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# -*- coding: utf-8 -*-
u"""Hellweg execution template.
:copyright: Copyright (c) 2017 RadiaSoft LLC. All Rights Reserved.
:license: http://www.apache.org/licenses/LICENSE-2.0.html
"""
from __future__ import absolute_import, division, print_function
from pykern import pkio
from pykern.pkcollections import PKDict
fro... | radiasoft/sirepo | sirepo/template/hellweg.py | Python | apache-2.0 | 14,494 | [
"Gaussian"
] | 1e3105e8cbae2b3332ae03c3c193cc7031d8be67564660b6fec68db2c7d6d0de |
#!/usr/bin/python3
# Copyright 2016-2018 Olli Helin
# This file is part of GainCMS, a free software released under the terms of the
# GNU General Public License v3: http://www.gnu.org/licenses/gpl-3.0.en.html
# Parse GainCMS site statistics.
from ipaddress import ip_address # Requires Python 3.3 or newer.
from os im... | ohel/gaincms | parse_stats.py | Python | gpl-3.0 | 10,809 | [
"VisIt"
] | 0c41e77a15eaaadc2f6d19a0526b135e838913f10c8b8b9652297cefedcca89d |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the Account Settings page.
"""
from unittest import skip
from bok_choy.web_app_test import WebAppTest
from ...pages.lms.account_settings import AccountSettingsPage
from ...pages.lms.auto_auth import AutoAuthPage
from ...pages.lms.dashboard import DashboardPage
from ..... | DefyVentures/edx-platform | common/test/acceptance/tests/lms/test_account_settings.py | Python | agpl-3.0 | 16,119 | [
"VisIt"
] | 2d63fcd612f3cc5b2ce03fd8070e303508444ac162a297efebb6b13cb5fa33af |
import collections
from supriya import CalculationRate
from supriya.synthdefs import PureUGen, UGen
class COsc(PureUGen):
"""
A chorusing wavetable oscillator.
::
>>> cosc = supriya.ugens.COsc.ar(
... beats=0.5,
... buffer_id=23,
... frequency=440,
..... | josiah-wolf-oberholtzer/supriya | supriya/ugens/osc.py | Python | mit | 9,838 | [
"Gaussian"
] | 8b5b7f452553ee1f820c22b56b0e7730d66a16c05947bc7f262843e299b17c02 |
# -*- coding: utf-8 -*-
# Copyright (c) 2015, Alex Grigorevskiy
# Licensed under the BSD 3-clause license (see LICENSE.txt)
"""
The standard periodic kernel which mentioned in:
[1] Gaussian Processes for Machine Learning, C. E. Rasmussen, C. K. I. Williams.
The MIT Press, 2005.
[2] Introduction to Gaussian processes... | dhhjx880713/GPy | GPy/kern/src/standard_periodic.py | Python | bsd-3-clause | 6,792 | [
"Gaussian"
] | e68a37b63d8031a3a9d81ccc883ecf9ccff43df67e231cd5cf9e7e85e3253cbf |
# coding=utf-8
"""
InaSAFE Disaster risk assessment tool developed by AusAid and World Bank
- **Functionality related to shake data files.**
Contact : ole.moller.nielsen@gmail.com
.. note:: This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License a... | opengeogroep/inasafe | realtime/make_flood_forecast.py | Python | gpl-3.0 | 7,287 | [
"NetCDF"
] | 226f096a0351d229494ec58b96148cab2e1363523d7fc6e7303e3fffcab4ca20 |
# encoding: utf-8
"""OptimizationDatabase - target values for parameter optimization.
This file contains a database of expermental and DFT-derived values
useful for optimizing classical potentials.
There are two dictionaries, elements and alloys, defining data for
pure elements and for alloys, respectively. The ke... | auag92/n2dm | Asap-3.8.4/Python/asap3/Tools/OptimizationDatabase.py | Python | mit | 4,893 | [
"ASE",
"GPAW"
] | 41c6e02bc1041a4aa83861b2fdb81db8bbdd4df5d7bd3dd1ab58f54197ca6bd2 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2007, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.AndreaConsadori.Raytalk/ZenPacks/AndreaConsadori/Raytalk/modeler/plugins/RaytalkDeviceMap.py | Python | gpl-2.0 | 1,343 | [
"VisIt"
] | f96dc1843d5b86079dc1d9d0e4b43e53970e076260d9f45691d4434e5692ab5e |
class Params:
"""
Class for reading, storing and some limited pre/post-processing of parameters.
"""
def __init__(self, input_file):
"""
Initialise parameters from input file, with defaults of some values.
:param input_file: name of input json file
"""
import g... | EWannerberg/AutomaticHeuristicGeneration | ModelPredictiveControl/params.py | Python | mit | 10,729 | [
"Gaussian"
] | 15ea9538bd02bf27273b0aa192a7c3e271f8c6f370ad5d3fab7441181b7965df |
r"""
The transient advection-diffusion equation with a given divergence-free
advection velocity.
Find :math:`u` such that:
.. math::
\int_{\Omega} s \pdiff{u}{t}
+ \int_{\Omega} s \nabla \cdot \left(\ul{v} u \right)
+ \int_{\Omega} D \nabla s \cdot \nabla u
= 0
\;, \quad \forall s \;.
