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#!/usr/bin/env python
# POC: Multiple VNC Clients Multiple Integer Overflow Vulnerabilities(UltraVNC and TightVNC), BID 33568
#Author: Andres Lopez Luksenberg <polakocai@gmail.com> (Visit: http://208.66.16.113/~andres/)
#
import socket
serversocket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
serversocket.bind(... | knightmare2600/d4rkc0de | exploits/090205.py | Python | gpl-2.0 | 847 | [
"VisIt"
] | ee4fc95781d5555e777203dd6d8110e53eb07ac2a46c4a04f7d1ce1780be7ae2 |
from django.contrib.auth.decorators import login_required
from django.http import HttpRequest, HttpResponse
from django.shortcuts import render
from core.utils import get_context
from .utils import BLASTNcbi
@login_required
def index(request: HttpRequest, voucher_code: str, gene_code: str) -> HttpResponse:
"""Ex... | carlosp420/VoSeq | blast_ncbi/views.py | Python | bsd-3-clause | 741 | [
"BLAST"
] | 94856313089a3e489929bccd2e074dd69ef718834f9f9f273fdd753aa78aeb30 |
""" Test class for Pilot Status Agent
"""
import pytest
from mock import MagicMock
# DIRAC Components
from DIRAC.WorkloadManagementSystem.Agent.PilotStatusAgent import PilotStatusAgent
from DIRAC import gLogger, S_OK
# Mock objects
mockReply = MagicMock()
mockReply.return_value = {"OK": True, "Value": []}
mockAM = Ma... | ic-hep/DIRAC | src/DIRAC/WorkloadManagementSystem/Agent/test/Test_Agent_PilotStatusAgent.py | Python | gpl-3.0 | 2,799 | [
"DIRAC"
] | d01e2cd46a4f2d9a4fe747f8ac04da539774684cdab7b246e723a9c9f95a56ac |
dicewords = {'11111':"a",
'11112':"a&p",
'11113':"as",
'11114':"aa",
'11115':"aaa",
'11116':"aaaa",
'11121':"aaron",
'11122':"ab",
'11123':"aba",
'11124':"ababa",
'11125':"aback",
'11126':"abase",
'11131':"abash",
'11132':"abate",
'11133':"abbas",
'11134':"abbe",
'11135':"abbey",
'11136':"abbot",
'11141':"abbott",
'111... | joekari/dxbot | dicewords.py | Python | mit | 126,284 | [
"Amber",
"BLAST",
"Brian",
"DIRAC",
"Elk",
"GULP",
"Galaxy",
"MOE",
"MOOSE",
"NEURON",
"VisIt"
] | 771d5de2e1bba9e8736f4fb7dc7e5e32e54b88aa5fcfa45f5f6353f9f96f4f14 |
#!/usr/bin/env python
###############################################################################
# #
# utilities.py #
# ... | minillinim/BamTyper | bamtyper/utilities.py | Python | gpl-3.0 | 40,554 | [
"pysam"
] | 8309d0ef9358d13eb4a4604ffd00639effac3bd1e1f5e8d42c715cab65904310 |
from typing import Dict, List, Optional
from dataclasses import dataclass
def get_request_options():
request_options = RequestOptions()
request_options.add_option(
'portal usage per month combined',
None,
'portalUsage',
None
)
request_options.add_option(
'portal usage: filterChange per month'... | ICOS-Carbon-Portal/data | src/main/python/portalusage/RequestOptions.py | Python | gpl-3.0 | 4,825 | [
"NetCDF"
] | 67da8e6961a7e160ab566d067f0cef2fdadc2be8a8ef67dd17e81172736ba367 |
import numpy
import os
import subprocess
# from time import sleep
# Rotates input xyz file and generates 100 output xyz files at random orientations along with input.scan for each of them to give as input to mechAFM
def makeIt(output_folder = "randomRotateOutput/"):
fileNumber = 0
for x in range(41):
... | SINGROUP/readAFM | databaseCode/toyDB/oneAtomShifted/makeXYZ.py | Python | gpl-3.0 | 4,011 | [
"CHARMM"
] | a11be4f463bead70e9c63cb582f631d60ebc14e22b79b1b8fcd54731f0320d30 |
# Copyright 2000 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
# Gavin E. Crooks 2001-11-07:
# Interface and comments modified to reflect changes to the ... | bryback/quickseq | genescript/Bio/SCOP/Dom.py | Python | mit | 2,370 | [
"Biopython"
] | 8ad03346845a7590295a3a983fd80952ce6b618812a3c3e2fe9b3fbf75e06e2d |
import pytest
from unshortenit.exceptions import NotFound, UnshortenFailed
@pytest.fixture
def module():
from unshortenit.modules import ShorteSt
return ShorteSt()
def test_shortest_valid_link(module):
uri = module.unshorten('http://sh.st/INTI')
assert uri == 'https://adf.ly/b2H0Y'
def test_shorte... | jkehler/unshortenit | tests/modules/test_shortest.py | Python | mit | 614 | [
"ADF"
] | 65fd2c60118c42141b4481eaf323b3643e5392a4770c2efee7b9d69e0a0f2048 |
from pype.ast import *
from symtab import *
from lib_import import LibraryImporter
class SymbolTableVisitor(ASTVisitor):
def __init__(self):
self.symbol_table = SymbolTable()
self.scope='global'
def return_value(self):
return self.symbol_table
def visit(self, node):
if isinstance(node, ASTImpor... | cs207-project/pype-package | tests/translate.py | Python | mit | 1,708 | [
"VisIt"
] | 9a67eeeabe1e5eb6a6b9701eba9263bffc847aea31cef75ac03b0c289caffa22 |
import unittest
class TestVTK(unittest.TestCase):
def test_import(self):
import vtk
| Kaggle/docker-python | tests/test_vtk.py | Python | apache-2.0 | 98 | [
"VTK"
] | 3ca2ac3b4f0d7edbb327f4880555559fb09f48f21fd05a9bef43495e861c7daa |
#!/usr/bin/python
# -*- coding: utf-8 -*-
dimensions= 2
size1d = 10
halfSize = [size1d*2,size1d*1.2,0.1]
# wavepacket parameters
k0_x = 3
k0_y = 2
gaussWidth_x = 1.0
gaussWidth_y = 2.0
potentialCoefficient= [0.2,0.5,0.5]
# potential parameters
potentialCenter = [ 0, 0 ,0 ]
potentialHalfSize = h... | cosurgi/trunk | examples/qm/2d-harmonic.py | Python | gpl-2.0 | 3,211 | [
"Gaussian"
] | 7c051382b7f46559bf9b89c1e16adda9e7d88e395409871768594f90ed82c69e |
"""
An example showing the norm and phase of an atomic orbital: isosurfaces of
the norm, with colors displaying the phase.
