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Many important cellular membrane fission reactions are driven by ESCRT pathways , which culminate in disassembly of ESCRT-III polymers by the AAA ATPase Vps4 . We report a 4 . 3 Å resolution cryo-EM structure of the active Vps4 hexamer with its cofactor Vta1 , ADP·BeFx , and an ESCRT-III substrate peptide . Four Vps4 s... | Membranes surround multiple compartments within cells as well as the cell itself . In living cells , these membranes are remodeled continuously . This allows cells to divide , move molecules between different compartments and perform other essential activities . One important remodeling event is known as fission , whic... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2017 | Structural basis of protein translocation by the Vps4-Vta1 AAA ATPase |
The Cdc45/Mcm2-7/GINS ( CMG ) helicase separates DNA strands during replication in eukaryotes . How the CMG is assembled and engages DNA substrates remains unclear . Using electron microscopy , we have determined the structure of the CMG in the presence of ATPγS and a DNA duplex bearing a 3′ single-stranded tail . The ... | Before a cell divides , it must duplicate its DNA so that each new cell inherits its own copy of the genome . To do this , the DNA double helix must be unwound so that the two individual strands of DNA can serve as templates for making new DNA molecules . Unwinding begins when two helicase complexes , termed the Mcm2-7... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2014 | DNA binding polarity, dimerization, and ATPase ring remodeling in the CMG helicase of the eukaryotic replisome |
Here , we document a collection of ∼7434 MiMIC ( Minos Mediated Integration Cassette ) insertions of which 2854 are inserted in coding introns . They allowed us to create a library of 400 GFP-tagged genes . We show that 72% of internally tagged proteins are functional , and that more than 90% can be imaged in unfixed t... | In the last few decades , technical advances in altering the genes of organisms have led to many discoveries about how genes work . For example , it is now possible to add a specific DNA sequence to a gene so that the protein it makes will carry a ‘tag’ that enables us to track it in cells . One such tag is called gree... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"tools",
"and",
"resources",
"neuroscience"
] | 2015 | A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila |
The aminopeptidase DPP9 removes dipeptides from N-termini of substrates having a proline or alanine in second position . Although linked to several pathways including cell survival and metabolism , the molecular mechanisms underlying these outcomes are poorly understood . We identified a novel interaction of DPP9 with ... | Proteins are made up of building blocks called amino acids bonded together to form chain-like molecules . Around twenty different amino acids are used to make proteins , and enzymes called proteases can recognize specific pairs of amino acids in proteins and cut the bonds between them . Dipeptidylpeptidase 9 ( or DPP9 ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2016 | DPP9 is a novel component of the N-end rule pathway targeting the tyrosine kinase Syk |
Responses of midbrain dopamine ( DA ) neurons reflecting expected reward from sensory cues are critical for reward-based associative learning . However , critical pathways by which reward-related visual information is relayed to DA neurons remain unclear . To address this question , we investigated Pavlovian conditioni... | To survive and thrive , animals must learn to approach cues in their environment that are likely to lead to a desirable outcome and avoid those that might lead them to harm . A group of brain regions known as the midbrain dopamine system helps many animals to achieve this . Dopamine is the brain’s reward signal . Cues ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | Emergence of visually-evoked reward expectation signals in dopamine neurons via the superior colliculus in V1 lesioned monkeys |
Anti-malarial pre-erythrocytic vaccines ( PEV ) target transmission by inhibiting human infection but are currently partially protective . It has been posited , but never demonstrated , that co-administering transmission-blocking vaccines ( TBV ) would enhance malaria control . We hypothesized a mechanism that TBV coul... | In 2016 , malaria caused an estimated 216 million illnesses and 445 , 000 confirmed deaths globally . The disease is caused by a parasite , and mosquitos infected with the parasite transmit them to humans when they bite . In humans , the parasites enter the body and head to the liver before spending part of their life ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health",
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | Synergy in anti-malarial pre-erythrocytic and transmission-blocking antibodies is achieved by reducing parasite density |
ATP-dependent chromatin remodelling proteins represent a diverse family of proteins that share ATPase domains that are adapted to regulate protein–DNA interactions . Here , we present structures of the Saccharomyces cerevisiae Chd1 protein engaged with nucleosomes in the presence of the transition state mimic ADP-beryl... | The DNA inside cells contains all the information needed to build an organism . Human DNA measures about 2 metres . To condense it , DNA is wrapped around eight histone proteins to form disc-like structures , called nucleosomes . Nucleosomes are further compressed into chromatin fibres that make up our chromosomes . Th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2018 | Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome |
Malaria transmission is spatially heterogeneous . This reduces the efficacy of control strategies , but focusing control strategies on clusters or ‘hotspots’ of transmission may be highly effective . Among 1500 homesteads in coastal Kenya we calculated ( a ) the fraction of febrile children with positive malaria smears... | Malaria remains a formidable threat to public health in tropical regions . The parasite that causes the disease is transmitted to humans by bites from infected mosquitoes , and the complicated lifecycle of the parasite makes developing vaccines difficult . However , preventive strategies are effective at reducing the s... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health",
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | A micro-epidemiological analysis of febrile malaria in Coastal Kenya showing hotspots within hotspots |
More than 90% of lung cancers are caused by cigarette smoke and air pollution , with polycyclic aromatic hydrocarbons ( PAHs ) as key carcinogens . In Xuanwei City of Yunnan Province , the lung cancer incidence is among the highest in China , attributed to smoky coal combustion-generated PAH pollution . Here , we scree... | Lung cancer causes the most cancer deaths worldwide . For decades , people have known that lung cancer is associated with environmental factors , and both cigarette smoke and air pollution are known to cause cancers in humans . Smoke and air pollution both contain chemicals called polycyclic aromatic hydrocarbons ( or ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cancer",
"biology"
] | 2015 | The chemokine CXCL13 in lung cancers associated with environmental polycyclic aromatic hydrocarbons pollution |
Previous studies have demonstrated the importance of the primary sensory cortex for the detection , discrimination , and awareness of visual stimuli , but it is unknown how neuronal populations in this area process detected and undetected stimuli differently . Critical differences may reside in the mean strength of res... | Seeing is not the same as perceiving , where an object is recognized and information about it is interpreted by the brain . Things might be in your field of view , but not actively perceived; for example , when daydreaming with your eyes open . Many researchers have investigated how the brain responds differently to a ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2015 | Mouse V1 population correlates of visual detection rely on heterogeneity within neuronal response patterns |
A key step in the de novo formation of the embryonic vasculature is the migration of endothelial precursors , the angioblasts , to the position of the future vessels . To form the first axial vessels , angioblasts migrate towards the midline and coalesce underneath the notochord . Vascular endothelial growth factor has... | The circulatory system enables blood to move around the body and deliver substances including nutrients and oxygen to the cells that need them . In the embryos of animals with a backbone , blood flows from the heart through the aorta into branching smaller vessels to the cells . The blood then gets collected by progres... | [
"Abstract",
"Main",
"text",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"short",
"report"
] | 2015 | The hormonal peptide Elabela guides angioblasts to the midline during vasculogenesis |
Actin , spectrin , and associated molecules form a periodic sub-membrane lattice structure in axons . How this membrane skeleton is developed and why it preferentially forms in axons are unknown . Here , we studied the developmental mechanism of this lattice structure . We found that this structure emerged early during... | The brain contains hundred types of neurons , but they are all variations on the same basic structure . Each neuron consists of a cell body that is covered in short protrusions called dendrites and a long thin structure called the axon . The dendrites receive incoming signals from neighboring neurons and they transmit ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2014 | Developmental mechanism of the periodic membrane skeleton in axons |
