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# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS Instructor Dashboard.
"""
import time
from flaky import flaky
from nose.plugins.attrib import attr
from bok_choy.promise import EmptyPromise
from ..helpers import UniqueCourseTest, get_modal_alert, EventsTestMixin
from ...pages.common.logout import LogoutPage
... | inares/edx-platform | common/test/acceptance/tests/lms/test_lms_instructor_dashboard.py | Python | agpl-3.0 | 35,574 | [
"VisIt"
] | 213a7808405d688151adeb72ab6ec35ad6a96fa3dcb987e06be032dd124984a1 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/e2openplugin-OpenWebif | plugin/controllers/views/web/message.py | Python | gpl-2.0 | 5,171 | [
"VisIt"
] | 30961e7d0dea8c4e6c2d14d4676f8b64356b9e84995032753bf58dc3806efd37 |
#!/usr/bin/env python
import sys
import math
import os.path
import pysam
from Script import Script
class BAMflagAnalyzer():
infiles = []
nreads = 0
bits = [("PAIRED", 1),
("PROPER_PAIR", 2),
("UNMAP", 4),
("MUNMAP", 8),
("REVERSE", 16),
("MREVERS... | albertoriva/bioscripts | bamreadlen.py | Python | gpl-3.0 | 5,325 | [
"pysam"
] | 0c1b7fc52284c62af288c87e21f14550daaacbd56cda46b81ef5ea88ab3e157c |
import sys
from traceHandler import sizeError
try:
import matplotlib.pyplot as plt
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.figure import Figure
except RuntimeError as re:
print(re)
sys.exit()
#from inspyred.ec import analysis
from inspyred.ec.analysis ... | KaliLab/optimizer | optimizer/graphic.py | Python | lgpl-2.1 | 113,966 | [
"Gaussian",
"NEURON"
] | c9681393b4ab61040903a7308e6ab7ea08790adb69d4434e079edc911354f01c |
# Begin CVS Header
# $Source: /Volumes/Home/Users/shoops/cvs/copasi_dev/copasi/sbml/unittests/scripts/compareSBMLFiles.py,v $
# $Revision: 1.6 $
# $Name: $
# $Author: gauges $
# $Date: 2008/02/15 13:11:24 $
# End CVS Header
# Copyright (C) 2008 by Pedro Mendes, Virginia Tech Intellectual
# Propertie... | copasi/COPASI | copasi/sbml/unittests/scripts/compareSBMLFiles.py | Python | artistic-2.0 | 30,929 | [
"COPASI"
] | 21311290fa02b075465bb6f2420c64e76b12573b9e867e23d6bbcf91c7389e7d |
'''Various extensions to distributions
* skew normal and skew t distribution by Azzalini, A. & Capitanio, A.
* Gram-Charlier expansion distribution (using 4 moments),
* distributions based on non-linear transformation
- Transf_gen
- ExpTransf_gen, LogTransf_gen
- TransfTwo_gen
(defines as examples: square, n... | pprett/statsmodels | statsmodels/sandbox/distributions/extras.py | Python | bsd-3-clause | 42,324 | [
"Gaussian"
] | 7578de2095e6face99b5f73ad40ab1c1e7c6d1a9489a284963860075ae1cdd04 |
#
# Copyright 2011-2016 Ghent University
#
# This file is part of vsc-mympirun,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# the Flemish Research Foundat... | Iepoev/vsc-mympirun | lib/vsc/mympirun/mpi/mpi.py | Python | gpl-2.0 | 41,888 | [
"GAMESS"
] | e10a3936b7fd271934930cfd08c2e3260683e9d6033a5064e29d7a1df05e50ef |
#
# This file can be placed in the simulations directory of any neuroConstruct simulation
# and all of the data traces found in that directory will be loaded into NeuroTools
# AnalogSignal and SpikeTrain objects
#
#
# Author: Padraig Gleeson
#
# This file has been developed as part of the neuroConstr... | rgerkin/neuroConstruct | pythonNeuroML/NeuroTools/LoadToNeuroTools.py | Python | gpl-2.0 | 3,662 | [
"NEURON"
] | 03826e3b9582249c4e89f10e5d43bf666d524b0cf69751a04f1634a7d532ad8f |
""" ..mod: FTSRequest
=================
Helper class to perform FTS job submission and monitoring.
"""
# # imports
import sys
import re
import time
# # from DIRAC
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Core.Utilities.File import checkGuid
from DIRAC.Core.Utilities.Adler import compareAdler, intAd... | Andrew-McNab-UK/DIRAC | DataManagementSystem/Client/FTSRequest.py | Python | gpl-3.0 | 37,615 | [
"DIRAC"
] | e843930807954063ac2fdfa5b2b7bceb5022b152c0d6fd064a347c9308880560 |
#
# Copyright 2020 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | libAtoms/matscipy | examples/fracture_mechanics/sinclair_crack/params.py | Python | lgpl-2.1 | 2,603 | [
"ASE",
"CRYSTAL",
"Matscipy"
] | 7ba32d6a4dde8cc0b53606f5b99616da8d42e404e12e4bd74127b1e64e6b813b |
"""A script to test the extraction of a bunch of RHEA2 spectra.
The functions within this module should go in the Extractor if they
are general. Spectrograph specific functions should go in the RHEA module
********************************************************************************
NOTE:
----
The functions in thi... | mikeireland/pymfe | test_rhea2_extract.py | Python | mit | 16,632 | [
"Gaussian"
] | 1eeb99dc37d8623072b5c0b552eea7bc590f87a56c5feff825160657c06114c9 |
#!/usr/bin/env python
## Program: VMTK
## Module: $RCSfile: vmtkappend.py,v $
## Language: Python
## Date: $Date: 2016/07/19 09:49:59 $
## Version: $Revision: 1.6 $
## Copyright (c) Jingfeng Jiang, Yu Wang. All rights reserved.
## See LICENCE file for details.
## This software is distribu... | jjiang-mtu/virtual-breast-project | quasi-static_UE/append_geometry/vmtkappend.py | Python | gpl-2.0 | 1,738 | [
"VTK"