View the re... | RexFuzzle/sfepy | examples/diffusion/time_advection_diffusion.py | Python | bsd-3-clause | 1,681 | [
"VTK"
] | ad897a7566a3df558fdb56995bfe58f6095c68ddcc6f6332b159955486fbbe85 |
# coding=utf-8
# Copyright © 2018 Computational Molecular Biology Group,
# Freie Universität Berlin (GER)
#
# Redistribution and use in source and binary forms, with or
# without modification, are permitted provided that the
# following conditions are met:
# 1. Redistributions of source code must ret... | readdy/readdy | wrappers/python/src/python/readdy/api/trajectory.py | Python | bsd-3-clause | 26,506 | [
"VMD"
] | 658dbfbd8af3a32b6ebabd794351a5e8df1f10bf0aa13c00111c152ca75e9b05 |
# ========================== Start Copyright Notice ========================== #
# #
# Copyright 2014 F.D.I.S. #
# This file is part of Kinetic Gunner: Gunner of Angst ... | CertainlyUncertain/Kinetic-Gunner-Gunner-of-Angst | entityMgr.py | Python | gpl-3.0 | 6,187 | [
"VisIt"
] | 02b5d7a4f7a654976725c7b61d0c89f7aa2b4b386b39128a2ea5ec1e3deab122 |
from draughtcraft.tests import TestApp
from draughtcraft import model
from datetime import datetime, timedelta
from urllib import urlencode
def R(kwargs):
recipe = model.Recipe(**kwargs)
if 'author' not in kwargs:
recipe.author = model.User.query.first(
) or model.User(email='ryan@example.com'... | ryanpetrello/draughtcraft | draughtcraft/tests/controllers/recipes/test_browse.py | Python | bsd-3-clause | 22,156 | [
"Amber"
] | e125b45d37aa4f318fb74184a2f63d271fd8455767deed6886293c1e3e3b2660 |
__author__ = 'stephen'
# ===============================================================================
# GLOBAL IMPORTS:
import os,sys
import numpy as np
import argparse
# ===============================================================================
# LOCAL IMPORTS:
HK_DataMiner_Path = os.path.relpath(os.pardir)
#... | stephenliu1989/HK_DataMiner | hkdataminer/scripts/test_kcenters_bak.py | Python | apache-2.0 | 5,089 | [
"MDTraj"
] | a25562bedac5d5f3a4f3331548e88e968a8e1c14b6881ec3f3ca5932d67fbdf2 |
#
# QAPI types generator
#
# Copyright IBM, Corp. 2011
# Copyright (c) 2013-2015 Red Hat Inc.
#
# Authors:
# Anthony Liguori <aliguori@us.ibm.com>
# Markus Armbruster <armbru@redhat.com>
#
# This work is licensed under the terms of the GNU GPL, version 2.
# See the COPYING file in the top-level directory.
from qapi ... | lunixbochs/qemu | scripts/qapi-types.py | Python | gpl-2.0 | 8,335 | [
"VisIt"
] | 83cf3641658b0cbdbe134dbdddbd70f2339206b9a1601a693349b3aab8866996 |
# Mouse reviewer for Orca
#
# Copyright 2008 Eitan Isaacson
# Copyright 2016 Igalia, S.L.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at you... | GNOME/orca | src/orca/mouse_review.py | Python | lgpl-2.1 | 22,087 | [
"ORCA"
] | 2ee3de55f75c2b28d610dbee0cae57ff1eae1649a9717ee78b945f5050deb65f |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
This example has two parts. The first part applies oscillated electric field
by modifying the 1-electron Hamiltonian. The second part generate input
script for Jmol to plot the HOMOs. Running jmol xxxx.spt can output 50
image files of HOMOs u... | gkc1000/pyscf | examples/scf/40-apply_electric_field.py | Python | apache-2.0 | 2,698 | [
"Jmol",
"PySCF"
] | 732bacc51762f1502a8d88e9aa6ef31acc64cf4c2f05f555705b0a6344245349 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
########################################################################
# Solves problem 47 from projectEuler.net.
# Finds the first 4 integeres which have 4 distinct prime factors.
# Copyright (C) 2010 Santiago Alessandri
#
# This program is free software: you ... | sanSS/programming-contests | project-euler/problem047.py | Python | gpl-3.0 | 3,314 | [
"VisIt"
] | 0b7342d67f3b4852ecdd7de33c31aab40450ce81be65388682f516f41d990c47 |
"""Computation of Kullback-Leibler divergence"""
from math import log, sqrt, exp
import numpy as np
eps = 1e-15
def klBern(x, y):
"""Kullback-Leibler divergence for Bernoulli distributions."""
x = min(max(x, eps), 1-eps)
y = min(max(y, eps), 1-eps)
return x*log(x/y) + (1-x)*log((1-x)/(1-y))
def klPo... | alasdairtran/digbeta | python/digbeta/kullback.py | Python | gpl-3.0 | 1,623 | [
"Gaussian"
] | 6eb26da93bc81054d4da84bc3f1153452d8cbe8ccbf54c72250ab3c039fe5b68 |
"""Analyze quasi-optical systems using Gaussian beam analysis."""
import gaussopt.component
import gaussopt.frequency
import gaussopt.system
import gaussopt.util
from gaussopt.frequency import *
from gaussopt.component import *
from gaussopt.system import System
__author__ = "John Garrett"
__version__ = "0.1"
| garrettj403/GaussOpt | gaussopt/__init__.py | Python | mit | 314 | [
"Gaussian"
] | fbf4b80129324b6f1349efdfbf19cc59bf8052c11152ed7a18ccb6775262a5cc |
# 03.10.2007, c
from sfepy import data_dir
filename_mesh = data_dir + '/meshes/2d/special/circle_in_square.mesh'
# Whole domain $Y$.
region_1000 = {
'name' : 'Y',
'select' : 'all',
}
# Domain $Y_1$.
region_1 = {
'name' : 'Y1',
'select' : 'elements of group 1',
}
# Domain $Y_2$.
region_2 = {
'nam... | olivierverdier/sfepy | tests/test_lcbc_2d.py | Python | bsd-3-clause | 2,462 | [
"VTK"
] | a7ec454d1186f71ef635a7f6f300fe5de02cb061989d01b11973341bdc934c6f |
# -----------------------------------------------------------------------------
# User configuration
# -----------------------------------------------------------------------------
dataset_destination_path = '/Users/seb/Desktop/wavelet_%s'
# ----------------------------------------------------------------------------... | Kitware/arctic-viewer | scripts/examples/vtk/samples/syntax-evolution-volume_v4.py | Python | bsd-3-clause | 3,011 | [
"VTK"
] | 9d6f69c257cbcfc2b80de19538912dd16fa4629d3f34958f8e2d7cb191f59cf7 |
#!/usr/bin/env python
import sys, argparse, os
from .wrappers import ancestral_reconstruction, mugration, scan_homoplasies,\
timetree, estimate_clock_model, arg_time_trees
from . import version
py2 = sys.version_info.major==2
def set_default_subparser(self, name, args=None, positional_args=0):
... | neherlab/treetime | treetime/argument_parser.py | Python | mit | 18,570 | [
"Gaussian"
] | 14377ba909c4efe938015628243fdecbe778b0e3fc9ec7c459f410c3597e658f |
from typing import (
AbstractSet, Any, Callable, Dict, Iterable, List, Mapping, MutableMapping,
Optional, Sequence, Set, Tuple, Union, cast
)
from typing_extensions import TypedDict
import django.db.utils
from django.db.models import Count
from django.contrib.contenttypes.models import ContentType
from django.... | tommyip/zulip | zerver/lib/actions.py | Python | apache-2.0 | 249,948 | [
"Octopus"
] | a4f39efdf28eaaf48824967d5e2e433c33c67f3770d5c53be38d1551b5db238b |
# -*- coding: utf-8 -*-
from __future__ import print_function
import json
import logging
import os
import re
from gtd_model import Item, GtdItem, NextAction, Project, Tag, Plane, Recipient
from common_model import RawValueItem
from visitors import Visitor
cb = lambda response: print (u'STATUS: {0}({1}). From cache ... | Adnn/GTD_Tasks | tasks_datamodel.py | Python | mit | 13,593 | [
"VisIt"
] | f8bc791d8533985f7cb0b8305380a6315ae8563a616011b6b9e03ab2c43daa07 |
"""diffusion_using_Gillespie.py:
In this snippet, we show how to setup diffusion using Gillespie scheme.