Circadian clocks serve as internal pacemakers that influence many basic homeostatic processes; consequently , the expression and function of their components are tightly regulated by intricate networks of feedback loops that fine-tune circadian processes . Our knowledge of these components and pathways is far from exha... | If rodents , or indeed humans , are kept in constant darkness for a number of days , they continue to show patterns of sleep and wakefulness that repeat roughly every 24 hr . This internal ‘circadian rhythm’ controls many aspects of animal physiology , including body temperature , blood pressure , and hormone levels . ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Nuclear envelope protein MAN1 regulates clock through BMAL1 |
Sugars that contain glucose , such as sucrose , are generally preferred to artificial sweeteners owing to their post-ingestive rewarding effect , which elevates striatal dopamine ( DA ) release . While the post-ingestive rewarding effect , which artificial sweeteners do not have , signals the nutrient value of sugar an... | Sales of full-sugar fizzy drinks are almost triple those of diet versions , providing real-world confirmation of the laboratory finding that humans , as well as animals , prefer sugar to artificial sweeteners . However , it is not simply that sugary things taste better . Mice with a mutation that prevents them from per... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2013 | Hypothalamic melanin concentrating hormone neurons communicate the nutrient value of sugar |
Apicomplexan actin is important during the parasite's life cycle . Its polymerization kinetics are unusual , permitting only short , unstable F-actin filaments . It has not been possible to study actin in vivo and so its physiological roles have remained obscure , leading to models distinct from conventional actin beha... | Toxoplasma gondii is a parasite that commonly infects most warm-blooded animals and is thought to affect over two billion people worldwide . In most cases , the infection does not cause any symptoms , although it can lead to serious complications in pregnant women or people with a weakened immune system . T . gondii ha... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"microbiology",
"and",
"infectious",
"disease"
] | 2017 | Toxoplasma gondii F-actin forms an extensive filamentous network required for material exchange and parasite maturation |
All motor behaviors require precise temporal coordination of different muscle groups . Breathing , for example , involves the sequential activation of numerous muscles hypothesized to be driven by a primary respiratory oscillator , the preBötzinger Complex , and at least one other as-yet unidentified rhythmogenic popul... | A healthy adult at rest will breathe in and out around 20 times per minute . Each breath requires a complex series of coordinated muscle activity . Inhalation begins with the opening of the airway followed by the contraction of the diaphragm and the intercostal muscles between the ribs , causing the chest cavity to exp... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Material",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Atoh1-dependent rhombic lip neurons are required for temporal delay between independent respiratory oscillators in embryonic mice |
For coordinated circulation , vertebrate and invertebrate hearts require stereotyped arrangements of diverse cell populations . This study explores the process of cardiac cell diversification in the Drosophila heart , focusing on the two major cardioblast subpopulations: generic working myocardial cells and inflow valv... | Organs contain many different kinds of cells , each specialised to perform a particular role . The fruit fly heart , for example , has two types of muscle cells: generic heart muscle cells and ostial heart muscle cells . The generic cells contract to force blood around the body , whilst the ostial cells form openings t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2018 | Diversification of heart progenitor cells by EGF signaling and differential modulation of ETS protein activity |
As microtubule-organizing centers of animal cells , centrosomes guide the formation of the bipolar spindle that segregates chromosomes during mitosis . At mitosis onset , centrosomes maximize microtubule-organizing activity by rapidly expanding the pericentriolar material ( PCM ) . This process is in part driven by the... | Before a cell divides , it creates a copy of its genetic material ( DNA ) and evenly distributes it between the new ‘daughter’ cells with the help of a complex called the mitotic spindle . This complex is made of long cable-like protein chains called microtubules . To ensure that each daughter cell receives an equal am... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2018 | Co-translational protein targeting facilitates centrosomal recruitment of PCNT during centrosome maturation in vertebrates |
Life-long lack of growth hormone ( GH ) action can produce remarkable extension of longevity in mice . Here we report that GH treatment limited to a few weeks during development influences the lifespan of long-lived Ames dwarf and normal littermate control mice in a genotype and sex-specific manner . Studies in a separ... | For decades , research has shown that early-life events that happen when animals , including humans , are developing as embryos can later influence how those animals look and behave as adults . However , little is known about if the hormones that drive an animal’s growth shortly after its birth have long-lasting effect... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2017 | Longevity is impacted by growth hormone action during early postnatal period |
The Lon AAA+ protease ( LonA ) is a ubiquitous ATP-dependent proteolytic machine , which selectively degrades damaged proteins or native proteins carrying exposed motifs ( degrons ) . Here we characterize the structural basis for substrate recognition and discrimination by the N-terminal domain ( NTD ) of LonA . The re... | There are many different types of protein which each have different roles in biology . Most proteins are surrounded by water and are folded so that their water-attracting regions are on the outside and more fat-like regions , which repel water , are on the inside . When a protein becomes damaged or is assembled incorre... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2021 | Molecular insights into substrate recognition and discrimination by the N-terminal domain of Lon AAA+ protease |
Horizontal gene transfer is a major force in bacterial evolution . Mobile genetic elements are responsible for much of horizontal gene transfer and also carry beneficial cargo genes . Uncovering strategies used by mobile genetic elements to benefit host cells is crucial for understanding their stability and spread in p... | Many bacteria can ‘have sex’ – that is , they can share their genetic information and trade off segments of DNA . While these mobile genetic elements can be parasites that use the resources of their host to make more of themselves , some carry useful genes which , for example , help bacteria to fight off antibiotics . ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2021 | A mobile genetic element increases bacterial host fitness by manipulating development |
Craniofacial characteristics are highly informative for clinical geneticists when diagnosing genetic diseases . As a first step towards the high-throughput diagnosis of ultra-rare developmental diseases we introduce an automatic approach that implements recent developments in computer vision . This algorithm extracts p... | Rare genetic disorders affect around 8% of people , many of whom live with symptoms that greatly reduce their quality of life . Genetic diagnoses can provide doctors with information that cannot be obtained by assessing clinical symptoms , and this allows them to select more suitable treatments for patients . However ,... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"medicine",
"computational",
"and",
"systems",
"biology"
] | 2014 | Diagnostically relevant facial gestalt information from ordinary photos |
Analysis of the spatial distribution of endomembrane trafficking is fundamental to understand the mechanisms controlling cellular dynamics , cell homeostasy , and cell interaction with its external environment in normal and pathological situations . We present a semi-parametric framework to quantitatively analyze and v... | Proteins are the workhorses of the body , performing a range of roles that are essential for life . Often , this requires these molecules to move from one location to another inside a cell . Scientists are interested in following an individual protein in a living cell ‘in real time’ , as this helps understand what this... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"cell",
"biology",
"tools",
"and",
"resources"
] | 2018 | A quantitative approach for analyzing the spatio-temporal distribution of 3D intracellular events in fluorescence microscopy |
Behavioral plasticity is widespread in swarming animals , but little is known about its underlying neural and molecular mechanisms . Here , we report that a neuropeptide F ( NPF ) /nitric oxide ( NO ) pathway plays a critical role in the locomotor plasticity of swarming migratory locusts . The transcripts encoding two ... | Migratory locusts are widespread throughout the Eastern Hemisphere , especially in Asia , Australia and Africa . Although usually solitary insects , locusts can also form swarms made up of millions of individuals , which can devastate crops . Swarming can be studied on a smaller scale in the laboratory by forcing locus... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"neuroscience"
] | 2017 | The neuropeptide F/nitric oxide pathway is essential for shaping locomotor plasticity underlying locust phase transition |
The gaseous plant hormone ethylene regulates a multitude of growth and developmental processes . How the numerous growth control pathways are coordinated by the ethylene transcriptional response remains elusive . We characterized the dynamic ethylene transcriptional response by identifying targets of the master regulat... | All multicellular organisms , including plants , produce hormones—chemical messengers that are released in one part of an organism but act in another . The binding of hormones to receptor proteins on the surface of target cells activates signal transduction cascades , leading ultimately to changes in the transcription ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2013 | Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis |
