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Obtain a JSON record reader for DIAMOND records. @param filename: The C{str} file name holding the JSON. @param scoreClass: A class to hold and compare scores (see scores.py).
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A helper to spawn an error and halt processing. An exception will be logged, busy status removed and a message displayed. .. versionadded:: 3.3 :param sender: The sender. :type sender: object :param message: an ErrorMessage to display :type message: ErrorMessage, Message :param exce...
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Return the index stored in a h5features group. :param h5py.Group group: The group to read the index from. :param str version: The h5features version of the `group`. :return: a 1D numpy array of features indices.
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Parse the output from Picard's MarkDuplicates and return as pandas Series. Parameters ---------- filename : str of filename or file handle Filename of the Picard output you want to parse. Returns ------- metrics : pandas.Series Duplicate metrics. hist : pandas.Series ...
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Transfer files and directories from remote host to the localhost of the Minion. remote_path Path to retrieve from remote host. Since this is evaluated by scp on the remote host, shell wildcards and environment variables may be used. recursive: ``False`` Transfer files and directori...
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Approximate BLEU score computation between labels and predictions. An approximate BLEU scoring method since we do not glue word pieces or decode the ids and tokenize the output. By default, we use ngram order of 4 and use brevity penalty. Also, this does not have beam search. Args: logits: Tensor of size ...
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Fetches a list of all lbaas_members for a project.
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List the objects for a bucket. :param str instance: A Yamcs instance name. :param str bucket_name: The name of the bucket. :param str prefix: If specified, only objects that start with this prefix are listed. :param str delimiter: If specified, return only obj...
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Get the enlarged bounding box of a source. :param src: a source object :returns: a bounding box (min_lon, min_lat, max_lon, max_lat)
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Prints the current GloTK module and a `message`. Taken from biolite
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Sends request to facebook graph Returns the facebook-json response converted to python object
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Move to limit switch and define it as position. :param position: The new position of the limit switch.
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Write trajectory data to the Crazyflie
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Create and cache the full path for this document. Of the form: ``projects/{project_id}/databases/{database_id}/... documents/{document_path}`` Returns: str: The full document path. Raises: ValueError: If the current document reference has...
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Pulls all checks from pingdom Optional Parameters: * limit -- Limits the number of returned probes to the specified quantity. Type: Integer (max 25000) Default: 25000 * offset -- Offset for listing (requires limit.) ...
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Return the sizes of all sequences in the index, or the size of chrom if specified as an optional argument
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Writes `results` to `fh` minus those results associated with the 'no' label. :param results: results to be manipulated :type results: file-like object :param fh: output destination :type fh: file-like object
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Iterate over all output files.
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Adds one model for a given core element. The method will add a model for a given core object and checks if there is a corresponding model object in the future expected model list. The method does not check if an object with corresponding model has already been inserted. :param model_li...
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Add in numeric unary methods.
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Clear out any old screenshots
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Return XML content of given tag in parent element.
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Execute queries against MySQL, merge and return as a dict
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Return the formatted name used for the supplied definition
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should be a matter of just unsetting the above keys
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Return git-hash compatible SHA-1 hexdigits for a blob of data.
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Called by HTMLParser.feed when text is found.
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Get a random integer value. :param maximum: Maximum value of age. :param minimum: Minimum value of age. :return: Random integer. :Example: 23.
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Read the value of the cell holding the 'wait' value, Returns the int value of whatever it has, or None if the cell doesn't exist.
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Initialize the bot with a dictionary of config items
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Fail if first and second refer to the same object. >>> list1 = [5, "foo"] >>> list2 = [5, "foo"] >>> assert_is_not(list1, list2) >>> assert_is_not(list1, list1) Traceback (most recent call last): ... AssertionError: both arguments refer to [5, 'foo'] The following msg_fmt arguments...
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Sets an application attribute :param app: application id :param key: key of the attribute to set :param value: value to set :returns: True if the operation succeeded, False otherwise :raises: HTTPResponseError in case an HTTP error status was returned
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Use an application token for authentication. :param str token: Application token retrieved from GitHub's /authorizations endpoint
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Internal function to execute toolkit on the turicreate server. Parameters ---------- toolkit_name : string The name of the toolkit. options : dict A map containing the required input for the toolkit function, for example: {'graph': g, 'reset_prob': 0.15}. verbose : bool ...
