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def normalize_column_name(column_name): """ puts a CSV column name into a "normalized" form for comparison. """ norm_column_name = column_name if norm_column_name is not None: norm_column_name = norm_column_name.strip() norm_column_name = norm_column_name.lower() return norm_column_name
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def get_entry(root_node: dict, entry_name: str, default_value): """Gets the entry from the root node or creates one with the default value if none is existing in the root node Arguments: root_node {dict} -- Root node entry_name {str} -- Entry name default_value {[type]} -- Defa...
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import re def replace_aea_add_statements( content: str, old_string: str, new_string: str, type_: str ) -> str: """Replace statements of the type: 'aea add <type> <old_string>'.""" if type_ != "agents": content = re.sub( fr"aea +add +{type_} +{old_string}", f"aea add {type_}...
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import csv def gete2wlandw2el(datafile): """Get dict inputs for the EM algorithm. Parameters ---------- datafile: str path to datafile. The data file itself must be a csv file with 3 columns: question, worker, answer and the first row is the column names. Returns ----...
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def extract_info_attributes(turn): """Extract information attributes for current round using NLU annotations. Args: turn: Current round information Returns: get_attribute_matches: Information attributes """ user_annotation = eval(turn["transcript_annotated"]) assistant_annotati...
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import os def sys_kdialog_path(): """ Returns the path of kdialog if found in system $PATH """ steampath = os.environ['PATH'].split(':') syspath = [x for x in steampath if 'steam-runtime' not in x] for path in syspath: kdialog_path = os.path.join(path, 'kdialog') if os.path.exists...
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def unIndex(i, n, trunc): """ Converts a 1-dimensional index ``i`` with truncation ``trunc`` and number of modes ``n`` to a n-ary index. """ return [i // trunc**(n - 1 - m) % trunc for m in range(n)]
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from typing import List from typing import Tuple def get_matching_rules(rules: List[Tuple[str, ...]], word_to_lemmatize: str) -> List[Tuple[str, ...]]: """ filter rules that do not have affix ending in given word to lemmatize :param rules: list of rules :param word_to_lemmatize: str :return: list ...
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def to_list(results): """ Purpose: Simplify the ComputeSkipGrams result set :param results: a ComputeSkipsGrams result set looks like this [(u'Problems', u'installing'), (u'Problems', u'adobe'), (u'Problems', u'acrobat'), ... ,] :return: a list of results ...
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def recursive_string_find(pattern, string, start=0): """Recursive search function. Returns list of indices of `pattern` in `string`. """ pos = string.find(pattern, start) if pos == -1: # Not found! return [] # No need for else statement return [pos] + recursive_string_find(...
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def _est_transp_recursive(transp, name): """ Internal function used by `estimate_transposition` """ if isinstance(transp, int): return transp else: try: for pattern, result in transp: if pattern.search(name) is not None: # print('matc...
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def longest_common_prefix(string1, string2): """get the longest common prefix in two strings""" i = 0 while i < len(string1) and len(string2) and string1[1] == string2[i]: i += 1 return string1[:i]
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import math def get_color(a,cmin,cmax): """\ Convert a float value to one of a continuous range of colors. Rewritten to use recipe 9.10 from the Python Cookbook. """ try: a = float(a-cmin)/(cmax-cmin) except ZeroDivisionError: a=0.5 # cmax == cmin blue = min((max((4*(0.75-a),0.)),1.)) ...
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from typing import List def binary_search(arr: List[int], key: int) -> int: """Returns the index of a given key in a sorted array, or -1 if key not found. 1. Get left and right indices. 2. Calculate the mid. 3. Depending on whether the key is bigger or smaller than mid, update left of right. ...
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def convert_image_name(cur,imgNum): """ Converts imgNum to image file name without extension, as used in adjacency2 table Parameters: ----------- cur : MySQLdb cursors imgNum : str IMG_Number field entry for table image """ sql = ("select IMG_File " "from image " ...
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import os def enumerate_test_files(): """Build a list of all test .py files within Course Builder.""" ret = [] for dirpath, dirnames, filenames in os.walk('.'): for filename in filenames: if (dirpath.startswith('./modules/') and ( filename.endswith('_test.py') or ...
