text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Makes sure that all files contain proper licensing information."""
import json
import optparse
import os.path
import subproces... | Teamxrtc/webrtc-streaming-node | third_party/webrtc/src/chromium/src/tools/checklicenses/checklicenses.py | Python | mit | 20,607 | [
"Galaxy"
] | 01b1c50ff7080c273805013b0eb8519409255c329fe78437284b2ce7da14fbf0 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
For downloading lecture resources such as videos for Coursera classes. Given
a class name, username and password, it scrapes the course listing page to
get the section (week) and lecture names, and then downloads the related
materials into appropriately named files and... | TheEpsylon/coursera | coursera/coursera_dl.py | Python | gpl-3.0 | 29,176 | [
"VisIt"
] | 935495a20471e086e4ac901279035e0303d98028a102e9b8bc42a8a298dcdacf |
from __future__ import unicode_literals
import binascii
import collections
import email
import getpass
import io
import optparse
import os
import re
import shlex
import shutil
import socket
import struct
import subprocess
import sys
import itertools
import xml.etree.ElementTree
try:
import urllib.request as comp... | dntt1/youtube-dl | youtube_dl/compat.py | Python | unlicense | 88,351 | [
"Bowtie"
] | 628eb402a791fff1a1cb95fb1b3ef6ad392f017419b10f6bb4643305296a186e |
import optoanalysis
import matplotlib.pyplot as _plt
import numpy as _np
import scipy.signal
from bisect import bisect_left as _bisect_left
from scipy.optimize import curve_fit as _curve_fit
import uncertainties as _uncertainties
from mpl_toolkits.mplot3d.axes3d import Axes3D
from matplotlib import rcParams
import matp... | markusrademacher/datahandling | optoanalysis/optoanalysis/optoanalysis.py | Python | mit | 189,500 | [
"Avogadro"
] | 50826a1784505b9fccc8fc945e2d057c4ffa77e7f87975b343b95be421674e76 |
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Eric Martin <eric@ericmart.in>
# Giorgio Patrini <giorgio.patrini@anu.edu.au>
# ... | vortex-ape/scikit-learn | sklearn/preprocessing/data.py | Python | bsd-3-clause | 106,915 | [
"Gaussian"
] | c22ffb44479b6480790290b281f6c6902a6f804431a7b28540caa223ccba03ef |
from __future__ import unicode_literals
import logging
import collections
import datetime
import json
import random
import dateutil.parser
import django.contrib.messages
import django.urls
import django.http
import django.shortcuts
import django.views.generic.edit
import django.forms
import django.utils
from django.c... | ORGAN-IZE/register | registration/views.py | Python | gpl-3.0 | 43,982 | [
"VisIt"
] | 239ea1f254801ae54d75305915a1d0dd8381a6a85bfba318f7804b73ce4fff76 |
""" A very simple FCFF NN intended to be used for comparing theano to other
libraries. """
from six.moves import cPickle as pickle
import logging
import sys
import theano
import theano.ifelse
import theano.tensor as TT
import numpy as np
import learning_rates
import utils
logger = logging.getLogger(__name__)
c... | djpetti/rpinets | theano/simple_feedforward.py | Python | mit | 23,800 | [
"Gaussian"
] | 4855cf44c747d9ce885bd2c00d7c794c62d7f3ff5a1301b4bfce0ab17e9568ca |
import pytest
from distutils.version import LooseVersion
from cfme.utils.log import logger
from cfme.utils.providers import ProviderFilter, list_providers
from markers.env import EnvironmentMarker
ONE = 'one'
ALL = 'all'
LATEST = 'latest'
ONE_PER_VERSION = 'one_per_version'
ONE_PER_CATEGORY = 'one_per_category'
ONE... | okolisny/integration_tests | markers/env_markers/provider.py | Python | gpl-2.0 | 8,988 | [
"VisIt"
] | 5f440508f670901becb1fd237d0b82950d584d14035dad2086d7e03049826025 |
# Copyright (C) 2003-2005 Peter J. Verveer
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# 1. Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following d... | sargas/scipy | scipy/ndimage/fourier.py | Python | bsd-3-clause | 9,818 | [
"Gaussian"
] | f9b5204f3422167a0e03241e9ac39e285ae7d45c15f4a076943c6aff606a0f09 |
# Copyright 2003-2009 by Bartek Wilczynski. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
Module containing different tools for sequence motif analysis.
it contains the co... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/Motif/__init__.py | Python | gpl-2.0 | 4,623 | [
"Biopython"
] | c35d73554269ec1009e237ceda28050de8838980cfd208dfade5dd981c5f78c5 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Test the kernel functions K. Every kernel function is a radial basis function,
i.e. it's a composition of a norm and a function defined on positive reals.
"""
import numpy as np
import scipy
from scipy.integrate import quad
from KDEpy.BaseKDE import BaseKDE
from KDEpy.... | tommyod/KDEpy | KDEpy/tests/test_kernel_funcs.py | Python | gpl-3.0 | 7,633 | [
"Gaussian"
] | b0a0ed3593829b6ff9430da29b68fdff667343bb8b31a304f7cbb2f774d5a39b |
from math import *
from random import *
import numpy as np
import xml.etree.ElementTree as et
import sys, getopt, time
import pytz
from datetime import *
from dateutil import parser
ZULU_FMT="%Y-%m-%dT%H:%M:%SZ"
KML_URL="http://earth.google.com/kml/2.2"
def parseTimeToUTC(time_string, time_zone):
src_time = par... | craigulmer/rungen | rungen.py | Python | mit | 9,773 | [
"VisIt"
] | 1b4504ef73ea99db173cc64c9b1cd9aa6e3a529873bd4285523587155e3ca9a3 |
#!/usr/bin/env python3
#
# average_nucleotide_identity.py
#
# This script calculates Average Nucleotide Identity (ANI) according to one of
# a number of alternative methods described in, e.g.
#
# Richter M, Rossello-Mora R (2009) Shifting the genomic gold standard for the
# prokaryotic species definition. Proc Natl Aca... | peterjc/pyani | bin/average_nucleotide_identity.py | Python | mit | 35,651 | [
"BLAST",
"Biopython"
] | ca05bd932893ec63228c1be957f41155c9115a614b16890c3e175f4f960bd0e7 |
"""
How much do you win if you never lose a bet?
