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# -*- coding: utf-8 -*-
r"""
TODO: Look at this file
http://www.lfd.uci.edu/~gohlke/code/transformations.py.html
# Sympy:
# >>> # https://groups.google.com/forum/#!topic/sympy/k1HnZK_bNNA
# >>> import vtool_ibeis as vt
# >>> import sympy
# >>> from sympy.abc import theta
# >>> x, y, a, c, d, sx... | Erotemic/vtool | vtool_ibeis/linalg.py | Python | apache-2.0 | 21,152 | [
"Gaussian"
] | e7a4d0974aafc7160a1c90e0be2f574c51a7568e8d3a0eb837dab69fb8593cc4 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2005 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Andrew I Baznikin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Ge... | Forage/Gramps | gramps/plugins/rel/rel_fi.py | Python | gpl-2.0 | 7,780 | [
"Brian"
] | c18545a6f3ee18ce8eb14f99c9ad63bf52e8e9f7ffedcc0d245f5abaf2a6a0ac |
class DataPoint(object):
""" A Ladybug data point
Attributes:
value :<flot>, <integer>, <string> based on type
isEpwData: A boolean that indicates if the data is from an epw
file. Valid range for epw file can be differnt. For example
Temperature rang... | antonszilasi/honeybeex | honeybeex/honeybee/ladybug/datatype.py | Python | gpl-3.0 | 7,115 | [
"EPW"
] | 582096baaf9e5d4ed9b7aaf0a3a4f9bcf28362e0146dc23e7c79e523b9cbfa82 |
#!/usr/bin/env python
# This code is licensed under the New BSD License
# 2009, Alexander Artemenko <svetlyak.40wt@gmail.com>
# For other contacts, visit http://aartemenko.com
from migrate.versioning.shell import main
main(repository='migrations')
| svetlyak40wt/gtdzen | gtdzen/migrations/manage.py | Python | bsd-3-clause | 250 | [
"VisIt"
] | 3a288247aff9c5caf132930364e652b7ff3f1aa88472517675a7226bbaa55da2 |
# -*- coding: utf-8 -*-
#
# hill_tononi_Vp.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | SepehrMN/nest-simulator | pynest/examples/spatial/hill_tononi_Vp.py | Python | gpl-2.0 | 38,623 | [
"Gaussian",
"NEURON"
] | 2866593341a0667e35beef7a0c9e09ec158c898a8df807e8ca91dbf186f32440 |
#****************************************************************************
# Copyright (C) 2013 SUNCAT
# This file is distributed under the terms of the
# GNU General Public License. See the file `COPYING'
# in the root directory of the present distribution,
# or http://www.gnu.org/copyleft/gpl.txt .
#**************... | chuanshi/ase-espresso | multiespresso.py | Python | gpl-3.0 | 3,940 | [
"ESPResSo"
] | bd68a678faddfa57444615c8c861e10976d01b303bfbf58b72365f129398d3fc |
# -*- coding: utf-8 -*-
"""
The MIT License (MIT)
Copyright (c) 2017 SML
Permission is hereby granted, free of charge, to any person obtaining a
copy of this software and associated documentation files (the "Software"),
to deal in the Software without restriction, including without limitation
the rights to use, copy... | Gr8z/Legend-Cogs | deck/deck.py | Python | mit | 34,881 | [
"VisIt"
] | 13beaa571918fa162e029d22bc4ebc40f0f17fe29dbaa368a4130835b71e2d2b |
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# d... | hguemar/cinder | cinder/flow_utils.py | Python | apache-2.0 | 6,587 | [
"VisIt"
] | 21f813e98eeecb59dbdaba613e53186ae25c4330ef02d329aefb5d48e43aca2c |
# -*- coding: utf-8 -*-
"""
***************************************************************************
dataobject.py
---------------------
Date : August 2012
Copyright : (C) 2012 by Victor Olaya
Email : volayaf at gmail dot com
****************************... | mhugo/QGIS | python/plugins/processing/tools/dataobjects.py | Python | gpl-2.0 | 8,309 | [
"NetCDF"
] | f4a9342670feecb4c5637f6eee8be1d7d8ced34d11962a6e72e9723564f16268 |
#!/usr/bin/python
__author__ = 'samim'
# Imports
import argparse
import time
import os
import errno
import subprocess
from cStringIO import StringIO
import numpy as np
import scipy.ndimage as nd
import PIL.Image
from google.protobuf import text_format
import caffe
#Loading DNN model
model_name = 'bvlc_googlenet'
#mo... | naeluh/DeepDreamAnim | dreamer.py | Python | mit | 10,389 | [
"Gaussian"
] | 5198f4d596007fc4ea181167f74cc5822df5eaa16c777d47dffcdaeaa9c3762c |
#!/usr/bin/env python3
"""
pylupdate parses python files to search for calls to pytson.tr resp
pytson.Translatable._tr to generate a Qt linguist translation file
These are the two valid usecases from module pytson:
class Translatable(object):
@classmethod
def _tr(cls, sourcetext, *, disambiguation="", n=-1, c... | pathmann/pyTSon | tools/pylupdate.py | Python | gpl-3.0 | 31,776 | [
"VisIt"
] | e75a9025d14cbebf263f9fee155a71203ab86dd6fd7116afdffa3577161d2045 |
#!/usr/bin/env python
import sys
import logging
import argparse
import pysam
def unalign(ifs,ofs,tags=None):
'''
Convert aligned bam IFS to unaligned bam OFS.
'''
# Generate a new read that we'll use as the base.
unaligned = pysam.AlignedRead()
# Set target reference and position to unknown.
unaligne... | WhiteLab/utils | python/bam/unalign.py | Python | apache-2.0 | 2,319 | [
"pysam"
] | b1ccdace470acf22be0b935ff100b71d20b75aa76dc76dc1169a97cbb2625d55 |
# -*- coding: utf-8 -*-
"""Mayavi/traits GUI for setting MRI fiducials."""
