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Retieves a prelocked connection from the Pool @author: Nick Verbeck @since: 9/7/2008
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Schema for particular properties of the object.
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Make a batch request. :param requests: A list of dictionaries with keys 'method', 'relative_url' and optionally 'body'. Yields a list of responses and/or exceptions.
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Creates and return a Series from a Series :param series: raccoon Series :param offset: offset value must be provided as there is no equivalent for a DataFrame :return: Series
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Perform HTTP POST request.
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Runs generator on both pages and articles.
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Abort an existing job. When a job is aborted, no more records are processed. Changes to data may already have been committed and aren't rolled back. :param job_id: job_id as returned by 'create_operation_job(...)' :return: abort response as xml
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Gaussian filter with filling
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Loads a MOC from a FITS file. The specified FITS file must store the MOC (i.e. the list of HEALPix cells it contains) in a binary HDU table. Parameters ---------- filename : str The path to the FITS file. Returns ------- result : `~mocpy.moc.MOC` or...
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Build a cryptography TripleDES Cipher object. :param bytes key: Encryption key :param bytesiv iv: Initialization vector :returns: TripleDES Cipher instance :rtype: cryptography.hazmat.primitives.ciphers.Cipher
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Return a DiGraph of a specific event structure, built recursively
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Page contains OME-XML in ImageDescription tag.
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Collects the parameter either from initialization parameters or from EOPatch
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Report message.
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Make prediction recursively. Use both the samples inside the current node and the statistics inherited from parent.
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Generate an icinga2 client certificate and key. Returns:: icinga2 pki new-cert --cn domain.tld --key /etc/icinga2/pki/domain.tld.key --cert /etc/icinga2/pki/domain.tld.crt CLI Example: .. code-block:: bash salt '*' icinga2.generate_cert domain.tld
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Find some entities from the API endpoint. If no api_key is provided, the global api key will be used. If fetch_all is True, page through all the data and find every record that exists. If add_headers is provided (as a dict) use it to add headers to the HTTP request, eg. ...
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Creates a template from the given string based on the specified provider or the provider with highest precedence. Args: s: The string to convert to a template. provider_name: The name of the provider to use to create the template.
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Return name of book with given index.
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Return data path to `filename`, checking locally first then in the config file.
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In use within templates for dynamic translations.
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Checks if latitude and longitude correct
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Return a hash of all of the given files at the given root. Adapted from stacker.hooks.aws_lambda; used according to its license: https://github.com/cloudtools/stacker/blob/1.4.0/LICENSE Args: files (list[str]): file names to include in the hash calculation, relative to ``root``. ...
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Construct a composite distance function for a set of features, based on the types of those features. NOTE: This function is very similar to `:func:_nearest_neighbors.choose_auto_distance`. The function is separate because the auto-distance logic different than for each nearest neighbors-based toolk...
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Return an instantiated stat object stats should not override this method. Parameters ---------- geom : geom `geom` Returns ------- out : stat A stat object Raises ------ :class:`PlotnineError` if unable to create...
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MM INFORMATION Section 9.2.15a
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research-organism list including inline tags, such as italic
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Try to get region from instance identity document and cache it .. versionadded:: 2015.5.6
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runs the kernel repeatedly, returns averaged returned value The C function tuning is a little bit more flexible than direct CUDA or OpenCL kernel tuning. The C function needs to measure time, or some other quality metric you wish to tune on, on its own and should therefore return a sing...
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Widget toolbar toggle event handler
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r"""Covariance matrix for Dirichlet distribution. Parameters ---------- alpha : (M, ) ndarray Parameters of Dirichlet distribution Returns ------- cov : (M, M) ndarray Covariance matrix
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Updates store for the `image_file`. Makes sure the `image_file` has a size set.
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Parses an OLECF item. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. olecf_item (pyolecf.item): OLECF item. Returns: bool: True if an event was produced.
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Schedule all flows without using the Foreman. Since we know all the client ids to run on we might as well just schedule all the flows and wait for the results. Args: token: A datastore access token.
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Split a query into different expressions. Example: name:bla, foo:<=1
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Updates Route53 Records following GW domain creation
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Size the canvas item to the proper height.