"""
__author__ = "Dilawar Singh"
__copyright__ = "Copyright 2016, Dilawar Singh"
__credits__ = ["NCBS Bangalore"]
__license__ = "GNU GPL"
__version__ = "1.0.0"
__m... | BhallaLab/moose | moose-examples/snippets/diffusion_using_Gillespie.py | Python | gpl-3.0 | 2,889 | [
"MOOSE"
] | a7864c771901620d8eeb4653151070c27e30802ae57e0a8d25cffbffa87680be |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | psci2195/espresso-ffans | testsuite/python/langevin_thermostat.py | Python | gpl-3.0 | 21,767 | [
"ESPResSo"
] | f337fa00230f4fcc22796e7060e0fcc21d88663754d5a16340b360326ccb215d |
r"""Wildman-Crippen LogP/MR descriptor.
References
* :doi:`10.1021/ci990307l`
"""
from rdkit.Chem import Crippen
from ._base import Descriptor
__all__ = ("SLogP", "SMR")
class WildmanCrippenBase(Descriptor):
__slots__ = ()
@classmethod
def preset(cls, version):
yield cls()
def __str_... | mordred-descriptor/mordred | mordred/SLogP.py | Python | bsd-3-clause | 990 | [
"RDKit"
] | 5e8c34de665f60a6cff040dc24db9cebf8b32c65579d9e89d49e1154d74cdcf7 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
from os.path import getmtime, exists
import time
import types
import __builtin__
from Cheetah.Version import MinCompatibleVersion as RequiredCheetahVersion
from Cheetah.Version import MinComp... | johm/infoshopkeeper | inventoryserver/TransactionsTemplate.py | Python | gpl-2.0 | 9,217 | [
"VisIt"
] | 4ce14761774100c5d69e401cb0d7b02c8bbc8438d07ba3e74aa7cd880491e38f |
#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU ... | tfmoraes/invesalius3 | invesalius/gui/task_navigator.py | Python | gpl-2.0 | 98,599 | [
"VTK"
] | 471fe1859cfe4787c38b9fe445ea347a2394c72bbb8e49f90d5b45686198f45b |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2001-2007 Donald N. Allingham
# Copyright (C) 2008 Lukasz Rymarczyk
# Copyright (C) 2008 Raphael Ackermann
# Copyright (C) 2008-2011 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011-2013 Paul Franklin
#
# This pro... | Nick-Hall/gramps | gramps/cli/plug/__init__.py | Python | gpl-2.0 | 35,360 | [
"Brian"
] | 2d430abe7ea9fa2d9367d1cbc2b42a80b6f905c8de688c9c38f64b51662c990b |
# Import packages that will be used
# GUI generation Packages
import wx
from wx.lib.buttons import GenBitmapButton,GenBitmapToggleButton
#Operational Packages
import SysUpdate
import subprocess
import os
import getPlugins as gpi
import listControl as lc
#BLAST specific packages
from Bio.Blast import NCBIXML
import BLAS... | fxb22/BioGUI | plugins/Tools/BLASTgui.py | Python | gpl-2.0 | 20,516 | [
"BLAST"
] | 3bb252601dc42a16caf155b9d9b8faa2666d8aa3ec32eeb5edcc652a848d3d61 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
###########################################################################
# #
# ESPResSo++ Python script for tabulated GROMACS simulation #
# ... | BackupTheBerlios/espressopp | testsuite/pi_water/water.py | Python | gpl-3.0 | 7,315 | [
"ESPResSo",
"Gromacs",
"VMD"
] | 5f26017b5f1c011dab77480efba1be0acd11b6d30f24ead9e4df22bba72b9ec2 |
###########################################################################
#
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/l... | google/starthinker | dags/dv360_data_warehouse_dag.py | Python | apache-2.0 | 17,140 | [
"VisIt"
] | 81b4e6f6658a4c5b093919ad4c2dc38c6c5983d9085d668e76d59458387f4c18 |
"""
vtkImageImportFromArray: a NumPy front-end to vtkImageImport
Load a Numeric Python array into a VTK image.
To use this class, you must have the LLNL Numeric Python distribution
(http://numpy.sf.net)
Methods:
GetOutput() -- connect to VTK image pipeline
SetArray() -- set the array to load in
Convert python ... | jeffbaumes/jeffbaumes-vtk | Wrapping/Python/vtk/util/vtkImageImportFromArray.py | Python | bsd-3-clause | 4,414 | [
"VTK"
] | 1f499938a69259a345ca3bbaef556300d84c081458a0f35258eb91ca7e1e6318 |
import ast
from .base import BaseAnalyzer, Result
DESCRIPTION = """
As of Django 1.4, ``{name}`` function has been deprecated and will be removed
in Django 1.5. Use ``{propose}`` instead.
"""
class ContextProcessorsVisitor(ast.NodeVisitor):
def __init__(self):
self.found = []
deprecated_items = {
... | alfredhq/djlint | djlint/analyzers/context_processors.py | Python | isc | 1,617 | [
"VisIt"
] | e6d1cefd63f3d08370484aca8b9cf50244cb666a06a2886fd886f67287da2e87 |
"""
Test functions for multivariate normal distributions.