# Authors: Christian Brodbeck <christianbrodbeck@nyu.edu>
#
# License: BSD-3-Clause
import os
from mayavi.core.ui.mayavi_scene import MayaviScene
from mayavi.tools.mlab_scene_model import MlabSceneModel
import numpy as np
from pyface.api impo... | bloyl/mne-python | mne/gui/_fiducials_gui.py | Python | bsd-3-clause | 18,825 | [
"Mayavi"
] | afe124be64a5db23c0cff443c3f9ff22ffc90e5a920f6b82ce7a58c4078f2083 |
import numpy as np
from scipy.spatial.distance import pdist, squareform
from pysisyphus.calculators.Calculator import Calculator
class IDPPCalculator(Calculator):
def __init__(self, target):
self.target = squareform(target)
super().__init__(base_name="idpp")
def get_forces(self, atoms, co... | eljost/pysisyphus | pysisyphus/calculators/IDPPCalculator.py | Python | gpl-3.0 | 1,400 | [
"ASE"
] | 71327b72bbc61a3194b21b15354f361da780e73acdef4edaf1a3e162ab768059 |
"""
Spike train correlation plots
-----------------------------
.. autosummary::
:toctree: toctree/spike_train_correlation/
plot_corrcoef
plot_cross_correlation_histogram
"""
# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
# License: Modified BSD, see LICENSE.txt.txt for details.
fr... | INM-6/viziphant | viziphant/spike_train_correlation.py | Python | bsd-3-clause | 7,862 | [
"NEURON"
] | 7e3ee78fbf3d334ffc8cd2c91b015350726b2fdcd00dc5f53a6261b4de4d71c2 |
import praw
import time
import os
class RedditBot():
def __init__(self, parent=None):
super(RedditBot, self).__init__()
self.Init()
self.runBot()
def Custom_Init_Variables(self):
########################################################
################ Cha... | xvang/reddit-bots | Moose_Hunter_bot/reddit_bot_2.py | Python | unlicense | 4,248 | [
"MOOSE"
] | 6529a97f053efd2336b62f0e8e2ecbb0d309043261dd283f10fb00b3001efa0c |
#!/usr/bin/python
import unittest
import os
import random
import numpy as np
from pymatgen.core.structure import Structure
from pymatgen.core.lattice import Lattice
from pymatgen.core.surface import Slab, SlabGenerator, generate_all_slabs, \
get_symmetrically_distinct_miller_indices
from pymatgen.symmetry.group... | sonium0/pymatgen | pymatgen/core/tests/test_surface.py | Python | mit | 13,101 | [
"pymatgen"
] | 24e4b8c11a25b971868e9ca4c25ea3265f32ce3fe6840000a9b6abf01ec96c1c |
import itertools
import math
import sys
import numpy as np
import numpy.linalg
import functools
from pychemia import Structure, pcm_log
from pychemia.utils.mathematics import integral_gaussian
from pychemia.utils.periodic import atomic_number, covalent_radius, valence, atomic_symbol
from collections import OrderedDic... | MaterialsDiscovery/PyChemia | pychemia/analysis/analysis.py | Python | mit | 26,318 | [
"CRYSTAL"
] | 1d0b6f746627d62d9f3a8bf91bd006cd743afb6b575f14f856c1e40267649d29 |
"""Growing Neural Gas main file, for developers only."""
from numpy import *
from oldgraph.classes.graph import graph
winner_index = 0
winner_2nd_index = 0
setN = [] #:set of neuron weights
gr = graph() #:topology structure implemented by python-graph
T_winner = 0
T_2nd_winner = 0
accumulated = [1,1]
big_cl... | sbxzy/pygks | pygks/gng2.py | Python | bsd-3-clause | 7,610 | [
"NEURON"
] | 4c9e441f5ca5ee9f503697e001ac4432167edd4250aa0a86c53916c3b24cbf9f |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/grad/tduhf.py | Python | apache-2.0 | 11,956 | [
"PySCF"
] | 46b46c5a25bf9726cf589771012f275c56568b186057047e426addd9db1525fe |
# This is the main script to run disparity plasticity experiment.
#
# Copyright (C) 2010-2011 Huang Xin
#
# See LICENSE.TXT that came with this file.
import numpy as np
#from StimControl.LightStim.LightData import dictattr
from Experimenter.Experiments.Experiment import ExperimentConfig,Experiment,StimTimingExp,Restin... | chrox/RealTimeElectrophy | Experimenter/test/test_dsp_plasticity_rand_phase.py | Python | bsd-2-clause | 5,274 | [
"NEURON"
] | a08b641cf650fce7662194cac5f94c755cc773213c4e57fb5a4741f285364d21 |
"""Convert to and from Roman numerals"""
__author__ = "Mark Pilgrim (f8dy@diveintopython.org)"
__version__ = "1.4"
__date__ = "8 August 2001"
__copyright__ = """Copyright (c) 2001 Mark Pilgrim
This program is part of "Dive Into Python", a free Python tutorial for
experienced programmers. Visit http://diveint... | mfazekas/safaridriver | selenium/src/py/lib/roman.py | Python | apache-2.0 | 2,768 | [
"VisIt"
] | 1ce3434b394fbfcac8bc299d3b88156701f320b48d841dcd4adb86f407639856 |
#
# Copyright (c) 2009, Novartis Institutes for BioMedical Research Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyri... | ptosco/rdkit | Contrib/LEF/CreateFps.py | Python | bsd-3-clause | 4,608 | [
"RDKit"
] | 24d479d964a7f066107573861307bb115edd4377e233d3c03745d4e047ba4004 |
import ast as _ast
import cypy
import cypy.astx as astx
import clq
from clq import TypeResolutionError
import clq.backends.base_c as base_c
_globals = globals() # used to create lists of types below
################################################################################
# Types
#############################... | cyrus-/ace | clq/backends/opencl/__init__.py | Python | lgpl-3.0 | 87,758 | [
"VisIt"
] | 749e81fef09fce84c9a6811e1c3c318d4e1b931b6deecabe099a262aa25cd947 |
from __future__ import print_function
from six import iteritems
from six.moves import range
import os
from numpy import arange, mean, amax, amin, vstack, zeros, unique, where, sqrt
import vtk
from vtk import vtkTriangle
from vtk.util.numpy_support import numpy_to_vtk
from pyNastran.gui.gui_objects.gui_res... | saullocastro/pyNastran | pyNastran/converters/cart3d/cart3d_io.py | Python | lgpl-3.0 | 19,298 | [
"VTK"
