# Upload layout notes

This upload view is built from `dataset/bio_AlphaFold3_dataset` for ModelScope upload.

The full local source contains `public_databases/mmcif_files/` with about 195k files, which exceeds the ModelScope upload pre-check file-count limit. The upload view therefore does not include that expanded directory. It includes the upstream archive instead:

```text
data/public_databases/pdb_2022_09_28_mmcif_files.tar
```

Before running AlphaFold3 template search that requires `public_databases/mmcif_files`, extract the archive inside the dataset package:

```bash
cd data/public_databases
tar -xf pdb_2022_09_28_mmcif_files.tar
```

Other database directories are kept as linked source directories in the upload view.