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import os def repo_with_submodule(git_identity, tempdir, checkouts, cc): """Repository with a submodule used to test detection of non-tracking branches in submodules. Will be created in a subdirectory of `tempdir`, whose path will be returned.""" # Create a new repository: d = os.path.join(tem...
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def multiprocess_fn(pool, fn, input_list, opts=[]): """ multiprocessing util tool """ results = [ pool.apply_async(fn, args=(x, ) + tuple(opts)) for x in input_list ] results = [p.get() for p in results] return results
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def force_num(string, output="int"): """ Input: string that ideally can be converted to a number Returns: converted number or 0 if conversion isn't possible """ convert_dict = {"int": int, "float": float} try: return convert_dict[output](string) except: return 0
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def horner(c,x): """ horner(c,x) Evaluate a polynomial whose coefficients are given in descending order in `c`, at the point `x`, using Horner's rule. """ n = len(c) y = c[0] for k in range(1,n): y = x*y + c[k] return y
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import re def sanitize(text): """ Remove non-urls word by word. """ text = text.strip() text = re.sub('\s\s+', ' ', text) tmp = '' for i in text.split(' '): if len(i) >= 5: if i.find('www.') != -1 or i.find('http') != -1: tmp += i + ' ' tmp = tmp.strip() tmp2 = '' f...
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from typing import Tuple from typing import Type from typing import Any def get_types_filter(desired_types: Tuple[Type[Any], ...]): """Returns a value filter that only keeps values with the given types.""" return lambda arg_value: arg_value.type in desired_types
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def _tf(word_occured_in_doc: int, total_words_in_doc: int) -> float: """Term frequency of a word in certain document. See: https://bit.ly/3zEDkMn """ assert word_occured_in_doc <= total_words_in_doc return word_occured_in_doc / total_words_in_doc
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def a_max(f, lst): """Finds max""" val_max = lst[0] for l in lst: if f(l) > f(val_max): val_max = l return val_max
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def pcmatrixrow(matrix, form, trans): """ Returns the row for the specified form and transposition level. Parameters ---------- matrix : tuple A pitch class matrix created by pcmatrix(). form : 'p' | 'r' | 'i' | 'ri' The row form to return: 'p' is prime, 'r' is retrogade, 'i...
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def _return_kwargs(dummy_req, **kwargs): """A dummy api call that simply returns its keyword arguments.""" return kwargs
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def apply_options(args): """Apply options""" if args.notifications: args.notifications = [ {"uid": notification} for notification in args.notifications ] return args
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from typing import Dict from typing import Callable def map_dict(d1: Dict, d2: Dict, f: Callable) -> Dict: """ Return f(d1.k, d2.k), a function of two dicts, matching on key. @param d1: dictionary A @param d2: dictionary B (must have same keys as d1) @param f: function @return: dictionary wher...
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def get_A_door_270_f_i(): """階層fにおける単位住戸iの主開口方位から時計回りに270°の方向に面した玄関ドア面積…………式(13d) Args: Returns: float: 階層fにおける単位住戸iの主開口方位から時計回りに270°の方向に面した玄関ドア面積(m2) """ return 0.0
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def html_code__macro_confluence(text): """ Wrap into html macro :param text: :return: """ return ('''\ <ac:structured-macro ac:name="html" ac:schema-version="1"> <ac:plain-text-body><![CDATA[{text}]]></ac:plain-text-body> </ac:structured-macro>...
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def get_clk_name(clk): """Return the appropriate clk name """ if clk == 'main': return 'clk_i' else: return "clk_{}_i".format(clk)
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def people_at_risk_without_test(tx): """ Method that queries the database for collecting all people that appeared in a covid exposure but haven't done the test yet :param tx: session :return nodes of person """ query = ( "MATCH(i:Person)-[inf: COVID_EXPOSURE]->(...
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import os import hashlib import mmap def file_checksum(fname): """Return md5 checksum of file. Note: only works for files < 4GB. Parameters ---------- filename : str File used to calculate checksum. Returns ------- checkum : str """ size = os.path.getsize(fname) ...