To identify genetic and environmental factors contributing to the pathogenesis of non-alcoholic fatty liver disease , we examined liver steatosis and related clinical and molecular traits in more than 100 unique inbred mouse strains , which were fed a diet rich in fat and carbohydrates . A >30-fold variation in hepatic... | Non-alcoholic fatty liver disease is a major health problem worldwide and is caused by an abnormal build-up of fat molecules in liver cells that disrupts how the cells work . Although many people with the disease show only mild or no symptoms , if the disease progresses the consequences—such as organ damage and an incr... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"genetics",
"and",
"genomics"
] | 2015 | The genetic architecture of NAFLD among inbred strains of mice |
Interdisciplinary syntheses are needed to scale up discovery of the environmental drivers and molecular basis of adaptation in nature . Here we integrated novel approaches using whole genome sequences , satellite remote sensing , and transgenic experiments to study natural loss-of-function alleles associated with droug... | Water shortages caused by droughts lead to crop losses that affect billions of people around the world each year . By discovering how wild plants adapt to drought , it may be possible to identify traits and genes that help to improve the growth of crop plants when water is scarce . It has been suggested that plants hav... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"genetics",
"and",
"genomics"
] | 2018 | Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function |
Neural networks are typically defined by their synaptic connectivity , yet synaptic wiring diagrams often provide limited insight into network function . This is due partly to the importance of non-synaptic communication by neuromodulators , which can dynamically reconfigure circuit activity to alter its output . Here ... | Why do animals behave the way they do ? Behavior occurs in response to signals from the environment , such as those indicating food or danger , or signals from the body , such as those indicating hunger or thirst . The nervous system detects these signals and triggers an appropriate response , such as seeking food or f... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | Neuromodulatory connectivity defines the structure of a behavioral neural network |
Hematopoietic stem cells ( HSCs ) are maintained by a perivascular niche in bone marrow but it is unclear whether the niche is reciprocally regulated by HSCs . Here , we systematically assessed the expression and function of Angiopoietin-1 ( Angpt1 ) in bone marrow . Angpt1 was not expressed by osteoblasts . Angpt1 was... | In adults , blood cells develop from a set of stem cells that are found in bone marrow . There are also specialized blood vessels and cells called ‘stromal cells’ within the bone marrow that provide these stem cells with oxygen , nutrients , and other molecules . This local environment , or ‘niche’ , plays an important... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine"
] | 2015 | Hematopoietic stem and progenitor cells regulate the regeneration of their niche by secreting Angiopoietin-1 |
How tissue shape emerges from the collective mechanical properties and behavior of individual cells is not understood . We combine experiment and theory to study this problem in the developing wing epithelium of Drosophila . At pupal stages , the wing-hinge contraction contributes to anisotropic tissue flows that resha... | The individual cells in a developing animal embryo organize themselves into tissues with specific and reproducible shapes , which requires the cells to communicate with one another . Cells in tissues exert forces on their neighbors , and respond to being pushed and pulled by the cells around them . In the fruit fly Dro... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"physics",
"of",
"living",
"systems"
] | 2015 | Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing |
The cholinergic interneurons ( CINs ) of the striatum are crucial for normal motor and behavioral functions of the basal ganglia . Striatal CINs exhibit tonic firing punctuated by distinct pauses . Pauses occur in response to motivationally significant events , but their function is unknown . Here we investigated the e... | Nerve cells or neurons communicate with one another using electrical impulses and chemical messengers called neurotransmitters . Additional molecules known as neuromodulators regulate the communication process . In contrast to neurotransmitters , neuromodulators do not send messages directly from one neuron to the next... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Pauses in cholinergic interneuron firing exert an inhibitory control on striatal output in vivo |
Temperature-sensitive transient receptor potential ( TRP ) ion channels are members of the large tetrameric cation channels superfamily but are considered to be uniquely sensitive to heat , which has been presumed to be due to the existence of an unidentified temperature-sensing domain . Here we report that the homolog... | If you touch something too hot , it can cause you pain and damage your skin . Sensing the heat given off by an object or the temperature of the environment is possible , at least in part , because of proteins called temperature-sensitive TRP ion channels . These proteins are found in the cell membranes of nerve endings... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2014 | High temperature sensitivity is intrinsic to voltage-gated potassium channels |
Uropathogenic E . coli ( UPEC ) , which cause urinary tract infections ( UTI ) , utilize type 1 pili , a chaperone usher pathway ( CUP ) pilus , to cause UTI and colonize the gut . The pilus rod , comprised of repeating FimA subunits , provides a structural scaffold for displaying the tip adhesin , FimH . We solved the... | Escherichia coli , or E . coli for short , is a type of bacteria commonly found in the guts of people and animals . Certain types of E . coli can cause urinary tract infections ( UTIs ) : they travel from the digestive tract up to the bladder ( and sometimes to the kidneys ) where they provoke painful symptoms . To cau... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | Functional role of the type 1 pilus rod structure in mediating host-pathogen interactions |
FK506 ( Tacrolimus ) is a potent inhibitor of calcineurin that blocks IL2 production and is widely used to prevent transplant rejection and treat autoimmunity . FK506 treatment of dendritic cells ( FKDC ) limits their capacity to stimulate T cell responses . FK506 does not prevent DC survival , maturation , or costimul... | Although our health depends on our immune system's ability to recognize and attack foreign material , this same response can cause the body to reject an organ transplant or even to spontaneously attack itself ( this is called autoimmune disease ) . To help prevent rejection , patients who receive donated organs are giv... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"immunology",
"and",
"inflammation"
] | 2013 | Dendritic cells loaded with FK506 kill T cells in an antigen-specific manner and prevent autoimmunity in vivo |
Here , using mouse squamous cell carcinoma cells , we report a completely new function for the autophagy protein Ambra1 as the first described ‘spatial rheostat’ controlling the Src/FAK pathway . Ambra1 regulates the targeting of active phospho-Src away from focal adhesions into autophagic structures that cancer cells ... | In animal bodies , a mesh of proteins – known the extracellular matrix – holds cells together to give the body shape and make it more stable . Cells bind to the matrix using structures called focal adhesions . However , cells do not always stay in one place: in young animals , certain cells need to move around the body... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"cancer",
"biology"
] | 2017 | Ambra1 spatially regulates Src activity and Src/FAK-mediated cancer cell invasion via trafficking networks |
The mechanisms regulating synapse numbers during development and ageing are essential for normal brain function and closely linked to brain disorders including dementias . Using Drosophila , we demonstrate roles of the microtubule-associated protein Tau in regulating synapse numbers , thus unravelling an important cell... | Nerve cells form cable-like projections called axons that connect to other nerve cells to form the nervous system . Axons carry nerve impulses in the form of electrical messages , and they pass on these messages to other cells at junctions known as synapses . Specific patterns of connections between axons allow us to c... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"neuroscience"
] | 2016 | Tau and spectraplakins promote synapse formation and maintenance through Jun kinase and neuronal trafficking |
Ran binding protein 1 ( RanBP1 ) is a cytoplasmic-enriched and nuclear-cytoplasmic shuttling protein , playing important roles in nuclear transport . Much of what we know about RanBP1 is learned from fungi . Intrigued by the long-standing paradox of harboring an extra NES in animal RanBP1 , we discovered utterly unexpe... | Plant , animal and fungal cells all store their DNA inside the cell’s nucleus . Small molecules can freely cross the membrane that surrounds the nucleus , but pores in the membrane control when larger molecules enter or leave . This transport process is an essential part of healthy cell behavior . To leave the nucleus ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2019 | Distinct RanBP1 nuclear export and cargo dissociation mechanisms between fungi and animals |