] | 1ec82a294d2419faa945323977ad697a58a396b7e4b7aab0acac79cfed2a9751 |
# coding: utf-8
# ## FFT solver for 1D Gross-Pitaevski equation
# We look for the complex function $\psi(x)$ satisfying the GP equation
#
#
# $-\frac{1}{2}(i\partial_x - \Omega)^2\psi+g|\psi|^2\psi = \mu \psi$,
#
# with periodic boundary conditions.
# Import libraries and general definitions
# In[1]:
import nu... | brunojulia/ultracoldUB | gpe_fft_v0.py | Python | gpl-3.0 | 6,795 | [
"Gaussian"
] | 2b7cec8910872cf9e3ce089cb4282c11ab6ce154869cdc981bd11bc1cb7f35d3 |
#------------------------------------------------------
# Create a rom memory with the given string stored
#------------------------------------------------------
# (c) BQ october 2015. Written by Juan gonzalez (obijuan)
#--------------------------------------------------------
##-- String to store into the rom
cad = ... | Obijuan/open-fpga-verilog-tutorial | tutorial/ICESTICK/T28-ram/char2rom.py | Python | gpl-2.0 | 454 | [
"ASE"
] | 1383b6998f4d8d9d3619f9d04efdb0f53dd617c17083af13cc082babfb9ba8e9 |
#!/usr/bin/python
#coding=utf8
import Pmw
from Tkinter import *
from tkFileDialog import askdirectory
import string
import pafy
from pygoogle import pygoogle
import webbrowser
import urllib2
import sys
import csv
import os
#------------------------------------------------------------------------------#
# ... | jasongi/pysongscraper | pysonggui.py | Python | gpl-2.0 | 13,676 | [
"VisIt"
] | 228e4a513c2418c277a0913cefdca0567661fb254fd8ef9bd7ba9f1c53cd7956 |
# -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "L... | saltstar/spark | python/pyspark/ml/tests.py | Python | apache-2.0 | 101,783 | [
"Gaussian"
] | 6c2c77ae5571b600435c54517a2de6fd6892672d7212f80e45829a8d005cb217 |
# -*- coding: utf-8 -*-
class Charset(object):
common_name = 'NotoSansSymbols-Regular'
native_name = ''
def glyphs(self):
chars = []
chars.append(0x0000) #uniFEFF ????
chars.append(0x000D) #uni000D ????
chars.append(0x0020) #uni00A0 SPACE
chars.append(0x20A0) #... | davelab6/pyfontaine | fontaine/charsets/noto_chars/notosanssymbols_regular.py | Python | gpl-3.0 | 537,286 | [
"Bowtie",
"FLEUR"
] | 77d35932c0ee23158ca51ab1f00737e2386a3c0b1918592fd3300e2a60bf5927 |
#
# Copyright (c) 2001 - 2014 The SCons Foundation
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, modify, merge... | engineer0x47/SCONS | engine/SCons/Taskmaster.py | Python | mit | 40,536 | [
"VisIt"
] | 29dcb86a26b4f85cc371c2f226ca1fbe0a10b89ea78cec05848a57b23059da98 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Christoph Klein
# Contributors:
#
# MDTraj is free software: y... | leeping/mdtraj | tests/test_rdf.py | Python | lgpl-2.1 | 3,558 | [
"Gromacs",
"MDTraj"
] | 4769f64f442e23ab3e1b8e09dcbfd3d9cd2478d8aa3c21cc16976be6ee32aa51 |
tests = [
("python", "UnitTestMolStandardize.py", {})
]
longTests = []
if __name__ == '__main__':
import sys
from rdkit import TestRunner
failed, tests = TestRunner.RunScript('test_list.py', 0, 1)
sys.exit(len(failed))
| bp-kelley/rdkit | rdkit/Chem/MolStandardize/test_list.py | Python | bsd-3-clause | 241 | [
"RDKit"
] | b35961f35cf160a4ad6c6e35baba274e30bf840bb2bfe56903b5ca3ff7bb6831 |
# test rasl inner loop on simulated data
#
# pylint:disable=import-error
from __future__ import division, print_function
import numpy as np
from rasl.inner import inner_ialm
from rasl import (warp_image_gradient, EuclideanTransform,
SimilarityTransform, AffineTransform, ProjectiveTransform)
def setup... | welch/rasl | tests/inner_test.py | Python | mit | 4,843 | [
"Gaussian"
] | 939bc9109f0c05cd2058aa318a6442cf5f50cb7e6e64cf069ffa1c829a8effe9 |
import re
def fun(s):
m = re.fullmatch('([a-zA-Z0-9_-])+@([a-zA-Z0-9])+\.([a-zA-Z0-9]){1,3}', s)
return m is not None
def filter_mail(emails):
return list(filter(fun, emails))
if __name__ == "__main__":
tests = [
(
['lara@hackerrank.com', 'brian-23@hackerrank.com',
... | Moggi/python-playground | HRank/email_filter.py | Python | gpl-2.0 | 954 | [
"Brian"