This example shows how you can apply a filter on one data set, and dislay
a second data set on the output of the filter. Here we use the contour
filter to extract isosurfaces of the norm of a com... | liulion/mayavi | docs/source/mayavi/auto/atomic_orbital.py | Python | bsd-3-clause | 2,866 | [
"Mayavi"
] | b35d964607eb39f2b593ccd4e523e26336d65011cee6abd541e8dd55ec45cc4c |
# -*- coding: utf-8 -*-
from __future__ import print_function
"""Check GW calculations.
Compare to data from:
Predictive GW calculations using plane waves and pseudopotentials
Jiří Klimeš, Merzuk Kaltak, Georg Kresse
http://arxiv.org/abs/1404.3101
"""
import ase.db
# Table II:
lda = {
'C': [... | robwarm/gpaw-symm | gpaw/test/big/gw/check.py | Python | gpl-3.0 | 4,018 | [
"ASE",
"GPAW"
] | c4bbfb239a2874d4987681ea71308bac87a12030491f674ad73bf3b5a027494d |
# -*- coding: utf-8 -*-
# -----------------------------------------------------------------------
# Copyright (c) 2009 Jendrik Seipp
#
# RedNotebook is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either vers... | serialdoom/rednotebook | rednotebook/info.py | Python | gpl-2.0 | 24,447 | [
"VisIt"
] | f7b38ff4d97fe28adebd7e636e8d3374516730833b1f2ea7e56a62dc45913d24 |
#
# Copyright (C) 2003 Rational Discovery LLC
# All rights are reserved.
#
from __future__ import print_function
from elementtree.ElementTree import ElementTree,Element,SubElement
import time
def _ConvertModelPerformance(perf,modelPerf):
if len(modelPerf)>3:
confMat = modelPerf[3]
accum = 0
for row in c... | soerendip42/rdkit | rdkit/ML/ModelPackage/PackageUtils.py | Python | bsd-3-clause | 4,499 | [
"RDKit"
] | 68837743dc0a5f34fbd9e9fc97bb9e566be58de64608ceac8c52cdc2f2c2d86e |
#!/usr/bin/env python2
# Copyright (C) 2016-2017(H)
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, eit... | MrTheodor/espressopp | testsuite/sub_ens_bond/sub_ens_bond.py | Python | gpl-3.0 | 6,834 | [
"ESPResSo",
"VMD"
] | cda751a81368c3f59939f1f12bd8b05a49089f1230f565c139404fd69d0a8a41 |
from .creators import DispenseScheduleCreator, DispenseAppointmentCreator
from .period import Period
from .schedule import Schedule
from .schedule_collection import ScheduleCollection
from .schedule_validator import ScheduleValidator, ScheduleOverlapError
from .scheduler import Scheduler, InvalidScheduleConfig, Schedul... | botswana-harvard/edc-pharma | edc_pharmacy/old/scheduler/__init__.py | Python | gpl-2.0 | 407 | [
"VisIt"
] | 914e3b61580eaad22be7257f1396825d2732b331fb7138981d75c9abb2dda715 |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright (c) 2012 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.a... | sridevikoushik31/nova | nova/tests/compute/test_resource_tracker.py | Python | apache-2.0 | 33,735 | [
"exciting"
] | 40ae974db5add1def15d19e97b8dd6ac79a154557b4549034147ef553789453c |
#!/usr/bin/env python
""" load metabolome into OSDF using info from data file """
import os
import re
from cutlass.Metabolome import Metabolome
import settings
from cutlass_utils import \
load_data, get_parent_node_id, list_tags, format_query, \
write_csv_headers, values_to_node_dict, write_out_csv, ... | TheJacksonLaboratory/osdf_submit | nodes/metabolome.py | Python | gpl-3.0 | 5,242 | [
"VisIt"
] | 4f264557beb3e6a8335780e72d8c326196d59117a2ea0a5cd4b2ce68c03e63ba |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
... | kain88-de/mdanalysis | testsuite/MDAnalysisTests/test_altloc.py | Python | gpl-2.0 | 2,542 | [
"MDAnalysis"
] | 8943e4b09b749dcab72cffd3c765b511edff0be4d0c47b6143ed2cd06c9e26d0 |
#!python
"""\
Easy Install
------------
A tool for doing automatic download/extract/build of distutils-based Python
packages. For detailed documentation, see the accompanying EasyInstall.txt
file, or visit the `EasyInstall home page`__.
__ http://packages.python.org/distribute/easy_install.html
"""
import sys, os.p... | davidvon/pipa-pay-server | site-packages/distribute-0.6.27-py2.7.egg/setuptools/command/easy_install.py | Python | apache-2.0 | 72,272 | [
"VisIt"
] | 1df9aae47f9a0ce48825e13d75445df8b149763b51a5084b8998598c445f12e5 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
import warnings
import numpy as np
from pymatgen.analysis.ewald import EwaldMinimizer, EwaldSummation
from pymatgen.io.vasp.inputs import Poscar
from pymatgen.util.testing import PymatgenTest
cla... | vorwerkc/pymatgen | pymatgen/analysis/tests/test_ewald.py | Python | mit | 5,780 | [
"LAMMPS",
"VASP",
"pymatgen"
] | f7b2f29b6f87f56e25e6c6b623b96eb1e2be32c7be2bfa0097d08aebca7b67dd |
#-*- coding: cp936 -*-
# Modified based on Phatch
#---PIL modules import
from PIL import Image, ImageChops, ImageFilter, ImageEnhance, ImageOps
def has_transparency(image):
"""Checks if the image has transparency.
The image has an alpha band or a P mode with transparency.