How to detect if someone is winning all the
bets so you can throw them out of the casino?
"""
#
#
# THIS IS A SOLVED SOLUTION. DON'T EDIT.
#
# If this is an interview, don't read this until you've solved your version.
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
#
... | matthewdeanmartin/kata-python | solved/kata/never_lose/main.py | Python | gpl-3.0 | 1,091 | [
"CASINO"
] | b0a6dc021ba48d7e7973c0ca67946e92d865719b537dbaed07680a6a7324ae77 |
from datetime import datetime
import re
import traceback
import warnings
import numpy as np
import pandas as pd
from collections import defaultdict
from pandas.tslib import OutOfBoundsDatetime
from .core import indexing, ops, utils
from .core.formatting import format_timestamp, first_n_items
from .core.variable impor... | clarkfitzg/xray | xray/conventions.py | Python | apache-2.0 | 34,675 | [
"NetCDF"
] | 96cde2fda7e3403ab22eb77ec791673b5446084462b8798033657bd584fadbec |
# -*- coding: utf-8 -*-
import csv
from time import sleep
from django.contrib.auth.models import Group, User, Permission
from django.contrib.contenttypes.models import ContentType
from lettuce import step, world
from rapidsms.contrib.locations.models import LocationType
from survey.features.page_objects.accounts import... | antsmc2/mics | survey/features/upload_location-steps.py | Python | bsd-3-clause | 5,643 | [
"VisIt"
] | eb547631da60edcb6d763f7c69cfe4ad4397b5e97621fa96d782c9e15767a54b |
# Copyright 2013-2019 The Meson development team
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agree... | becm/meson | mesonbuild/dependencies/misc.py | Python | apache-2.0 | 18,581 | [
"NetCDF"
] | 2bfe4f766cec430cc65be72b7ee281fe4d3612d982b2377ca1848e690853ae36 |
'''benchmark pysam BAM/SAM access with the samtools commandline tools.
samtools functions are called via the pysam interface to avoid the over-head
of starting additional processes.
'''
import pysam
import timeit
iterations = 10
def runBenchmark( test,
pysam_way,
samtools_way =... | pkaleta/pysam | tests/pysam_bench.py | Python | mit | 1,328 | [
"pysam"
] | a29f709ac60b7bb0ce47fb65988c0396fcbcbf298a7068b8a09184beeaf9310d |
import src
import random
class Shocker(src.items.Item):
"""
ingame item used as ressource to build bombs and stuff
should have the habit to explode at inconvienent times
"""
type = "Shocker"
def __init__(self):
"""
set up internal state
"""
super().__init__(di... | MarxMustermann/OfMiceAndMechs | src/itemFolder/military/shocker.py | Python | gpl-3.0 | 1,603 | [
"CRYSTAL"
] | 2121c1e5b68e0a04909cb1458cc67c9c67a6742941822387c0dbeb5daf6787a7 |
# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""Unit tests for the :mod:`iris.fileformats.netcdf` module."""
| pp-mo/iris | lib/iris/tests/unit/fileformats/netcdf/__init__.py | Python | lgpl-3.0 | 257 | [
"NetCDF"
] | 8a110a6018f32f6b8ce9bfb95f1ea7c8da47d29059be71dfc122c9db0155c4ac |
# -*- coding: utf-8 -*-
"""
Created on Wed May 4 10:33:14 2016
@author: Jeremy Nowell and Gordon Gibb
"""
from __future__ import print_function
import Queue
from threading import Thread
import subprocess
import time
import os
import chimera
import stat
WORKING_DIR = '/Users/ggibb2/Projects/CP2K'
WORKING_DIR= '/User... | gpsgibb/Tetr-Chimera_plugin | __init__.py | Python | bsd-2-clause | 14,124 | [
"CP2K"
] | db30e4d455987b65fd9a3985841cb6624f056d564b4fd1dc256a89fe5c7518c3 |
import sys
import logging
import os
import pandas as pd
import glob
import numpy as np
class BfactorMapper:
def __init__(self, reference_pdb, dataframe, outdir=None, column=None):
'''
Map calculated B-Factors onto pdb structure.
Use only as Context manager (see Example).
Args:
... | pocin/BioModelTools | biomodeltools/MD/bfactors.py | Python | mit | 6,153 | [
"CRYSTAL"
] | 29630b7af877e060d48c23cedfd8b88ef8a592faf5943699501203d0c2959e6f |
#!/usr/bin/python
# Copyright: (c) 2017, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
'status': ['sta... | nrwahl2/ansible | lib/ansible/modules/files/xattr.py | Python | gpl-3.0 | 6,314 | [
"Brian"
] | d48d737cbeb1f2189cdb3b649816035865e26b3e6df6c08d321311b826c1db99 |
#!/usr/bin/env python
import sys
import os
import pysam
import gzip
from argparse import ArgumentParser
from collections import defaultdict
def consensus_caller(input_reads, cutoff, tag, length_check):
nuc_identity_list = [0, 0, 0, 0, 0, 0] # In the order of T, C, G, A, N, Total
nuc_key_dict = {0: '... | risqueslab/CRISPR-DS | UnifiedConsensusMaker.py | Python | bsd-3-clause | 14,060 | [
"pysam"
] | 13ccb3e2ac3b70ba8273bc6b98b5ae595b00fa0fbdf4ab318f6d808c8f96ddaa |
import numpy as np
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
import matplotlib.gridspec as gridspec
from mpl_toolkits.axes_grid1 import make_axes_locatable
import matplotlib.offsetbox as offsetbox
from matplotlib.ticker import MultipleLocator
from matplotlib.patches import Ellipse
from . ... | Gabriel-p/mcs_rot_angles | modules/make_all_plots.py | Python | gpl-3.0 | 24,142 | [
"Galaxy"
] | 247876c631cf9972efbb21f29f5d32ad61724c9566cafa7eb48ce462c30cd91d |
# Copyright 2008-2015 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | caio2k/RIDE | src/robotide/lib/robot/reporting/xunitwriter.py | Python | apache-2.0 | 3,435 | [
"VisIt"
] | 2271c0050f6bceda157ea4ce5d384d441234c46c5622a3cbe6a50ed04557ec3d |
#!/usr/bin/env python3
# Copyright (c) 2018 The Bitcoin Core developers
# Distributed under the MIT software license, see the accompanying
# file COPYING or http://www.opensource.org/licenses/mit-license.php.
"""Verify commits against a trusted keys list."""