] | d967527302d76c3e9fee9f128ebf90250408ffc0b3643d7e924622ae19f16240 |
# Copyright 2016 CERN. This software is distributed under the
# terms of the GNU General Public Licence version 3 (GPL Version 3),
# copied verbatim in the file LICENCE.md.
# In applying this licence, CERN does not waive the privileges and immunities
# granted to it by virtue of its status as an Intergovernmental Or... | blond-admin/BLonD | blond/beam/coasting_beam.py | Python | gpl-3.0 | 3,685 | [
"Gaussian"
] | 4cf392cba17a6c405462794cd48e7e9388838500e302a13227de1f3adf699d59 |
import unittest
from rdkit import Chem
from rdkit.Chem import rdMolInterchange
from rdkit import RDConfig
class TestCase(unittest.TestCase):
def setUp(self):
pass
def test1(self):
smis = ('c1ccccc1','C[C@H](F)Cl')
for smi in smis:
m = Chem.MolFromSmiles(smi)
csmi = Chem.MolToSmiles(m)
... | bp-kelley/rdkit | Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py | Python | bsd-3-clause | 830 | [
"RDKit"
] | 1fedde59e9e18934fa3f2ca0d08e5d0c47bfdc4a1ca387b655bb74cd6d182f8b |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2014, Brian Coca <brian.coca+dev@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the... | kbrebanov/ansible-modules-extras | system/getent.py | Python | gpl-3.0 | 4,333 | [
"Brian"
] | 2c6dc2b5cff8b509b64aaab8e14c4d159413066cf3ebc2567041089115898869 |
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis A. Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
import os
from os import path as op
import sys
from struct import pack
from glob import glob
import numpy as... | matthew-tucker/mne-python | mne/surface.py | Python | bsd-3-clause | 39,112 | [
"Mayavi"
] | 73672a8589a196d14298e390e25b4f0af9756186d774d43b7f314ca74c8ac117 |
"""Dirac notation for states."""
from __future__ import print_function, division
from sympy import (cacheit, conjugate, Expr, Function, integrate, oo, sqrt,
Tuple)
from sympy.core.compatibility import u
from sympy.printing.pretty.stringpict import prettyForm, stringPict
from sympy.physics.quantum.q... | beni55/sympy | sympy/physics/quantum/state.py | Python | bsd-3-clause | 29,191 | [
"DIRAC"
] | b097b598fe3777981baebb72b35bd277158fa3df7defe035440ade4fca4fad42 |
"""
visual_example_fri_vs_clean.py: an example for source separation
Copyright (C) 2017 Hanjie Pan
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option... | hanjiepan/LEAP | visual_example_fri_vs_clean.py | Python | gpl-3.0 | 33,224 | [
"DIRAC"
] | 64010161777925253b1368c778583a37afcf6aa3de6db6cb05cdb7f77ee201ea |
#!/usr/bin/env python
from FileTransfer import FtpFileTransfer
import os
import shutil
import prody
class _main_():
def fetchData():
global wd
wd = str(os.getcwd())
print('All Files will go into the celpp folder')
cred = (wd + '/credentials.txt')
try: #attempts to connect to file requ... | dkoes/celpp | celpp2.py | Python | mit | 10,697 | [
"RDKit"
] | 3f71dc5a5937fe6f2f16d60e38e0eccaa753aca0a854e230f9e876b89f1b7563 |
# -*- coding: utf-8 -*-
''' Graphics of the finite element model.
'''
__author__= "Luis C. Pérez Tato (LCPT) , Ana Ortega (AO_O) "
__copyright__= "Copyright 2016, LCPT, AO_O"
__license__= "GPL"
__version__= "3.0"
__email__= "l.pereztato@ciccp.es, ana.ortega@ciccp.es "
import sys
import vtk
from miscUtils import LogMes... | lcpt/xc | python_modules/postprocess/xcVtk/FE_model/vtk_FE_graphic.py | Python | gpl-3.0 | 16,260 | [
"VTK"
] | 01a6f15adc4f8ec7a910196eef1bb04ee20cb19b466acc569c2db9f05bfe19b9 |
from ..structure import *
from ..utils import *
from neuron.neuralnet import NN
class AMCMC_NN(MCMC):
def __init__(self, problem, \
verbose_int = 100, N = 1000, T = 10000, record_start = 3000, \
train_int = 100, train_steps = 1000, train_batch_size = 5, \
train_lambda_fn = lambd... | SsnL/amcmc | inference/amcmc_nn.py | Python | mit | 9,833 | [
"NEURON"
] | b7bf29375d3b88ea0dd59416b9d02d191471e10911da4ff155380a79e71b8970 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | ashutoshvt/psi4 | psi4/driver/qcdb/interface_gcp.py | Python | lgpl-3.0 | 11,517 | [
"Psi4"
] | 6f6c3d18f043a3f84bad87e3861c86ae866bce9aa92b15c2cb22dbd32d9e8edc |
# -*- coding: utf-8 -*-
#
# Copyright © 2018 Mark Wolfman
#
# This file is part of scimap.
#
# Scimap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any ... | m3wolf/scimap | scimap/pawley_refinement.py | Python | gpl-3.0 | 20,883 | [
"Gaussian"
] | 48dbaeeea896f38aec9cf3c9a71febae62d14c3a6be7ecd51ac0cd6cbf8ffeca |
#!/usr/bin/env python
# QAPI texi generator
#
# This work is licensed under the terms of the GNU LGPL, version 2+.
# See the COPYING file in the top-level directory.
"""This script produces the documentation of a qapi schema in texinfo format"""
import re
import sys
import qapi
MSG_FMT = """
@deftypefn {type} {{}} {n... | J-Liu/qemu | scripts/qapi2texi.py | Python | gpl-2.0 | 8,997 | [
"VisIt"
] | 6b5fe8d000437b014673d5ddae1f21662e8170b422c1c404173dc2dbfd938129 |
#
# Copyright 2008, 2009 Brian R. D'Urso
#
# This file is part of Python Instrument Control System, also known as Pythics.
#
# Pythics is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of t... | LunarLanding/Pythics | pythics/instruments/MettlerToledo_UMX2.py | Python | gpl-3.0 | 2,803 | [
"Brian"
] | 0d40ec87d3b6da755bf2ff4edb98eb7934e2dc36707d3ef0f8715c1054a376db |
#!/usr/bin/env python
###############################################################################
#
# phage_genome_plotter.py - Tell me all about a phage and the spacers and snps
#
###############################################################################
# ... | JoshDaly/scriptShed | phage_genome_plotter.py | Python | gpl-2.0 | 15,561 | [
"BLAST"
] | 0e2d648efd472180276493fba61013cda5cdcdce772f93c0efea784e31e816e4 |
"""
=====================================================
Gaussian process classification (GPC) on iris dataset
=====================================================
This example illustrates the predicted probability of GPC for an isotropic
and anisotropic RBF kernel on a two-dimensional version for the iris-dataset.