Combining clonal analysis with a computational agent based model , we investigate how tissue-specific stem cells for neural retina ( NR ) and retinal pigmented epithelium ( RPE ) of the teleost medaka ( Oryzias latipes ) coordinate their growth rates . NR cell division timing is less variable , consistent with an upstr... | By the time babies reach adulthood , they have grown many times larger than they were at birth . This development is driven by an increase in the number and size of cells in the body . In particular , special types of cells , called stem cells , act as a reservoir for tissues: they divide to create new cells that will ... | [
"Abstract",
"Introduction",
"Results",
"Discussion"
] | [
"developmental",
"biology",
"computational",
"and",
"systems",
"biology"
] | 2019 | Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish |
Molecular mimicry is an evolutionary strategy adopted by viruses to exploit the host cellular machinery . We report that SARS-CoV-2 has evolved a unique S1/S2 cleavage site , absent in any previous coronavirus sequenced , resulting in the striking mimicry of an identical FURIN-cleavable peptide on the human epithelial ... | Viruses hijack the cellular machinery of humans to infect their cells and multiply . The virus causing the global COVID-19 pandemic , SARS-CoV-2 , is no exception . Identifying which proteins in human cells the virus co-opts is crucial for developing new ways to diagnose , prevent and treat COVID-19 infections . SARS-C... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"medicine",
"computational",
"and",
"systems",
"biology"
] | 2020 | SARS-CoV-2 strategically mimics proteolytic activation of human ENaC |
Oxidative protein folding in the endoplasmic reticulum ( ER ) has emerged as a potentially significant source of cellular reactive oxygen species ( ROS ) . Recent studies suggest that levels of ROS generated as a byproduct of oxidative folding rival those produced by mitochondrial respiration . Mechanisms that protect ... | The endoplasmic reticulum is the cellular compartment where approximately one third of the cell's proteins are made . Inside , chaperone molecules bind to newly made protein chains and help them to fold into the three-dimensional structure required for the protein to work correctly . A chaperone called Ero1 helps to fa... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2014 | Redox signaling via the molecular chaperone BiP protects cells against endoplasmic reticulum-derived oxidative stress |
Aberrant signaling through the Raf/MEK/ERK ( ERK/MAPK ) pathway causes pathology in a family of neurodevelopmental disorders known as 'RASopathies' and is implicated in autism pathogenesis . Here , we have determined the functions of ERK/MAPK signaling in developing neocortical excitatory neurons . Our data reveal a cr... | In the nervous system , cells called neurons form networks that relay information in the form of electrical signals around the brain and the rest of the body . Typically , an electrical signal travels from branch-like structures at one end of the cell , through the cell body and then along a long fiber called an axon t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"neuroscience"
] | 2016 | Layer specific and general requirements for ERK/MAPK signaling in the developing neocortex |
In the unfolded protein response ( UPR ) , stress in the endoplasmic reticulum ( ER ) activates a large transcriptional program to increase ER folding capacity . During the budding yeast UPR , Ire1 excises an intron from the HAC1 mRNA and the exon products of cleavage are ligated , and the translated protein induces hu... | Like any economical factory , cells tune the size of their protein assembly line to suit demand . Proteins consist of strings of amino acids , built from template molecules called mRNAs , that must be folded into specific 3D structures for them to work correctly . If these protein strings are produced faster than they ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2019 | Multiple decay events target HAC1 mRNA during splicing to regulate the unfolded protein response |
Color , an important visual cue for survival , is encoded by comparing signals from photoreceptors with different spectral sensitivities . The mouse retina expresses a short wavelength-sensitive and a middle/long wavelength-sensitive opsin ( S- and M-opsin ) , forming opposing , overlapping gradients along the dorsal-v... | Many primates , including humans , can see color better than most other mammals . This difference is due to the variety of light-detecting proteins – called opsins – that are produced in the eye by cells known as cones . While humans have three , mice only have two different opsins , known as S and M , which detect blu... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"short",
"report",
"neuroscience"
] | 2020 | True S-cones are concentrated in the ventral mouse retina and wired for color detection in the upper visual field |
SynGAP is a Ras/Rap GTPase-activating protein ( GAP ) that is a major constituent of postsynaptic densities ( PSDs ) from mammalian forebrain . Its α1 isoform binds to all three PDZ ( PSD-95 , Discs-large , ZO-1 ) domains of PSD-95 , the principal PSD scaffold , and can occupy as many as 15% of these PDZ domains . We p... | The formation of memories is believed to depend on the strengthening of connections , called synapses , between neurons in the brain . When neurons are activated together , their synaptic connections become permanently strengthened to record the memory . This strengthening is called activity-dependent long-term potenti... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"neuroscience"
] | 2016 | A model for regulation by SynGAP-α1 of binding of synaptic proteins to PDZ-domain 'Slots' in the postsynaptic density |
In eukaryotes , intra-chromosomal recombination generates DNA circles , but little is known about how cells react to them . In yeast , partitioning of such circles to the mother cell at mitosis ensures their loss from the population but promotes replicative ageing . Nevertheless , the mechanisms of partitioning are deb... | Budding yeast is a microorganism that has been widely studied to understand how it and many other organisms , including animals , age over time . This yeast is so named because it proliferates by ‘budding’ daughter cells out of the surface of a mother cell . For each daughter cell that buds , the mother cell loses some... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2014 | Role of SAGA in the asymmetric segregation of DNA circles during yeast ageing |
Conceptual metaphors are linguistic constructions . Such a metaphor is humans’ mental representation of social rank as a pyramidal-like structure . High-ranked individuals are represented in higher positions than low-ranked individuals . We show that conceptual metaphorical mapping between social rank and the represent... | It is thought that the ability to connect an abstract concept to something physical helps us to understand abstract ideas more easily . Examples include the use of conceptual metaphors that draw parallels between something abstract , such as social status , and physical position , even though there is no connection bet... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2013 | Conceptual metaphorical mapping in chimpanzees (Pan troglodytes) |
Though horizontal gene transfer ( HGT ) is widespread , genes and taxa experience biased rates of transferability . Curiously , independent transmission of homologous DNA to archaea , bacteria , eukaryotes , and viruses is extremely rare and often defies ecological and functional explanations . Here , we demonstrate th... | Living things inherit most of their genetic material from their parents , so genes tend to be passed on from one generation to the next—from ancestors to descendants . Sometimes , however , DNA is transferred from one organism to another by other means . These events , collectively called horizontal gene transfer , are... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2014 | Antibacterial gene transfer across the tree of life |
ISWI family chromatin remodelers typically organize nucleosome arrays , while SWI/SNF family remodelers ( RSC ) typically disorganize and eject nucleosomes , implying an antagonism that is largely unexplored in vivo . Here , we describe two independent genetic screens for rsc suppressors that yielded mutations in the p... | The genome of an organism can contain hundreds to thousands of genes . However , these genes are not all active at the same time . Instead , mechanisms exist that control when genes are switched off or on . One such mechanism alters how tightly DNA is packaged into a structure called chromatin . To form chromatin , DNA... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2015 | The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism |
A plethora of non-protein coding RNAs are produced throughout eukaryotic genomes , many of which are transcribed antisense to protein-coding genes and could potentially instigate RNA interference ( RNAi ) responses . Here we have used a synthetic RNAi system to show that gene copy number is a key factor controlling RNA... | Genes contain the codes that are needed to make the proteins used by cells . This code is transcribed to make a messenger RNA molecule that is then translated to make a protein . However , other types of RNA called non-coding RNA molecules can disrupt this process by binding to messenger RNA molecules , with matching s... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"genetics",
"and",
"genomics"
] | 2014 | Endogenous RNA interference is driven by copy number |
Variants in IFIH1 , a gene coding the cytoplasmatic RNA sensor MDA5 , regulate the response to viral infections . We hypothesized that IFIH1 rs199076 variants would modulate host response and outcome after severe COVID-19 . Patients admitted to an intensive care unit ( ICU ) with confirmed COVID-19 were prospectively s... | Patients with severe COVID-19 often need mechanical ventilation to help them breathe and other types of intensive care . The outcome for many of these patients depends on how their immune system reacts to the infection . If the inflammatory response triggered by the immune system is too strong , this can cause further ... | [
"Abstract",
"Introduction",
"Materials",
"and",
"methods",
"Results",
"Discussion"
] | [
"medicine",
"immunology",