] | f01e1d19803218ebf53ef1d423b4a033d7962f59f593c78e7518fa3d6b496f9b |
#
# Nearest Neighbor Classifier
#
#
# Code file for the book Programmer's Guide to Data Mining
# http://guidetodatamining.com
#
# Ron Zacharski
#
## I am trying to make the classifier more general purpose
## by reading the data from a file.
## Each line of the file contains tab separated fields.
## The f... | ChaoSBYNN/Tools | Data Mining/A Programmer's Guide to Data Mining/code/chapter-4/nearestNeighborClassifier.py | Python | gpl-3.0 | 7,804 | [
"CRYSTAL"
] | dac4dcd07563097766e8cab9d1753282fc20d153070717b2bb9b68fdc070454c |
# found at: https://pythonspot.com/json-encoding-and-decoding-with-python/
import json
# Pretty printing
# ===============
# If you want to display JSON data you can use the json.dumps() function.
json_data = '{"name": "Brian", "city": "Seattle"}'
json_obj = json.loads(json_data)
print(json.dumps(json_obj, sort_keys=... | uherting/RasPi | JSON/json_pretty_printing.py | Python | gpl-2.0 | 337 | [
"Brian"
] | 4a48205e1075be7e090112731a8114fb0de999c19dd0e15de837103dcdca24cd |
# Copyright 2021 Google LLC.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google-research/vmoe | vmoe/nn/ensemble_routing_test.py | Python | apache-2.0 | 8,066 | [
"MOE"
] | 13f3ec6f989942b0a912ce780446a6834998bbed528865e390ef6d06442bae90 |
from scripts.db_shell import *
from galaxy.util.bunch import Bunch
from galaxy.security import GalaxyRBACAgent
from sqlalchemy.orm import sessionmaker
from sqlalchemy import *
import argparse
bunch = Bunch( **globals() )
engine = create_engine('postgres://galaxy:galaxy@localhost:5432/galaxy')
bunch.session = sessionmak... | jmchilton/docker-recipes | galaxy/create_galaxy_user.py | Python | mit | 1,787 | [
"Galaxy"
] | 4dad18c855919061b50987b7ea4a6eb4be74b55c061a7c2f3302bafa62c6f029 |
"""Extract reference documentation from the NumPy source tree.
"""
# This code is copied directly from numpy
# numpy / doc / sphinxext / docscrape.py
# Copyright (c) 2005-2011, NumPy Developers.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted ... | leeping/mdtraj | mdtraj/testing/docscrape.py | Python | lgpl-2.1 | 17,166 | [
"MDTraj"
] | d1f04cdcaaac6e284833967962480e35100092ddd679649258dafdd0af81b3f2 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | xsm110/Apache-Beam | sdks/python/apache_beam/pipeline_test.py | Python | apache-2.0 | 15,829 | [
"VisIt"
] | bc6078e0d66d0afad4b6c0e45c1c0c79013e3c39b832185f2b73c4c9bba8739e |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""Tests for the Google Chrome cookie database plugin."""
import unittest
from plaso.formatters import chrome_cookies # pylint: disable=unused-import
from plaso.lib import eventdata
from plaso.lib import timelib
from plaso.parsers.sqlite_plugins import chrome_cookies
from t... | dc3-plaso/plaso | tests/parsers/sqlite_plugins/chrome_cookies.py | Python | apache-2.0 | 4,456 | [
"VisIt"
] | cc4eb6e4ce630cb7fd203ba9171c83e6b0f7c57fffe777b8f60fb636b49f7374 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
"""
Versioneer 2
============
* Like a rocketeer, but for versions!
* Based on https://github.com/warner/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, and pypy
* Edited by Ryan Dwyer
This is a... | ryanpdwyer/versioneer2 | versioneer.py | Python | mit | 38,234 | [
"Brian"
] | 31c804f4d61a67037de246fee3a2ef4de177527b8bb70cf28e35facbf8e22767 |
"""
calculate coverage across a list of regions
"""
import os
import os.path as op
import yaml
from argparse import ArgumentParser
from ichwrapper import cluster, arguments
from bcbio.install import _get_data_dir
from bcbio.utils import safe_makedir
from vardict.run import trymemory
def _update_algorithm(data, res... | lpantano/eggs | vardict_debug/scripts/run-vardict.py | Python | gpl-2.0 | 1,737 | [
"Galaxy"
] | 47d0f03587011443265b960e086fc275769dcb3a0f3fe2e8cfc204db8b3a7df0 |
########################################################################
# $HeadURL$
# File : SiteSEMapping.py
########################################################################
""" The SiteSEMapping module performs the necessary CS gymnastics to
resolve site and SE combinations. These manipulations are... | sposs/DIRAC | Core/Utilities/SiteSEMapping.py | Python | gpl-3.0 | 4,850 | [
"DIRAC"
] | 6511aefea4e66558b125368121d450857117722ea6ce9ea58bc8d125b8ac4631 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2007-2009 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Adam Stein <adam@csh.rit.edu>
#
# This program is free software; you can redistribute it and/or modify
# it u... | Forage/Gramps | gramps/plugins/docgen/psdrawdoc.py | Python | gpl-2.0 | 14,036 | [
"Brian"
] | 43470f2815a6798272bf1bb640864c2c7a457874c94d3481d541bba5797dcec3 |
########################################################################
# File : Utilities.py
# Author : Federico Stagni
########################################################################
"""
Utilities for Transformation system
"""
__RCSID__ = "$Id$"
import ast
import random
from DIRAC import S_OK, S_ERROR, ... | marcelovilaca/DIRAC | TransformationSystem/Client/Utilities.py | Python | gpl-3.0 | 17,448 | [
"DIRAC"
] | dfcd7fba960b6bff39c6545fc8727b7bdfde955540717d0177e3e10fe072c98e |
#!/usr/bin/env python
"""Universal feed parser
Handles RSS 0.9x, RSS 1.0, RSS 2.0, CDF, Atom 0.3, and Atom 1.0 feeds
Visit http://feedparser.org/ for the latest version
Visit http://feedparser.org/docs/ for the latest documentation
Required: Python 2.1 or later
Recommended: Python 2.3 or later
Recommended: CJKCodecs... | MehmetNuri/ozgurlukicin | util/feedparser.py | Python | gpl-3.0 | 123,318 | [
"NetCDF",
"VisIt"
] | 48e1231c44988432fbbaa241ce4eaafa54e222da7d41cef38987462363a74b44 |
from webob import Response
import urllib2
import socket
import base64
from urlparse import urlparse, urlunparse
import urllib
def get_url(url, method='GET', data=None, client_id=None, user_id=None, api_key=None, timeout=5,
get_body=True, extra_headers=None):
"""Performs a synchronous url call and retur... | cackharot/opensaas | opensaas/library/http_helpers.py | Python | gpl-2.0 | 2,134 | [
"VisIt"