... | chenyyx/scikit-learn-doc-zh | examples/zh/gaussian_process/plot_gpc_iris.py | Python | gpl-3.0 | 2,269 | [
"Gaussian"
] | 014ca3922405837ede6e1004b9d375c738ab9db519eee937506a116c18ab0bfa |
from __future__ import division
import numpy as np
import pandas as pd
import scipy.stats
# Basic utilities.
def get_teams(data):
return data['Visitor'].append(data['Home']).unique()
class RatingAlgorithm(object):
"""Base class for rating algorithm."""
def __init__(self):
raise NotImplemented... | young-geng/RatingAnalysis | rating_utils.py | Python | bsd-2-clause | 11,360 | [
"Gaussian"
] | 88f31d4dc04da1653551647fcffa18f16b89868c05a899d6270a6874dcd0d98b |
# coding: utf8
#
# python-ipfix (c) 2013 Brian Trammell.
#
# Many thanks to the mPlane consortium (http://www.ict-mplane.eu) for
# its material support of this effort.
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by t... | britram/python-ipfix | ipfix/__init__.py | Python | lgpl-3.0 | 2,474 | [
"Brian"
] | ded41b355b262b12a522bbe56201657362e08724216819ca69f697e8a34406d5 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | jairideout/scikit-bio | skbio/diversity/alpha/_chao1.py | Python | bsd-3-clause | 6,514 | [
"scikit-bio"
] | 03e37ade9abb7565fdd3fbde08abd2bc1f58ce5586cd0c4cbb82d2dda422891e |
# $Id$
#
# Copyright (C) 2006 Greg Landrum
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
from rdkit.Chem.FeatMaps.FeatMapPoint import FeatMapPoi... | rvianello/rdkit | rdkit/Chem/FeatMaps/FeatMaps.py | Python | bsd-3-clause | 7,458 | [
"Gaussian",
"RDKit"
] | cf7aee37bef2efd778cf5e78d07d6d16cd893f7d414484efe0397b3d9fdf7aa1 |
# Copyright 2016-2020 The GPflow Contributors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | GPflow/GPflow | gpflow/models/gplvm.py | Python | apache-2.0 | 11,715 | [
"Gaussian"
] | c6c864e680367678680a9f93439796159f105f1e9613806519cdda70619df83e |
from __future__ import absolute_import
import logging
import six
from six.moves.urllib.parse import quote_plus
from django.core.urlresolvers import reverse
from django.utils.translation import ugettext as _
from sentry import features
from sentry.integrations import (
Integration, IntegrationFeatures, Integrati... | ifduyue/sentry | src/sentry/integrations/jira/integration.py | Python | bsd-3-clause | 27,403 | [
"VisIt"
] | c8f6dae12c561f747aba0334e2aa0a28cedc6ecc467181f5dcbaba2abd349066 |
import ast
from unittest import TestCase
from bricklayer.doctor.ast_visitors import *
class AstVisitorsTest(TestCase):
def test_it_gets_all_user_defined_functions(self):
code = """
def my_function():
print 'hello'
"""
v = UserDefinedFunctionVisitor()
v.visit(ast.parse(code))
... | cbrentharris/bricklayer | bricklayer/tests/doctor/ast_visitors_test.py | Python | mit | 937 | [
"VisIt"
] | 5b17598418d65a4be94bfe7cfb5dfb6c5f08f68a14b80bfa5b9957727cc067df |
import sys
import os
import numpy as np
import h5py
import multiprocessing
import cPickle
import matplotlib.pyplot as plt
from scipy.stats import sigmaclip
from sklearn.gaussian_process import GaussianProcess
fMapper = {
"apcp_sfc" : "Total_precipitation",
"dlwrf_sfc" : "Downward_Long-Wave_Rad_Flux",
"dswr... | acbecker/solar | gp.py | Python | mit | 9,681 | [
"Gaussian"
] | 1301879089545430c6af5b4aca566aa5eaee360f17fd5cf99458416f88e121de |
from __future__ import division, absolute_import, print_function
import collections
import operator
import re
import sys
import warnings
import numpy as np
import numpy.core.numeric as _nx
from numpy.core import linspace, atleast_1d, atleast_2d, transpose
from numpy.core.numeric import (
ones, zeros, arange, conc... | jjas0nn/solvem | tensorflow/lib/python2.7/site-packages/numpy/lib/function_base.py | Python | mit | 164,441 | [
"Gaussian"
] | 0dcbef02b97859221bc84731787336035d00d54ced2ff0eae30b6568eeea77ea |
# Copyright (c) 2013-2015 Siphon Contributors.
# Distributed under the terms of the BSD 3-Clause License.
# SPDX-License-Identifier: BSD-3-Clause
"""Test the parsing of the NCSS dataset.xml."""
import logging
import xml.etree.ElementTree as ET # noqa:N814
from siphon.http_util import session_manager
from siphon.ncss... | Unidata/siphon | tests/test_ncss_dataset.py | Python | bsd-3-clause | 24,738 | [
"NetCDF"
] | 420b730bd4649873e5c2ff699490ddedbe9312597e990aa9db9eedbd0492d01e |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright: Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
... | hryamzik/ansible | lib/ansible/modules/packaging/os/dpkg_selections.py | Python | gpl-3.0 | 2,155 | [
"Brian"
] | ad719487eb59c45f64e0efbfbf80e5ef7bc8ff87e7f848b45aa676f32d509910 |
import asyncio
import discord
import re
import os
import random
import string
import json
import time
import html
import codecs
from random import shuffle
from discord.ext import commands
class CardsAgainstHumanity:
# Init with the bot reference, and a reference to the deck file
def __init__(self, bot, fil... | jonyroda97/redbot-amigosprovaveis | cogs/cah.py | Python | gpl-3.0 | 73,657 | [
"VisIt"
] | fea94ca1238aac23235c2f05022be2250c60146ab63d064bdda1e5b1df333ffd |
#!/usr/bin/env python
import vtk, os
from pymicro.crystal.lattice import Lattice
from pymicro.view.scene3d import Scene3D
from pymicro.view.vtk_utils import lattice_grid, lattice_3d, lattice_3d_with_planes, axes_actor, \
apply_translation_to_actor
'''
Create a 3d scene with all the crystal lattice types.