import argparse
import hashlib
import logging
import os
impor... | thelazier/dash | contrib/verify-commits/verify-commits.py | Python | mit | 8,165 | [
"Octopus"
] | 39f450428108636335348caf1045236e1800502f60e69298e0daf46ddfc5e492 |
""" This is a test of the chain
ProductionClient -> ProductionManagerHandler -> ProductionDB
It supposes that the DB is present, and that the service is running
"""
import DIRAC
DIRAC.initialize() # Initialize configuration
import unittest
import json
from DIRAC.ProductionSystem.Client.ProductionClient imp... | DIRACGrid/DIRAC | tests/Integration/ProductionSystem/Test_Client_Production.py | Python | gpl-3.0 | 1,901 | [
"DIRAC"
] | 603f598bc5297af5469f3f27a14cf6cfc6d44580648c5bf7ec3099188d6b7fff |
"""pagesizes.py
This module defines a few common page sizes in PIDDLE units (1/72 inch).
"""
from rdkit.sping.pid import cm, inch
_W, _H = (21 * cm, 29.7 * cm)
A6 = (_W * .5, _H * .5)
A5 = (_H * .5, _W)
A4 = (_W, _H)
A3 = (_H * 2, _W)
A2 = (_W * 2, _H * 2)
A1 = (_H * 4, _W * 2)
A0 = (_W * 4, _H * 4)
letter = (8.5 ... | bp-kelley/rdkit | rdkit/sping/pagesizes.py | Python | bsd-3-clause | 600 | [
"RDKit"
] | cd847c559da5238d9f3176b52c8e7ff8599f7af257aed5d51a2a90531f126006 |
import numpy as np
from time import time, ctime
from datetime import timedelta
from ase.lattice import bulk
from ase.units import Hartree
from gpaw import GPAW, FermiDirac
from gpaw.response.gw import GW
from gpaw.mpi import serial_comm
starttime = time()
a = 5.431
atoms = bulk('Si', 'diamond', a=a)
kpts = (2,2,2)
... | robwarm/gpaw-symm | gpaw/test/gw_method.py | Python | gpl-3.0 | 1,439 | [
"ASE",
"GPAW"
] | fbec5bed55c0d77ce339383f63d95d70767c215d7de7557508761bd6e5a3b687 |
# -*- coding: utf-8 -*-
import datetime
import json
import os
from django.conf import settings
from django.core.urlresolvers import reverse
import mock
from nose.tools import eq_, ok_
from pyquery import PyQuery as pq
import mkt
from mkt.constants.applications import DEVICE_TYPES
from mkt.files.tests.test_models imp... | shahbaz17/zamboni | mkt/submit/tests/test_views.py | Python | bsd-3-clause | 39,359 | [
"exciting"
] | ae6b48f33d1164074e4ca5ec605492f421ae590061a977dd748628a8f9ecd89f |
#
# Copyright (C) 2003 Greg Landrum and Rational Discovery LLC
#
""" defines class _DbResultSet_ for lazy interactions with Db query results
**Note**
this uses the Python iterator interface, so you'll need python 2.2 or above.
"""
from __future__ import print_function
import sys
from rdkit.Dbase import DbInfo
c... | adalke/rdkit | rdkit/Dbase/DbResultSet.py | Python | bsd-3-clause | 6,090 | [
"RDKit"
] | a15b108755d02fbd8cae506a748d7909fe852faa34851a8188c242664b0ccb38 |
# -*- coding: utf-8 -*-
""" texte doc """
import Ulysse_utils as U
import os, sys, random
try:
import pysam
except ImportError:
print "\tError: Pysam is not installed. \n\
Please see: https://github.com/pysam-developers/pysam\n\n"
sys.exit()
import operator
import datetime
try:
import networkx as... | gillet/ulysses | sv_inter.py | Python | gpl-3.0 | 109,371 | [
"pysam"
] | e7d0bf018632e70bf522ecedf36cd97dc1a51f839e167f9eeb1fa6dd8cf6b698 |
# -*- coding: utf-8 -*-
import logging
from operator import itemgetter, or_
from clang.cindex import Config, CursorKind, Index
class AnalyzerError(Exception):
pass
class Prototype(object):
def __init__(self, node):
self.node = node
@property
def code(self):
return_type = self.node.t... | tlk-emb/SWORDS | python/analyzer/designparam.py | Python | mit | 7,652 | [
"VisIt"
] | 8035d6a570b2f1f1aabab453cc8f6d33332a6174b9576418a2a4aeb572244a10 |
import os
import signal
import http.client
import logging
import copy
import base64
from types import SimpleNamespace
from tornado.ioloop import IOLoop
from tornado.web import Application, RequestHandler, RedirectHandler, \
HTTPError, authenticated, asynchronous
from tornado.websocket import WebSocketHandler
from ... | wirefish/amber | amber/server.py | Python | bsd-3-clause | 6,740 | [
"Amber"
] | 47e202fc1348dff89bebf2ab754927a7f942d72936403311f286e92a40ab26f3 |
import numpy as np
import math
import logging as log
class RandomVariable(object):
""" Base class, should not be instantiated """
def __init__(self, dimension=1):
self._dimension = dimension
def evaluate(self, x):
raise TypeError("Dummy base class")
def sample(self):
raise T... | mdbenito/ModelSelection | src/RandomVariables.py | Python | gpl-3.0 | 7,813 | [
"Gaussian"
] | c89eadf0bf4ab3805c4177bc8146c17176d7f21b73f80c16bab825f7364761f9 |
# Begin CVS Header
# $Source: /Volumes/Home/Users/shoops/cvs/copasi_dev/copasi/sbml/unittests/scripts/rewriteXML.py,v $
# $Revision: 1.1 $
# $Name: $
# $Author: gauges $
# $Date: 2008/01/28 14:33:50 $
# End CVS Header
# Copyright (C) 2008 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc... | jonasfoe/COPASI | copasi/sbml/unittests/scripts/rewriteXML.py | Python | artistic-2.0 | 776 | [
"COPASI"
] | 9d5c9b6315b05d50c02a146a4eb18866fc98aa207a46bf768d1e01b2657a146b |
#
# Copyright (C) 2008, Brian Tanner
#
#http://rl-glue-ext.googlecode.com/
#
# Licensed under the Apache License, Version 2.0 (the "License")
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless require... | okkhoy/rlglue-python3-codec | src/tests/test_message_experiment.py | Python | apache-2.0 | 2,454 | [
"Brian"
] | eb988d5be2acbaf246f50ecafd1b8b2fd1cd3188f94ff5a8f40cb5f555011f94 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | zasdfgbnm/tensorflow | tensorflow/contrib/py2tf/converters/break_statements.py | Python | apache-2.0 | 3,983 | [
"VisIt"
] | 90009e062aa3e9876b1d5540d97739a87e9d25fbbad143f4fb433c61a89e0cbd |
from collections import abc, Counter
from .contact_map import ContactFrequency, ContactObject
# Split this out of the to prevent code duplication for DaskContactTrajectory
def _build_contacts(contact_object, trajectory):
"""Make a contact map for every frame in trajectory.