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def remove_xenon(te_img, xe_img, te_iso, xe_iso, clamp_neg=True): """ Based on the abundances of the Xe and Te isotopes in question, and the Xe images, calculates the expected component the Te image that actually comes from Xe and subtracts it. By default the function assumes any pixels that become ...
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def remove_utc(time_string): """ Removes UTC from end of time string. The purpose is to clean up time strings so they can be converted to Numpy datetime64 objects, since datetime64 cannot be initialized if if the input string includes the UTC marker. Args: - time_string (string): timestamp...
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def get_partial_source(source, begin, end, marks=None, nb_digits=None): """Extracts a few relevant lines from a source file. If the number of lines would exceed a certain limit (currently 7) the function is called recursively to only show the a few lines at the beginning and at the end. ""...
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from typing import Literal import os def shareable_scope(fixture_name, config) -> Literal["session", "function"]: """Return either session of function scope, depending on TEST_SHARED_FIXTURES envvar. This function can be used as a scope like this: @pytest.fixture(scope=shareable_scope) def myfixture(...
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def get_max_length(graphs): """ Get the max length among sequences. """ max_length = 0 for cascade_id in graphs: # traverse the graphs for max length sequence for sequence in graphs[cascade_id]: max_length = max(max_length, len(sequence[0])) return max_length
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def YUVtoYDbDr(Y, U, V): """ convert YUV (PAL) to RGB color :param Y: Y value (0;1) :param U: U value (-0.436-0.436) :param V: V value (-0.615-0.615) :return: YDbDr tuple (Y0;1 D-1.333-1.333) """ Db = 3.059 * U Dr = -2.169 * V return Y, Db, Dr
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def get_hyperparams(): """ Returns a list of hyperparams to run.""" # test some initial hyperparams # import itertools # for lr, wd, a in itertools.product([1e-4, 1e-3, 1e-2], [0, 1e-6, 1e-4], ['flips', 'full']) : # yield {'learning_rate': lr, 'weight_decay': wd, 'augmentation': a} # test b...
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def quantum_state_preparation_qiskit(circuit, parameters, n = 2): """ Parameters ---------- circuit: qiskit circuit parameters: n*2 array each row contains rx and ry parameters Returns ------- qiskit circuit """ q = circuit.qregs for i in r...
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def check_existence(species, specieslist, speciesidmap): """ check if the produced species is new in the DSD system :param species: produced species :param specieslist: list of species in the system :param speciesidmap: bi-directional map of species id and species canonical form :return: specie...
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def make_group(feature_df, key='friday_date'): """group maker for rank learning """ return feature_df.groupby(key).size().to_frame('size')['size'].to_numpy()
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def string_to_dict(string): """Return dictionary from string "key1=value1, key2=value2".""" if string: pairs = [s.strip() for s in string.split(",")] return dict(pair.split("=") for pair in pairs)
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def compare_match(server_names, certificate_sans): """ Compares if the certificate would secure this domain :param server_names: list of ServerName values :param certificate_sans: list of SAN's that would be secured by the certificate :return: """ matches = [] for server_name in server_n...
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def firstUniqChar_v3(s: str) -> int: """Slowest approach. Worst case complexity is O(n^2). Not much better than v2.""" for k, c in enumerate(s): if s.find(c) == s.rfind(c): return k return -1
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def dicts_equal(d1: dict, d2: dict) -> bool: """ Checks, whether the contents of two dicts are equal """ if d1 and d2: d2_keys = d2.keys() for key1, value1 in d1.items(): if key1 not in d2_keys: return False if d2[key1] != value1: r...
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from typing import List def deduplicate(image_data: List[bytes]) -> List[bytes]: """ Remove any identical images. """ print(f'Size before de-duplication: {len(image_data)}') uniques = [] for image in image_data: if not any(image == unique_image for unique_image in uniques): ...
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def _submit_run(webclient, config): """ Submits a single run using the web interface of the VerifierCloud. @return: the run's result """ run_result_future = webclient.submit_witness_validation(\ config.witness_file, config.program_file, config.configuration, config.cloud_user) webclien...