Each latt... | heprom/pymicro | examples/3d_visualisation/crystal_lattice_3d.py | Python | mit | 2,147 | [
"CRYSTAL",
"VTK"
] | 0568d9572a5ab180a67f5782cbd1ce327bdf5252697c754d3b38aed7b5473db5 |
#! /usr/bin/env python
# Expect peculiar motion to be 0 in all three vectors if maser is rotating at the same
# velocity as the galaxy.
from scipy import *
from ephem import *
from pylab import *
import sys
import re
from functions import *
from spec2gpec_inp import *
def buff(charOfInterest,spaceCount): # Buffer
... | ekadhanda/bin | inputs/spect.py | Python | mit | 4,304 | [
"Galaxy"
] | 8e8aabefbb394417883b78af9e5dcc4166993290b97cafd05a905dfda9cc4ca3 |
import unittest
from os import path
from os import environ
from shyft import shyftdata_dir
from shyft import api
from shyft.repository.netcdf.opendap_data_repository import GFSDataRepository
class GFSDataRepositoryTestCase(unittest.TestCase):
@property
def start_date(self):
utc = api.Calendar()
... | felixmatt/shyft | shyft/tests/test_opendap_repository.py | Python | lgpl-3.0 | 5,259 | [
"NetCDF"
] | ea5aac7694fd8857f03f5752d12f7d30c09c8c4ad89b2c8a8c1bea37ffe0e897 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------... | Jorge-C/bipy | skbio/util/__init__.py | Python | bsd-3-clause | 432 | [
"scikit-bio"
] | d638587101e16ca7f4e86dcc27198ce452f18473268992d62c76af7a0d3c00e1 |
################################################################
#NB: FOR FIREFOX USERS ONLY
#Little script that reads your browsing history and returns your
#20 most visited domains. Produces a urls.txt file for the
#domain of your choice, which can be fed to indexPages.py
############################################... | MohamedAshiqrh/PeARS | local/mkURLFile.py | Python | mit | 2,777 | [
"VisIt"
] | e1643014dae7f7061bc169ee435b10eddaee25bb442a3f448736b39fed7a17be |
"""
Woopra template tags and filters.
"""
import json
import re
from django.conf import settings
from django.template import Library, Node, TemplateSyntaxError
from analytical.utils import (
disable_html,
get_identity,
get_required_setting,
get_user_from_context,
get_user_is_authenticated,
is... | jcassee/django-analytical | analytical/templatetags/woopra.py | Python | mit | 3,250 | [
"VisIt"
] | 21c753a638032f751a5b122c1c74cd43641e19a0c354ed41bef01b5967869e0e |
from __future__ import unicode_literals, print_function
import os
import ansible
from distutils.version import LooseVersion
message = """
To ensure Ansible can use the NAPALM modules you will have
to add the following configurtion to your Ansible configuration
file (ansible.cfg):
[defaults]
library = {path}/m... | napalm-automation/napalm-ansible | napalm_ansible/__init__.py | Python | apache-2.0 | 792 | [
"VisIt"
] | 41e9782ebe60b97daeff476dcca18ec937114bd5367bf0a6c3fcdc7649e9bf53 |
"""
Test LMS Notes
"""
from unittest import skip
import random
from uuid import uuid4
from datetime import datetime
from nose.plugins.attrib import attr
from common.test.acceptance.tests.helpers import UniqueCourseTest, EventsTestMixin
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
... | romain-li/edx-platform | common/test/acceptance/tests/lms/test_lms_edxnotes.py | Python | agpl-3.0 | 59,945 | [
"VisIt"
] | 407abc406f3d6fa969966a791a409fa80844914f1b6f411582b74d2662a9640d |
# -*-python-*-
#
# Copyright (C) 1999-2006 The ViewCVS Group. All Rights Reserved.
#
# By using this file, you agree to the terms and conditions set forth in
# the LICENSE.html file which can be found at the top level of the ViewVC
# distribution or at http://viewvc.org/license-1.html.
#
# For more information, visit h... | foresthz/fusion5.1 | www/scm/viewvc/lib/vclib/svn_ra/__init__.py | Python | gpl-2.0 | 14,887 | [
"VisIt"
] | 91b881887207b9d5bc91f27d18262a7cc22f82ab88c068bd0dd9b9dc3128b202 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under th... | kain88-de/mdanalysis | package/MDAnalysis/analysis/encore/utils.py | Python | gpl-2.0 | 12,123 | [
"MDAnalysis"
] | bdc78a280eb0398ba0efda4da7d2c8cd98518492378c9601f27c6c02fd565e0a |
../../../../../../../share/pyshared/orca/scripts/apps/soffice/speech_generator.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/soffice/speech_generator.py | Python | gpl-3.0 | 81 | [
"ORCA"
] | 7b158d9fa62cfdefd0e00ea32a986a894adb6095e16e9cf3c86cd0d5e0118b5d |
# -*- coding: utf-8 -*-
import os
from setuptools import setup
from setuptools import find_packages
with open(os.path.join(os.path.dirname(__file__), 'README.md')) as readme:
README = readme.read()
# allow setup.py to be run from any path
os.chdir(os.path.normpath(os.path.join(os.path.abspath(__file__), os.pardir... | botswana-harvard/edc-visit-schedule | setup.py | Python | gpl-2.0 | 1,173 | [
"VisIt"
] | 1a164c545e9fa0778969c11852de0e0bc7ac0afaccfebfbba6b83546218db6ef |
"""Initial configuration setup.