Parameters
----------
cont... | dwhswenson/contact_map | contact_map/contact_trajectory.py | Python | lgpl-2.1 | 13,666 | [
"MDTraj"
] | 9bb38891c5319e35278decd02be31a9f19657a89178d55fc802e1a4912f26a93 |
import csv
import logging
import sys
from collections import Counter
from csv import DictReader
from io import StringIO
import pytest
import yaml
from mappy import revcomp
from micall.core import project_config
from micall.core.aln2counts import InsertionWriter, SequenceReport, combine_region_nucleotides, \
combi... | cfe-lab/MiCall | micall/tests/test_aln2counts_report.py | Python | agpl-3.0 | 105,714 | [
"BLAST"
] | ee2b3165bed4945974fc27cee6375bb85148ebcc745437beb684ff1407ca76d2 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGtrellis(RPackage):
"""Genome Level Trellis Layout.
Genome level Trellis graph vi... | iulian787/spack | var/spack/repos/builtin/packages/r-gtrellis/package.py | Python | lgpl-2.1 | 1,528 | [
"Bioconductor"
] | 50728884880508ef82ae7319de981f500627a33450a076309c7ff2b080eebd0d |
#!/usr/bin/env python
# Copyright (C) Duncan Macleod (2014)
#
# This file is part of GWpy.
#
# GWpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | andrew-lundgren/gwpy | examples/table/rate_binned.py | Python | gpl-3.0 | 2,157 | [
"Gaussian"
] | 7bfb74c85fd914c695310dc750afe1d55ca46470df0228d7c02c1b962ab0a7c2 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2014 Martin Raspaud
# Author(s):
# Martin Raspaud <martin.raspaud@smhi.se>
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, eit... | TAlonglong/trollduction-test | trollduction/tests/test_xml_read.py | Python | gpl-3.0 | 4,230 | [
"NetCDF"
] | dccb69dc1f091333828567c26e22825ecfc9051e903ac7bb13ce01a276402867 |
# pylint: disable=bad-continuation
"""
Certificate HTML webview.
"""
from datetime import datetime
from uuid import uuid4
import logging
import urllib
from django.conf import settings
from django.contrib.auth.models import User
from django.http import HttpResponse, Http404
from django.template import RequestContext
fr... | ampax/edx-platform | lms/djangoapps/certificates/views/webview.py | Python | agpl-3.0 | 28,036 | [
"VisIt"
] | 8a485401e14651d9a8cd7d66220ab0e62be6dd5176211cda8408b7fde5ff69ce |
""" Code allowing tools to define extra files associated with an output datset.
"""
import os
import re
import glob
import json
from galaxy import jobs
from galaxy import util
from galaxy.util import odict
DATASET_ID_TOKEN = "DATASET_ID"
DEFAULT_EXTRA_FILENAME_PATTERN = r"primary_DATASET_ID_(?P<designation>[^_]+)_(?... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/tools/parameters/output_collect.py | Python | gpl-3.0 | 11,211 | [
"Galaxy"
] | 2a9b95045618783839c658ebde832cab856c0eb0474b15ce8a0095adcac79c4e |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | skosukhin/spack | var/spack/repos/builtin/packages/r-ape/package.py | Python | lgpl-2.1 | 2,633 | [
"Bioconductor"
] | 4a8e2915bcc4b351a3025502f09bf7494390f3755ae0f9f9c1e792ac1c671d4b |
#
# Copyright (c) 2010 Brian E. Granger
#
# This file is part of pyzmq.
#
# pyzmq is free software; you can redistribute it and/or modify it under
# the terms of the Lesser GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option)... | takluyver/pyzmq | zmq/tests/test_poll.py | Python | lgpl-3.0 | 5,721 | [
"Brian"
] | 9cc6c3b61f240f8a30ca45dedae83f2dcd7fa13da67749603c71270f119047a8 |
import sys
from sympy import symbols,sin,cos
from printer import xdvi,Get_Program,Print_Function,Format
from mv import MV
def Maxwells_Equations_in_Geometric_Calculus():
Print_Function()
X = symbols('t x y z')
(g0,g1,g2,g3,grad) = MV.setup('gamma*t|x|y|z',metric='[1,-1,-1,-1]',coords=X)
I = MV.I
... | rschwiebert/galgebra | examples/Old Format/physics_check_latex.py | Python | bsd-3-clause | 3,069 | [
"DIRAC"
] | f566ebb1bb353cf327bd46685737b392b5b70655713fa29b249ed24f17a5570e |
import os
import sys
import types
import re
from numpy.core.numerictypes import issubclass_, issubsctype, issubdtype
from numpy.core import product, ndarray, ufunc
__all__ = ['issubclass_', 'issubsctype', 'issubdtype',
'deprecate', 'deprecate_with_doc', 'get_numarray_include',
'get_include', 'info', '... | pelson/numpy | numpy/lib/utils.py | Python | bsd-3-clause | 36,451 | [
"VisIt"
] | 64d1e5509443e94ba64b44dc3706662b4cd3def7e72621932526558bd8d81569 |
# $Id$
#
# Copyright (C) 2003-2006 Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" Unit Test code for Fragment Descript... | soerendip42/rdkit | rdkit/Chem/UnitTestFragmentDescriptors.py | Python | bsd-3-clause | 8,417 | [
"RDKit"
] | d02afc4afe9b34b38351af0149d058fa52c74c71556e107b907273efc288de5d |
# -*- coding: utf-8 -*-
#
# DAX documentation build configuration file, created by
# sphinx-quickstart on Tue Jan 12 14:43:53 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All c... | MattVUIIS/dax | docs/conf.py | Python | mit | 9,573 | [
"Brian"
] | 507c3ae5b09c99164b0043796b5bc5d8944fbf526cffcdf081eb74d9386d84e7 |
"""
Inference for GP regression.