"and",
"inflammation"
] | 2022 | Effects of IFIH1 rs1990760 variants on systemic inflammation and outcome in critically ill COVID-19 patients in an observational translational study |
We study the morphogenesis and evolutionary origin of the spectacular erectile ruff of the frilled dragon ( Chlamydosaurus kingii ) . Our comparative developmental analyses of multiple species suggest that the ancestor of Episquamata reptiles developed a neck fold from the hyoid branchial arch by preventing it to fully... | In Jurassic Park , while the computer programmer Dennis Nedry attempts to smuggle dinosaur embryos off the island , he gets attacked and killed by a mid-sized dinosaur that erects a frightening neck frill . This fictional dinosaur is clearly inspired from a real animal known as the ‘frilled dragon’ , that lives today i... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"physics",
"of",
"living",
"systems"
] | 2019 | Elastic instability during branchial ectoderm development causes folding of the Chlamydosaurus erectile frill |
Organelles are distributed to daughter cells , via inheritance pathways . However , it is unclear whether there are mechanisms beyond inheritance , which ensure that organelles are present in all cells . Here we present the unexpected finding that the yeast vacuole plays a positive essential role in initiation of the c... | Animals , fungi and other eukaryotes have cells that are divided into sub-compartments that are called organelles . Each type of organelle serves a specific purpose that is essential for the life of the cell . Yeast cells have a large organelle called a vacuole; the inside of the vacuole is acidic and contains enzymes ... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2015 | The vacuole/lysosome is required for cell-cycle progression |
Neurons show diverse timescales , so that different parts of a network respond with disparate temporal dynamics . Such diversity is observed both when comparing timescales across brain areas and among cells within local populations; the underlying circuit mechanism remains unknown . We examine conditions under which sp... | Many biological systems can be thought of as networks in which a large number of elements , called ‘nodes’ , are connected to each other . The brain , for example , is a network of interconnected neurons , and the changing activity patterns of this network underlie our experience of the world around us . Within the bra... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Methods"
] | [
"neuroscience"
] | 2014 | A diversity of localized timescales in network activity |
The controversy surrounding 'gain-of-function' experiments on high-consequence avian influenza viruses has highlighted the role of ferret transmission experiments in studying the transmission potential of novel influenza strains . However , the mapping between influenza transmission in ferrets and in humans is unsubsta... | Every year , thousands of people develop influenza ( flu ) . After being infected by the influenza virus , the immune systems of most people adapt to fight off the virus if it is encountered again . However , there are many different strains of influenza , and new strains constantly evolve . Therefore , although someon... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health",
"microbiology",
"and",
"infectious",
"disease"
] | 2015 | Mapping influenza transmission in the ferret model to transmission in humans |
In the neocortex , critical periods ( CPs ) of plasticity are closed following the accumulation of perineuronal nets ( PNNs ) around parvalbumin ( PV ) -positive inhibitory interneurons . However , how PNNs tune cortical function and plasticity is unknown . We found that PNNs modulated the gain of visual responses and ... | Our brains continue to develop after we are born . As sights , sounds and smells flood our senses , networks of neurons go through periods of rapid rewiring . Known as ‘postnatal critical periods’ , the brain uses these periods to adapt to the signals supplied by our senses . For example , a postnatal critical period e... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Perineuronal nets control visual input via thalamic recruitment of cortical PV interneurons |
Common garden experiments that inoculate a standardised growth medium with synthetic microbial communities ( i . e . constructed from individual isolates or using dilution cultures ) suggest that the ability of the community to resist invasions by additional microbial taxa can be predicted by the overall community prod... | Much like animals and plants , microorganisms such as bacteria and fungi naturally live in communities , where different species exist together and share the same resources . These communities can be quite stable over time and resist the invasion of new species – for example , by collectively and rapidly consuming all ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"microbiology",
"and",
"infectious",
"disease"
] | 2021 | Relationships between community composition, productivity and invasion resistance in semi-natural bacterial microcosms |
Methadone maintenance treatment ( MMT ) can alleviate opioid dependence . However , MMT possibly increases the risk of motor vehicle collisions . The current study investigated preliminary estimation of motor vehicle collision incidence rates . Furthermore , in this population-based retrospective cohort study with freq... | In 2019 , 58 million people were estimated to use opioids – a group of substances that include drugs like heroin and morphine . Dependence on opioids can be managed using a prescribed dose of an opioid called methadone , which is administered through a controlled treatment plan . This so-called methadone maintenance tr... | [
"Abstract",
"Introduction",
"Methods",
"Results",
"Discussion"
] | [
"medicine"
] | 2021 | Risk of motor vehicle collisions after methadone use |
We determined whether the mutations found in ovarian cancers could be identified in the patients' ovarian cyst fluids . Tumor-specific mutations were detectable in the cyst fluids of 19 of 23 ( 83% ) borderline tumors , 10 of 13 ( 77% ) type I cancers , and 18 of 18 ( 100% ) type II cancers . In contrast , no mutations... | More than a third of women develop ovarian cysts during their lifetimes . The vast majority of these cysts are harmless , but a small number are caused by ovarian cancers . These cancers often produce no symptoms until the disease has spread throughout the abdomen or to other organs , so many women go undiagnosed until... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"medicine",
"cancer",
"biology"
] | 2016 | Diagnostic potential of tumor DNA from ovarian cyst fluid |
Pioneering work with nonhuman primates and recent human studies established intracortical microstimulation ( ICMS ) in primary somatosensory cortex ( S1 ) as a method of inducing discriminable artificial sensation . However , these artificial sensations do not yet provide the breadth of cutaneous and proprioceptive per... | Nerves throughout the body send information about touch , temperature , body position and pain through the spinal cord to the brain . A part of the brain called the somatosensory cortex processes this information . Spinal cord injuries disrupt these messages . Even though the somatosensory cortex has not been damaged ,... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"neuroscience"
] | 2018 | Proprioceptive and cutaneous sensations in humans elicited by intracortical microstimulation |
The mechanism of transport through the Golgi complex is not completely understood , insofar as no single transport mechanism appears to account for all of the observations . Here , we compare the transport of soluble secretory proteins ( albumin and α1-antitrypsin ) with that of supramolecular cargoes ( e . g . , proco... | The Golgi is a structure within cells where proteins and other large molecules are modified and prepared for delivery to locations inside or outside of the cell . Each Golgi is made from a stack of flattened sacs called cisternae that are filled with fluid and enclosed by a membrane . Proteins and other molecules are t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2014 | Transport of soluble proteins through the Golgi occurs by diffusion via continuities across cisternae |
Models of cell function that assign a variable to each gene frequently lead to systems of equations with many parameters whose behavior is obscure . Geometric models reduce dynamics to intuitive pictorial elements that provide compact representations for sparse in vivo data and transparent descriptions of developmental... | At first , embryos are made up of identical cells . Then , as the embryo develops , these cells specialize into different types , such as heart and brain cells . Chemical signals sent and received by the cells are key to forming the right type of cell at the right time and place . The cellular machinery that produces a... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"physics",
"of",
"living",
"systems"
] | 2017 | Gene-free methodology for cell fate dynamics during development |
The signal recognition particle ( SRP ) directs translating ribosome-nascent chain complexes ( RNCs ) that display a signal sequence to protein translocation channels in target membranes . All previous work on the initial step of the targeting reaction , when SRP binds to RNCs , used stalled and non-translating RNCs . ... | Genes contain the instructions needed to make proteins from smaller building blocks called amino acids . These instructions are first transcribed to produce molecules of messenger RNA , which are then translated by a ribosome . This ‘molecular machine’ translates the instructions in the messenger RNA into the sequence ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2014 | Real-time observation of signal recognition particle binding to actively translating ribosomes |