"""
from __future__ import division, print_function, absolute_import
from numpy.testing import (
assert_allclose,
assert_almost_equal,
assert_array_almost_equal,
assert_equal,
assert_raises,
run_module_suite,
)
import numpy
import nump... | chaluemwut/fbserver | venv/lib/python2.7/site-packages/scipy/stats/tests/test_multivariate.py | Python | apache-2.0 | 14,711 | [
"Gaussian"
] | de48970225b2b8fe78f7e3fa276aeaed360b675e6a23678461adaa30668af077 |
#
# Copyright (C) 2007, 2015, 2016, 2017, 2018, 2019, 2020, 2021
# Smithsonian Astrophysical Observatory
#
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License,... | anetasie/sherpa | sherpa/astro/xspec/tests/test_xspec.py | Python | gpl-3.0 | 22,671 | [
"Gaussian"
] | 4ac5b273979268abd951e1f5d98fd23978d257c721463ad742cec9dccfc7b998 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
Tests that relate to fitting models with quantity parameters
"""
# pylint: disable=invalid-name, no-member
import numpy as np
import pytest
from astropy import units as u
from astropy.units import UnitsError
from astropy.tests.helper import assert_qua... | aleksandr-bakanov/astropy | astropy/modeling/tests/test_quantities_fitting.py | Python | bsd-3-clause | 9,224 | [
"Gaussian"
] | 503594b085221b154bf7fdec601eb1b3e37c4836943fcb91d5727d95b711091a |
from engfmt import Quantity, set_preferences
class Case:
def __init__(self, name, text, raw, formatted, prefs=None):
self.name = name
self.text = text
self.raw = raw
self.formatted = formatted
self.prefs = prefs
test_cases = [
Case('grange', '0', ('0', ''), '0'),
Ca... | KenKundert/engfmt | test_quantity.py | Python | gpl-3.0 | 12,862 | [
"Firefly"
] | 974f9e0abf57824003afb867b7b5df3a4bf22fba3f91bc80a61de8847139dbbb |
"""
Utility functions and classes
Run this module as a main program, or run it through `python -m doctest`,
to exercise embedded tests.
"""
from __future__ import annotations # PEP 563 (allows annotation forward refs)
from abc import ABC, abstractmethod
import re
import os
import contextlib
import markdown2
import s... | databricks-edu/build-tooling | bdc/bdcutil.py | Python | apache-2.0 | 53,106 | [
"VisIt"
] | f2297237bb34539d821bcd6dee68906c28ab709349d9484c55bbde6f13a7fc85 |
'''** **********************************************************************
*
* @file
*
* @author (c) Brian Lynch <brianrlynch85@gmail.com>
* @date August, 2016
* @version 0.01
*
* @brief Test implementation functions in python (called from C)
*
* @todo Clean up
*
* This file is subject to the t... | brianrlynch85/CToPython | py_functions.py | Python | apache-2.0 | 3,156 | [
"Brian"
] | e5c3e660dcfe5a099e8af509dc9713a7300b6101c0787e44afe8e1a390d679e2 |
import time,calendar
import string
import numpy
import scipy
import sys, os, inspect
from gittle import Gittle
import tables
import pylab
import glob
import matplotlib as mpl
import matplotlib.pylab as plt
import binascii
import math
from scipy.signal import convolve
from scipy.interpolate import griddata
from scipy.op... | bmazin/ARCONS-pipeline | util/utils.py | Python | gpl-2.0 | 52,727 | [
"Gaussian"
] | 21c6dc5be765aa96ec7d0124ce53cd454eeb0d32f07ef39f1d271b02d4bbc8cf |
"""
Parser function parse() to parse the .wout output file of Wannier90.
"""
import inspect
import re
from collections import defaultdict
from . import show_output
# Match the lines describing the nearest-neighbour Shells
# Groups:
# 0: Shell Index
# 1: distance (ang^-1)
# 2: multiplicity
near_neigh_re = re.compile("... | greschd/wannier90 | test-suite/tools/parsers/parse_wout.py | Python | gpl-2.0 | 4,819 | [
"Wannier90"
] | 78d188eeea18725227529626f374d6ebccef185c65e4984321ad16c45ac2731b |
"""
Test of the classical LM model for language modelling
"""
from groundhog.datasets import LMIterator
from groundhog.trainer.SGD_adadelta import SGD
from groundhog.mainLoop import MainLoop
from groundhog.layers import MultiLayer, \
RecurrentMultiLayer, \
RecurrentMultiLayerInp, \
RecurrentMultiLa... | neozhangthe1/coverage_model | tutorials/DT_RNN_Tut_Adadelta.py | Python | bsd-3-clause | 14,280 | [
"Gaussian"
] | 7274a488b88f4beb27af3c204a4c3244917b96348f102d4bb1881afa0065fcb7 |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-today OpenERP SA (<http://www.openerp.com>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms o... | jgmanzanas/CMNT_004_15 | project-addons/external_salesperson_visit/partner_visit.py | Python | agpl-3.0 | 7,393 | [
"VisIt"
] | b64195bb17eb0d018d859f4113b2fe5c818abbf468a874a8390f91974de657f9 |
# sql/expression.py
# Copyright (C) 2005-2012 the SQLAlchemy authors and contributors <see AUTHORS file>
#
# This module is part of SQLAlchemy and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""Defines the base components of SQL expression trees.
All components are derived ... | nabsboss/CouchPotatoServer | libs/sqlalchemy/sql/expression.py | Python | gpl-3.0 | 192,463 | [
"VisIt"
] | 7101b0f5463e6490ebb33a1383491b08b1fc192bc6ed88b359a415d9e3c6c76a |
from pattern import Pattern
import numpy as np
import itertools
import time
from random import randint
class EqPatternColourful(Pattern):
def __init__(self, meter_color=(255,100,50), background_color=(0,50,255), decay_time = 0.1):
self.register_param("meter_r", 0, 255, meter_color[0])
self.register... | TheGentlemanOctopus/thegentlemanoctopus | octopus_code/core/octopus/patterns/eqPatternColourful.py | Python | gpl-3.0 | 2,517 | [
"Octopus"
] | 8cdc7ce0e74098a946b09a7171f705889d5d6c227f6fd4a7d843e6ceb1fcf8f3 |
#!/usr/bin/env python
#encoding=utf8
#Copyright [2014] [Wei Zhang]
#Licensed under the Apache License, Version 2.0 (the "License");
#you may not use this file except in compliance with the License.