"""
from __future__ import division
from __future__ import absolute_import
from __future__ import print_function
import numpy as np
import scipy.stats as ss
import warnings
from ...utils.misc import rstate
from ...utils import linalg as la
from .._core import ParameterizedModel
from... | mwhoffman/reggie | reggie/models/gp/gp.py | Python | bsd-2-clause | 10,275 | [
"Gaussian"
] | e7bc0461bf1e4a24f1e3cfdd7582231cdeb78263e20c9267547b4629858760ca |
import time
import djisdkpy
user_prompt = "\n" + \
"|------------------DJI Onboard SDK Interactive Sample------------|\n" + \
"| |\n" + \
"| The interactive mode allows you to execute a few commands |\n" + \
"| to help you get a feel of the DJ... | drmaj/dji-sdk-python | djisdk-sample.py | Python | gpl-3.0 | 4,694 | [
"VisIt"
] | 3cc9fd8beeb82df84ca52f4eb5ab0b9d95b4fd44081003d62ffe3c5a2c978d08 |
# TODO check num_threads before testing / 8 for Cisco Server
# TODO ATTTENTION! Maybe there are some mistakes in neuron parameters! Write to alexey.panzer@gmail.com.
from func import *
logger = logging.getLogger('neuromodulation')
startbuild = datetime.datetime.now()
nest.ResetKernel()
nest.SetKernelStatus({'overwri... | magnastrazh/NEUCOGAR | nest/dopamine/integrated/scripts/neuromodulaton.py | Python | gpl-2.0 | 7,639 | [
"NEURON"
] | 415aefd13e6603dccc0169715089b7371977f6ff70699dc4641a4786bc5bee87 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | daviddesancho/mdtraj | mdtraj/formats/openmmxml.py | Python | lgpl-2.1 | 2,834 | [
"MDTraj",
"OpenMM"
] | 40a11b1a60773dc4494394c6ff4a3eda77effad00b882cf14ec17d42347e3f27 |
"""
[2014-12-28] Challenge #195 [Easy] Symbolic Link Resolution
https://www.reddit.com/r/dailyprogrammer/comments/2qmz12/20141228_challenge_195_easy_symbolic_link/
# [](#EasyIcon) **(Easy)**: Symbolic Link Resolution
Many Unix-based systems support the concept of a **symbolic link**. This is where one directory name ... | DayGitH/Python-Challenges | DailyProgrammer/DP20141228A.py | Python | mit | 3,692 | [
"VisIt"
] | 3f79896a2b16e60f99fed9f06aada8dc5d1ad1bb4e0ef5622c8c93f17b99e2c6 |
# ----------------------------------------------------------------------
# Numenta Platform for Intelligent Computing (NuPIC)
# Copyright (C) 2014-2016, Numenta, Inc. Unless you have an agreement
# with Numenta, Inc., for a separate license for this software code, the
# following terms and conditions apply:
#
# This p... | subutai/nupic | src/nupic/algorithms/anomaly_likelihood.py | Python | agpl-3.0 | 28,597 | [
"Gaussian"
] | 423dc656e2344abe31d26df3a5b310eb180467ab5f6a07aa251d392d99238c81 |
# #
# Copyright 2009-2016 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (... | hpcleuven/easybuild-framework | easybuild/tools/filetools.py | Python | gpl-2.0 | 49,278 | [
"NetCDF"
] | 49f885949b98b4f2cb90434cab808be48f0ee0faee7a04f7785b18c2e946ddf3 |
"""Check for abnormally high rmsd values to a reference structure
{{header}}
Meta
----
depends:
- meta.pandas.pickl
- trajs
- top.pdb
"""
import mdtraj as md
from msmbuilder.io import load_meta, itertrajs, save_trajs
## Load reference structure
ref = md.load("top.pdb")
meta = load_meta()
## Do calculation ... | Eigenstate/msmbuilder | msmbuilder/project_templates/rmsd/rmsd.py | Python | lgpl-2.1 | 425 | [
"MDTraj"
] | 6cf6453a537aa9944bc2ead6e8510c4c0dce40902948b58bf4832aada3bdeed4 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import json
from math import sin, cos, asin, pi, degrees, radians
import numpy as np
from pymatgen.symmetry.analyzer import SpacegroupAnalyzer
from .core import DiffractionPattern, AbstractDiffrac... | dongsenfo/pymatgen | pymatgen/analysis/diffraction/xrd.py | Python | mit | 11,339 | [
"CRYSTAL",
"pymatgen"
] | fedcad40b6a50f19d6706a0949c47b832df0ab5256873814964a8fee7a07ffc0 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/enigma2-plugin-extensions-openwebif | plugin/controllers/views/web/epgservicenext.py | Python | gpl-2.0 | 7,578 | [
"VisIt"
] | 5d0faade2f791b0a1ae68db9bb26cf6a1b9a34fd49dcd65d5e188b4366f0e1a1 |
from cardboard import types
from cardboard.ability import (
AbilityNotImplemented, spell, activated, triggered, static
)
from cardboard.cards import card, common, keywords, match
@card("Necrotic Plague")
def necrotic_plague(card, abilities):
def necrotic_plague():
return AbilityNotImplemented
de... | Julian/cardboard | cardboard/cards/sets/magic_2011.py | Python | mit | 20,075 | [
"CRYSTAL"
] | c5470a4602d875407a42c96285a21f325d62d1c77ff25c20d0963faa505b50b4 |
# -*- coding: utf-8 -*-
########################################## Declaration ######################################################