Index
-----
.. currentmodule:: nanoqm.workflows.initialization
.. autosummary::
initialize
split_trajectory
API
---
.. autofunction:: initialize
.. autofunction:: split_trajectory
"""
__all__ = ['initialize', 'read_swaps', 'split_trajectory']
import fnmatch
import getpass
impo... | SCM-NV/qmworks-namd | nanoqm/workflows/initialization.py | Python | mit | 7,433 | [
"CP2K"
] | 1dafddde70451d5e11097907e3c5130dbbf371ae7157993ffa5133ebd8e89cc9 |
# This module defines a SeleniumTest class that is used here and in
# the discussion app to run Selenium and Chrome-based functional/integration
# testing.
#
# Selenium requires that 'chromedriver' be on the system PATH. The
# Ubuntu package chromium-chromedriver installs Chromium and
# chromedriver. But if you also ha... | GovReady/govready-q | siteapp/tests.py | Python | gpl-3.0 | 74,496 | [
"VisIt"
] | 940f51f7a4fd2fe249253c2171143b49edc9726fb520c235686d330fc6b8ef8c |
import gzip
import os
import pysam
from TestUtils import TABIX_DATADIR
FN_COMPRESSED = "example.bed.gz"
FN_UNCOMPRESSED = "example.bed"
FN_LARGE_COMPRESSED = "example_large.bed.gz"
FN_LARGE_UNCOMPRESSED = "example_large.bed"
def read_python_compressed(fn):
'''iterate through with python.'''
with gzip.open(f... | kyleabeauchamp/pysam | tests/tabix_bench.py | Python | mit | 5,235 | [
"pysam"
] | 887ae1f0911572cdac8951e968dc3f6c8b8143a7b31ae85949afbdf1d0e116f2 |
# coding: utf-8
from __future__ import division, unicode_literals
"""
This module defines PDEntry, which wraps information (composition and energy)
necessary to create phase diagrams.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2011, The Materials Project"
__version__ = "1.0"
__maintainer__ = "Shyu... | Dioptas/pymatgen | pymatgen/phasediagram/entries.py | Python | mit | 9,392 | [
"pymatgen"
] | 65c3297f6d75bae0ffd59a766ce226f8a1db586028dd15b6fa6cd6ffb88fd3dd |
# Copyright (c) 2017-2019 Uber Technologies, Inc.
# SPDX-License-Identifier: Apache-2.0
import torch
from torch.distributions import constraints
import pyro
import pyro.distributions as dist
from pyro.contrib.gp.likelihoods.likelihood import Likelihood
from pyro.nn.module import PyroParam
class Gaussian(Likelihood)... | uber/pyro | pyro/contrib/gp/likelihoods/gaussian.py | Python | apache-2.0 | 1,677 | [
"Gaussian"
] | 66eb8ec52ea62dc4eff6d8e7cc13eb11a65b6f7492966c52771153315ef1a4a6 |
#! /usr/bin/env python
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistr... | jH0ward/psi4 | psi4/versioner.py | Python | lgpl-3.0 | 14,383 | [
"Psi4"
] | 16fc50c838dfa88dbd377da4e2fbfb0e54b10879b65fe3269bad52aabf33be7b |
# pmx Copyright Notice
# ============================
#
# The pmx source code is copyrighted, but you can freely use and
# copy it as long as you don't change or remove any of the copyright
# notices.
#
# ----------------------------------------------------------------------
# pmx is Copyright (C) 2006-2013 by Daniel ... | dseeliger/pmx | pmx/__init__.py | Python | lgpl-3.0 | 2,080 | [
"Gromacs"
] | 2b879f635feafcfb73cfe92037d54be29d11a85b8319b30c4a13b33b83250218 |
import numpy as np
from PIL import ImageGrab
import cv2
import time
from directScanKeys import ReleaseKey, PressKey, W, A, S, D
import pyautogui
from numpy import ones,vstack
from numpy.linalg import lstsq
from numpy import polyfit
from statistics import mean
from matplotlib import pyplot as plt
from getKeys... | adityagm/Self-Driving-Try | sd_1_version_2_backup_v2.py | Python | gpl-3.0 | 6,736 | [
"Gaussian"
] | c9606a0454d2dd36d93fc83bd76f2ea63099005eb61918b324148126c3b0e5e1 |
"""Livestreamer extracts streams from various services.
The main compontent of Livestreamer is a command-line utility that
launches the streams in a video player.
An API is also provided that allows direct access to stream data.
Full documentation is available at http://livestreamer.tanuki.se/.
"""
__title__ = "l... | guymakam/Kodi-Israel | plugin.video.israelive/resources/lib/livestreamer/__init__.py | Python | gpl-2.0 | 1,258 | [
"Brian"
] | 392ba3089936f80f8733417518caa50589ef0131f701f972dd2f5d22e03b6c99 |
from __main__ import vtk, qt, ctk, slicer
import string
import collections
import FeatureWidgetHelperLib
class CheckableTabsWidget(qt.QTabWidget):
""" Class that contains all the tabs correspondign to the main categories
"""
def __init__(self, parent=None):
super(CheckableTabsWidget, self).__init_... | acil-bwh/SlicerCIP | Scripted/CIP_LesionModel/FeatureWidgetHelperLib/FeatureWidgets.py | Python | bsd-3-clause | 6,811 | [
"VTK"
] | 263a6494404613bbb1eff1dae2396b210c28c982cdf0c7bfa7005c1bdc2c955c |
# -*- coding: utf-8 -*-
u"""
.. module:: fabfile
Be aware, that becaus fabric doesn't support py3k You need to execute this
particular script using Python 2.
"""
import contextlib
from fabric.api import cd
from fabric.api import env
from fabric.api import prefix
from fabric.api import run
env.user = 'root'
env.host... | magul/empatia | fabfile.py | Python | mit | 679 | [
"GULP"
] | 3da9773ce12d473670e506b8b042e0ebebfee1d4e7965236a3fd1b95a5a68245 |
# (c) 2017, Brian Coca <bcoca@ansible.com>
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Ansible is distributed in th... | romain-dartigues/ansible | lib/ansible/cli/inventory.py | Python | gpl-3.0 | 16,727 | [
"Brian"
] | d7f5e74bc28571ad356bc274ddb502fd3d7df8118635461d09d0ccae8ca8fcbe |
# coding=utf-8
# Copyright © 2016 Computational Molecular Biology Group,
# Freie Universität Berlin (GER)
#
# This file is part of ReaDDy.
#
# ReaDDy is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as
# published by the Free Softwar... | chrisfroe/readdy | wrappers/python/src/python/readdy/api/trajectory.py | Python | lgpl-3.0 | 20,523 | [
"VMD"
] | ff4b76912affbacee0a92cebf863c644e34f35409b1cad16f61b17bf6a2bec4b |
# -*- coding: utf-8 -*-
"""
File related views, including view_file, view_history_file, view_trash_file,
view_snapshot_file, view_shared_file, file_edit, etc.