:param image: the image to check... | QuinnSong/JPG-Tools | src/shadow.py | Python | gpl-3.0 | 19,284 | [
"Gaussian"
] | 51ee885ca27388fd7a7791c3b938308d36a2145b584d085946e1a66afb555a8c |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module define the various drones used to assimilate data.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
... | migueldiascosta/pymatgen | pymatgen/apps/borg/hive.py | Python | mit | 17,214 | [
"Gaussian",
"VASP",
"pymatgen"
] | 0597aa7f6e7769c0704f7bccbcafebe7dd9a9771baf96179cb5952a512fce567 |
#!/usr/bin/env python2
# vim:fileencoding=UTF-8
from __future__ import (unicode_literals, division, absolute_import,
print_function)
__license__ = 'GPL v3'
__copyright__ = '2013, Kovid Goyal <kovid@kovidgoyal.net>'
__docformat__ = 'restructuredtext en'
from collections import OrderedDict
fr... | ashang/calibre | src/calibre/ebooks/metadata/sources/google_images.py | Python | gpl-3.0 | 4,870 | [
"VisIt"
] | 73e650f49ab0cb4d60f719b5a078fa8f6d449977020f2692577eef39d05c4acc |
import sys
import ast
from collections import namedtuple
from distutils.version import LooseVersion
from axidrawinternal.plot_utils_import import from_dependency_import
ebb_serial = from_dependency_import('plotink.ebb_serial') # Requires v 0.13 in plotink https://github.com/evil-mad/plotink
requests = from_depende... | evil-mad/axidraw | inkscape driver/axidraw_options/versions.py | Python | gpl-2.0 | 5,785 | [
"VisIt"
] | 7058d3a663ed02f050894868949c1d3f8c2de40aff9209c7418f90a01fbac9a9 |
# -*- coding: utf-8 -*-
"""Sample controller with all its actions protected."""
from tg import expose, flash, redirect, request
from tg.i18n import lazy_ugettext as l_
from molgears.model import DBSession, Tags, SFiles, LCompound, LPurity, LHistory, Group, Names, SCompound
from molgears.model import Compound, User, Pro... | admed/molgears | controllers/library.py | Python | bsd-3-clause | 58,444 | [
"RDKit"
] | 4f3e77dec86f13ccf6ee678a1e794713b29cdb7dba8118192d74a605bf981abd |
import sys
sys.path.insert(1, "../../../")
import h2o, tests
def weights_and_distributions():
htable = h2o.upload_file(tests.locate("smalldata/gbm_test/moppe.csv"))
htable["premiekl"] = htable["premiekl"].asfactor()
htable["moptva"] = htable["moptva"].asfactor()
htable["zon"] = htable["zon"]
# g... | kyoren/https-github.com-h2oai-h2o-3 | h2o-py/tests/testdir_algos/deeplearning/pyunit_weights_and_distributionsDeeplearning.py | Python | apache-2.0 | 1,126 | [
"Gaussian"
] | 4d8497d38605e67028994b82b630214851a72aa34348e323ffbb3b56b06c93db |
#!/usr/bin/env python
# CREATED:2013-03-11 18:14:30 by Brian McFee <brm2132@columbia.edu>
# unit tests for librosa.onset
from __future__ import print_function
from nose.tools import raises, eq_
# Disable cache
import os
try:
os.environ.pop('LIBROSA_CACHE_DIR')
except:
pass
import warnings
import numpy as ... | r9y9/librosa | tests/test_onset.py | Python | isc | 8,533 | [
"Brian"
] | cac7d81a903cc24c1d5ed02059beb222756faf00eee6fe13d7be12def17ba12d |
# -*- coding: utf-8 -*-
# Description: class NeuroML for loading NeuroML from single file into MOOSE
# Version 1.0 by Aditya Gilra, NCBS, Bangalore, India, 2011 for serial MOOSE
# Version 1.5 by Niraj Dudani, NCBS, Bangalore, India, 2012, ported to parallel MOOSE
# Version 1.6 by Aditya Gilra, NCBS, Bangalore, India, ... | dilawar/moose-core | python/moose/neuroml/NeuroML.py | Python | gpl-3.0 | 8,050 | [
"MOOSE"
] | 1256567334ff8ed0b0ac9672ddc53e9008dc29c43261e9b42207944189695dea |
# -*- coding: utf-8 -*-
"""
pytasa.fundamental - basic operations with elastic constant matrices
This module provides functions that operate on single elastic constant
matrices represented as 6x6 numpy arrays (Voigt notation).
"""
from __future__ import print_function
import numpy as np
def _velo(X,rh,C):
"""P... | alanfbaird/PyTASA | pytasa/fundamental.py | Python | mit | 13,770 | [
"CRYSTAL"
] | eb9012b22bd03ae6c6fab1614b2305c22f387d6884e7ca4030fd3832c3852b8d |
from dsltools import Traversal
from ..syntax import const
from ..ndtypes import ArrayT, ClosureT, ScalarT, TupleT
from shape import Closure, Scalar, Var, AnyScalar, any_scalar, computable_dim
class ArgConverter(Traversal):
def __init__(self, codegen):
self.codegen = codegen
self.var_counter = 0
self... | pombredanne/parakeet | parakeet/shape_inference/shape_codegen.py | Python | bsd-3-clause | 3,213 | [
"VisIt"
] | 1f3ac4618429c0a0392d0a95185daeaf522b1a0196a181f3893b0f67ff2639ee |
#!/usr/bin/env python
# -*- coding=utf-8 -*-
from pymatgen.core import Molecule, SymmOp
import numpy as np
def local_frame(mol, origin=0, xat=1, yat=2, barycenter=False):
"""
Return a new molecule object where the atoms are in the local frame defined
from the three atoms given as argument.
Args:
... | gVallverdu/myScripts | Various/ads.py | Python | gpl-2.0 | 7,950 | [
"VASP",
"pymatgen"