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def get_expr_for_end_pos(field_prefix="v.", pos_field="start", ref_field="ref"): """Compute the end position based on start position and ref allele length""" return "%(field_prefix)s%(pos_field)s + %(field_prefix)s%(ref_field)s.length - 1" % locals()
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def cell_value(cell): """Returns cell value or an empty string.""" value = getattr(cell, 'value', '') if value is None or str(value).startswith('='): # we don't calculate expressions return '' else: return str(value)
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def partition_app_list(app_list, n): """ :param app_list: A list of apps with models. :param n: Number of buckets to divide into. :return: Partition apps into n partitions, where the number of models in each list is roughly equal. We also factor in the app heading. """ num_rows = sum([1 + le...
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def reward_function(params): """ Example of rewarding the agent to stay inside two borders and penalizing getting too close to the objects in front """ all_wheels_on_track = params["all_wheels_on_track"] distance_from_center = params["distance_from_center"] track_width = params["track_width...
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def _parse_overscan_shape(rows, columns): """ Parse the number of overscan rows and columns into indices that can be used to reshape arrays. :param rows: The number of overscan rows. :type rows: int :param columns: The number of overscan columns. :type columns: ...
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import numpy def get_pdf_value(hist, edges, pos): """Get the value of a pdf for a given x :param hist: list of histogram values :param edges: list of bins :param pos: position on the support :return: pdf value """ ed = numpy.digitize(pos, edges).tolist() if ed > len(hist) - 1: ...
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def get_window_context(idx, tree, size): """Return a list of words within a 2*size window around the idx position.""" return [node.token for node in tree[max(0, idx-size) : idx] + tree[idx+1 : idx+size+1]]
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def _form_function_call(node): """ Reconstructs function call strings when making attribute access calls. """ node_vals = node.value output = "." for x, param in enumerate(node_vals[3::]): if param.dumps()[0] == "(": output = output[0:-1] + param.dumps() return ou...
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def value_in(value, choices): """Raise an exception if a value doesn't match one of the given choices.""" if value not in choices: raise ValueError("Expected one of %s, received %r." % (", ".join([repr(choice) for choice in choices]), value)) # pragma: no cover return value
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import collections def cal_frac_aneu(ploidy, ploidy_list): """ Calculate percentage of aneiploidy for each ploidy list Examples -------- >>> ploidy = [0, 1, 2, 4, 4] >>> ploidy_list = [0, 1, 2, 3, 4] >>> cal_frac_aneu(ploidy, ploidy_list) [0.2, 0.2, 0.2, 0, 0.4] Parameters --...
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import torch def signal_framing(signal, frame_length, frame_step, dim=-1): """ Framing with stride tricks (https://git-lium.univ-lemans.fr/Larcher/sidekit/-/blob/master/frontend/features.py) """ dim = dim % signal.dim() shape = list(signal.size()) nframes = (shape[dim] - frame_length + frame_step) // ...
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def build_texts_from_movies(path_to_movie_dat): """ Extracts genre text from movies.dat to create semantic embeddings :param path_to_movie_dat: :return: dict of text list keyed by movie_id """ texts = {} with open(path_to_movie_dat, "r", encoding="ISO-8859-1") as f: for line in f: ...
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import copy def override_repo_refs(repos, override_ref=None, overrides=None): """ Returns a new `repos` dictionary with the CLI overrides applied. """ overrides = overrides or {} if not override_ref and not overrides: return repos repos_copy = copy.deepcopy(repos) for repo, repo_d...
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import csv def get_entities(entities_file): """Returns an array of Medical Entities :param entities_file: Entities file csv :return: Array<[term:str, score:int]> """ entities = [] with open(entities_file, encoding='utf8') as ds1_file: csv_reader = csv.reader(ds1_file, delimiter=',') ...
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import os import json def unset_pending(version_folder): """Modify pending alert level to match true alert level. :param version_folder: Folder containing event.json file which needs to be unset. :returns: True if Changed, False If Alert_level Already Matches True_alert_level. """ eve...
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def some_different(instructions,bitpos): """Return True if there are ones and zeros and no don't cares, nonterminals or operand deciders""" zero = '0' one= '1' zeros = 0 ones = 0 for i in instructions: if i.ipattern.bits[bitpos].value == zero: zeros += 1 elif i.ipattern.bits[b...
