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def main():
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parser = argparse.ArgumentParser(description="Update gff intervals given a RagTag AGP file", usage="ragtag.py updategff [-c] <genes.gff> <ragtag.agp>")
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parser.add_argument("gff", nargs='?', default="", metavar="<genes.gff>", type=str, help="gff file")
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parser.add_argument("agp", nargs='?', default="", metavar="<ragtag.*.agp>", type=str, help="agp file")
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parser.add_argument("-c", action="store_true", default=False, help="update for misassembly correction (ragtag.correction.agp)")
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args = parser.parse_args()
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if not args.gff or not args.agp:
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parser.print_help()
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sys.exit()
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log("VERSION", "RagTag " + get_ragtag_version())
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log("CMD", "ragtag.py updategff " + " ".join(sys.argv[1:]))
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gff_file = os.path.abspath(args.gff)
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agp_file = os.path.abspath(args.agp)
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is_sub = args.c
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if is_sub:
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sub_update(gff_file, agp_file)
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else:
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sup_update(gff_file, agp_file)
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log("INFO", "Goodbye")
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if __name__ == "__main__":
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main()
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# <FILESEP>
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import requests, sys, argparse, validators, os, tldextract
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from colorama import init, Fore, Style
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from pyfiglet import Figlet
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# INITIALISE COLORAMA
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init()
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# DISPLAY BANNER -- START
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custom_fig = Figlet(font='slant')
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print(Fore.BLUE + Style.BRIGHT + custom_fig.renderText('-------------') + Style.RESET_ALL)
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print(Fore.BLUE + Style.BRIGHT + custom_fig.renderText('403bypasser') + Style.RESET_ALL)
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print(Fore.GREEN + Style.BRIGHT + "____________________ Yunus Emre SERT ____________________\n")
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print(Fore.LIGHTMAGENTA_EX + Style.BRIGHT + "-----> Twitter : https://twitter.com/yunem_se\n")
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print(Fore.MAGENTA + Style.BRIGHT + "-----> GitHub : https://github.com/yunemse48\n")
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print(Fore.MAGENTA + Style.BRIGHT + "-----> LinkedIn : https://www.linkedin.com/in/yunus-emre-sert-9102a9135/\n")
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print(Fore.BLUE + Style.BRIGHT + custom_fig.renderText('-------------') + Style.RESET_ALL)
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# DISPLAY BANNER -- END
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# HANDLE ARGUMENTS -- START
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parser = argparse.ArgumentParser()
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parser.add_argument("-u", "--url", type=str, help="single URL to scan, ex: http://example.com")
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parser.add_argument("-U", "--urllist", type=str, help="path to list of URLs, ex: urllist.txt")
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parser.add_argument("-d", "--dir", type=str, help="Single directory to scan, ex: /admin", nargs="?", const="/")
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parser.add_argument("-D", "--dirlist", type=str, help="path to list of directories, ex: dirlist.txt")
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args = parser.parse_args()
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# HANDLE ARGUMENTS -- END
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class Arguments():
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def __init__(self, url, urllist, dir, dirlist):
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self.url = url
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self.urllist = urllist
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self.dir = dir
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self.dirlist = dirlist
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self.urls = []
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self.dirs = []
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self.checkURL()
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self.checkDir()
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def return_urls(self):
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return self.urls
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def return_dirs(self):
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return self.dirs
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def checkURL(self):
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if self.url:
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if not validators.url(self.url):
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print("You must specify a valid URL for -u (--url) argument! Exitting...\n")
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sys.exit
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if self.url.endswith("/"):
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self.url = self.url.rstrip("/")
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self.urls.append(self.url)
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elif self.urllist:
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if not os.path.exists(self.urllist):
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print("The specified path to URL list does not exist! Exitting...\n")
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sys.exit()
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with open(self.urllist, 'r') as file:
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temp = file.readlines()
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for x in temp:
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