"""
import os
import hashlib
import json
import stat
import urllib2
import chardet
import logging
import posixpath
import re
import mimetypes
import urlparse
im... | madflow/seahub | seahub/views/file.py | Python | apache-2.0 | 57,593 | [
"VisIt"
] | cc9d5fc1af94bb81a513c1bc39a9156fdac95bc864911720207bbf5c19538169 |
'''
Verbose broken (piecewise continuous) random field generation.
Note:
When FWHM gets large (2FWHM>nNodes), the data should be padded prior to filtering.
Use **rft1d.random.randn1d** for optional padding.
'''
import numpy as np
from scipy.ndimage import gaussian_filter1d
from matplotlib import pyplot
#(0) Se... | 0todd0000/spm1d | spm1d/rft1d/examples/random_fields_broken_0.py | Python | gpl-3.0 | 1,728 | [
"Gaussian"
] | 53c0811474456fc1464c778f2a0b418b6c80f29ac5b9a439242d43bdd44dbd5a |
#!/usr/bin/env python3
import sys
import multiprocessing
from pathlib import Path
import jinja2
import pypandoc
import pytoml as toml
from common import validate_toml
if (sys.version_info.major, sys.version_info.minor) < (3, 6):
raise Exception("need Python 3.6 or later")
THIS_FILE = Path(__file__).resolve()
R... | burnsauce/teletype | utils/cheatsheet.py | Python | gpl-2.0 | 3,687 | [
"ORCA"
] | cf98f52964463aa8675993242e76601a01d4741307b8080530ee9431c06db1ee |
# -*- coding: utf-8 -*-
import ast
import logging
import os.path
import re
import traceback
from collections import OrderedDict, Sized, Mapping
from functools import reduce
from itertools import tee, count
from textwrap import dedent
import itertools
from lxml import etree, html
from psycopg2.extensions import Transa... | t3dev/odoo | odoo/addons/base/models/qweb.py | Python | gpl-3.0 | 70,160 | [
"VisIt"
] | f32ac6348a16fdcbd9361c41042d83a7685f994550b1fc76542222def8272b2e |
from pathlib import Path
from vulture import Vulture, noqa
from vulture.utils import VultureInputException
from .base import PythonTool, Issue, ParseIssue, AccessIssue
from ..util import parse_python_file
class VultureIssue(Issue):
tool = 'vulture'
pylint_type = 'R'
class TidyPyVulture(Vulture):
ISSU... | jayclassless/tidypy | src/tidypy/tools/vulture.py | Python | mit | 4,190 | [
"VisIt"
] | 3abfe1b6eec45ff872ec4d1678d43038836ee997c15253e464e9add472a8cc61 |
"""
Created on 3/05/2013
@author: thom
"""
import unittest
from rdkit.Chem import AllChem as Chem
from chemistry_model.reaction import Reaction
class Test(unittest.TestCase):
def testInit(self):
result = Reaction(Chem.MolFromSmiles('O=C=O'), 40)
self.assertEqual(40, result.get_energy_delta())
... | th0mmeke/toyworld | tests/test_reaction.py | Python | gpl-3.0 | 368 | [
"RDKit"
] | 5b77819ce91b7481ea54eb737fdd93bc1f24b7635638a97fe8907bfdf92f23fe |
#!/usr/bin/env python
#
# Copyright (C) 2014 Brian Caswell <bmc@lungetech.com>
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without restriction, including without limitation
# the rights... | f0rki/cb-multios | tools/generate-polls/examples/ftplite/ftplite.py | Python | mit | 4,897 | [
"Brian"
] | d48ce6c7007f1dc3b5128be09799235891435c1748685f2cb11364f971e7ed15 |
'''
Created on 23/11/2009
@author: Brian Thorne
'''
import logging
from scipysim.actors import Siso, Channel, Event, LastEvent
class Proportional(Siso):
'''
This actor takes a source and multiplies it by some gain P.
'''
def __init__(self, input, out, gain=2.0):
"""
Constructor for a... | hardbyte/scipy-sim | scipysim/actors/math/proportional.py | Python | gpl-3.0 | 1,782 | [
"Brian"
] | 4c86bf2442a9fb3417a880827aa6e493e1e8791b55881007a1835cf0057b0a69 |
#!/usr/bin/python
## -*- coding: utf-8 -*-
##
## (C) 2008, 2013 Muthiah Annamalai
## Licensed under GPL Version 3
##
## This module contains AST visitor for the Ezhil language.
## It is used by profiling insertion, semantic checks among
## others
from .ezhil_scanner import EzhilLex, EzhilToken
#from .Interpreter Ezh... | arcturusannamalai/Ezhil-Lang | ezhil/transform.py | Python | gpl-3.0 | 9,120 | [
"VisIt"
] | 4692ed80a1ee2e10728967d89d42f0f5c2204229f24759be60732d03286497f4 |
#!/usr/bin/env python3
"""
This script is a python version of TimingAccuracyGLQ. We use numpy functions to
simplify the creation of random coefficients.