] | 0e5b90b0e3d716827170112708f3851e301bccc2e2319629d9f8d8a5b3eefe35 |
#!/usr/bin/env python
################################################################################
#
# make_aims.py
#
# Creates a standard control.in template file using a specified geometry.in
# and species directory.
#
################################################################################
#
# Copyright... | kaneod/physics | python/make_aims.py | Python | gpl-3.0 | 2,885 | [
"FHI-aims"
] | 10bc98536863e6c06f68c2628ad19b382886340be980f4aabceb2c886d501fe8 |
import json
import hive
import logging
import time
from oauth_hook import OAuthHook
import socket
import requests
import urlparse
class NetworkError(Exception):
pass
class ServerError(Exception):
pass
class AuthError(Exception):
pass
class BotQueueAPI():
version = '0.4'
name = 'Bumblebee'
localip =... | qharley/BotQueue | bumblebee/botqueueapi.py | Python | gpl-3.0 | 11,185 | [
"VisIt"
] | 9038d37c5849d123380465c9859cb0849fcd8a9075e5c3fcccd641ff8b28409b |
"""Kernels for Gaussian process regression and classification.
The kernels in this module allow kernel-engineering, i.e., they can be
combined via the "+" and "*" operators or be exponentiated with a scalar
via "**". These sum and product expressions can also contain scalar values,
which are automatically converted to... | vortex-ape/scikit-learn | sklearn/gaussian_process/kernels.py | Python | bsd-3-clause | 67,657 | [
"Gaussian"
] | a70c951280a37547abf7d45932043b2b95701ffc37db6820044210c9b2fc1b79 |
"""Regression tests for testing CPyDock scoring function"""
import shutil
import os
import filecmp
from regression import RegressionTest
class TestRegressionPyDockShort(RegressionTest):
def setup(self):
self.path = os.path.dirname(os.path.realpath(__file__))
self.test_path = self.path + '/scrat... | brianjimenez/lightdock | bin/test/test_pydock.py | Python | gpl-3.0 | 6,261 | [
"Amber"
] | 2dd9b9f477c6a28738f3dfbd33a9ac1494a2c1ed12cd26a7daa857072505dce7 |
import inspect
import asplib.asp.codegen.python_ast as ast
import asplib.asp.codegen.cpp_ast as cpp_ast
import asplib.asp.codegen.ast_tools as ast_tools
import codepy.cgen
import asplib.asp.jit.asp_module as asp_module
from collections import namedtuple
class IfNotDefined(cpp_ast.Generable):
"""
A generable A... | harperj/KDTSpecializer | pcb_operator.py | Python | bsd-3-clause | 12,550 | [
"VisIt"
] | 08fa5a1aa7ce80dd614d3a6695d5713fac0e6c98e878765489445b06570617bf |
#!/usr/bin/env python
# Copyright (C) 2012 Tianyang Li
# tmy1018@gmail.com
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any lat... | tianyang-li/de-novo-metatranscriptome-analysis--the-uniform-model | play/show_start_pos_0.py | Python | gpl-3.0 | 1,414 | [
"HTSeq"
] | 5349d5a6d83b3927b35de1a076b0fdc492b7720058efa30da01f62e2d7440c54 |
'''
synbiochem (c) University of Manchester 2015
synbiochem is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
# pylint: disable=no-member
# pylint: disable=too-many-public-methods
import os
import tempfile
import unittest
from... | synbiochem/synbiochem-py | synbiochem/utils/test/test_sbol_utils.py | Python | mit | 986 | [
"VisIt"
] | 26f85f2151257ddf9b2dba767849a2f5b5dc2162c68c2427790e4f74a007565b |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | Jc2k/libcloudcore | libcloudcore/serializers/json.py | Python | apache-2.0 | 3,509 | [
"VisIt"
] | 1a8b862867d65faa80a92bbf76c545f0bc0b38a0efcb9a63b14069c8b939c891 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
#
# Project: wb97xdDsC-optim
# FileName: computation
# Creation: Jul 16, 2015
#
"""Example Google style docstrings.
This module demonstrates documentation as specified by the `Google Python
Style Guide`_. Docstrings may extend over multiple lines. Sections are created... | grhawk/wb97xdDsC-optim | mainOptimTest/master/computation.py | Python | gpl-2.0 | 10,467 | [
"GAMESS"
] | 5174797195ed264da2c7608b8613a862f7e274881c3d28ea7879c5e77f632b5c |
import constant
from model import *
from potential import *
__all__ = 'PreSynapse', 'PostSynapse'
class PreSynapse:
def __init__(self, model, post):
self.model = model
self.post = post
def activate(self):
self.post.activate()
class PostSynapse:
def __init__(self, neuron):
... | lennart96/neurons | synapse.py | Python | isc | 1,972 | [
"NEURON"
] | 7b40d1b1d45a8ec224048a3bf16a254c5e5d0bf1638913fdd7fee3d5d4d5977e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
License: For personnal, educationnal, and research purpose, this software is
provided under the Gnu GPL (V.3) license. To use this software in
commercial application, please contact the authors.