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def secondsToMMSS(secs): """Convert number of seconds to the string ``mm:ss``. Note: If the number of minutes is greater than 100, it will be displayed as such. Args: secs (int): Number of seconds. Returns str: String in the format of ``mm:ss``. """ secs = int(secs) ...
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def image_property_delete(client, prop_ref, image_ref, session=None): """ Used internally by _image_property_create and image_property_update """ return client.image_property_delete(prop_ref=prop_ref, image_ref=image_ref)
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def pad_to_max_seq_length(ls, max_seq_length, pad_idx=0, pad_right=True, check=True): """Apply padding to an input sequence. Args: ls: sequence to pad. max_seq_length: max length up to which to apply padding. pad_idx: element to use for padding. pad_right: True if padding is app...
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import os def at_top_worktree(git_worktree): """ Return True if we are at the root of the worktree """ return os.getcwd() == git_worktree.root
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from subprocess import call import os import copy def load_ifortenv(ifortdir=None, x86=False): """ Load environment variables """ if ifortdir is None: if os.path.isdir('C:/Program Files (x86)/IntelSWTools/compilers_and_libraries' '/windows/bin/'): # ver18?? or gene...
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def get_languages(project_data): """ Get the available languages for the crowdin project. Parameters ---------- project_data : dict Crowdin project data. Returns ------- dict Available languages on crowdin. """ result = {} for language in project_data["targe...
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def get_list_of_revisions(): """List of known Raspberry Pi Revisions. Provides a list of known Raspberry Pi CPU IDs and the corresponding Raspberry Pi model name ("revision"). Args: Returns: dict: dictionary of Raspberry Pi Revisions """ known_revisions = {'0002': 'Model B R1', ...
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def name(who): """Return the name of a player.""" return "Player {0}".format(who)
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import random def process_field(form, field): """ sample """ try: field_name = field.get("name") field_type = field.get("type") field_value = field.get("value") types = ["hidden", "submit", "button", "file", "reset"] if field_name is not None: ...
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def tv(five_year_fcf, wacc, g= 0.03): """Returns terminal value using Gordon Growth formula.""" last_fcf = five_year_fcf[-1] return last_fcf*(1+g) / (wacc - g)
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import torch from typing import Optional from typing import Union from typing import List from typing import Dict from typing import Any from typing import Iterable def _get_param_id_to_param( model: torch.nn.Module, optim_input: Optional[Union[ List[Dict[str, Any]], Iterable[torch.nn.Parameter], ...
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import re def match_scene_name(scene_name): """ Args: scene_name (str): FloorPlanXX-<random_seed(int) | default> Returns a tuple of scene name and seed (or 'default') if we can match the format.""" m = re.match("^FloorPlan[0-9]+-([0-9]+|default)$", scene_name) if m is not None: ...
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def design_thick_spherical_transform_lens(n, w, f): """Choose radius of curvature and thickness for a Fourier transform with given focal length and working distance. Args: n: refractive index w: working distance f: transform focal length Returns: roc: radius of curvature ...
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def arb_callable(n): """Arb callable for testing.""" return n * 2
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def _get_header_info(line): """ Get number of sequences and length of sequence """ header_parts = line.split() num_seqs, length = list(map(int, header_parts[:2])) is_interleaved = len(header_parts) > 2 return num_seqs, length, is_interleaved
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from typing import List def lcs_tabulated(first: str, second: str) -> int: """ Time Complexity: O(n*n) """ len_f: int = len(first) len_s: int = len(second) matrix: List[List[int]] = [[0] * (len_s + 1) for _ in range(len_f + 1)] for f in range(1, len_f + 1): for s in range(1, len_...
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import json def loadJsonArgs(fn): """ Load the .json file containing input values Args: fn: file name Returns: args: argument dictionary """ with open(fn) as data_file: data = json.load(data_file) args = {} args['patient_id'] = data['Patient ID'] args['st...
