPLAY"))
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def compute_actual_possible(results): """ Takes a result dict that has been output by compute metrics. Returns the results dict with actual, possible populated. When the results dicts is from partial or ent_type metrics, then partial_or_type=True to ensure the right calculation is used for calc...
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def get_exception_name(node): """ Find the name of an exception Args: node: Parso node containing the raises statement Returns: str: The exception name """ name = node.children[1] while not name.type == 'name': name = name.children[0] return name.value
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def is_static_pad(kernel_size: int, stride: int = 1, dilation: int = 1, **_) -> bool: """Can `same` padding for given args be done statically?.""" return stride == 1 and (dilation * (kernel_size - 1)) % 2 == 0
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def calculate_depth_loss(est_depths, gt_depths, loss_type="l1"): """Calculate loss between estimated depthmap and GT depthmap Args: est_depths: [B,1,H,W] gt_depths: [B,1,H,W] loss_type: Choose loss type from ['l1','l2'] """ assert est_depths.dim() == gt_depths.dim(), "inconsiste...
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import os def get_local_harmony_path(filepath): """From the provided path get the equivalent local Harmony path.""" basename = os.path.splitext(os.path.basename(filepath))[0] harmony_path = os.path.join(os.path.expanduser("~"), ".avalon", "harmony") return os.path.join(harmony_path, basename)
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import os def get_filename_and_extension_of(target_file): """Gets the base filename and extension of the target file. :param target_file: the complete path of the target file :returns: base filename and extension """ base_target_filename = os.path.basename(target_file) file_name, file_ext_wit...
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def _intersect_point2_circle(P, C): """ Returns True if point P lies with circle C. @type P : Point2 instance @type C : Circle instance """ return abs(P - C.c) <= C.r
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from typing import List def multiplicar_polinomios(p: List[float], q: List[float]) -> List[float]: """Multiplica dos polinomios :param p: polinomio :p type: list :param q: polinomio :q type: list :return: polinomio resultante :rtype: list """ if len(q) > len(p): p, q =...
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import random def new_random_date(): """ تولید یک تاریخ رندم نویسنده: ندا """ obj = {} # random.randint(1900,2020) y = random.randint(1000, 1001) m = random.randint(1, 12) d = random.randint(1, 30) obj.update({"year":y}) obj.update({"month":m}) obj.update({"day":d})...
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def reshape_pivot(df_in): """ Reduce df to crucial subset then pivot on cases and genes. """ df = (df_in[['case_barcode', 'Hugo_Symbol', 'mutation_count']] .copy() .pivot(index='case_barcode', columns='Hugo_Symbol', values='mutation_count') .fillna(0) ...
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import functools def creates(resource): """Decorator that adds resources to the appropriate cleanup list.""" def decorator(f): @functools.wraps(f) def wrapper(cls, *args, **kwargs): resp, body = f(cls, *args, **kwargs) if 'uuid' in body: cls.created_ob...
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from datetime import datetime from dateutil import tz def date_iso(date): """Convert a datetime string into ISO 8601 format. HTML date format agrees with ISO 8601 (see also, :RFC:`3339`), ie:: YYYY[-MM[-DD]][Thh[:mm[:ss[.s]]]T] For more information: * `Date and Time Formats: <https:/...
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import os import re def IsSaveDirectory (saveDirectory: str) -> bool: """ Get whether or not the specified save directory is a one that could be saved to or loaded from by this module. :param saveDirectory: The name or the path of a potential save directory. :type saveDirectory: str """ saveDirectory = os.path...
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