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Return standard deviations as defined in eq. 4 and 5, page 744, based on table 8, page 744. Eq. 5 yields std dev in natural log, so convert to log10
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"Tap" a Deferred callback chain with a function whose return value is ignored.
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Write Link Lines to File Method
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Return the next multiple of this time value, greater than or equal to ``other``. If ``other`` is zero, return this time value. :rtype: :class:`~aeneas.exacttiming.TimeValue`
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Return generator of fields matching `searches`. Parameters ---------- lines : iterable Provides line number (1-based) and line (str) delim : str Delimiter to split line by to produce fields searches : iterable Returns search (str) to match against line fields. match_line...
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Return the token network address for the given token or None if there is no correspoding address.
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Given a block of text, breaks into a list of lines wrapped to length.
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Get the ACL of an object. Will filter by user if one is provided. Args: path: The path to the object objectType: The type of object (FILE, DIRECTORY, REGISTRY) user: A user name to filter by Returns (dict): A dictionary containing the ACL CLI Example: .. code-block:: bash ...
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Uses riak http search query endpoint for advanced SOLR queries. Args: field (str): facet field count_deleted (bool): ignore deleted or not Returns: (dict): pairs of field values and number of counts
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Add a tarball, possibly creating the directory if needed.
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Retrieve the variant region BED file from a population of items. If tumor/normal, return the tumor BED file. If a population, return the BED file covering the most bases.
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Perform validation only if data has been submitted
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r""" Apply data to the network based on a rectangular array filled with values. Each array location corresponds to a pore in the network. Parameters ---------- array : array_like The rectangular array containing the values to be added to the network. Thi...
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Calculate fields that can be accessed by authenticated user.
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Return the stop frequency of a template
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Return a set of artifact names needed to fulfill dependencies. Search the path dependency tree for all artifacts that can fulfill dependencies of artifact_name_list. If multiple artifacts provide a dependency, they are all included. Args: os_name: operating system string artifact_name_lis...
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Grab package verion
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Adds a Max Pooling layer. It is assumed by the wrapper that the pooling is only done per image and not in depth or batch. Args: inputs: a tensor of size [batch_size, height, width, depth]. kernel_size: a list of length 2: [kernel_height, kernel_width] of the pooling kernel over which the op is com...
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Core function to display a Node object
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Decorator for marking that a method is a downgrade to a version to the previous version. Parameters ---------- src : int The version this downgrades from. Returns ------- decorator : callable[(callable) -> callable] The decorator to apply.
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Iterate through the lines and remove any that are either empty or contain only one whitespace value Parameters ---------- lines : array-like The array of lines that we are to filter. Returns ------- filtered_lines : array-like The same ar...
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Stop the atlas node threads
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Query every row and only certain columns from a table.
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Transfer a project to the given namespace ID Args: to_namespace (str): ID or path of the namespace to transfer the project to **kwargs: Extra options to send to the server (e.g. sudo) Raises: GitlabAuthenticationError: If authentication is not correct ...
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Handle the DefineSceneAndFrameLabelData tag.
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Send a generic IRC message to the server. A message is created using the various parts of the message, then gets assembled and sent to the server. Args: verb (str): Verb, such as PRIVMSG. params (list of str): Message parameters, defaults to no params. sourc...
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Retrieve indices of a trimmed matrix with respect to the original matrix. Fairly fast but is only correct if diagonal values are different, which is always the case in practice.
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Calculate the geometric std. dev. of the events in an FCSData object. Parameters ---------- data : FCSData or numpy array NxD flow cytometry data where N is the number of events and D is the number of parameters (aka channels). channels : int or str or list of int or list of str, option...
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Assigns initial fitnesses.
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Returns a list of EATOM values for the pseudopotentials used. Args: filename (Str, optional): OUTCAR filename. Defaults to 'OUTCAR'. Returns: (List(Float)): A list of EATOM values, in the order they appear in the OUTCAR.
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Pad doc from the left and right before adding, depending on what's in self.lpad and self.rpad If any of them is '', then don't pad there.
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Enables the root logger and configures extra loggers.