] | 8649fa67df6942da66912be06dcb4032ca22f6c67076f7d2f8ab90f2940a1b5b |
#
# QAPI types generator
#
# Copyright IBM, Corp. 2011
#
# Authors:
# Anthony Liguori <aliguori@us.ibm.com>
#
# This work is licensed under the terms of the GNU GPLv2.
# See the COPYING.LIB file in the top-level directory.
from ordereddict import OrderedDict
from qapi import *
import sys
import os
import getopt
impor... | rpaleari/qtrace | src/scripts/qapi-types.py | Python | gpl-2.0 | 10,389 | [
"VisIt"
] | fbd8e4659fc906827266f5bec0fcc584089efcb04083d3ebfdcdbee0bedbc768 |
import unittest
from mock import patch
from envs import env
from warrant import Cognito, UserObj, GroupObj, TokenVerificationException
from warrant.aws_srp import AWSSRP
class UserObjTestCase(unittest.TestCase):
def setUp(self):
if env('USE_CLIENT_SECRET') == 'True':
self.app_id = env('COGN... | capless/warrant | warrant/tests/tests.py | Python | apache-2.0 | 7,402 | [
"Brian"
] | fb150198b4830032591540b3c446b07db3b3d70d4851f278746a0d3f9b9b53c0 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
import datetime
import json
import os
import gzip
import shutil
import stat
from contextlib import contextmanager, clos... | bsmedberg/socorro | socorro/external/fs/crashstorage.py | Python | mpl-2.0 | 25,969 | [
"VisIt"
] | 42d10a00f83741d1bb8954aa684ec08193bdcf9857716c276d4ac2c1e16b35b0 |
from __future__ import print_function
from tempfile import NamedTemporaryFile
from ase.io.trajectory import TrajectoryReader, Trajectory
from pyiid.calc.calc_1d import Calc1D
from pyiid.experiments.elasticscatter import ElasticScatter
from pyiid.sim.nuts_hmc import NUTSCanonicalEnsemble
from pyiid.tests import *
__... | CJ-Wright/pyIID | pyiid/tests/test_sim/test_nuts.py | Python | bsd-3-clause | 4,811 | [
"ASE"
] | 12955d434d2fb49684395b15631430b6e6bc47aa353f31dd01040fc7f7673f6f |
import urllib,urllib2,re,cookielib,os,sys
import xbmc, xbmcgui, xbmcaddon, xbmcplugin,time
from resources.modules import main, vipplaylist,resolvers
import subprocess
import FuckNeulionClient
from addon.common.addon import Addon
addon_id = 'plugin.video.phstreams'
selfAddon = xbmcaddon.Addon(id=addon_id)
addon = Addon... | siouka/dmind | plugin.video.phstreams/resources/modules/nhl.py | Python | gpl-2.0 | 10,141 | [
"VisIt"
] | 5646c84069d7f4476866a0aceab90b85d193d549500c83d72441922f6bbeb2ce |
#!/usr/bin/python
#Author: Lori Glenwinkel
# CREATE DATE: 2014
# DESCRIPTION:Feeds user input from the Galaxy TargetOrtho tool to TargetOrtho.py.
import os,sys,datetime
p=os.path.abspath(__file__).split('/')[1:-3]
s=''
for i in p:
s=s +'/%s'%i
TargetOrtho_path=s
def assign_jobID():
"""assign a Galaxy job ID"... | loriglenwinkel/TargetOrtho | run/scripts/TargetOrtho_galaxy.py | Python | mit | 6,131 | [
"Galaxy"
] | cfea9e94adb7f6431c47a0c5656ce198423c95c2d25f78072ab5755fb966973f |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2017, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Unit tests for parser ccio module."""
import os
import sys
import tempfile
from io import StringIO
import unittest
fro... | cclib/cclib | test/io/testccio.py | Python | bsd-3-clause | 6,733 | [
"ADF",
"Dalton",
"GAMESS",
"Gaussian",
"Jaguar",
"MOPAC",
"Molpro",
"NWChem",
"ORCA",
"Psi4",
"cclib"
] | f447cf473ca823d6e837780faef5571bf33872679fa0ece501f4dd7366c6105d |
# coding: utf8
# Adafruit BNO055 Absolute Orientation Sensor Library
# Copyright (c) 2015 Adafruit Industries
# Author: Tony DiCola
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without r... | makerplane/FIX-Gateway | fixgw/plugins/rpi_bno055/Adafruit_BNO055/BNO055.py | Python | gpl-2.0 | 29,872 | [
"CRYSTAL"
] | 29ce845d966f83b00a4d3bd619c1d961bde503596b29854ce86d88e39a859779 |
# -*- coding: utf-8 -*-
# Copyright (c) 2015-2020, Exa Analytics Development Team
# Distributed under the terms of the Apache License 2.0
"""
Common conversion factors
##########################################
Conversion factors from the tabulated physical constants from `NIST`_.
All of the entries that end with relat... | exa-analytics/exa | exa/util/conversions.py | Python | apache-2.0 | 2,767 | [
"Dalton"
] | 5125a20b37764736baea81fe2cfabd68eb7f9ae3493b06ca1985edb49c951ec9 |
"""
A plugin for reading BAS aircraft files
"""
from cis.data_io.products import AProduct
import logging
class BAS_aircraft(AProduct):
def get_file_signature(self):
return [r'.*\.nc']
def create_coords(self, filenames, usr_variable=None):
from cis.data_io.netcdf import read_many_files_indivi... | duncanwp/cis_plugins | BAS_aircraft.py | Python | lgpl-3.0 | 3,572 | [
"NetCDF"
] | d12a95a50e5fd65483670900aaa4cd2f6d8e1d124450530fa1c32487d7386f29 |
""" Client-side transfer class for monitoring system
"""
import time
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC import S_OK
class SiteMapClient:
###########################################################################
def __init__( self, getRPCClient = None ):
self.getRPCClient = getRPCCl... | Sbalbp/DIRAC | FrameworkSystem/Client/SiteMapClient.py | Python | gpl-3.0 | 1,184 | [
"DIRAC"
] | aa1779f864e337bcfa7e28ce9ba9a5fe17835627567ada78f32a958cd9a51ddf |
from coalib.bearlib.abstractions.Linter import linter
from coalib.bears.requirements.DistributionRequirement import (
DistributionRequirement)
@linter(executable='verilator',
output_format='regex',
use_stderr=True,
output_regex=r'\%(?:(?P<severity>Error|Warning.*?).*?):'
... | sounak98/coala-bears | bears/verilog/VerilogLintBear.py | Python | agpl-3.0 | 1,474 | [
"VisIt"
] | fda5d62724a1e276bcfc0a1934b05e79cee757e5aba6f2ea9375d4f5f7d740ce |
""" This is an example of using th Optuna (https://optuna.org/) hyper-parameter optimizer
to select which optimizer (and paramter set) performs best on a set of circuits.
There are several parameters that need to be set for this to run:
* OptimizerList: this is the list of opimzers to try
* n_tria... | danecollins/pyawr | pyawr/optuna_single_project.py | Python | mit | 17,556 | [
"Gaussian"
] | bb346f5b35dd87e046901ddc8fe0c59d96718d97e6ccb15d5a2df1e34679efca |
# -*- coding: utf-8 -*-
'''Chemical Engineering Design Library (ChEDL). Utilities for process modeling.
Copyright (C) 2017, 2018, 2019 Caleb Bell <Caleb.Andrew.Bell@gmail.com>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software... | CalebBell/thermo | thermo/mixture.py | Python | mit | 125,376 | [
"RDKit"
] | 3352c5272dd105422f7b7c7146a529600360e0c91e30bd2c5087618f238ef442 |
# -*- coding: utf-8 -*-
"""
config
~~~~~~
Configuration settings.
:copyright: 2009 by tipfy.org.
:license: BSD, see LICENSE for more details.
"""
config = {}
# Configuration for the 'tipfy' module.
config['tipfy'] = {
# Enable debugger. It will be loaded only in development.
'middleware':... | ac001/moe | project/app/config.py | Python | bsd-3-clause | 1,001 | [
"MOE"
] | d3867fbbd6378f1b530fb79d5f8e3fbebedef86a5e86957cbcaed704127d33a4 |
# revlog.py - storage back-end for mercurial
#
# Copyright 2005-2007 Matt Mackall <mpm@selenic.com>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
"""Storage back-end for Mercurial.