Authors: Jaroslaw Zygierewicz (jarekz@fuw.edu.pl),
... | britodasilva/pyhfo | pyhfo/core/book_reader.py | Python | mit | 4,490 | [
"DIRAC"
] | 541bd98f6b7572dac8e1a8306dafcc9555baea35e35e68ca7e5d4340f4f3f8bb |
__author__ = 'amarch'
# -*- coding: utf-8 -*-
from utils import strutils as infoutils
import itertools
from scipy.integrate import *
from RotationCurve import *
from Galaxy import *
from utils import strutils as infoutils
import itertools
import copy
from RadialToAzimuthalRatioHandler import *
from RadialToVerticalR... | Amarchuk/2FInstability | core/VelocityEllipsoidHandler.py | Python | gpl-3.0 | 5,851 | [
"Galaxy"
] | fca2b0cdecb8ea19b67ee35e6ef848243f13cec70f28ec0e05eeb299acea08e4 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-aiplatform | tests/unit/gapic/aiplatform_v1/test_prediction_service.py | Python | apache-2.0 | 70,918 | [
"Octopus"
] | 695f0eea87376a88f0c18dc83bdb9ccfa07626f589471041988eab42652917de |
import subprocess
import sys
import os
import linecache
import re
import numpy as np
if len(sys.argv)<3:
print 'An input file and setup file are needed as arguments'
print 'Input and setup files must be stored in folder RR_fitter/input/'
print 'Input file path name must be entered before setup file name'
print 'Ex... | elizabethswann/RR_fitter | run_RR_fitter.py | Python | mit | 2,350 | [
"Galaxy"
] | 43c8d3bdaa104154e2628fb8bc0f85ecc75f37ba4694ba67d7c0c9828f87515b |
import time
import lmdb
import struct
import logging
import hashlib
import itertools
import synapse.glob as s_glob
import synapse.common as s_common
import synapse.eventbus as s_eventbus
import synapse.lib.net as s_net
import synapse.lib.cell as s_cell
import synapse.lib.lmdb as s_lmdb
import synapse.lib.const as s_c... | vivisect/synapse | synapse/axon.py | Python | apache-2.0 | 22,767 | [
"NEURON"
] | 6c1c5ca577e02b629db8fdaba2c733ca3b84df79ac8caf7a78baa9703a2e1418 |
# Copyright (c) 2009, Google Inc. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the... | EpicCM/SPH-D700-Kernel | external/webkit/WebKitTools/Scripts/webkitpy/committers.py | Python | gpl-2.0 | 13,988 | [
"Brian"
] | d029e90cabd13215b365d02a9c458b742b25c1d4ee9e4164a07c60def6a6d01b |
"""
Contains tests to check a particular script's results or speed have
not changed.
Buildbot shows how to run all these tests.
$Id$
"""
__version__='$Revision$'
import pickle, copy, __main__, timeit, os, os.path, socket, cPickle, inspect, traceback, tempfile, shutil
from numpy.testing import assert_array_equal, a... | ioam/svn-history | topo/tests/test_script.py | Python | bsd-3-clause | 25,712 | [
"Gaussian"
] | eb37828c6445146ca7bfd47e6465dd77819fdb5b24fc5a3d2634c2cf467b1e56 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | dgasmith/psi4 | psi4/share/psi4/databases/RSE42.py | Python | lgpl-3.0 | 77,097 | [
"Psi4"
] | 6161edb7d0eaf622536f51a0eb0d015243ec20144ca193db9a8647cc1879c74b |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import unittest
import os
import json
from io import open
import matplotlib
matplotlib.use("pdf") # Use non-graphical display backend during test.
from pyma... | matk86/pymatgen | pymatgen/electronic_structure/tests/test_plotter.py | Python | mit | 7,139 | [
"VASP",
"pymatgen"
] | e37789d5700aa6f6ff1a0918ad2acc738df8ae097ad29a4d2dababce37cb51e5 |
from __future__ import print_function
import networkx as nx
import argparse
import multiprocessing
from rdkit import Chem
NUM_PROCESSES = 8
def get_arguments():
parser = argparse.ArgumentParser(description='Convert an rdkit Mol to nx graph, preserving chemical attributes')
parser.add_argument('smiles', type=... | dakoner/keras-molecules | convert_rdkit_to_networkx.py | Python | mit | 3,031 | [
"RDKit"
] | 0cf87e6ca5010721328b55311823292df1a5b73468c2c135a774ed6cdd47fafa |
""" The Notification service provides a toolkit to contact people via email
(eventually SMS etc.) to trigger some actions.
The original motivation for this is due to some sites restricting the
sending of email but it is useful for e.g. crash reports to get to their
destination.
Another use-case is... | andresailer/DIRAC | FrameworkSystem/Service/NotificationHandler.py | Python | gpl-3.0 | 10,897 | [
"DIRAC"
] | 9018f1e3fd16c16dd48d099716ba126610d23e59e45eae7bb6297c35629b4127 |
#Copyright Aksyonov D.A
from __future__ import division, unicode_literals, absolute_import
import shelve, sys, datetime, shutil, tempfile, os, json, re, glob
import json
try:
import pandas as pd
except:
print('no pandas')
from siman import header
from siman.header import runBash, printlog
from siman.small_f... | dimonaks/siman | siman/database.py | Python | gpl-2.0 | 20,063 | [
"pymatgen"
] | e4bf638388e067fd83d1309f3017423780a911601576154edaa6aaa3d4ee5511 |
#!/usr/bin/env python
# Install.py tool to build the GPU library
# used to automate the steps described in the README file in this dir
from __future__ import print_function
import sys,os,subprocess
# help message
help = """
Syntax from src dir: make lib-gpu args="-m machine -h hdir -a arch -p precision -e esuffix -... | jag1g13/lammps | lib/gpu/Install.py | Python | gpl-2.0 | 5,201 | [
"LAMMPS"
] | f9de8d4adb1ed9986267eaa8c143c62fdd1b3484bdf01feaa8b3c08caae82c75 |
"""
Script entry point
"""
from src.calrissian.particle_vector_n_network_local_conv4 import ParticleVectorNLocalConvolution4Network
from src.calrissian.layers.particle_vector_n_local_conv4 import ParticleVectorNLocalConvolution4
from src.calrissian.layers.particle_vector_n_local_conv4 import ParticleVectorNLocalConvol... | awlange/brainsparks | tests/particle_vector_n_local_conv4_test.py | Python | mit | 13,564 | [
"Gaussian"
] | 8e9fd8ed5e9ba591509ce673895e221afe7671d9d3ea5573218880016e4fb9e3 |
__author__ = "John D. Chodera, Frank Noe"
__copyright__ = "Copyright 2015, John D. Chodera and Frank Noe"
__credits__ = ["John D. Chodera", "Frank Noe"]
__license__ = "LGPL"
__maintainer__ = "John D. Chodera, Frank Noe"
__email__="jchodera AT gmail DOT com, frank DOT noe AT fu-berlin DOT de"
import numpy as np
from b... | bhmm/legacy-bhmm-force-spectroscopy-manuscript | bhmm/output_models/gaussian.py | Python | lgpl-3.0 | 17,938 | [
"Gaussian"
] | 35a9233e40f0b928ea11836dec24dc3f8b22d21ea1b6b6cc06f69ca6b94cfde6 |
from check_grad import check_grad
from utils import *
from logistic import *
import matplotlib.pyplot as plt
def run_logistic_regression(hyperparameters):
# TODO specify training data
train_inputs, train_targets = load_train_small()
valid_inputs, valid_targets = load_valid()
test_inputs, test_target... | ouyangyike/Machine-Learning-and-Data-Mining | Logistic Regression/logistic_regression_template5.py | Python | mit | 3,770 | [
"Gaussian"
] | 1f3764488fc2c783cee8480be62989e9bcb0b005f957b3f20cb385d33d72437e |
'''PipelinePeakCalling.py - Tasks associated with pipeline_peakcalling
======================================================================
One set of functions runs peak callers and uploads the called peaks
into the database. The functions follow the following naming convention:
runXXX()
run a certain peak ca... | CGATOxford/CGATPipelines | CGATPipelines/PipelineIntervals.py | Python | mit | 92,375 | [
"pysam"
] | 828fcb31d5f25dec5e9a478177795fb147b020c994dff8dd29f3c307e4680927 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
The borg package contains modules that assimilate large quantities of data into
pymatgen objects for analysis.