Copy number alterations ( CNAs ) play an important role in molding the genomes of breast cancers and have been shown to be clinically useful for prognostic and therapeutic purposes . However , our knowledge of intra-tumoral genetic heterogeneity of this important class of somatic alterations is limited . Here , using s... | Cells in the body remain healthy by tightly preventing and repairing random changes , or mutations , in their genetic material . In cancer cells , however , these mechanisms can break down . When these cells grow and multiply , they can then go on to accumulate many mutations . As a result , cancer cells in the same tu... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"genetics",
"and",
"genomics",
"cancer",
"biology"
] | 2020 | Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing |
Mitotic spindle orientation is crucial for symmetric vs asymmetric cell division and depends on astral microtubules . Here , we show that distinct subpopulations of astral microtubules exist , which have differential functions in regulating spindle orientation and division symmetry . Specifically , in polarized stem ce... | A stem cell can divide in two ways . Either it can split symmetrically into two identical daughter stem cells , or it can split asymmetrically into a stem cell and a specialist cell . The structure that forms inside the dividing cell to separate pairs of chromosomes—called the mitotic spindle—also partitions the molecu... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2014 | Specific polar subpopulations of astral microtubules control spindle orientation and symmetric neural stem cell division |
Transcription activator-like effectors ( TALEs ) are sequence-specific DNA binding proteins found in a range of plant pathogenic bacteria , where they play important roles in host-pathogen interactions . However , it has been unclear how TALEs , after they have been injected into the host cells , activate transcription... | Around the world , bacterial infections reduce the yields of many important crops like rice , tomatoes , peppers and citrus fruits . Xanthomonas is a particularly widespread genus of bacteria; it consists of almost 30 species that cause diseases in more than 400 plant hosts , including bacterial blight and bacterial st... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2016 | A host basal transcription factor is a key component for infection of rice by TALE-carrying bacteria |
Understanding how gene expression programs are controlled requires identifying regulatory relationships between transcription factors and target genes . Gene regulatory networks are typically constructed from gene expression data acquired following genetic perturbation or environmental stimulus . Single-cell RNA sequen... | Organisms switch their genes on and off to adapt to changing environments . This takes place thanks to complex networks of regulators that control which genes are actively ‘read’ by the cell to create the RNA molecules that are needed at the time . Piecing together these networks is key to fully understand the inner wo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology"
] | 2020 | Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments |
The ability to generalize previously learned information to novel situations is fundamental for adaptive behavior . However , too wide or too narrow generalization is linked to neuropsychiatric disorders . Previous research suggests that interactions between the dopaminergic system and the hippocampus may play a role i... | In the 1920s , two psychologists taught a young child known as ‘Little Albert’ to fear a white rat . They did so by striking a metal bar with a hammer whenever the rat was present . After experiencing the rat and noise together on multiple occasions , Little Albert eventually began to cry whenever the rat appeared . Ho... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2016 | Dopamine regulates stimulus generalization in the human hippocampus |
Transcriptional memory allows certain genes to respond to previously experienced signals more robustly . However , whether and how the key proinflammatory cytokine TNF-α mediates transcriptional memory are poorly understood . Using HEK293F cells as a model system , we report that sustained TNF-α stimulation induces tra... | Genes are the instruction manuals of life and contain the information needed to build the building blocks that keep cells alive . To read these instructions , cells use specific signals that activate genes . The process , known as gene expression , is tightly controlled and for the most part , fairly stable . But gene ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2020 | Sustained TNF-α stimulation leads to transcriptional memory that greatly enhances signal sensitivity and robustness |
Tool use has allowed humans to become one of the most successful species . However , tool-assisted foraging has also pushed many of our prey species to extinction or endangerment , a technology-driven process thought to be uniquely human . Here , we demonstrate that tool-assisted foraging on shellfish by long-tailed ma... | Tools have helped us to become one of the most successful species on Earth . However , our use of tools for hunting and foraging has also caused many prey species to become endangered , or even extinct . In some cases , it has also led to evolutionary changes in prey species . For example , over-harvesting of shellfish... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology"
] | 2017 | Resource depletion through primate stone technology |
Ultradian ( ∼4 hr ) rhythms in locomotor activity that do not depend on the master circadian pacemaker in the suprachiasmatic nucleus have been observed across mammalian species , however , the underlying mechanisms driving these rhythms are unknown . We show that disruption of the dopamine transporter gene lengthens t... | The sleep-wake cycle of mammals is controlled by a ‘circadian clock’ within the brain , which is synchronized to the day–night cycle . However , other aspects of mammalian physiology including alertness and activity levels , as well as appetite and body temperature—fluctuate in cycles that repeat every few hours . Thes... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | A highly tunable dopaminergic oscillator generates ultradian rhythms of behavioral arousal |
The widely accepted model of G1 cell cycle progression proposes that cyclin D:Cdk4/6 inactivates the Rb tumor suppressor during early G1 phase by progressive multi-phosphorylation , termed hypo-phosphorylation , to release E2F transcription factors . However , this model remains unproven biochemically and the biologica... | Cells go through a tightly controlled , multi-step procedure before they divide . This cell division program—the cell cycle—is necessary for preventing unrestrained cellular growth , which may lead to cancer . Proteins called cyclins control the progression through each of the phases of the cell cycle , with different ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2014 | Cyclin D activates the Rb tumor suppressor by mono-phosphorylation |
Supramolecular signaling assemblies are of interest for their unique signaling properties . A µm scale signaling assembly , the central supramolecular signaling cluster ( cSMAC ) , forms at the center of the interface of T cells activated by antigen-presenting cells . We have determined that it is composed of multiple ... | Cells receive dozens of signals at different times and in different places . Integrating incoming information and deciding how to respond is no easy task . Signaling molecules on the cell surface pass messages inwards using chemical messengers that interact in complicated networks within the cell . One way to unravel t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"immunology",
"and",
"inflammation"
] | 2019 | Transient protein accumulation at the center of the T cell antigen-presenting cell interface drives efficient IL-2 secretion |
Opioids are perhaps the most effective analgesics in medicine . However , between 1999 and 2018 , over 400 , 000 people in the United States died from opioid overdose . Excessive opioids make breathing lethally slow and shallow , a side-effect called opioid-induced respiratory depression . This doubled-edged sword has ... | Opioid drugs are commonly prescribed due to their powerful painkilling properties . However , when misused , these compounds can cause breathing to become dangerously slow and shallow: between 1999 and 2018 , over 400 , 000 people died from opioid drug overdoses in the United States alone . Exactly how the drugs affect... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"neuroscience"
] | 2021 | ß-arrestin 2 germline knockout does not attenuate opioid respiratory depression |
In order to represent complex stimuli , principle neurons of associative learning regions receive combinatorial sensory inputs . Density of combinatorial innervation is theorized to determine the number of distinct stimuli that can be represented and distinguished from one another , with sparse innervation thought to o... | Despite having a limited number of senses , animals can perceive a huge range of sensations . One possible explanation is that the brain combines several stimuli to make each specific sensation . The olfactory learning system in the fruit fly Drosophila melanogaster is in a part of the brain called the mushroom body . ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"neuroscience"
] | 2020 | Presynaptic developmental plasticity allows robust sparse wiring of the Drosophila mushroom body |
The intergenic IRES of Cricket Paralysis Virus ( CrPV-IRES ) forms a tight complex with 80S ribosomes capable of initiating the cell-free synthesis of complete proteins in the absence of initiation factors . Such synthesis raises the question of what effect the necessary IRES dissociation from the tRNA binding sites , ... | Inside cells , machines called ribosomes make proteins using instructions carried by molecules of messenger RNA ( or mRNA ) . The ribosomes bind to the mRNA and then move along it to assemble the proteins in a process called translation . The first step of translation – when the ribosome binds to the mRNA – is known as... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2016 | Kinetics of initiating polypeptide elongation in an IRES-dependent system |