#You may obtain a copy of the License at
#http://www.apache.org/licenses/LICENSE-2.0
#Unless required by applicable law ... | anthonylife/TaobaoCompetition2014 | src/MTL-LR/multiTaskLR.py | Python | gpl-2.0 | 7,922 | [
"Gaussian"
] | 7437626b41f11a3c772328d93068634127fab5c56c545d0aea888ffcd9d53907 |
#!/usr/bin/env python
#
# Wrapper script for starting the biopet-sampleconfig JAR package
#
# This script is written for use with the Conda package manager and is copied
# from the peptide-shaker wrapper. Only the parameters are changed.
# (https://github.com/bioconda/bioconda-recipes/blob/master/recipes/peptide-shaker... | CGATOxford/bioconda-recipes | recipes/biopet-sampleconfig/biopet-sampleconfig.py | Python | mit | 3,375 | [
"Bioconda"
] | 406b59cf4cc028dc5d3f9501fa7f31817e231f1dbdfde2b0a6aece9a25c5e086 |
../../../../share/pyshared/orca/pronunciation_dict.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/pronunciation_dict.py | Python | gpl-3.0 | 53 | [
"ORCA"
] | bdb9fa25b4bc9bdacb5dbca1ef0319c84b14b46ac38cb1ad44bb0290b5c087d8 |
# shamelessly copied from pliExpertInfo (Vali, Mirakels, Littlesat)
from enigma import iServiceInformation, iPlayableService
from Components.Converter.Converter import Converter
from Components.Element import cached
from Components.config import config
from Tools.Transponder import ConvertToHumanReadable
from Tools.Ge... | popazerty/SDG-gui | lib/python/Components/Converter/TranspBAExtraInfo.py | Python | gpl-2.0 | 24,131 | [
"Galaxy"
] | ce325c5a581b337980a34cf774ce4fd02c891d80ee3a4811bc039d406f5b5663 |
"""Hillmaker"""
# Copyright 2015 Mark Isken
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed... | misken/hillmaker | hillmaker/hills.py | Python | apache-2.0 | 8,534 | [
"VisIt"
] | 632a4347c4d78a9d7e7674cf108b152090d8eeaaa15170feccf5bda967a0e394 |
r"""protocols is a module that contains a set of VTK Web related
protocols that can be combined together to provide a flexible way to define
very specific web application.
"""
from time import time
import os, sys, logging, types, inspect, traceback, logging, re
from vtkWebCorePython import vtkWebApplication, ... | timkrentz/SunTracker | IMU/VTK-6.2.0/Web/Python/vtk/web/protocols.py | Python | mit | 11,069 | [
"VTK"
] | dc89bb8a0bc4d16251d40e388788db60c08bdfc14fbeec429974c1f523aab923 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import gzip
import json
import os
import unittest
import warnings
import xml.etree.ElementTree as ET
from pathlib import Path
from shutil import copyfile, copyfileobj
import numpy as np
import pytest
from monty.tempfile impo... | materialsproject/pymatgen | pymatgen/io/vasp/tests/test_outputs.py | Python | mit | 92,557 | [
"VASP",
"Wannier90",
"pymatgen"
] | afedc341de133920143a8121b90dab731582c810f76b7896d44b09ac7743b1a3 |
# coding: utf8
import os
import array
import cffi
_root = os.path.join(os.path.dirname(__file__))
_src = os.path.join(_root, 'src')
_moz2d = os.path.join(_root, 'moz2d')
with open(os.path.join(_src, 'azureblur.h')) as fd:
_declarations = '''
struct AlphaBoxBlur; // Opaque
typedef struct AlphaBoxB... | SimonSapin/azureblur | azureblur/__init__.py | Python | mpl-2.0 | 9,932 | [
"Gaussian"
] | 70c83a1f0d8f58cc3bf0b2ba32a29a4f6174d7d8700fd651c2bb3face55a18a4 |
#!/usr/bin/python
"""
Brief: Generates a script for doing the preprocessing steps for a single obsHistID.
Authors: Nicole Silvestri, U. Washington, nms@astro.washington.edu
Jeffrey P. Gardner, U. Washington, Google, gardnerj@phys.washington.edu
"""
from __future__ import with_statement
import os, re, sys... | lsst-sims/sims_phosim_pythoncontrol | SingleVisitScriptGenerator.py | Python | gpl-3.0 | 25,443 | [
"VisIt"
] | b7c103c74f25e40db2b1712c026e2b212d384e94100efb39160cc8dad06b52c3 |
"""setuptools.command.bdist_egg
Build .egg distributions"""
from distutils.errors import DistutilsSetupError
from distutils.dir_util import remove_tree, mkpath
from distutils import log
from types import CodeType
import sys
import os
import re
import textwrap
import marshal
import warnings
from setuptools.extern imp... | sserrot/champion_relationships | venv/Lib/site-packages/setuptools/command/bdist_egg.py | Python | mit | 18,543 | [
"VisIt"
] | 1956dfb1ed0439652d1fe91ba114a19f1abed9c0ea6bb56b076efb4f4fbbdde5 |
"""
Student Views
"""
import datetime
import json
import logging
import uuid
import warnings
from collections import defaultdict, namedtuple
from urlparse import parse_qs, urlsplit, urlunsplit
import django
import analytics
import edx_oauth2_provider
from django.conf import settings
from django.contrib import message... | hastexo/edx-platform | common/djangoapps/student/views.py | Python | agpl-3.0 | 129,655 | [
"VisIt"
] | c6ea39fdb17091d6799dcd9eaff9aa9085788ddb5da9328638778996c9d19c2c |
# -*- coding: utf-8 -*-
from nltk.sem.logic import *
import unicodedata
from nltk.internals import Counter
from .logic_parser import lexpr
_counter = Counter()
# Term t ::=
# x,y,z <IndividualVariableExpression>
# e <EventVariableExpression>
# f(t) <ApplicationExpression> where f ... | masashi-y/depccg | depccg/semantics/ccg2lambda/nltk2normal.py | Python | mit | 18,350 | [
"VisIt"
] | 45aba3fca2b0c8f5c9aa80dec81f95659cf5de4c7a9662255da200c8d0d1257d |
'''
Neuromuscular simulator in Python.
Copyright (C) 2018 Renato Naville Watanabe
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any late... | rnwatanabe/projectPR | InterneuronNoChannel.py | Python | gpl-3.0 | 7,657 | [
"NEURON"
] | 2dca11074413b8ed66f2ef29eb0a31837be284871376d0d90d18972c371c8d91 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
It generates the list of allowed candidate fusion genes. This list is hard coded
in here and it is manually curated from TCGA database (https://tcga-data.nci.nih.gov/tcga/ ).
Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
... | ndaniel/fusioncatcher | bin/generate_tcga.py | Python | gpl-3.0 | 281,266 | [
"VASP"
] | 96ddf414d0b69dfa298f95fa4188b35659fc568ac60e45d4a368ac229b1c9303 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/core/lib/searchedit.py | Python | gpl-2.0 | 9,181 | [
"Brian"
] | 8b8d605b84d26ed8d5b48ddd096ea65e9906bcd7c4401fc858dd75fe2934f419 |
#!/usr/bin/env python
""" update local cfg
"""
from DIRAC.Core.Base.Script import Script
Script.setUsageMessage(
"\n".join(
[
__doc__.split("\n")[1],
"Usage:",
" %s [options] ... DB ..." % Script.scriptName,
"Arguments:",
" setup: Name of the bu... | DIRACGrid/DIRAC | tests/Jenkins/dirac-cfg-update-services.py | Python | gpl-3.0 | 2,500 | [
"DIRAC"
] | d32611b959ff967c75c85e571c5a742737b3130a06ebc1d265e405e74f746766 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | eric-haibin-lin/mxnet | python/mxnet/symbol/random.py | Python | apache-2.0 | 18,404 | [
"Gaussian"
] | e3ef7b61b1f26f74f7e3f92da9425035b86e89fb364cfb705c4f2caf2a61b802 |
from datetime import datetime, timedelta
import pytz
from django.contrib.postgres.fields import JSONField
from django.core.mail import mail_admins
from django.db import models
from bestiary.models import Monster, Dungeon, Level, GameItem, Rune, RuneCraft, Artifact, ArtifactCraft
from herders.models import Summoner
... | PeteAndersen/swarfarm | data_log/models/log_models.py | Python | apache-2.0 | 47,582 | [
"CRYSTAL"
] | 00b895f8542bb4d1e4923bc109c64843fa6e45f8686883a5024dee4f1f0ae1f3 |
"""Contains the base classes for the EventManager and QueuedEvents"""
# events.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import logging
from collecti... | jabdoa2/mpf | mpf/system/events.py | Python | mit | 25,267 | [
"Brian"
] | dab092d9f299bc72f8c04ed3848813b18e886061c5d3f4ff46cec8de77f7be11 |
from __future__ import print_function
import sys
import time
import atexit
import pickle
import numpy as np
from ase.utils import devnull
def get_txt(txt, rank):
if hasattr(txt, 'write'):
# Note: User-supplied object might write to files from many ranks.
return txt
elif rank == 0:
if... | suttond/MODOI | ase/parallel.py | Python | lgpl-3.0 | 4,136 | [
"ASE",
"GPAW"
] | 4b0c37f30ff7c90aed1a63cdb6f9666dd90874bb5448fd8c33aefd83831970fb |
#!/usr/bin/env python2
###############################################################################
# ------------------------- Description ---------------------------------------
###############################################################################
# This script is designed to create a mask of stagnatio... | stevenjoelbrey/PMFutures | Python/find_era_interim_stagnation_days.py | Python | mit | 8,540 | [
"NetCDF"
] | b03a46815eeb14011fe68a7c02eff07f932b0ded125c03f4acdf148ebf3cd43e |
# Copyright 2018 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/bijectors/masked_autoregressive.py | Python | apache-2.0 | 57,939 | [
"Gaussian"
] | a544e5d42630cc1edbd7b6fa801509b51030e2e6b168cc7670ddac56ea5f1b1d |
"""
Process an input dataset into a format suitable for machine learning.
"""
import os
import tempfile
import zipfile
import time
import logging
import warnings
from typing import List, Optional, Tuple, Any, Sequence, Union, Iterator
import pandas as pd
import numpy as np
from deepchem.utils.typing import OneOrMany
... | peastman/deepchem | deepchem/data/data_loader.py | Python | mit | 48,363 | [
"RDKit"
] | 619a1c4a0c6b2594cb50ae2d84a33f0a11128942afc4b599b433304bbd02ad39 |
from .node import InputNode, Neuron
class Layer:
lid = 0
def __init__(self, size, with_bias_node=True):
self._lid = Layer.lid
Layer.lid += 1
self._size = size
Node = self._lid > 0 and Neuron or InputNode
self._nodes = [ Node() for i in range(size) ]
if with_bi... | nima/nimachines | py/nimachines/layer.py | Python | gpl-2.0 | 684 | [
"NEURON"
] | 0384fd2eeec969abc59899ae46952d4460a55b70fc1a5a11543054b06b2faa60 |
#!/usr/bin/env python
"""
ADS to BibDesk -- frictionless import of ADS publications into BibDesk
Copyright (C) 2014 Rui Pereira <rui.pereira@gmail.com> and
Jonathan Sick <jonathansick@mac.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Genera... | jonathansick/ads_bibdesk | adsbibdesk.py | Python | gpl-3.0 | 65,095 | [
"VisIt"
] | 555d397bc5464345103e71a1f520432b4de0e93eb84c27c638b1e2cb9917945d |
from __future__ import print_function
import os
import sys
here = os.path.dirname(os.path.abspath(os.path.dirname(__file__)))
sys.path = [here] + sys.path
import numpy as np
import theano
import mner.optimizer
import mner.util.util
import mner.solvers.solvers
import mner.solvers.constraints
import mner.solvers.sample... | jkaardal/mner | tests/tests.py | Python | mit | 14,334 | [
"Gaussian"
] | a329594aed437cdd3010df7d0caab9b64c1c3d4f8a0e14a9298394c7afd497ac |
import pysam, sys, os, collections
from jobTree.src.bioio import reverseComplement, fastaRead, fastqRead, cigarReadFromString, PairwiseAlignment, system, fastaWrite, fastqWrite, cigarRead, logger, nameValue, absSymPath
from cactus.bar import cactus_expectationMaximisation
from cactus.bar.cactus_expectationMaximisation ... | mitenjain/nanopore | nanopore/analyses/utils.py | Python | mit | 28,935 | [
"BWA",
"pysam"
] | 0dfd40977b45603e0c6db1fff7043fc21b0286aa400839fae68a5830d696fa73 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | AsimmHirani/ISpyPi | tensorflow/contrib/tensorflow-master/tensorflow/contrib/distributions/python/ops/normal.py | Python | apache-2.0 | 9,147 | [
"Gaussian"
] | e56c5d1e8e1768880d485e0f7785b197bf1651f119d8e965c0c581dac444a02a |
from distutils.core import setup
setup(
name = 'pyPheWAS',
packages = ['pyPheWAS'], # this must be the same as the name above
version = '4.0.4',
description = 'MASI Lab Port of PheWAS into Python',
author = 'MASI Lab',
author_email = 'bennett.landman@vanderbilt.edu',
url = 'https://github.com/MASILab/pyP... | BennettLandman/pyPheWAS | setup.py | Python | mit | 1,668 | [
"Biopython"
] | 61b9b8059f1e834ea7b871fab21998ed0cb0a5d6054a963c9d5ace89b5e3de4d |
# coding: utf-8
# ### Visualizing the first 1000 Defective Ids and first 1000 Non-Defective Ids using [IBM System G](http://systemg.research.ibm.com/) and their movements across the production lines to develop useful insights about the data.