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Returns a input_receiver_fn that can be used during serving. This expects examples to come through as float tensors, and simply wraps them as TensorServingInputReceivers. Arguably, this should live in tf.estimator.export. Testing here first. Args: shape: list representing target size of a single example....
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Get points where derivative is zero. Useful for computing the extrema of the polynomial over an interval if the polynomial has real roots. In this case, the maximum is attained for one of the interval endpoints or a point from the result of this function that is contained in the interva...
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Strip prefix from path. Args: ipath: input path prefix: the prefix to remove, if it is found in :ipath: Examples: >>> strip_path_prefix("/foo/bar", "/bar") '/foo/bar' >>> strip_path_prefix("/foo/bar", "/") 'foo/bar' >>> strip_path_prefix("/foo/bar", "/fo...
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Parses an UCI string. :raises: :exc:`ValueError` if the UCI string is invalid.
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Convert unicode objects to str
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Return HTTP 400 Bad Request.
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Complete the specified event.
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Make sure format and compression is known.
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Get the full alias given a search query. Args: query: The query this function performs searching on. Returns: The full alias (with the placeholders, if any).
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Creates a handler from its config. Params: config: handler config Returns: handler instance
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Print the variable out. Limit the string length to, by default, 300 characters.
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Fail unless ``dt`` has a non-null ``tzinfo`` attribute. Parameters ---------- dt : datetime msg : str If not provided, the :mod:`marbles.mixins` or :mod:`unittest` standard message will be used. Raises ------ TypeError If ``dt...
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Reduce a previously extracted core and compute an over-approximation of an MUS. This is done using the simple deletion-based MUS extraction algorithm. The idea is to try to deactivate soft clauses of the unsatisfiable core one by one while checking if the rem...
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Parse a string, imports the module and returns the class. >>> parse_class('hashlib.md5') <built-in function openssl_md5>
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Get abbreviation of a language.
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Unpacks the argparse Namespace object and applies its contents as normal arguments to the function func
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Execute a query against the cloud backend
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A context manager that provides access to a file. :param f: the file to be opened :type f: a file-like object or path to file :param mode: how to open the file :type mode: string
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Formats the AutoPatchingSettings object removing arguments that are empty
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Add the "Split", "Join" classification, if the element qualifies for. :param element: an element from BPMN diagram, :param classification_labels: list of labels attached to the element, :param nodes_classification: dictionary of classification labels. Key - node id. Value - a list of labels.
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Demo problem 0 for horsetail matching, takes two input vectors of any size and returns a single output
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Converts value from source_unit to target_unit. Returns a tuple containing the converted value and target_unit. Having fmt set to True causes the value to be formatted to 1 decimal digit if it's a decimal or be formatted as integer if it's an integer. E.g: >>> convert(2, 'hr', 'min') (120.0, ...
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Creates a Lambda Service Generic ServiceException Response Parameters ---------- args list List of arguments Flask passes to the method Returns ------- Flask.Response A response object representing the GenericServiceException Error
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Wrap a method such that when it is called, the args and kwargs are saved on the method. >>> class MyClass: ... @save_method_args ... def method(self, a, b): ... print(a, b) >>> my_ob = MyClass() >>> my_ob.method(1, 2) 1 2 >>> my_ob._saved_method.args (1, 2) >>> my_ob._saved_method.kwargs {}...
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Implementation of the core metadata-carrying Event proto callback. Args: event: An Event proto that contains core metadata about the debugged Session::Run() in its log_message.message field, as a JSON string. See the doc string of debug_data.DebugDumpDir.core_metadata for details.
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Return the second part of the event_type e.g. >>> Event.event_type = 'experiment.deleted' >>> Event.get_event_action() == 'deleted'
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Tests if an object is a collection.
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Updates the documentation for the specified type using the module predocs.
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Iterate through a queryset in batches of length `batch_len` >>> [batch for batch in generate_tuple_batches(range(7), 3)] [(0, 1, 2), (3, 4, 5), (6,)]
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get zscore of price
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Find prog in the path.
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Returns the stored Analyst or the user who submitted the result
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Get the conversion equations for each axis. limits: dict of min and max values for the axes in the order blr.
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Setup a ZAP authenticator. :param zap_authenticator: A ZAP authenticator instance to use. The context takes ownership of the specified instance. It will close it automatically when it stops. If `None` is specified, any previously owner instance is disowned and returned. It b...