This provides efficient delta storage with O(1... | jordigh/mercurial-crew | mercurial/revlog.py | Python | gpl-2.0 | 45,834 | [
"VisIt"
] | 1c76d247b464d8b713ae98b20718d50630f248a65d9c3d0071c6b10a409122d3 |
#!python
"""
reloadall.py: transitively reload nested modules (2.X + 3.X).
Call reload_all with one or more imported module module objects.
"""
import types
from imp import reload # from required in 3.X
def status(module):
print('reloading ' + module.__name__)
def tr... | simontakite/sysadmin | pythonscripts/learningPython/reloadall.py | Python | gpl-2.0 | 1,831 | [
"VisIt"
] | 50edaa5613f3912671c2b96b2579670fb47187b9ff02812b7e189d406a69e928 |
#!/usr/bin/python3
"""
===============================================================================
title :main.py for wisewebspider package
description :Scrapes and downloads all publicly availabe spectra from
WISeREP.
authors :Jerod Parrent, James Guillochon
date ... | jparrent/WISeWEBSpider | wisewebspider/main.py | Python | gpl-3.0 | 26,277 | [
"Galaxy"
] | 484bec399d7a717d613d50563dceb18e81e09228873dff16877e51605b6478c9 |
#!/usr/bin/env python
# Modification History
# 01/28/2017 Add jsdoc2md and some print statements to trace what's going on. Brian S Hayes (Hayeswise)
# 02/04/2017 Add if exists check around distribution file rather than use try block. Brian S Hayes (Hayeswise)
import glob
import time
import re
import io
import base64
... | hayeswise/ingress-intel-total-conversion | wise-build.py | Python | isc | 17,501 | [
"Brian"
] | dd3394a1a1165365f298805a9feb72fba3ee4ca8a88647dd3a32e271d32ad6e0 |
#!/usr/bin/env python
"""
Artificial Intelligence for Humans
Volume 1: Fundamental Algorithms
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2013 by Jeff Heaton
Licensed under the Apache License, Version 2... | PeterLauris/aifh | vol1/python-examples/examples/example_logit.py | Python | apache-2.0 | 4,422 | [
"VisIt"
] | 8cd6e433ed656f78cff9699878459d95ff051751beaded1d41433b847ba7049e |
# -*- coding: utf-8 -*-
# (c) 2017, Brian Coca <bcoca@ansible.com>
# (c) 2017, Adam Miller <admiller@redhat.com>
# (c) 2017 Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
... | ansible/ansible | lib/ansible/modules/sysvinit.py | Python | gpl-3.0 | 13,798 | [
"Brian"
] | c4585f40bc1375c6d5ef155d948b4778b143754d2ddeb8e25a8635aa870222cd |
# !usr/bin/env python2
# -*- coding: utf-8 -*-
#
# Licensed under a 3-clause BSD license.
#
# @Author: Brian Cherinka
# @Date: 2017-05-19 17:00:49
# @Last modified by: Brian Cherinka
# @Last Modified time: 2017-07-30 19:23:16
from __future__ import print_function, division, absolute_import
from tests.api.conftest ... | sdss/marvin | tests/api/test_modelcube.py | Python | bsd-3-clause | 2,893 | [
"Brian",
"Galaxy"
] | 3a1f4226c3a9b64b710e25f788845533eb7a4b223a64abf4e37ea5c67d7defe5 |
import numpy as np
def affine_forward(x, w, b):
"""
Computes the forward pass for an affine (fully-connected) layer.
The input x has shape (N, d_1, ..., d_k) where x[i] is the ith input.
We multiply this against a weight matrix of shape (D, M) where
D = \prod_i d_i
Inputs:
x - Input data, of... | UltronAI/Deep-Learning | CS231n/reference/cnn_assignments-master/assignment3/cs231n/layers.py | Python | mit | 5,070 | [
"NEURON"
] | a524b65382dc44e6127e8350ed980d63d625adf41b8e47418b653cb03fa87ade |
r"""
:mod:`~matplotlib.mathtext` is a module for parsing a subset of the
TeX math syntax and drawing them to a matplotlib backend.
For a tutorial of its usage see :ref:`mathtext-tutorial`. This
document is primarily concerned with implementation details.
The module uses pyparsing_ to parse the TeX expression.
.. _p... | tkaitchuck/nupic | external/linux64/lib/python2.6/site-packages/matplotlib/mathtext.py | Python | gpl-3.0 | 101,723 | [
"Bowtie"
] | d12e0d45ae00ea0c925832eecd933e6644ecedd8010f43a0162bf0e553547241 |
import os
from random import randrange
from math import ceil
# Déclaration des variables de départ
argent = 1000 # On a 1000 $ au début du jeu
continuer_partie = True # Booléen qui est vrai tant qu'on doit
# continuer la partie
print("Vous vous installez à la table de roulette avec", argent, "$.")
while continuer_... | david-co/veamos | test.py | Python | lgpl-2.1 | 2,875 | [
"CASINO"
] | eeec7218fe62493626a21bb9c9d11a5a79ee9fbf37aca2b6aaafe1a58e9a100e |
from pygraph.classes.digraph import digraph
from pygraph.algorithms.searching import depth_first_search
import sys
import re
RHETORICAL_RELATIONS = [
"continuation",
"narration",
"result",
"contrast",
"parallel",
"precondition",
"consequence",
"conditional",
"alternation",
"back... | valeriobasile/learningbyreading | src/unboxer/drg.py | Python | gpl-2.0 | 5,125 | [
"VisIt"
] | 45a77f4361acd1deb377f8122cc56f0f7b191d624b12aecc0dd158bd73330cd4 |
"""Polynomial factorization routines in characteristic zero. """
from sympy.polys.galoistools import (
gf_from_int_poly, gf_to_int_poly,
gf_lshift, gf_add_mul, gf_mul,
gf_div, gf_rem,
gf_gcdex,
gf_sqf_p,
gf_factor_sqf, gf_factor)
from sympy.polys.densebasic import (
dup_LC, dmp_LC, dmp_gro... | amitjamadagni/sympy | sympy/polys/factortools.py | Python | bsd-3-clause | 33,232 | [
"Gaussian"
] | 4cbe3761193584ee62a680ac8bbea79957d7695c724c14627c1f07e45e56c74f |
"""Leetcode 98. Validate Binary Search Tree
Medium
URL: https://leetcode.com/problems/validate-binary-search-tree/
Given a binary tree, determine if it is a valid binary search tree (BST).