#
# ## Import Node.csv and Edge.csv to system G visualizer for the respect... | vibhutiM/Production-Failures | scripts/graph-viz.py | Python | apache-2.0 | 2,512 | [
"VisIt"
] | 03c1952a324eb9cc2fad109065a1ae2e4a1413e92178b4d8529f3199999175df |
# -*- coding: utf-8 -*-
"""
Regression tests for the Test Client, especially the customized assertions.
"""
from __future__ import unicode_literals
import itertools
import os
from django.contrib.auth.models import User
from django.contrib.auth.signals import user_logged_in, user_logged_out
from django.core.urlresolve... | memtoko/django | tests/test_client_regress/tests.py | Python | bsd-3-clause | 65,927 | [
"VisIt"
] | 543baefdf13bfd023c1e467f051baaf144403a4c69481f7391c7483ccad76dcc |
#! /usr/bin/env python2
# -*- coding: utf-8 -*-
"""
- Author: Ludovic, Jean, Michel Jarno (La Ville Jarno en Ploërmel, Guillac, Lanouée) <ludovic.villejarno@gmail.com>
- Licence: MIT
Requirements
------------
- Python <https://www.python.org/> created in the early 1990s by Guido van Rossum
- pycrypto <https://pypi.... | ludojmj/treelud | server/server.py | Python | mit | 11,804 | [
"Brian"
] | 3a91d378a51ae5f72bf2b249777e2c2e0a85621a8d1a19119ea07a6e12917b5c |
#__docformat__ = "restructuredtext en"
# ******NOTICE***************
# optimize.py module by Travis E. Oliphant
#
# You may copy and use this module as you see fit with no
# guarantee implied provided you keep this notice in all copies.
# *****END NOTICE************
import numpy as np
from numpy import atleast_1d, eye... | JConwayAWT/PGSS14CC | lib/python/multimetallics/ase/optimize/bfgslinesearch.py | Python | gpl-2.0 | 6,716 | [
"ASE"
] | 8a7a309c0aa5a5b19a3a5793864f4325ab62c7dc137491e155fe16aa07730b0f |
#!/usr/bin/python
#Audio Tools, a module and set of tools for manipulating audio data
#Copyright (C) 2007-2012 Brian Langenberger
#This program is free software; you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation; either version 2... | Excito/audiotools | setup.py | Python | gpl-2.0 | 6,319 | [
"Brian"
] | 6789e3769c972c996c0e71636c76a056ba82187e83d69c5d99b4fd795383cadf |
r"""
==================================
Constants (:mod:`scipy.constants`)
==================================
.. currentmodule:: scipy.constants
Physical and mathematical constants and units.
Mathematical constants
======================
================ ===========================================================... | apbard/scipy | scipy/constants/__init__.py | Python | bsd-3-clause | 12,245 | [
"Avogadro"
] | 0bc622aace92f34b84700947214281c0dd8af4e5d39209db17919e7e23584ce9 |
""" TransformationAgent processes transformations found in the transformation database.
The following options can be set for the TransformationAgent.
.. literalinclude:: ../ConfigTemplate.cfg
:start-after: ##BEGIN TransformationAgent
:end-before: ##END
:dedent: 2
:caption: TransformationAgent options
"""
fro... | ic-hep/DIRAC | src/DIRAC/TransformationSystem/Agent/TransformationAgent.py | Python | gpl-3.0 | 33,101 | [
"DIRAC"
] | 8791e3f4c77cf0cf1b3d02099e2329b961f3ec83ce0fabab03d86baf41008d87 |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <codecell>
from __future__ import division
import pandas as pd
import numpy as np
import os
import sys
import gspread
from StringIO import StringIO
import csv
sys.path.append('/home/will/PySeqUtils/')
sys.path.append('/home/will/PatientPicker/')
os.chdir('/home/wil... | JudoWill/ResearchNotebooks | LTRgraphs.py | Python | mit | 7,904 | [
"VisIt"
] | 40d5f70592d5d62ec74a2913543d537b698fdc97f2ab1972e813c79873311e17 |
#!/usr/bin/env python
# * **************************************************************** **
#
# File: tokens.py
# Desc: Operation on token data structures
# Note:
#
# Author: Brian Danilko, Likeable Software (brian@likeablesoftware.com)
#
# Copyright 2006, 2014, 2016, 2017 Microbric Pty Ltd.
#
# This program is free... | Bdanilko/EdPy | src/lib/tokens.py | Python | gpl-2.0 | 34,076 | [
"Brian"
] | e3447ed28fb58d98d08fc6b197365ef1b86f2eae52f0ccce304d3606f8a1db87 |
#!/usr/bin/env python
'''
For the customized energy and gradients function (e.g. adding DFT-D3
correction), a fake pyscf method need to be created before passing to
berny_solver.
'''
import numpy as np
from pyscf import gto, scf
from pyscf.geomopt import berny_solver, geometric_solver, as_pyscf_method
mol = gto.M(at... | gkc1000/pyscf | examples/geomopt/02-as_pyscf_method.py | Python | apache-2.0 | 1,266 | [
"PySCF"
] | 6608f841cf5e3a3a73f1d7fb1619e025955f113ead36139708035dd829c45b0c |
# Copyright (C) 2003 CAMP
# Please see the accompanying LICENSE file for further information.
"""Atomic-centered localized functions."""
from math import pi, cos, sin
import numpy as np
from gpaw import debug
from gpaw.utilities import is_contiguous
from gpaw.mpi import run
import _gpaw
MASTER = 0
def create_l... | qsnake/gpaw | gpaw/localized_functions.py | Python | gpl-3.0 | 18,789 | [
"GPAW"
] | 59369df6f4f27a264340d713fdbb0f93163fe67acda23f54053f3f3326447b6d |
# -*- coding:utf-8 -*-
"""
Script for running multiple simulation with different parameter set.