Constrained , cyclic peptides encoded by plant genes represent a new generation of drug leads . Evolution has repeatedly recruited the Cys-protease asparaginyl endopeptidase ( AEP ) to perform their head-to-tail ligation . These macrocyclization reactions use the substrates amino terminus instead of water to deacylate ... | Most proteins are long , chain-like molecules that have two ends respectively called the N-terminus and C-terminus . However , certain proteins can close on themselves to become circular . This requires a chemical reaction between the N- and C-termini , which creates a strong bond between the two extremities . To go th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2018 | Structural basis of ribosomal peptide macrocyclization in plants |
Mollicutes , a widespread class of bacteria associated with animals and plants , were recently identified as abundant abdominal endosymbionts in healthy workers of attine fungus-farming leaf-cutting ants . We obtained draft genomes of the two most common strains harbored by Panamanian fungus-growing ants . Reconstructi... | Bacteria live inside the gut of most creatures . Some are harmful , some beneficial , and some have no clear effects . Studying the genetic material ( the genome ) of gut bacteria has revealed how they can improve the health , efficiency , and reproductive success of their hosts . For example , studies show that insect... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"evolutionary",
"biology"
] | 2018 | Reconstructing the functions of endosymbiotic Mollicutes in fungus-growing ants |
Cell surface Fc receptors activate inflammation and are tightly controlled to prevent autoimmunity . Antibodies also simulate potent immune signalling from inside the cell via the cytosolic antibody receptor TRIM21 , but how this is regulated is unknown . Here we show that TRIM21 signalling is constitutively repressed ... | Antibodies are molecules made by the immune system that protect us from infections . They were discovered over 100 years ago , and for most of that time scientists thought they only worked in the bloodstream . Yet recent research showed that when a virus infects our cells it also carries antibodies in with it . Once in... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2018 | Intracellular antibody signalling is regulated by phosphorylation of the Fc receptor TRIM21 |
Robust sleep/wake rhythms are important for health and cognitive function . Unfortunately , many people are living in an environment where their circadian system is challenged by inappropriate meal- or work-times . Here we scheduled food access to the sleep time and examined the impact on learning and memory in mice . ... | Many processes within the body follow an approximately 24-hour cycle . In addition to patterns of sleep and wakefulness , such circadian rhythms help to regulate body temperature , blood pressure and hormone levels . They also affect when we feel hungry , when our muscles work most efficiently , and when we are mentall... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2015 | Misaligned feeding impairs memories |
Chromosome instability ( CIN ) is deleterious to normal cells because of the burden of aneuploidy . However , most human solid tumors have an abnormal karyotype implying that gain and loss of chromosomes by cancer cells confers a selective advantage . CIN can be induced in the mouse by inactivating the spindle assembly... | An estimated 350 billion of the cells in the human body are dividing at any given moment . Every cell division requires the 46 chromosomes in the cell , which store the genetic information that the cell needs to survive , to be copied and distributed evenly between the two new cells . Sometimes mistakes in cell divisio... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"cancer",
"biology"
] | 2017 | Deletion of the MAD2L1 spindle assembly checkpoint gene is tolerated in mouse models of acute T-cell lymphoma and hepatocellular carcinoma |
Determining the structures , kinetics , thermodynamics and mechanisms that underlie conformational exchange processes in proteins remains extremely difficult . Only in favourable cases is it possible to provide atomic-level descriptions of sparsely populated and transiently formed alternative conformations . Here we be... | Proteins are the workhorses of cells , where they perform a wide range of roles . To do so , they adopt specific three-dimensional structures that enable them to interact with other molecules as necessary . Often a protein needs to be able to shift between different states with distinct structures as it goes about its ... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2016 | Mapping transiently formed and sparsely populated conformations on a complex energy landscape |
Increases in ocean temperature are associated with changes in the distribution of fish stocks , and the foraging regimes and maternal attendance patterns of marine mammals . However , it is not well understood how these changes affect offspring health and survival . The maternal attendance patterns and immunity of Sout... | Every year off the coasts of Chile , Guafo Island becomes a nursery for South American fur seals pups . Mother fur seals leave their young on the beaches , going out at sea to hunt for fish before returning to the shore to nurse . These first few months are dangerous for young seals , with many dying because of hookwor... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | Immune-mediated hookworm clearance and survival of a marine mammal decrease with warmer ocean temperatures |
Cdc48 is a AAA+ ATPase that plays an essential role for many cellular processes in eukaryotic cells . An archaeal homologue of this highly conserved enzyme was shown to directly interact with the 20S proteasome . Here , we analyze the occurrence and phylogeny of a Cdc48 homologue in Actinobacteria and assess its cellul... | Cells use proteins to carry out the biological processes necessary for life . If a protein becomes damaged or is no longer needed , cells must dispose of it , just as we might take out the trash . The cell’s main ‘garbage disposal unit’ is the proteasome , a barrel-shaped molecular machine that breaks down unwanted pro... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2018 | Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms |
Metagenomics has revealed hundreds of species in almost all microbiota . In a few well-studied cases , microbial communities have been observed to coordinate their metabolic fluxes . In principle , microbes can divide tasks to reap the benefits of specialization , as in human economies . However , the benefits and stab... | Microbes are found in virtually every environment on Earth . Like other organisms , microbes grow by using enzymes to convert nutrients into proteins , DNA and other molecules that make up their cells . Together , these chemical transformations define the “metabolism” of a microbe . In any given environment , there is ... | [
"Abstract",
"Introduction",
"Results",
"Discussion"
] | [
"ecology",
"physics",
"of",
"living",
"systems"
] | 2017 | Microbial consortia at steady supply |
Mechanotransducer channels at the tips of sensory stereocilia of inner ear hair cells are gated by the tension of 'tip links' interconnecting stereocilia . To ensure maximal sensitivity , tip links are tensioned at rest , resulting in a continuous influx of Ca2+ into the cell . Here , we show that this constitutive Ca2... | Our sense of hearing depends on cells known as hair cells that line the inner ear . Each hair cell has tiny projections called stereocilia , which are arranged in a bundle with rows of increasing height like a staircase and are connected to each other by tiny filaments called tip-links . When sound waves hit the stereo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2017 | Mechanotransduction current is essential for stability of the transducing stereocilia in mammalian auditory hair cells |
Schnyder corneal dystrophy ( SCD ) is an autosomal dominant disorder in humans characterized by abnormal accumulation of cholesterol in the cornea . SCD-associated mutations have been identified in the gene encoding UBIAD1 , a prenyltransferase that synthesizes vitamin K2 . Here , we show that sterols stimulate binding... | People with a rare genetic disorder called ‘Schnyder corneal dystrophy’ gradually lose their vision , because their corneas become increasingly cloudy . This cloudiness is caused by a build-up of excessive amounts of cholesterol , and the disorder itself is caused by mutations in a gene that encodes a protein called UB... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2015 | The prenyltransferase UBIAD1 is the target of geranylgeraniol in degradation of HMG CoA reductase |
The production of offspring is energetically costly and relies on incompletely understood mechanisms that generate a positive energy balance . In mothers of many species , changes in key energy-associated internal organs are common yet poorly characterised functionally and mechanistically . In this study , we show that... | Producing offspring places extra energy demands on individuals . Female animals—which generally invest more time and resources than the males—need to ensure that sufficient nutrients reach their offspring during pregnancy and lactation . The small intestines of many female animals increase in size during this period , ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2015 | Endocrine remodelling of the adult intestine sustains reproduction in Drosophila |
Massive zygotic transcription begins in many organisms during the midblastula transition when the cell cycle of the dividing egg slows down . A few genes are transcribed before this stage but how this differential activation is accomplished is still an open question . We have performed ChIP-seq experiments on tightly s... | Fertilized eggs—zygotes—develop into embryos via several distinct stages . In many animals , the zygote initially undergoes rapid rounds of genome replication; however , this hectic activity is not controlled by the zygote itself . Instead , the mother deposits RNA molecules in the egg as it forms inside her , and afte... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"developmental",