# Declaration:
# tcaxPy.pyc's source code
# Copyright (c) 2008 - 2012 milkyjing (milkyjing@gmail.com). All rights reserved.
# Please visit tcax.rhacg.com to get the latest informatio... | milkyjing/TCAX | src/TCAX/tcax/tcaxPy/tcaxPy.py | Python | gpl-3.0 | 36,327 | [
"VisIt"
] | 4fa73394411dee721e52b956540a0f89bcbbf11b67fa1d9d6824029948fbff41 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Cypress -- C++ Spiking Neural Network Simulation Framework
# Copyright (C) 2016 Andreas Stöckel
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | hbp-unibi/cypress | scripts/plot_synfire.py | Python | gpl-3.0 | 2,908 | [
"NEURON"
] | d8df439e99cccdb9bc249821972dd0e1f81254d90039a034f53948b997a1dde4 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
'''
1563. Bayan
Time limit: 1.0 second
Memory limit: 64 MB
[Description]
As everybody knows, there are a lot of stores in skyscrapers, it's the favourite
place of glamorous girls. Blonde Cindy loves only one thing — the shopping. Today
is one of the best days, she's going sho... | matrixjoeq/timus_solutions | 1563/slu.py | Python | mit | 1,466 | [
"VisIt"
] | 086b3b48fc3d4aab76e431bc34b6018c641b75323d07f83870eb82c041b08abf |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | psci2195/espresso-ffans | samples/save_checkpoint.py | Python | gpl-3.0 | 2,411 | [
"ESPResSo"
] | 9de64cd49d37957944ec58febb4a1ba442c8768617fd8580d7e076a9cbe58322 |
class Supernova():
"""
Has the following properties
g (LightCurve)
r (LightCurve)
i (LightCurve)
z (LightCurve)
lcsDict (dictionary) 4 entries, g,r,i,z returning the corresponding
LightCurves
... | mdepasca/miniature-adventure | classes_dir/supernova.py | Python | unlicense | 5,631 | [
"Galaxy"
] | 4b3eb440cd014a8b24af2a4d5929d035dbebf196d631add05e1f857c0f534fc2 |
#!/usr/bin/env python3
# dstc client side
# Copyright (C) 2018 Jaguar Land Rover
#
# All rights reserved.
#
import re
import struct
import sys
import dstc
import vsd
from . import IPC
import logging
import os
import string
from threading import Thread
import time
import struct
verbose = True
fifo_fd = None
signals = ... | GENIVI/vehicle_signal_manager | ipc/rmc_ipc.py | Python | mpl-2.0 | 7,824 | [
"Jaguar"
] | 48f685190aec12bd48bcba309f32c44e96bf8b70fbf1881a4a28a7b3beee0b8b |
#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Thu Apr 19 18:51:06 2018
@author: rachel
"""
import os
import time
import yaml
import numpy as np
import glob
try:
import dill as cpl
except(ImportError):
import cPickle as cpl
from hexrd.xrd import material
from hexrd import config
from hexr... | joelvbernier/hexrd-sandbox | multipanel_ff/lat_parm_from_powder.py | Python | gpl-3.0 | 9,706 | [
"Gaussian"
] | 631d3ef814a173e100c4bae18eb9c04c71ec62bcba9710e4bdeb04373bce29f7 |
#!/usr/bin/env python
# Various functions for TFCE_mediation
# Copyright (C) 2016 Tristram Lett, Lea Waller
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of ... | trislett/TFCE_mediation | tfce_mediation/pyfunc.py | Python | gpl-3.0 | 98,480 | [
"Gaussian"
] | 5a44c61df6921680756e92ca9769690447ab37112e8dc904577bcf96bb421e04 |
import new
import sys
import tempfile
import os.path
import shutil
from test_toolbox import ToolTestCase
from base.interactor import build_interactor, stage_data_in_history
import logging
log = logging.getLogger( __name__ )
data_managers = None
class DataManagerToolTestCase( ToolTestCase ):
"""Test case that runs... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/test/functional/test_data_managers.py | Python | gpl-3.0 | 5,164 | [
"Galaxy"
] | 31efdcab07bafee9ad04f2a8d7d0188b1d13cbf997c2d5633127dab80ae796a9 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# isReactionaryBot.py
#
# Copyright 2015 Wyboth <www.reddit.com/u/Wyboth>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3... | Wyboth/isReactionaryBot | isReactionaryBot.py | Python | gpl-3.0 | 10,221 | [
"VisIt"
] | f45404b979edf1a2d5b3e5116a3ececd507734cf6bce6e920a3579f57e8338fd |
# -*- coding: utf-8 -*-
def VtkLoadKPts(setName, nmbContndr):
nmbContndr= vtk.vtkPoints()
eSet= preprocessor.getSets.getSet(setName)
eSet.numerate()
print("nombre set: ",eSet.nombre,"\n")
print("num. points: ",len(eSet.getPoints),"\n")
points= eSet.getPoints
for p in points:
nmbContndr.insert_point(p.... | lcpt/xc | python_modules/postprocess/xcVtk/CAD_model/vtk_load_kpoints.py | Python | gpl-3.0 | 377 | [
"VTK"
] | babe4d869407cf70f3c0283e5b51f87d797f8bfc60fc4702b67a17f052ce39f0 |
"""Hilbert spaces for quantum mechanics.