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import hashlib def getMd5(input_str): """ :param str input_str: Unicode-objects must be encoded before hashing :rtype: str """ hash_obj = hashlib.md5(input_str.encode("utf-8")) return hash_obj.hexdigest()
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from pathlib import Path def get_cwd() -> Path: """Determine the current working directory. :return: The appropriate current working directory path :rtype: ~pathlib.Path """ return Path.cwd()
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def bswap(data): """ Byteswap data """ return data.byteswap()
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def qasplit(chars, sep=",", quote="'"): """ Quote aware split """ if sep == quote: raise Exception("sep and quote cannot be the same character") can_split = True splitpoints = [-1] last_c = None for index, c in enumerate(chars): if c == quote and last_c != "\\": ...
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import json def _GetKeysAsDict(keys_input): """Converts |keys_input| into a dictionary. Args: keys_input: A dictionary or a string pointing to a JSON file. The contents of either should be Skia Gold config data. Returns: A dictionary containing the Skia Gold config data. """ if isinstance(...
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def zfill(s, width): """ """ if len(s) < width: return ("0" * (width - len(s))) + s else: return s
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def query(conn, string: str): """Perform a query on titanic database and return result.""" curs = conn.cursor() curs.execute(f'{string}') result = curs.fetchall() return result
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import torch def safe_log(x, eps=1e-7): """Avoid taking the log of a non-positive number.""" safe_x = torch.where(x <= eps, eps, x.double()) return torch.log(safe_x)
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def puncify(s): """Replaces unicode characters with the appropriate ASCII punctuation""" return s.replace(u'\xa0', u' ').replace(u'\u201c', '"').replace(u'\u201d', '"').replace(u'\u2019', "'").replace(u"&amp;", '&').replace(u'\u2026', '...')
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import re def extract_episode(text, seg_search, eg_search): """ Extract episode number from metadata. :param str text: Metadata containing episode number. :param str seg_search: Regex for a `Super Easy German` episode. :param str eg_search: Regex for an `Easy German` episode. :return: Episode...
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def bslice(high, low=None): """ Represents: the bits range [high : low] of some value. If low is not given, represents just [high] (only 1 bit), which is the same as [high : high]. """ if low is None: low = high return slice(low, high + 1)
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def cvt_pos(pos: list, cvt_mat_t: list): """ param: pos: original coord, [x, y] return: x_map, y_map: new coord after transform """ u = pos[0] v = pos[1] x = (cvt_mat_t[0][0] * u + cvt_mat_t[0][1] * v + cvt_mat_t[0][2]) / ( cvt_mat_t[2][0] * u + cvt_mat_t[2][1...
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def serialize_file_list(files: list, active_item_index: int = -1): """Returns a serialized file list, which JRiver requires in some API calls. These are a not documented further, but form a string of comma seperated values. These are, in order: [0] The value '2', stating a serialization version. Only 2 ...
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def _edge_is_between_selections(edge, selection_a, selection_b): """ Returns ``True`` is the edge has one end in each selection. Parameters ---------- edge: tuple[int, int] selection_a: collections.abc.Container[collections.abc.Hashable] selection_b: collections.abc.Container[collections.ab...
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from typing import Dict from typing import Set from typing import List def construct_global_order(layers: Dict[str, Dict[str, str]], order: str) -> Dict[int, Set[int]]: """ Return a dictionary for each face which other faces are directly below it. :param layers: :param order: :return: """ ...
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def fmt_section(prefix='', total='', new='', suffix=' · '): """Return formatted section""" section = '' if total or new: section = '{}{}{}{}'.format(prefix, new, total, suffix) return section
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import math def _cuda_line_circle_intersection(r0, step, radius): """Calculate the distance from r0 to a circle centered at origin along step. r0 must be inside the circle. Parameters ---------- r0 : numba.cuda.cudadrv.devicearray.DeviceNDArray step : numba.cuda.cudadrv.devicearray.DeviceNDAr...
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def func_lef_right_capacities(k_idx): """Computes the expected value of the random variable capacitires of the left and right problems. Computes E(C_lef) and E(C_right) according to expressions (43a) and (43b) in Theorem 19. Args: k_idx: Int. Knapsack capacity. Returns: cap_left_close...
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