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Get a unique nonce for the bitstamp API. This integer must always be increasing, so use the current unix time. Every time this variable is requested, it automatically increments to allow for more than one API request per second. This isn't a thread-safe function however, so you should ...
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Send a request message, with automatic message ID assignment. Parameters ---------- msg : katcp.Message request message use_mid : bool or None, default=None Returns ------- mid : string or None The message id, or None if no msg id is used If...
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Return args as a list. If already a list - return as is. >>> listify([1, 2, 3]) [1, 2, 3] If a set - return as a list. >>> listify(set([1, 2, 3])) [1, 2, 3] If a tuple - return as a list. >>> listify(tuple([1, 2, 3])) [1, 2, 3] If a generator (also range / xrange) - return...
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A function generator that can be used for sorting. All keywords are passed to `normalize()` and generate keywords that can be passed to `sorted()`:: >>> key = sort_func() >>> print(sorted(["fur", "far"], key=key)) [u'far', u'fur'] Please note, that `sort_func` returns a function.
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r""" Calculate surface area for a cylindrical throat Parameters ---------- target : OpenPNM Object The object which this model is associated with. This controls the length of the calculated array, and also provides access to other necessary properties. throat_diameter : str...
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Delete a card from its id. :param customer: The customer id or object :type customer: string|Customer :param card: The card id or object :type card: string|Card
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Return issue by ID Args: issue_id (str): Unique Issue identifier issue_type_id (str): Type of issue to get Returns: :obj:`Issue`: Returns Issue object if found, else None
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Check that an option or argument given to GPG is in the set of allowed options, the latter being a strict subset of the set of all options known to GPG. :param str input: An input meant to be parsed as an option or flag to the GnuPG process. Should be formatted the same as an option ...
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Prints the analysis status header. Args: processing_status (ProcessingStatus): processing status.
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finds the destination based on source if source is an absolute path, and there's no pattern, it copies the file to base dst_dir
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Defines the so-called global column headings for Arbin .res-files
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Deprecated method to convert an MultiDimensionalMapping of Elements to a Table.
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Copy fields inside an attribute table. :param layer: The vector layer. :type layer: QgsVectorLayer :param fields_to_copy: Dictionary of fields to copy. :type fields_to_copy: dict
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Select rows where the given field evaluates `False`.
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Limit row passing a value or detect limits making the best effort.
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Visitor for `FunctionBody` AST node.
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Abort the batches that have been sitting in RecordAccumulator for more than the configured request_timeout due to metadata being unavailable. Arguments: request_timeout_ms (int): milliseconds to timeout cluster (ClusterMetadata): current metadata for kafka cluster ...
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Find and return if a datastream exists, by name.
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Restore a smudged file from .bytes_backup
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Helper parse action to convert tokens to lower case.
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Convert a int value to bytes. :param int_val: an arbitrary length Python integer to be split up. Network byte order is assumed. Raises an IndexError if width of integer (in bits) exceeds word_size * num_words. :param num_words: number of words expected in return value tuple. ...
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Launches a new server instance.
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This resource returns static details about available events. :param event_id: Only list this event. :param lang: Show localized texts in the specified language. The response is a dictionary where the key is the event id, and the value is a dictionary containing the following properties: name (str...
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Compile a set of regexps for files to be exlcuded from scans.
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Read from self.manual Read from the boolean array `self.manual`, index all occurences of `False` and find the corresponding indices in the root hierarchy parent, return those and store them in `self._man_root_ids` as well. Notes ----- This method also retrieves ...
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promote user to owner in stream
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Returns a string representation of the current SDK version.
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based on our axes, compute the expected nrows
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Displays postal address with localized fields
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Creating a matching for WSGI application to serve static files for passed app. Static files will be collected from directory named 'static' under passed application:: ./blog/static/ This example is with an application named `blog`. URLs for static files in static directory will begin with...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_summarize_coefficients'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': []...
Return a tuple of sections and section titles. Sections are pretty print of model coefficients Parameters ---------- top_coefs : SFrame of top k coefficients bottom_coefs : SFrame of bottom k coefficients Returns ------- (sections, section_titles) : tuple sections : list ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'GetNextNode'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
GetNextNode returns the outnode that matches an element from the modes list, starting at the given innode. This method isnt actually used, its just a helper method for debugging purposes.