Authors:
* Brian Granger
* Matt Curry
"""
from __future__ import print_function, division
from sympy import Basic, Interval, oo, sympify
from sympy.core.compatibility import range
from sympy.printing.pretty.stringpict import prettyForm
from sympy.physics.quantum.qexpr import... | kaushik94/sympy | sympy/physics/quantum/hilbert.py | Python | bsd-3-clause | 19,601 | [
"Brian"
] | 325624f5ce8b6cfeb16d30b3e57744d06aeb1b805f87d6e970a39286f1bb644f |
# -*- coding: utf-8 -*-
#
# gap_junctions_two_neurons.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of t... | weidel-p/nest-simulator | pynest/examples/gap_junctions_two_neurons.py | Python | gpl-2.0 | 2,950 | [
"NEURON"
] | 59cc09dd796d54c846c8d9b43aa426897ace36669379a1b985499a7f73436efe |
# -*- coding: utf-8 -*-
from flask import Flask,request, url_for,render_template,session,redirect
import shelve
app = Flask(__name__)
app.secret_key = 'F12Zr47j\3yX R~X@H!jmM]Lwf/,?KT'
def addweb(url):
try:
if session['USER'] != None:
session['VISIT'].insert(session['COUNT'],url)
session['COUNT'] = session[... | insua1990/DAI | DAI-master/Flask/practica3.py | Python | gpl-3.0 | 4,264 | [
"VisIt"
] | 03120c00dc80dcf8d32e5cf96c9a2d9a6142123ff0db47af397aebd3cf5d6934 |
# -*- coding: UTF-8 -*-
'''
Module unicode_tex provides the map between unicode
characters and latex commands.
To convert a unicode character u to latex commands:
unicode_tex.unicode_to_tex_map.get(u, u)
Both unicode_to_tex_map and tex_to_unicode_map are dict
objects, generated from http://www.w3.org/Math/chara... | brigittebigi/proceed | proceed/src/utils/unicode_tex.py | Python | gpl-3.0 | 89,271 | [
"Bowtie"
] | 1bbdd07ff4aff831e29781c7ead7679303ada0b7aa6cc7bc2fb8b29e8d057c37 |
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | googleapis/python-vision | scripts/fixup_vision_v1p1beta1_keywords.py | Python | apache-2.0 | 5,942 | [
"VisIt"
] | 858346346e15ac17efba6541cab8f19f4f54e8396720f8bc4d088ea87da10d1b |
class Solution(object):
def exist(self, board, word):
"""
:type board: List[List[str]]
:type word: str
:rtype: bool
"""
def dfs(i, j, idx):
if board[i][j] != word[idx]:
return False
if idx == len(word)-1:
return ... | zqfan/leetcode | algorithms/79. Word Search/solution.py | Python | gpl-3.0 | 1,062 | [
"VisIt"
] | 39fcb6f7603619d3b3f143e16e80e09f85457ce70c4d63e17c89a11eff57925c |
# -*- coding: utf-8 -*-
"""
Created on Thu Oct 23 15:54:36 2014
This file is part of pyNLO.
pyNLO is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your optio... | ycasg/PyNLO | src/validation/Old and Partial Tests/ppln_phasematching.py | Python | gpl-3.0 | 2,044 | [
"CRYSTAL"
] | 4f291bcefccdc95cd5bb32086dd6af5fc99ac1221b47fe622f211b875604260a |
# -*- coding: utf-8 -*-
#
# Natural Language Toolkit: Snowball Stemmer
#
# Copyright (C) 2001-2012 NLTK Project
# Author: Peter Michael Stahl <pemistahl@gmail.com>
# Peter Ljunglof <peter.ljunglof@heatherleaf.se> (revisions)
# Algorithms: Dr Martin Porter <martin@tartarus.org>
# URL: <http://www.nltk.org/>
# Fo... | abad623/verbalucce | verbalucce/nltk/stem/snowball.py | Python | apache-2.0 | 150,194 | [
"ASE"
] | 8b2a46ad2cc81676f16ac04ccec630edd1978279922fa5f153bfa8bd159d3d00 |
from __future__ import absolute_import
from __future__ import print_function
import matplotlib.pyplot as plt
import autograd.numpy as np
import autograd.numpy.random as npr
import autograd.scipy.stats.multivariate_normal as mvn
import autograd.scipy.stats.norm as norm
from autograd import grad
from optimizers import ... | kcarnold/autograd | examples/black_box_svi.py | Python | mit | 3,262 | [
"Gaussian"
] | dd6a4b6f6d3c9971fa3fefa7a7b2a7f32394ade66db416e8c67ae8f00180fefb |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | retrography/scancode-toolkit | src/commoncode/filetype.py | Python | apache-2.0 | 7,432 | [
"VisIt"
] | 9aefb47a305eb597078f6b8560eae10fec5c5134cc19558285cfaf1a548dfdbe |
# Copyright 2018 Open Source Robotics Foundation, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | ros2/launch | launch/test/launch/actions/test_group_action.py | Python | apache-2.0 | 9,270 | [
"VisIt"
] | 9f645ee65a3539069eba0e3f54caefb0f296b3a543977e566ef042e87ab3fc37 |
import pyfftw
import numpy as np
import tomviz.operators
import time
class ReconConstrintedDFMOperator(tomviz.operators.CancelableOperator):
def transform_scalars(self, dataset, Niter=None, Niter_update_support=None,
supportSigma=None, supportThreshold=None):
"""
3D Reco... | cryos/tomviz | tomviz/python/Recon_DFT_constraint.py | Python | bsd-3-clause | 9,005 | [
"VTK"
] | 3644160e130670fcb2dfdea0ccffa5a802b57d11d911c2c0617fc17efec35482 |
# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
import frappe
from frappe.model.utils.rename_field import rename_field
from frappe.modules import scrub, get_doctype_module
rename_map = {
"Opportunity": [
["enquiry_details", "items"]
],... | mahabuber/erpnext | erpnext/patches/v5_0/rename_table_fieldnames.py | Python | agpl-3.0 | 6,629 | [
"VisIt"
] | 44cdc8efd3fb1019687915432c6656ba4a151408f0d1a1f93e787bba94548919 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | modules/tensor_mechanics/doc/tests/create_vtr.py | Python | lgpl-2.1 | 3,442 | [
"MOOSE",
"VTK"
] | 7efdb482bf3394ea849521d5e79db6bf06a1f9cef686b69001c0eac4a225fe34 |
#!/usr/bin/env python
# encoding: utf-8
"""
block.py
Created by Pete Aykroyd on 2010-06-21.