Assume a BST is defined as follows:
The left subtree of a node contains only nodes with keys less than the
node's key. The rig... | bowen0701/algorithms_data_structures | lc0098_validate_binary_search_tree.py | Python | bsd-2-clause | 8,897 | [
"VisIt"
] | b5560f5e8beb42a04296dc4b1950af2cd622aad8d5fb8388a3fbedcefd95d54c |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/plugins/songs/songsplugin.py | Python | gpl-2.0 | 14,434 | [
"Brian"
] | a6a95f73291606299c449bf99287174aafe5b0bd55b7661b9d6b67e5652ac425 |
"""Django settings for Pontoon."""
import os
import socket
from django.utils.functional import lazy
import dj_database_url
_dirname = os.path.dirname
ROOT = _dirname(_dirname(_dirname(os.path.abspath(__file__))))
def path(*args):
return os.path.join(ROOT, *args)
# Environment-dependent settings. These are ... | participedia/pontoon | pontoon/settings/base.py | Python | bsd-3-clause | 23,783 | [
"VisIt"
] | 7481422e0a3c72da00d049d3070d45e93500e932554b8b4d31b1eff8f685afef |
"""
Atom-based Bootstrap Embedding
"""
import os
import time
import numpy as np
import multiprocessing as mtproc
import itertools as its
from frankenstein.be import BE
from frankenstein.pyscf_be.pysd_atom import pySDATOM
from frankenstein.tools.io_utils import prtvar
"""
Methods for setting up fragments/getting in... | hongzhouye/frankenstein | be/bemol.py | Python | bsd-3-clause | 26,819 | [
"PyMOL",
"PySCF"
] | 53bab75b9c5e972affdfc2a31491c352120c5080048e111f94c3e6eae856bab9 |
"""
SystemLoggingReportHandler allows a remote system to access the contest
of the SystemLoggingDB
The following methods are available in the Service interface
getTopErrors()
getGroups()
getSites()
getSystems()
getSubSystems()
getFixedTextStrings()
getCountMessages()
getGroupedMess... | Andrew-McNab-UK/DIRAC | FrameworkSystem/Service/SystemLoggingReportHandler.py | Python | gpl-3.0 | 8,376 | [
"DIRAC"
] | dbc47882c85eb24e1017a3c5651b6084a2ccbf2d139841c794029097245c5366 |
"""
Shared constants across the bcbio-nextgen-vm project.
"""
import logging
import os
import sys
# pylint: disable=no-init,old-style-class
DOCKER = {
"port": 8085,
"biodata_dir": "/usr/local/share/bcbio-nextgen",
"work_dir": "/mnt/work",
"image_url": "bcbio/bcbio",
}
class ANSIBLE:
"""Ansible... | alexandrucoman/bcbio-nextgen-vm | bcbiovm/common/constant.py | Python | mit | 2,562 | [
"BWA",
"Bioconda",
"Bowtie"
] | efc2272fc5698d5f4aae6eb3cd71b8efd6ac8b8008805bb199f6fc5e4987264f |
# -*- coding: utf-8 -*-
"""
Created on Sat Dec 19 02:52:03 2015
@author: ylks
"""
'''
Regression Example
'''
from StringGPy.samplers.regression import SGPRegressor
# Create the model.
kernel_type = "se" # Many kernels are available including Matern 1/2, 3/2, 5/2, RQ, and stationary spectral kernels.
... | YLnKS/StringGPy | StringGPy/examples/example.py | Python | bsd-3-clause | 2,762 | [
"Gaussian"
] | 1e0bb6710008fede44b1b76dca0e22b2347a1182b3b8126209e90945ceb6f273 |
#!/usr/bin/env python
#-*- encoding: utf-8 -*-
"""
GUI front end for qrencode based on the work of David Green:
<david4dev@gmail.com> https://launchpad.net/qr-code-creator/
and inspired by
http://www.omgubuntu.co.uk/2011/03/how-to-create-qr-codes-in-ubuntu/
uses python-zbar for decoding from files and webcam
"""
impo... | primetang/qrtools | src/qtqr.py | Python | gpl-3.0 | 34,107 | [
"VisIt"
] | 56f7c0b09796296182d52b5a66c5b7767fe14fab8a3dce98a7de3ec725acce99 |
import numpy as np
from scipy.misc import derivative
from scipy.special import erf
import pytest
from starlight.models_cy import *
relative_accuracy = 0.0001
NREPEAT = 10
def gaussian(x, mu, sig):
return np.exp(-0.5*((x - mu)/sig)**2) / np.sqrt(2*np.pi) / sig
def gaussian_grad(x, mu, sig):
return - gauss... | ixkael/Starlight | tests/test_models_cy.py | Python | mit | 24,202 | [
"Gaussian"
] | 70a6e729fc3ff93d54cfef2ddce1f50ce2443b7ed6426bed848fe3603894b692 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_importer_dialog.py | Python | gpl-2.0 | 1,582 | [
"VisIt"
] | cd863c096ce71bdd379dda536619271194f619b27431332e1a73024de6cd8a61 |
"""
Contains methods for generating a pdbbind dataset mapping
complexes (protein + ligand) to experimental binding measurement.
"""
import pickle
import os
import pandas as pd
from rdkit import Chem
from glob import glob
import re
def extract_labels(pdbbind_label_file):
"""Extract labels from pdbbind label file."... | evanfeinberg/deep-learning | datasets/construct_pdbbind_df.py | Python | lgpl-3.0 | 3,351 | [
"RDKit"
] | 339095a47ca1de84c94e976aaa74be67eb220a61bf547913ae7898a83089aea9 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
#!/usr/bin/env python
from __future__ import division, unicode_literals
"""
#TODO: Write module doc.