"biology"
] | 2013 | A global change in RNA polymerase II pausing during the Drosophila midblastula transition |
Poly ( ADP-ribose ) polymerase 1 ( PARP1 ) is both a first responder to DNA damage and a chromatin architectural protein . How PARP1 rapidly finds DNA damage sites in the context of a nucleus filled with undamaged DNA , to which it also binds , is an unresolved question . Here , we show that PARP1 association with DNA ... | Our cells constantly withstand damage that can lead to breaks in the strands of our DNA . These cuts need to be fixed for the cell to stay healthy . When a break happens , one of the first responders to the scene is a protein known as PARP1 . It binds to the ruptured strand ( or strands ) and then it recruits other rep... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2018 | Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism |
Tumors defective for DNA polymerase ( Pol ) ε proofreading have the highest tumor mutation burden identified . A major unanswered question is whether loss of Pol ε proofreading by itself is sufficient to drive this mutagenesis , or whether additional factors are necessary . To address this , we used a combination of ne... | New cells are made when an existing cell divides in two . Each time a cell divides , it duplicates its DNA so that each new cell inherits a complete copy . Molecular machines called DNA polymerases make these DNA copies . The main DNA polymerases , known as delta and epsilon , can “proofread” the new DNA , which ensure... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cancer",
"biology"
] | 2018 | Explosive mutation accumulation triggered by heterozygous human Pol ε proofreading-deficiency is driven by suppression of mismatch repair |
Pain is a prevalent symptom of Parkinson’s disease , and is effectively treated by deep brain stimulation of the subthalamic nucleus ( STN ) . However , the link between pain and the STN remains unclear . In the present work , using in vivo electrophysiology in rats , we report that STN neurons exhibit complex tonic an... | Parkinson’s disease is a condition affecting the human brain that becomes worse over time . The most common symptoms are tremors , muscle spasms and movements that are much slower than normal; all of which decrease an individual’s quality of life . Although there is currently no cure , the brain structures involved in ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Revealing a novel nociceptive network that links the subthalamic nucleus to pain processing |
Flexible neural networks , such as the interconnected spinal neurons that control distinct motor actions , can switch their activity to produce different behaviors . Both excitatory ( E ) and inhibitory ( I ) spinal neurons are necessary for motor behavior , but the influence of recruiting different ratios of E-to-I ce... | The nerve cells or neurons within an animal’s nervous system connect with one another like the wires in a complex circuit . Each neuron can send and receive signals and a major challenge in neuroscience is to understand how these circuits of neurons behave . To do this , researchers often use genetic tools and computer... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Material",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2017 | Speed and segmentation control mechanisms characterized in rhythmically-active circuits created from spinal neurons produced from genetically-tagged embryonic stem cells |
Gliomas are highly malignant brain tumors with poor prognosis and short survival . NAD+ has been shown to impact multiple processes that are dysregulated in cancer; however , anti-cancer therapies targeting NAD+ synthesis have had limited success due to insufficient mechanistic understanding . Here , we adapted a Droso... | One of the most common types of brain cancer , glioma , emerges when harmful mutations take place in the ‘glial’ cells tasked with supporting neurons . When these genetically damaged cells are not fixed or eliminated , they can go on to multiply uncontrollability . A protein known as p53 can help to repress emerging tu... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience",
"cancer",
"biology"
] | 2021 | NMNAT promotes glioma growth through regulating post-translational modifications of P53 to inhibit apoptosis |
The receptor tyrosine kinase Her2 , an intensely pursued drug target , differs from other members of the EGFR family in that it does not bind EGF-like ligands , relying instead on heterodimerization with other ( ligand-bound ) EGFR-family receptors for activation . The structural basis for Her2 heterodimerization , how... | ErbB proteins are found in most multi-cellular organisms , and are involved in the regulation of a number of important cellular processes , including proliferation , migration , and differentiation . Humans have four ErbB proteins , which span the plasma membrane of cells . These proteins respond to interactions with m... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2013 | Her2 activation mechanism reflects evolutionary preservation of asymmetric ectodomain dimers in the human EGFR family |
High resolution crystal structures of DNA polymerase intermediates are needed to study the mechanism of DNA synthesis in cells . Here we report five crystal structures of DNA polymerase I that capture new conformations for the polymerase translocation and nucleotide pre-insertion steps in the DNA synthesis pathway . We... | DNA molecules consist of two separate strands that spiral around each other to form a structure called the double helix . Each strand contains repeating units , with every unit consisting of a phosphate group and a sugar molecule bound to one of four bases . The two strands are held together by bonds between the bases ... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2018 | Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway |
A broadly known method to stimulate the growth potential of axons is to elevate intracellular levels of cAMP , however the cellular pathway ( s ) that mediate this are not known . Here we identify the Dual Leucine-zipper Kinase ( DLK , Wnd in Drosophila ) as a critical target and effector of cAMP in injured axons . DLK... | Adult mammals typically cannot repair damage to the nerve fibers in their brain or spinal cord . This is because these nerve cells cannot generally grow new nerve fibers . However this inability to regenerate nerve fibers is not set in stone . Instead , it can be unlocked by a second injury in nerves elsewhere in the b... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2016 | An evolutionarily conserved mechanism for cAMP elicited axonal regeneration involves direct activation of the dual leucine zipper kinase DLK |
Dyslexia is a prevalent reading disability whose underlying mechanisms are still disputed . We studied the neural mechanisms underlying dyslexia using a simple frequency-discrimination task . Though participants were asked to compare the two tones in each trial , implicit memory of previous trials affected their respon... | The term “dyslexia” comes from the Greek for “difficulty with words” . People with dyslexia struggle with reading and spelling: they may mix up letters within words and tend to read and write more slowly than others . However , not every symptom of dyslexia is related to literacy . Affected individuals also differ from... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | Dyslexics’ faster decay of implicit memory for sounds and words is manifested in their shorter neural adaptation |
Mitochondria move throughout neuronal dendrites and localize to sites of energy demand . The prevailing view of dendritic mitochondria as highly motile organelles whose distribution is continually adjusted by neuronal activity via Ca2+-dependent arrests is based on observations in cultured neurons exposed to artificial... | Inside the cells of animals and plants , compartments called mitochondria play several important roles including supplying chemical energy for cellular processes . The mitochondria inside nerve cells are produced in the main body of each cell , and must travel down a long nerve fiber called the axon and the branch-like... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2016 | Dendritic mitochondria reach stable positions during circuit development |
Bacteria , bacteriophages that prey upon them , and mobile genetic elements ( MGEs ) compete in dynamic environments , evolving strategies to sense the milieu . The first discovered environmental sensing by phages , lysis inhibition , has only been characterized and studied in the limited context of T-even coliphages .... | Bacteriophages , or phages for short , are viruses that infect bacteria , take over the molecular machinery inside the bacterial cells and use it to make more copies of themselves . The bacteriophages then break open , or “lyse” , the bacterial cell , releasing the viral copies into the environment , ready to infect mo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2020 | Dominant Vibrio cholerae phage exhibits lysis inhibition sensitive to disruption by a defensive phage satellite |
Construction of motile cilia/flagella requires cytoplasmic preassembly of axonemal dyneins before transport into cilia . Axonemal dyneins have various subtypes , but the roles of each dynein subtype and their assembly processes remain elusive in vertebrates . The PIH protein family , consisting of four members , has be... | Many cells have long , thin structures called cilia on their surface , some types of which can beat back and forth . This beating motion has many roles; for example , cilia on the cells that line the lungs help to sweep out debris , and the tails of sperm beat to move them forward . A structure called the axonemal dyne... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2018 | Systematic studies of all PIH proteins in zebrafish reveal their distinct roles in axonemal dynein assembly |
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