Copyright (c) 2010 Spring Partners. All rights reserved.
Visit http://springpadit.com/api/oauth-register-app to get your develope tokens
"""
import logging
import urllib, httplib2, uuid, time, calendar, sys
import oauth
from ... | rmoskal/e-springpad | springpad.py | Python | mit | 23,753 | [
"VisIt"
] | 2387aa78bb969081d2be86e64a858bf1a20b57c16a7f59280845d6b0d656506e |
from test import support
import unittest
import codecs
import sys, _testcapi, io
class Queue(object):
"""
queue: write bytes at one end, read bytes from the other end
"""
def __init__(self, buffer):
self._buffer = buffer
def write(self, chars):
self._buffer += chars
... | edmundgentle/schoolscript | SchoolScript/bin/Debug/pythonlib/Lib/test/test_codecs.py | Python | gpl-2.0 | 65,341 | [
"FEFF"
] | 627679817f07b333bce1647d9879d64cf6f9e904ee3da3edb3f7f6e434a59415 |
"""
../wps.py?request=execute
&service=wps
&version=1.0.0
&identifier=esmvaltool-perfmetrics
&status=true
&storeExecuteResponse=true
"""
import datetime
import shutil
import netCDF4
import urlparse
from pywps.Process import WPSProcess
import os
import logging
from jinja2 import FileSystemLoader, Environment,select... | c3s-magic/adaguc-services-esmvaltool-wps | processes/esmvaltool-taylor.py | Python | apache-2.0 | 9,854 | [
"NetCDF"
] | d6e9bd38a6185b14b4229b29c49a3cdd335bff5c06d3515423774f4baf67629b |
from __future__ import unicode_literals
MAPIT_BASE_URL = 'http://mapit.democracyclub.org.uk/'
SITE_OWNER = 'Democracy Club'
COPYRIGHT_HOLDER = 'Democracy Club Limited'
PEOPLE_LIABLE_TO_VANDALISM = {
2811, # Theresa May
1120, # Jeremy Corbyn
4546, # Boris Johnson
6035, # Paul Nuttall
8372, # Nicol... | mysociety/yournextmp-popit | elections/uk/settings.py | Python | agpl-3.0 | 3,948 | [
"Amber"
] | 7b6ad6b1f9e526eb1884c3c320a087826782808337b2fd13391ca0a7411ac95b |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publish... | thica/ORCA-Remote | src/ORCA/Skin.py | Python | gpl-3.0 | 6,929 | [
"ORCA"
] | 4ec398f08f9209361e3334ffc95f982281fcb3683ce392ff9a759721600b28fb |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/interaction/TersoffPairTerm.py | Python | gpl-3.0 | 4,962 | [
"ESPResSo"
] | 169cce4c0f2667de4631184c2d01cf5eb28b7719fc76e2e2169e1da7b06c88e6 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import gzip
import json
import os
import unittest
import warnings
import xml.etree.ElementTree as ET
from pathlib import Path
from shutil import copyfile, copyfileobj
import numpy as np
import pytest
from monty.tempfile impo... | vorwerkc/pymatgen | pymatgen/io/vasp/tests/test_outputs.py | Python | mit | 89,873 | [
"VASP",
"Wannier90",
"pymatgen"
] | 6bc446b3be796ccc52671d09ffa3d50c9a689ddfd0f1b2f221e7737d87e0b67d |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2013 Radim Rehurek <me@radimrehurek.com>
# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
"""
Deep learning via word2vec's "skip-gram and CBOW models", using either
hierarchical softmax or negative sampling [1]_ [2]_.
The train... | d10genes/gensim | gensim/models/word2vec.py | Python | gpl-3.0 | 74,321 | [
"VisIt"
] | bec881593af463b831e77280e67c9c36cc9e30b6551f9a8e9c883ec7141948c3 |
import numpy as np
import pytest
import LabPy
from NonlinearTMM import Material, SecondOrderNLTMM
@pytest.fixture(params = ["p", "s"])
def polP1(request):
return request.param
@pytest.fixture(params = ["p", "s"])
def polP2(request):
return request.param
@pytest.fixture(params = ["p", "s"])
... | ardiloot/NonlinearTMM | Tests/test_SecondOrderNLTMM.py | Python | mit | 3,819 | [
"CRYSTAL"
] | 9d46e2adbaa641976c080dc088eede1210f95853a40775715104acd64c2ce3fb |
from sg import sg
from pylab import plot, show, connect
from numpy import array,transpose,sin,double
import util
util.set_title('SVR Regression')
sg('new_regression', 'LIBSVR')
features=array([range(0,100)],dtype=double)
features.resize(1,100)
labels=sin(features)[0]
sg('set_features', "TRAIN", features)
sg('set_lab... | ratschlab/ASP | examples/undocumented/python_static/graphical/svr_regression.py | Python | gpl-2.0 | 671 | [
"Gaussian"
] | b9c64e8747196a20dde899f72201d970dd29ea93f3d01d49f4d545e7bb21905d |
try: paraview.simple
except: from paraview.simple import *
import numpy as np
from mpi4py import MPI
import os
import csv
from scipy import interpolate
import gc
import sys
gc.enable()
comm = MPI.COMM_WORLD
label = 'r_1k_B_1F1'
basename = 'ring'
## READ archive (too many points... somehow)
# args: name, dayi, dayf... | jungla/ICOM-fluidity-toolbox | 2D/U/extract_Velocity_CG_ring_U.py | Python | gpl-2.0 | 3,109 | [
"ParaView"
] | 49c5b3d0a13b9ab9a6ea36f6a9e329715c514627d2fd5ca68db1024e644a9e10 |
"""This module contains an interface for using the GPy library in ELFI."""
# TODO: make own general GPRegression and kernel classes
import copy
import logging
import GPy
import numpy as np
logger = logging.getLogger(__name__)
logging.getLogger("GP").setLevel(logging.WARNING) # GPy library logger
class GPyRegress... | HIIT/elfi | elfi/methods/bo/gpy_regression.py | Python | bsd-3-clause | 12,604 | [
"Gaussian"
] | 38faaa43c936f0ca4d0cd85071638d3652aa56cd3e597b7d8325035165574e8f |
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