Usage
-----
``python run_multip.py <N_PROC> <PARAMETERSETS_DIRECTORY>`` with ``N_RPOC`` the
number of processors to run the simulations on, and ``PARAMETERSETS_DIRECTORY``
the directory containing the parameter set files.
T... | neuro-lyon/multiglom-model | src/run_multip.py | Python | mit | 3,360 | [
"Brian"
] | 75f1906397aff36c8c4561aacf402c52be338247976842098a260ec8e9aed6c5 |
# -*- coding: utf-8 -*-
"""The option dialog use to adjust the setting of algorithm."""
__author__ = "Yuan Chang"
__copyright__ = "Copyright (C) 2016-2019"
__license__ = "AGPL"
__email__ = "pyslvs@gmail.com"
from typing import cast, List, Tuple, Dict, Union, Optional
from qtpy.QtCore import Slot, Qt
from qtpy.QtWidg... | KmolYuan/Pyslvs-PyQt5 | pyslvs_ui/synthesis/dimensional_synthesis/dialogs/options.py | Python | agpl-3.0 | 6,162 | [
"Firefly"
] | a7bc251ecc901d6672f44eab6ef01f6233617012fc243fe92fff615991697ca1 |
import os
import sys
import threading
import time
import webbrowser
import flask
import tornado
from tornado.httpserver import HTTPServer
from tornado.ioloop import IOLoop
from tornado.wsgi import WSGIContainer
_basedir = os.path.join("..", os.path.dirname(__file__))
app = flask.Flask(__name__, static_folder="/unuse... | ericmjl/bokeh | sphinx/docserver.py | Python | bsd-3-clause | 2,079 | [
"VisIt"
] | c196513455a2abc8cab44a44d25f83eb40e49c2f4e54780fa6291c7e070f209f |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | rangadi/beam | sdks/python/apache_beam/runners/direct/consumer_tracking_pipeline_visitor_test.py | Python | apache-2.0 | 4,457 | [
"VisIt"
] | eb876bb1f932f98bf077e7390289fd3603fc1ae9c6e34f685bb991820143fc92 |
import numpy as np
import logging
from collections import namedtuple
#from bfgs import lineSearch, BFGS
from pele.optimize import LBFGS
from mylbfgs_updatestep import mylbfgs_updatestep
__all__ = ["MYLBFGS"]
_logger = logging.getLogger("pele.optimize")
class MYLBFGS(LBFGS):
"""
minimize a function using the... | js850/pele | pele/optimize/_mylbfgs.py | Python | gpl-3.0 | 5,933 | [
"PyMOL"
] | 28f9d2468ff60cdc912ec7ac4b45812c456c4fdb880770d3d906b0ad085943fd |
#!/usr/bin/env python
# \author Bruno Combal, IOC-UNESCO
# \date December 2013
# many thanks to Mark Carson (ZMAW) for advising me on the computation and usage of control run with CMIP5 datasets.
# to run the script with the correct version of uvcdat:
# source /usr/local/uvcdat/1.4.0/bin/setup_runtime.sh
import cdm... | IOC-CODE/cmip5_projections | make_modelTrend.py | Python | gpl-2.0 | 12,257 | [
"NetCDF"
] | 2e76f84888618042ef3e074e6e125faa4c01a174c700facf271a0f96235fe459 |
"""
@file outputs.py
@author Yun-Pang Floetteroed
@author Daniel Krajzewicz
@author Michael Behrisch
@date 2007-12-25
@version $Id: outputs.py 22608 2017-01-17 06:28:54Z behrisch $
This script is for generating the outputs from the choosed traffic assignment.
SUMO, Simulation of Urban MObility; see http://su... | 702nADOS/sumo | tools/assign/outputs.py | Python | gpl-3.0 | 7,157 | [
"MOE"
] | 3e0584a357f9143f50079773736e8feaabfebf2fdfc88aa4c1fbc4ac90112666 |
#!/usr/bin/python
# coding: utf-8
# #################################################################################
# Copyright (C) 2014 Francesco Giovannini, Neurosys - INRIA CR Nancy - Grand Est
# Authors: Francesco Giovannini
# email: francesco.giovannini@inria.fr
# website: http://neurosys.loria.fr/
# Permission... | JoErNanO/brianmodel | setup.py | Python | gpl-3.0 | 1,471 | [
"Brian"
] | 64fae599b9db92e457e10e7d5f91d7fd08cc7520dd39064e0bd6835046f73d4e |
# (c) 2012, Michael DeHaan, <michael.dehaan@gmail.com>
# (c) 2017 Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# Make coding more python3-ish
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
DOCUMENTATION = '''
... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/plugins/callback/osx_say.py | Python | bsd-3-clause | 2,867 | [
"exciting"
] | b418afe4d9eabcf82da07852a3848dd3ad785eda04e5f5a876f52dc72540f418 |
#!/usr/bin/python2.4
# Copyright (c) 2006-2008 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""This is a simple HTTP server used for testing Chrome.
It supports several test URLs, as specified by the handlers in TestPa... | rwatson/chromium-capsicum | net/tools/testserver/testserver.py | Python | bsd-3-clause | 39,247 | [
"VisIt"
] | 660f626aaacd5c089284130d54a350c4959430e09c73cfba2655327836e48ccd |
"""Provides an interface the QCDB Server instance"""
import json
import os
import re
from collections import defaultdict
from typing import TYPE_CHECKING, Any, DefaultDict, Dict, List, Optional, Tuple, Union
import pandas as pd
import requests
from pydantic import ValidationError
from .collections import collection_... | psi4/DatenQM | qcfractal/interface/client.py | Python | bsd-3-clause | 48,103 | [
"Psi4",
"RDKit"
] | 67d2c927d0da1c93c6b5a763ccc5fc23b5049c991722014207071ae1423c0d71 |
#
# simpleconifg.py - representation of a simple configuration file (sh-like)
#
# Matt Wilson <msw@redhat.com>
# Jeremy Katz <katzj@redhat.com>
# Will Woods <wwoods@redhat.com>
# Brian C. Lane <bcl@redhat.com>
#
# Copyright 1999-2012 Red Hat, Inc.
#
# This software may be freely redistributed under the terms of the GNU... | cs2c-zhangchao/nkwin1.0-anaconda | pyanaconda/simpleconfig.py | Python | gpl-2.0 | 6,127 | [
"Brian"
] | fa0fc29337022f9073ff4bad269abf50867e5879c18676be3257b46f9db4a117 |
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