Upload layout notes
This upload view is built from dataset/bio_AlphaFold3_dataset for ModelScope upload.
The full local source contains public_databases/mmcif_files/ with about 195k files, which exceeds the ModelScope upload pre-check file-count limit. The upload view therefore does not include that expanded directory. It includes the upstream archive instead:
data/public_databases/pdb_2022_09_28_mmcif_files.tar
Before running AlphaFold3 template search that requires public_databases/mmcif_files, extract the archive inside the dataset package:
cd data/public_databases
tar -xf pdb_2022_09_28_mmcif_files.tar
Other database directories are kept as linked source directories in the upload view.