"""
import time
import numpy as np
from pyshtools import expand
from pyshtools import spectralanalysis
# ==== MAIN FUNCTION ====
def main():
TimingAccuracyGLQ()... | MarkWieczorek/SHTOOLS | examples/python/TimingAccuracy/TimingAccuracyGLQ.py | Python | bsd-3-clause | 2,854 | [
"Gaussian"
] | 15aaebd9bc58019ab51a72cf911a472d7a99935bad56bccd46af82f91272147d |
# -*- coding: utf-8 -*-
# Copyright (c) 2006-2011, 2013-2014 LOGILAB S.A. (Paris, FRANCE) <contact@logilab.fr>
# Copyright (c) 2013 Phil Schaf <flying-sheep@web.de>
# Copyright (c) 2014-2018 Claudiu Popa <pcmanticore@gmail.com>
# Copyright (c) 2014-2015 Google, Inc.
# Copyright (c) 2014 Alexander Presnyakov <flagist0@g... | ekwoodrich/python-dvrip | env/lib/python3.5/site-packages/astroid/builder.py | Python | mit | 16,023 | [
"VisIt"
] | d30ac2e3e6aeb14fe710492023c2c94ecacd14dfd709b3a4aa81b60ec282b24b |
# -*- coding: utf-8 -*-
#
# test_step_rate_generator.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of th... | hakonsbm/nest-simulator | pynest/nest/tests/test_step_rate_generator.py | Python | gpl-2.0 | 2,863 | [
"NEURON"
] | ae407f9e7b769a8743470f228969d3df60f6fab4f346191c7fc09386d71b1a04 |
# Copyright 2014 Google Inc.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope... | JetChars/vim | vim/bundle/python-mode/pymode/libs/pylint/checkers/python3.py | Python | apache-2.0 | 25,096 | [
"VisIt"
] | 2ff32879ed0e8d2ee5488d7a45e551a6cdd41b7b081498764a64613760062d17 |
# Copyright 2018 Google LLC. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | PAIR-code/interpretability | text-dream/python/dream/reconstruct_activation.py | Python | apache-2.0 | 10,106 | [
"NEURON"
] | f1428f5c886787a9959917f8faca73e801f266766c3787de106cf064c56edc7b |
#!/usr/bin/env python3
"""
refguide_check.py [OPTIONS] [-- ARGS]
- Check for a NumPy submodule whether the objects in its __all__ dict
correspond to the objects included in the reference guide.
- Check docstring examples
- Check example blocks in RST files
Example of usage::
$ python refguide_check.py optimize... | endolith/numpy | tools/refguide_check.py | Python | bsd-3-clause | 37,851 | [
"Gaussian"
] | 02c87bee38060a258262bc7d7efe9a43f487354ab790ca34490820512e2743c0 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | andysim/psi4 | psi4/driver/p4util/numpy_helper.py | Python | gpl-2.0 | 16,894 | [
"Psi4"
] | c3b37d6a5e3fbfe62a51d2293a0b8d85c1e4601af0d4e987c7795dd1719bbc12 |
from hashkernel.bakery import Cake, CakeRole
from hashstore.bakery.lite.node import (
User, Permission, UserType, Portal, PortalHistory, VolatileTree)
from sqlalchemy import or_, and_
def find_normal_user(glue_sess, user_or_email):
if isinstance(user_or_email, str) and '@' in user_or_email:
conditio... | walnutgeek/hashstore | hashstore/bakery/lite/dal.py | Python | apache-2.0 | 2,766 | [
"NEURON"
] | 635ca39c1b37c3370a041cff6bbd4ab8055df73cfd9587ce9c17a465b29e03da |
# selectedPoints.py copyright (c) 2003 Charl P. Botha <cpbotha@ieee.org>
# $Id$
#
from module_kits.misc_kit.mixins import SubjectMixin
from modules.viewers.slice3dVWRmodules.shared import s3dcGridMixin
import operator
import vtk
import wx
# -------------------------------------------------------------------------
c... | nagyistoce/devide | modules/viewers/slice3dVWRmodules/selectedPoints.py | Python | bsd-3-clause | 19,169 | [
"VTK"
] | 764c52d2002b497dc654f6266cf9d8630160f2a5a8aa0f1b728d905b45ad8f27 |
#!/usr/bin/env python
'''
Fly Copter in SITL
AP_FLAKE8_CLEAN
'''
from __future__ import print_function
import copy
import math
import os
import shutil
import time
import numpy
from pymavlink import mavutil
from pymavlink import mavextra
from pymavlink import rotmat
from pysim import util
from pysim import vehiclei... | collmot/ardupilot | Tools/autotest/arducopter.py | Python | gpl-3.0 | 320,933 | [
"Gaussian"
] | f7173f67ba6360e2163a5162ad56c7694330ce6048a71b8d954b94f644e3d4ef |
# -*- coding: utf-8 -*-
##
## This file is part of Invenio.
## Copyright (C) 2013, 2014 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of the
## License, or (at your opt... | lnielsen/invenio | invenio/modules/deposit/models.py | Python | gpl-2.0 | 46,747 | [
"VisIt"
] | 90b16ad0be051bb0f34a3bc2e40277187142b5580e2228b86ac90a882dba9e36 |
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from __future__ import division, print_function, absolute_import
import warnings
from scipy.special import comb
from scipy.misc.doccer import inherit_docstring_from
from scipy import special
from scipy import optim... | raoulbq/scipy | scipy/stats/_continuous_distns.py | Python | bsd-3-clause | 118,838 | [
"Gaussian"
] | 7a31f7e8044e14b64c2d4cbd94d203df9be8258e57115c16f19462fcac52b38c |
# Import of the relevant tools
import time
import numpy as np
import theano
import theano.tensor as T
from theano import pp, config
from numpy.fft import fftn, ifftn, fftshift, ifftshift, fftfreq
from .theano_hamiltoniancarrier import TheanoHamiltonianCarrier
from .images_manifold import ImagesManifold
... | jeanfeydy/lddmm-ot | LDDMM_Python/lddmm_python/modules/manifolds/images_carrier.py | Python | mit | 5,721 | [
"DIRAC",
"Gaussian"
] | eb02ab83021a68d20cb874fc716c35632928660a791ac258f9957e0cecf8a9a8 |
# Multi-armed bandit problem for a linear Gaussian model
# with linear reward function.
# In this demo, we consider three arms:
# 1. The first arm is an upward-trending arm with initial negative bias
# 2. The second arm is a downward-trending arm with initial positive bias
# 3. The third arm is a stationary arm with in... | probml/pyprobml | scripts/thompson_sampling_linear_gaussian.py | Python | mit | 6,762 | [
"Gaussian"