"""
| gVallverdu/pymatgen | pymatgen/apps/borg/__init__.py | Python | mit | 229 | [
"pymatgen"
] | 87c7f9f2189e88d34bc6d31f7266764877a206768a8dbf95c8d3bb95eafb42e7 |
"""
CLASS INFO
-------------------------------------------------------------------------------------------
Clustering class contains every method that is necessary for creating,exporting and
evaluating clusters. Inherits the Dataset/Dataset_transformations which makes it indepedent
of data origin and str... | iaklampanos/bde-pilot-2 | backend/Clustering.py | Python | apache-2.0 | 13,505 | [
"Gaussian",
"NetCDF"
] | dfed1b6791db4e65f175a9d0fe9657618cc186c760fe4dd1c8fb546f01b76f31 |
#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU ... | fabio-otsuka/invesalius3 | invesalius/reader/others_reader.py | Python | gpl-2.0 | 1,892 | [
"VTK"
] | 94bfe03d1777b573128bc2a92ef1cefaea3355770b223aca1ff1745849085d2b |
"""WSGI Flask-app for browsing a database.
You can launch Flask's local webserver like this::
$ ase-db abc.db -w
For a real webserver, you need to set the $ASE_DB_APP_CONFIG environment
variable to point to a configuration file like this::
ASE_DB_NAME = '/path/to/db-file/abc.db'
ASE_DB_HOMEP... | suttond/MODOI | ase/db/app.py | Python | lgpl-3.0 | 7,617 | [
"ASE"
] | b3d029e6b29b7dddb221187eba05d522964d6de24b4bd5e234270254ad252a6f |
#!/usr/bin/env python
# -*- coding: iso-8859-1 -*-
###########################################################################
# ... | cgchemlab/chemlab | examples/atrp_lj/polymer_melt.py | Python | gpl-3.0 | 6,565 | [
"ESPResSo"
] | b26d65f611187738ffb5cd086eb987c3c00c9f890eca81747c7f5a6fbda86480 |
# Copyright 2014 Mark Chilenski
# This program is distributed under the terms of the GNU General Purpose License (GPL).
# Refer to http://www.gnu.org/licenses/gpl.txt
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | markchil/profiletools | profiletools/CMod.py | Python | gpl-3.0 | 109,376 | [
"Gaussian",
"NetCDF"
] | 01d4c25dbaa60b18d2fdbffe91bb18f7e8cb3f9f8fb2cce1c0ecc8846e9147e7 |
# $Id$
# Hop --- a framework to analyze solvation dynamics from MD simulations
# Copyright (c) 2009 Oliver Beckstein <orbeckst@gmail.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either... | iwelland/hop | hop/graph.py | Python | lgpl-3.0 | 126,271 | [
"Biopython",
"CHARMM",
"MDAnalysis",
"VMD"
] | 8d0b050de47ee390f1b4fd76bde6dd1d80bc95d40591fe64e45af6b07ec6b879 |
import sys
import os
import types
import threading
import time
from DIRAC import gLogger
from DIRAC.Core.Utilities.DIRACSingleton import DIRACSingleton
from DIRAC.ConfigurationSystem.Client.Helpers.CSGlobals import Extensions
class Devloader( object ):
__metaclass__ = DIRACSingleton
def __init__( self ):
se... | Sbalbp/DIRAC | Core/Utilities/Devloader.py | Python | gpl-3.0 | 2,381 | [
"DIRAC"
] | 04ba10a6f77606bdf3cdb22f54097c7a689e28f0596f002aa5499e77ef0e00f0 |
# -*- coding: utf-8 -*-
"""
sphinx.writers.texinfo
~~~~~~~~~~~~~~~~~~~~~~
Custom docutils writer for Texinfo.
:copyright: Copyright 2007-2016 by the Sphinx team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
import re
import textwrap
from os import path
import warnings
from six import... | neerajvashistha/pa-dude | lib/python2.7/site-packages/sphinx/writers/texinfo.py | Python | mit | 46,798 | [
"VisIt"
] | 664fd34dd1836c0ccef2137ba84b4765c6d5e7ec105aa0f6ce445eda4c6b9b4e |
"""SCons.Util
Various utility functions go here.