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Runs a final evaluation on an eval graph using the test data set. Args: train_session: Session for the train graph with the tensors below. module_spec: The hub.ModuleSpec for the image module being used. class_count: Number of classes image_lists: OrderedDict of training images for each label. jp...
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Returns specified index, 0 indexed, from string based on regex pattern given Parameters ---------- pattern : string (regular expression string) index : int, 0 indexed Returns ------- extracted : string
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Delete a role.
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Creates a random binary tree.
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Allows to add one or more sort on specific fields. Each sort can be reversed as well. The sort is defined on a per field level, with special field name for _score to sort by score.
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Calls this instance's request_client's post method with the specified component endpoint Args: - endpoint_name (str) - The endpoint to call like "property/value". - identifier_input - One or more identifiers to request data for. An identifier can be in one of the...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rsem_stats_table'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
Take the parsed stats from the rsem report and add them to the basic stats table at the top of the report
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Disable the full quicklook mode
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Gets an item based on the path.
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Given ML Workbench prediction results, get probs of each label for each instance. The prediction results are like: [ {'predicted': 'daisy', 'probability': 0.8, 'predicted_2': 'rose', 'probability_2': 0.1}, {'predicted': 'sunflower', 'probability': 0.9, 'predicted_2': 'daisy', 'probability_2': 0.01}, .....
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Connect to the MySQL database.
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Parse the disease-drug target associations file. :param str path: Path to the disease-drug target associations file. :param list excluded_disease_ids: Identifiers of the disease for which drug targets are being predicted. :return: Dictionary of drug target-disease mappings.
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Completions for the 'extra' command.
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First pairing step.
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return dictionary of keys and values corresponding to this model's data - if include_keys is null the function will return all keys :param exclude_keys: (optional) is a list of columns from model that should not be returned by this function :param include_keys: (optional) is a list of c...
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Fail if first is not less than second. >>> assert_less('bar', 'foo') >>> assert_less(5, 5) Traceback (most recent call last): ... AssertionError: 5 is not less than 5 The following msg_fmt arguments are supported: * msg - the default error message * first - the first argument *...
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Get BEL API arango db handle
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An implementation of shifting a column relative to another one that is in units of time rather than rows.
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Retrieves the requested method of the activator, or returns None :param method_name: A method name :return: A method, or None
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provide explicit type promotion and coercion Parameters ---------- values : the ndarray that we want to maybe upcast fill_value : what we want to fill with dtype : if None, then use the dtype of the values, else coerce to this type copy : if True always make a copy even if no upcast is required
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Return whether or not user can join a group on `project`.
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Yields the absolute paths of files found within the given start directory. Can optionally filter paths using a regex pattern.
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Get a value from the snapshot data. If the data is nested, for example: .. code-block:: python >>> snapshot.to_dict() { 'top1': { 'middle2': { 'bottom3': 20, 'bottom4': 22, }, ...
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Update the offsets
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Get a remote object or a list of remote objects from the object store. This method blocks until the object corresponding to the object ID is available in the local object store. If this object is not in the local object store, it will be shipped from an object store that has it (once the object has bee...
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Check if a node 'isinstance' any node in class_or_seq :param node: A given node :param class_or_seq: Union[nodes.NodeNG, Sequence[nodes.NodeNG]] :rtype: bool :raises AstroidTypeError: if the given ``classes_or_seq`` are not types
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Send an Exit chunk over the specified socket, containing the specified return code.
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Return k-points mesh and k-point map to the irreducible k-points. The symmetry is serched from the input cell. Parameters ---------- mesh : array_like Uniform sampling mesh numbers. dtype='intc', shape=(3,) cell : spglib cell tuple Crystal structure. is_shift : array_li...
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Add a battery level reward
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Parses a CWR file name from a FileTag object. The result will be a string following the format CWyynnnnsss_rrr.Vxx, where the numeric sequence will have the length set on the encoder's constructor. :param tag: FileTag to parse :return: a string file name parsed from the FileTag
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Attach private interfaces to a server CLI Example: .. code-block:: bash salt minionname cloud.virtual_interface_create my-nova names=['salt-master'] net_name='salt'