"""
__author__ = 'Shyue Ping Ong'
__copyright__ = 'Copyright 2013, The Materials Virtual Lab'
__version__ =... | Bismarrck/pymatgen | pymatgen/io/aseio.py | Python | mit | 594 | [
"ASE",
"pymatgen"
] | ecdc9c5fc2d2f363284e9eb9d71389e7a89b6f2ef04b2dc99ade372da8ec6061 |
import logging
log = logging.getLogger(__name__)
import itertools
import numpy as np
from collections import OrderedDict
from pycqed.analysis import analysis_toolbox as a_tools
from pycqed.analysis_v3 import helper_functions as hlp_mod
from pycqed.analysis_v3 import processing_pipeline as pp_mod
from pycqed.measuremen... | QudevETH/PycQED_py3 | pycqed/analysis_v3/data_processing.py | Python | mit | 66,982 | [
"Gaussian"
] | cc10895d2039fde46b70e397553a8b24e995175803b98d2e8a0ef964b5b1d918 |
"""
Copyright 2020 Google LLC
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
https://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
di... | google/patents-public-data | tools/bigquery-indexer/main.py | Python | apache-2.0 | 5,271 | [
"RDKit"
] | 58bd519185dc465556a11f2577aaea4d424a22e2e1cdbba559ba176d80beec78 |
import os.path as op
from sfepy.base.base import *
from sfepy.base.progressbar import MyBar
from sfepy.fem.evaluate import eval_equations
import freeFormDef as ffd
from sfepy.terms import CharacteristicFunction
##
# c: 15.10.2007, r: 15.04.2008
def update_mesh( shape_opt, pb, design ):
output( 'mesh update (%d)!'... | olivierverdier/sfepy | sfepy/optimize/shapeOptim.py | Python | bsd-3-clause | 13,452 | [
"VTK"
] | 05983567658a04dfeeb22118190989035f33ebe82263b84f15046383f10a1246 |
try:
import unittest2 as unittest
except ImportError:
import unittest
from bpython.curtsiesfrontend.manual_readline import \
left_arrow, right_arrow, beginning_of_line, forward_word, back_word, \
end_of_line, delete, last_word_pos, backspace, delete_from_cursor_back, \
delete_from_cursor_forward, d... | aktorion/bpython | bpython/test/test_manual_readline.py | Python | mit | 9,887 | [
"ADF"
] | 61bf61fed82cc5fc1ad6954b8e6695b1ff98853c63433c02d2c1bc55ca82ecc2 |
##
# @package RAMS.NXT
# @file NXTSonarSensor.py
# @author Brian Kim
# @date 7/24/14
# @brief an NXT wrapper around the SonarSensorAssembly to interface with
# the NXT sonar sensors
from RAMS.NXT.NXTSensor import NXTSensor
from RAMS.common.sensors.SonarSensorAssembly import SonarSensorAssembly
clas... | briansan/rams | RAMS/nxt/NXTSonarSensor.py | Python | bsd-3-clause | 481 | [
"Brian"
] | 20a5b3179fd50eb72ba51aff8461d07c17766e9b4cdd284c56e08a0537f00ade |
# Copyright (C) 2008 University of Maryland
# All rights reserved.
# See LICENSE.txt for details.
# Author: Christopher Metting
#Starting Date:6/19/2009
from numpy import *
from pylab import figure, show, subplot, imshow
#import approximations, view, scale, sample_prep, magPlotSlicer
from . import approximations
imp... | reflectometry/osrefl | osrefl/theory/scatter.py | Python | bsd-3-clause | 34,768 | [
"Gaussian"
] | a3f1b78773c2da86c0bee64e790cb641ec9bbebd859dd93f007c120252c90989 |
from numpy import *
class BayesClassifier(object):
def __init__(self):
""" Initialize classifier with training data. """
self.labels = [] # class labels
self.mean = [] # class mean
self.var = [] # class variances
self.n = 0 # nbr o... | siddhartharay007/PCV | pcv_book/bayes.py | Python | bsd-2-clause | 1,884 | [
"Gaussian"
] | 04ebb86e7faf8829a0c5b74444bdff5c4c87d007647e217277859f2e184f82af |
# Copyright (c) 2013, Web Notes Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
from frappe import session, _
from frappe.utils import today
from erpnext.utilities.transaction_base import TransactionBase
class ... | gangadharkadam/v5_erp | erpnext/support/doctype/customer_issue/customer_issue.py | Python | agpl-3.0 | 2,172 | [
"VisIt"
] | aed53c1edd6df54972896cb8236da453da7f4a1427ff079ed676dedb9199bf8b |
#! /usr/bin/python2
import subprocess
import sys
import os
import time
from subprocess import PIPE
import socket
default_params = ''
output_file_prefix = 'output'
if len(sys.argv) > 1:
output_file_prefix = sys.argv[1]
#
# SCENARIO
#
# 0: radial dam break
# 1: gaussian
# 2: balanced steady state u
# 3: balanced ste... | schreiberx/sweet | archive/benchmarks_plane/rexi_tests_lrz/2016_01_06_scalability_rexi_fd_run2/params.py | Python | mit | 5,450 | [
"Gaussian"
] | e0359e044e8f8a03dbe408846e4854e948eae044000ee3966c6ec2977c244f84 |
# $Id$
#
# Copyright (C) 2007-2010 Greg Landrum
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" General descriptor testing code
"""
from __f... | strets123/rdkit | rdkit/Chem/UnitTestDescriptors.py | Python | bsd-3-clause | 3,834 | [
"RDKit"
] | 03fda29e1f0ab7c8c776ebf5643ae1081d8101f382645cfe20205dc5c6387515 |
"""
Module to set up run time parameters for Clawpack -- classic code.
The values set in the function setrun are then written out to data files
that will be read in by the Fortran code.
"""
import os
import numpy as np
#------------------------------
def setrun(claw_pkg='classic'):
#--------------------------... | clawpack/adjoint | examples/acoustics_1d_heterogeneous/adjoint/setrun.py | Python | bsd-2-clause | 7,337 | [
"NetCDF"