"""
#
# __COPYRIGHT__
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use... | timj/scons | src/engine/SCons/Util.py | Python | mit | 50,962 | [
"VisIt"
] | bae1825629d60e542ecaaa173c18bdf27f068e2030695236b7af148babda1d0c |
from datetime import datetime, timedelta
from typing import List
import warnings
from dateutil.relativedelta import FR, MO, SA, SU, TH, TU, WE # noqa
import numpy as np
from pandas.errors import PerformanceWarning
from pandas import DateOffset, Series, Timestamp, date_range
from pandas.tseries.offsets import Day, ... | cbertinato/pandas | pandas/tseries/holiday.py | Python | bsd-3-clause | 16,245 | [
"COLUMBUS"
] | da68de356ff63be6d3781d83181c7b2e0e21e67c46a42fa6df9bbdd4b3e88f57 |
import unittest
from vivisect.const import SYMT_CONST
from vivisect.symboliks.common import Arg, Var, Const, Mem, Call, \
o_add, o_sub, o_xor, o_and, o_or, \
evalSymbolik
def walkTree_cb(path, cur, ctx):
ctx['path'].append(cur)
class ... | bat-serjo/vivisect | vivisect/symboliks/tests/test_walkTree.py | Python | apache-2.0 | 23,017 | [
"VisIt"
] | 72e1c725f2bafa897563d966fbb377d8e2a851b92f6b85ddbeec0705f14983c6 |
# Copyright 2003-2008 by Leighton Pritchard. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# Contact: Leighton Pritchard, Scottish Crop Research Institute,
# ... | zjuchenyuan/BioWeb | Lib/Bio/Graphics/GenomeDiagram/_FeatureSet.py | Python | mit | 8,609 | [
"Biopython"
] | 974605799ce7c7908a4b7a93a0c590e8eec392c340404ec3b93643ecfe866e00 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | SamStudio8/scikit-bio | skbio/io/format/tests/test_phylip.py | Python | bsd-3-clause | 9,695 | [
"scikit-bio"
] | 6fb771b7df45b2056ca09337b268c63dbb847c38ee7502f1bfd6a2e9e6341af2 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2010 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your optio... | pmghalvorsen/gramps_branch | gramps/gui/user.py | Python | gpl-2.0 | 5,178 | [
"Brian"
] | aac26dd489068e6934cecc2e20a03eb89909942d9d3861d615de060b08a13cbd |
# coding: utf-8
from __future__ import unicode_literals
import base64
import datetime
import hashlib
import json
import netrc
import os
import random
import re
import socket
import sys
import time
import math
from ..compat import (
compat_cookiejar,
compat_cookies,
compat_etree_fromstring,
compat_getp... | epitron/youtube-dl | youtube_dl/extractor/common.py | Python | unlicense | 132,429 | [
"VisIt"
] | 60823d26d89c6f961f796ff3b99d2e1dca30d2e8e79f4b519bf5b4bcfdf80aef |
import re
from django.contrib.auth import get_user_model
from django.core import mail
from django.shortcuts import reverse
from django.test import Client, TestCase
from .models import Profile
User = get_user_model()
class ViewTests(TestCase):
@classmethod
def setUpTestData(cls):
cls.client = Client... | cts-admin/cts | cts/accounts/tests.py | Python | gpl-3.0 | 5,845 | [
"VisIt"
] | a4763d05d432a46f968309da30cf4b4eee79da31f46ccd05ab7783ebb1e409fb |
# Copyright (C) 2003 CAMP
# Please see the accompanying LICENSE file for further information.
"""This module provides all the classes and functions associated with the
evaluation of exact exchange.
"""
import numpy as np
from gpaw.xc import XC
from gpaw.xc.kernel import XCNull
from gpaw.xc.functional import XCFunct... | robwarm/gpaw-symm | gpaw/xc/hybrid.py | Python | gpl-3.0 | 17,666 | [
"ASE",
"GPAW"
] | f50672339afe66c9677f696239e1851cf4e3d3eceb077774d8a0f560141133cd |
import MySQLdb
import time
import random
#import threading
import db_conf
import sys
class pham_comparator:
def compare_B_to_C(self, pB, pC):
for b_pham in pB.phams:
for c_pham in pC.phams:
match = 0
... | byuphamerator/phamerator-dev | phamerator/pham_comparator.py | Python | gpl-2.0 | 1,929 | [
"BLAST"
] | 4ccb54d72e00db58f928bfbadd86e22339bae10f48600584a7d11041601eec9e |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/bug_1117098 | openlp/core/utils/__init__.py | Python | gpl-2.0 | 15,825 | [
"Brian"
] | 5dd2f912fead5f9be9ecf76d665fa0842bfa484cef4ae03afee44cc2a2d1c9f3 |
import inspect
import logging
import weakref
import uuid
from types import MethodType
import sys
if sys.version_info > (3, ):
long = int
unicode = str
logger = logging.getLogger(__name__)
try:
getfullargspec = inspect.getfullargspec
except AttributeError:
getfullargspec = inspect.getargspec
class S... | openpathsampling/openpathsampling | openpathsampling/netcdfplus/base.py | Python | mit | 12,401 | [
"NetCDF"
] | c6cc7e383b275db4732f271cb1443b47ebc62cd4ad7e7c7304eea137f5c82cb2 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
A Flow is a container for Works, and works consist of tasks.
Flows are the final objects that can be dumped directly to a pickle file on disk
Flows are executed using abirun (abipy).
"""
from __future__ impo... | johnson1228/pymatgen | pymatgen/io/abinit/flows.py | Python | mit | 109,644 | [
"ABINIT",
"pymatgen"
] | c71c392d7a8d7cd789958860cf08fab948d415fc88e8d992750f4a2e4b120fef |
# coding=utf-8
from __future__ import absolute_import
from flask import url_for
from flask_login import current_user
import pytest
from firefly.six import unicode
from firefly.models.user import User
from firefly.views.api.consts import OK
@pytest.mark.usefixtures('client_class')
class TestUser:
def setup(self)... | mozillazg/firefly | tests/test_user.py | Python | mit | 2,460 | [
"Firefly"
] | 18e9d7509bb7cb4d5bcf485ceaee664625c9c34d8fdc7b3b252c737e28da14a1 |
__author__ = 'yanbo'
HEROES = [{'dt_name': 'DT_DOTA_Unit_Hero_AntiMage',
'id': 2,
'localized_name': 'Anti-Mage',
'name': 'npc_dota_hero_antimage'},
{'dt_name': 'DT_DOTA_Unit_Hero_Axe',
'id': 3,
'localized_name': 'Axe',
'name': 'npc_dota_hero_axe'},
{'dt_name': 'DT_DOTA_Unit... | Morijarti/dota-2-heatmap | heroes.py | Python | mit | 15,331 | [
"CRYSTAL",
"TINKER"
] | 4109a803e1d8226f46b6d495173f4fab982025f9735034cbbd2b522282453813 |
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