] | 020f4823ead380c9c7a56277a7a0172790d2abd2f72a35dfb0b19f965eeb4c91 |
# Copyright 2012-2014 Brian May
#
# This file is part of python-tldap.
#
# python-tldap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.... | brianmay/python-tldap-debian | tldap/schemas/ds389.py | Python | gpl-3.0 | 1,387 | [
"Brian"
] | 3429d5998cae0c080a788fae98a58471bab34cd8892bcdbe364b4a15fefed09a |
#!/usr/bin/env python
# encoding: utf-8
import os
import sys
import time
import pprint
import pytest
import signal
import threading
import Queue
import traceback
from urlparse import urlsplit, parse_qsl, urlunsplit, urljoin
from urllib import urlencode
from bs4 import BeautifulSoup
from testlib import web, var_dir
c... | ypid-bot/check_mk | tests/web/test_crawl.py | Python | gpl-2.0 | 11,497 | [
"VisIt"
] | aaad9ff87a5c8c3d6a362a2fdc79e1be8ec24bac68cb311e7925c81f6f5b1937 |
# ws30 -- the thirty minute web server
# author: Wilhelm Fitzpatrick (rafial@well.com)
# date: August 3rd, 2002
# version: 1.0
#
# Written after attending a Dave Thomas talk at PNSS and hearing about
# his "write a web server in Ruby in one hour" challenge.
#
# Actual time spent:
# 30 minutes reading socket man page
# ... | unice2345/uw_python | week04/thirty_minute_webserver.py | Python | gpl-3.0 | 2,907 | [
"Brian"
] | 2dbdb8fdcb713b21c07c1e35724b54ace0c9390799634c189f733ef9c727bc4c |
## Automatically adapted for numpy.oldnumeric Jun 27, 2008 by -c
#
# Copyright (C) 2001-2008 greg Landrum
#
""" unit testing code for the Stats module
"""
import unittest,sys
from rdkit import RDConfig
from rdkit.ML.Data import Stats
import numpy
FLOAT_TOL = 1e-4
def feq(x,y,tol=FLOAT_TOL):
return abs(x-y)<tol
... | rdkit/rdkit-orig | rdkit/ML/Data/UnitTestStats.py | Python | bsd-3-clause | 5,294 | [
"RDKit"
] | 34d539072cbfcdbc661f277a89af33936993f3141907950bbb5ce4a2a4258dda |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/controls/modeltree.py | Python | gpl-2.0 | 3,686 | [
"VisIt"
] | bda87cc7b426f50c7fd0f89fe25eae1a8afc3dfc139bf84ccff057c53559996c |
import sys
import csv
from collections import defaultdict
def loadData(csvfile):
listRawData = list()
if csvfile == '-':
fh = sys.stdin
else:
fh = open(csvfile, 'r')
try:
csvreader = csv.reader(fh, delimiter=',')
for nRow, row in enumerate(csvreader):
if nR... | steffens21/diesunddas | soccer_stats_calc/soccer_betting_eval.py | Python | mit | 7,507 | [
"BWA"
] | 97d01a737effc36816b6f1c7ff11ae76d2dcaed27c3dced1152eafc1ebef6169 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | psi4/driver/p4util/python_helpers.py | Python | gpl-2.0 | 5,000 | [
"Psi4"
] | e7d30225e597564441d500774054f57ceed3ba0daa383059595ca917a4ff44a5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# PCR-GLOBWB (PCRaster Global Water Balance) Global Hydrological Model
#
# Copyright (C) 2016, Ludovicus P. H. (Rens) van Beek, Edwin H. Sutanudjaja, Yoshihide Wada,
# Joyce H. C. Bosmans, Niels Drost, Inge E. M. de Graaf, Kor de Jong, Patricia Lopez Lopez,
# Stefanie ... | UU-Hydro/PCR-GLOBWB_model | modflow/scripts/deterministic_runner_glue_with_parallel_and_modflow_options.py | Python | gpl-3.0 | 25,522 | [
"NetCDF"
] | 275f8a9fa793c9c3d31731e193a00aa4bc79ae5238eb9c889ba69de84f8f53c8 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
from pymatgen.io.pwscf import PWInput, PWInputError, PWOutput
from pymatgen.util.testing import PymatgenTest
class PWInputTest(PymatgenTest):
def test_init(self):
s = se... | gmatteo/pymatgen | pymatgen/io/tests/test_pwscf.py | Python | mit | 1,988 | [
"CRYSTAL",
"pymatgen"
] | bb3978273ecc6281cbb2b44a45d5415d1ad83c8dfafe5bfd3b4b3f1c2c937327 |
"""
==========================================
Outlier detection with several methods.
==========================================
When the amount of contamination is known, this example illustrates three
different ways of performing :ref:`outlier_detection`:
- based on a robust estimator of covariance, which is assum... | RPGOne/Skynet | scikit-learn-0.18.1/examples/covariance/plot_outlier_detection.py | Python | bsd-3-clause | 4,318 | [
"Gaussian"
] | 1e8b9d0781705fc4c1fcd6675f0fed66cfae6348b90faad72e30b3afe2e1cff5 |
from .ahdlvisitor import AHDLVisitor
class AHDLVarReplacer(AHDLVisitor):
def replace(self, ahdl, old, new):
self.old = old
self.new = new
self.visit(ahdl)
def visit_AHDL_VAR(self, ahdl):
if ahdl.sig == self.old:
ahdl.sig = self.new
| ktok07b6/polyphony | polyphony/compiler/ahdlhelper.py | Python | mit | 287 | [
"VisIt"
] | 424f84dae80309f88d7d43719dbc8673f1237e1ddfe56bf910a380efff2897d6 |
#!/usr/bin/env python
import __main__
#__main__.pymol_argv = [ 'pymol', '-qc'] # Quiet and no GUI
import sys, time, os
from pymol import cmd
import pymol
if len(sys.argv) < 3:
print "Useage: plot_cube.py <pdb_name> <cube_name>"
exit()
pymol.finish_launching()
surface_name = sys.argv[2].split('.')[0]
mol_name = sy... | chliu1990/plotMO | plot_cube.py | Python | mit | 741 | [
"PyMOL"
] | 08f8d1c3340c0fc79dea5453049e94f312d636c9bb8f4cad8515d61eacf10066 |
'''This module contains routines to extract data from the crawler's database to analyze content for Jeff Hardy's
project Alpha. The idea is to extract the database content for inclusion in a client-ready report, probably in
Excel. I plan to do this by producing a bunch of tab-deliminted files into a directory wi... | pbarton666/buzz_bot | djangoproj/djangoapp/moviemain.py | Python | mit | 6,987 | [
"VisIt"
] | fa1d9a58012534846f0fb2654dcb99a345aa323131733f60856e0c3f957bf421 |
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