] | da542e28ab1e6a1d19a7babcf0ae4d056fd394087262db2051f2ccb6a71d98f0 |
#! /usr/bin/env python
##############################################################################
## Phylogenomic tools package.
##
## Copyright 2013 Derrick J. Zwickl
## All rights reserved.
##
## See "LICENSE.txt" for terms and conditions of usage.
##
## If you use this work or any portion thereof in publis... | zwickl/pygot | setup.py | Python | mit | 6,099 | [
"Biopython"
] | bfdf3aae4cfc323f695fe154b7b2369eb58766027ef8da6a32f18d4cb37fb0c8 |
from simtk import unit as u
import simtk.openmm as mm
import openmmtools
testsystem = openmmtools.testsystems.WaterBox()
system, positions = testsystem.system, testsystem.positions
integrator = mm.CustomIntegrator(1.75 * u.femtoseconds)
temperature = 300 * u.kelvin
integrator.addPerDofVariable("x1", 0)
integrator.a... | kyleabeauchamp/HMCNotes | code/misc/test_nan.py | Python | gpl-2.0 | 2,063 | [
"Gaussian",
"OpenMM"
] | 5ea52d487dc0c51ec47c654ee9ad23da3aac0e2db5cfb6971f2d0e1156b9a133 |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
# CREATED:2015-02-16 13:10:05 by Brian McFee <brian.mcfee@nyu.edu>
'''Regression tests on metlab features'''
from __future__ import print_function
# Disable cache
import os
try:
os.environ.pop('LIBROSA_CACHE_DIR')
except:
pass
import matplotlib
matplotlib.use('... | craffel/librosa | tests/test_met_features.py | Python | isc | 4,341 | [
"Brian"
] | 8421ccb0a7a399c3ab62b158d5a11f10f080cf529c06a028f38ca839d60bc466 |
""" TransformationPlugin is a class wrapping the supported transformation plugins
"""
import random
from DIRAC import gConfig, gLogger, S_OK, S_ERROR
from DIRAC.Core.Utilities.SiteSEMapping import getSitesForSE, getSEsForSite
from DIRAC.Core.Utilities.List import breakListIntoChu... | coberger/DIRAC | TransformationSystem/Agent/TransformationPlugin.py | Python | gpl-3.0 | 12,211 | [
"DIRAC"
] | a9839e0b78e97b472a87611669fffc2375a5312ee60dbd2dc33c9715503c7712 |
# Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/nerfactor | nerfactor/util/img.py | Python | apache-2.0 | 8,343 | [
"Gaussian"
] | e241f083d191b94296e7235e4301ba7e2a4aae3a835cabe775f5da4480841930 |
# -*- coding: utf-8 -*-
# Part of Odoo. See LICENSE file for full copyright and licensing details.
from odoo.addons.account.tests.account_test_classes import AccountingTestCase
class ValuationReconciliationTestCase(AccountingTestCase):
""" Base class for tests checking interim accounts reconciliation works
i... | maxive/erp | addons/stock_account/tests/test_anglo_saxon_valuation_reconciliation_common.py | Python | agpl-3.0 | 5,469 | [
"MOOSE"
] | 852f372a88b57d1708af05e554aab3ef93c2d0f4e2150c1dd345d61d2c8c4eeb |
"""test_table_stream.py:
Test moose.TableStream.
This class takes over moose.Table and make sure that their vector is written
to stream. Once a chunk of data is written, it is removed from vector.
This way, moose never runs out of memory during simulation.
"""
__author__ = "Dilawar Singh"... | subhacom/moose-core | tests/python/streamer.py | Python | gpl-3.0 | 923 | [
"MOOSE"
] | 58475e35f72519c7098a2202a79edd4fded36bc110ee24a7842e021ca8d5c64e |
""" core implementation of testing process: init, session, runtest loop. """
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import contextlib
import functools
import os
import pkgutil
import sys
import attr
import py
import six
import _pytest._code
from _... | txomon/pytest | src/_pytest/main.py | Python | mit | 24,867 | [
"VisIt"
] | ae8902a2b54a734a7c145e180a9dae64efa7ae965d9973e184881f4099485d6b |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/lib/kpts_helper.py | Python | apache-2.0 | 13,932 | [
"PySCF"
] | 02ff3e47cddd0139abc1d8d589f67ef6a8ddb6721ad569e6bcac157bfd7ff449 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2006 Brian Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) ... | sam-m888/gramps | gramps/gen/mime/_winmime.py | Python | gpl-2.0 | 3,542 | [
"Brian"
] | 4cca63ce8197c190c733b9dc5379fe2063bc35dfc0f85a28e5c8963ec79af70b |
"""
Featurizes proposed binding pockets.
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
__author__ = "Bharath Ramsundar"
__copyright__ = "Copyright 2017, Stanford University"
__license__ = "GPL"
import numpy as np
import os
import pybel
import tempfil... | bowenliu16/deepchem | deepchem/feat/binding_pocket_features.py | Python | gpl-3.0 | 2,010 | [
"MDTraj",
"Pybel"
] | 5291a0bafb8f561aa13c71a6864240ab016f7e9bf41016ccf00fb92bc5dd9af9 |
#!/usr/bin/env python
"""
Created on Thu Dec 4 18:43:23 2014
Author: Oren Freifeld
Email: freifeld@csail.mit.edu
"""
import numpy as np
import cv2
import pylab
from pylab import plt
from of.gpu import CpuGpuArray
from of.utils import *
from cpab.cpa2d.TransformWrapper import TransformWrapper
from cpab.cpaNd.infer... | freifeld/cpabDiffeo | cpab/cpa2d/inference/transformation/Register.py | Python | mit | 15,510 | [
"Gaussian"
] | d54130995beef0942e32191e2ae9648caf39932c19fe0f5f21948b7ef57fb3d0 |
#!/usr/bin/env python
""" Performs a DIPS ping on a given target and exit with the return code.
It uses the local host certificate
The target is specified as ""<port>/System/Service"
The script does not print anything, and just exists with 0 in case of success,
or 1 in case of error """
__RCSID__ = "$Id$"
import sy... | andresailer/DIRAC | Interfaces/scripts/dirac-framework-self-ping.py | Python | gpl-3.0 | 860 | [
"DIRAC"
] | a1af14e92ab39b27669a90f55d8fe5ff7c810670ae23fe6d3450df032c068e00 |
"""
(c) 2011, 2012 Georgia Tech Research Corporation
This source code is released under the New BSD license. Please see
http://wiki.quantsoftware.org/index.php?title=QSTK_License
for license details.
This package includes code for representing and learning HMM's.
Most of the code in this package was derived from the... | hughdbrown/QSTK-nohist | src/qstklearn/hmm.py | Python | bsd-3-clause | 13,034 | [
"CASINO"
] | 57419b6cf159ab605c74882f6d6c3943ee41a1a2c6b0b96d74dbce076678af28 |
# Load dependencies
import ovito.vis
# Load the native code module
import Particles
# Inject selected classes into parent module.
ovito.vis.SimulationCellDisplay = Particles.SimulationCellDisplay
ovito.vis.ParticleDisplay = Particles.ParticleDisplay
ovito.vis.VectorDisplay = Particles.VectorDisplay
ovito.vis.BondsDis... | srinath-chakravarthy/ovito | src/plugins/particles/resources/python/ovito/vis/particles/__init__.py | Python | gpl-3.0 | 552 | [
"OVITO"
] | 481aca73192146e592162c7ea224bcad160298cc76789af73e66a5086a006493 |
database(
thermoLibraries = ['primaryThermoLibrary', 'GRI-Mech3.0']
)
species(
label='Cineole',
structure=SMILES('CC12CCC(CC1)C(C)(C)O2'),
)
species(
label='JP10',
structure=SMILES('C1CC2C3CCC(C3)C2C1'),
)
species(
label='chx',
structure=SMILES('C1CCCCC1'),
)
species(
label='chpen... | pierrelb/RMG-Py | examples/thermoEstimator/input_QM.py | Python | mit | 662 | [
"MOPAC"
] | ed9bb2d505ed1518d54e8e971e5618e047e9b51892698bfb39e104165392abba |
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