text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
"""
Distributions
-------------
A widget for plotting attribute distributions.
"""
from math import sqrt
import sys
import collections
from xml.sax.saxutils import escape
from PyQt4 import QtGui, QtCore
from PyQt4.QtCore import Qt
import numpy
import pyqtgraph as pg
import Orange.data
from Orange.statistics import ... | PythonCharmers/orange3 | Orange/widgets/visualize/owdistributions.py | Python | gpl-3.0 | 24,573 | [
"Gaussian"
] | f4e8d7f7d0d49d57d16529e7279204a8147f0ca0a93622883de17374a657361b |
# creates: s1.png s2.png s3.png s4.png general_surface.pdf
from ase.lattice.surface import surface
s1 = surface('Au', (2, 1, 1), 9)
s1.center(vacuum=10, axis=2)
from ase.lattice import bulk
Mobulk = bulk('Mo', 'bcc', a=3.16, cubic=True)
s2 = surface(Mobulk, (3, 2, 1), 9)
s2.center(vacuum=10, axis=2)
a = 4.0
from ase ... | grhawk/ASE | tools/doc/ase/general_surface.py | Python | gpl-2.0 | 1,214 | [
"ASE"
] | d0dc08a2facdbb23ed3d41949ab262f02e74406c9b5c1be78cab31748c558e46 |
# This component calculates heating and cooling degree hours
#
# Ladybug: A Plugin for Environmental Analysis (GPL) started by Mostapha Sadeghipour Roudsari
#
# This file is part of Ladybug.
#
# Copyright (c) 2013-2015, Mostapha Sadeghipour Roudsari <Sadeghipour@gmail.com>
# Ladybug is free software; you can ... | samuto/ladybug | src/Ladybug_CDH_HDH.py | Python | gpl-3.0 | 11,925 | [
"EPW"
] | b56ae1595f153e95e826f7fa81748da51a99a6ce25ee5bc9db687988ab3d82de |
import os
import scipy.stats as ss
import sys
from add_exp import add_exp
import numpy as np
from random import shuffle
if len(sys.argv) != 6:
print('python aseQtl.py [ase file] [date] [snps directory] [n] [ttest/utest]')
sys.exit()
date = sys.argv[2]
cutoff = 1.0
#open ase file and read in
aseDict = add_exp(sys.ar... | emjosephs/eQTL | aseQtl.py | Python | mit | 3,048 | [
"ASE"
] | 03182f6ff7a7ed142e3309e682127a29bb5cd844b2edeeef2c4f3cf9db715d9d |
#!/usr/bin/env python
from __future__ import with_statement, print_function
from plumbum import colors
with colors.fg.red:
print('This is in red')
print('This is completly restored, even if an exception is thrown!')
print('The library will restore color on exiting automatially.')
print(colors.bold["This is bold... | astraw38/plumbum | examples/color.py | Python | mit | 756 | [
"exciting"
] | 3608a1b903f2abf947ee041dad9dea15ec0bed570c3ff39ff66ef3ef297704c8 |
# rgToolFactory.py
# see https://bitbucket.org/fubar/galaxytoolfactory/wiki/Home
#
# copyright ross lazarus (ross stop lazarus at gmail stop com) May 2012
#
# all rights reserved
# Licensed under the LGPL
# suggestions for improvement and bug fixes welcome at https://bitbucket.org/fubar/galaxytoolfactory/wiki/Home
#
... | mr-c/tools-iuc | tools/differential_count_models/rgToolFactory.py | Python | mit | 28,273 | [
"Galaxy"
] | d75a73c1688e1f9a4670cfce55735bdfac7753db06d634d04fdc77829083be83 |
import numpy as np
def compute_ranks(x):
"""
Returns ranks in [0, len(x))
Note: This is different from scipy.stats.rankdata, which returns ranks in [1, len(x)].
(https://github.com/openai/evolution-strategies-starter/blob/master/es_distributed/es.py)
"""
assert x.ndim == 1
ranks = np.empty(len(x), dtype=... | google/brain-tokyo-workshop | learntopredict/cartpole/es.py | Python | apache-2.0 | 18,914 | [
"Gaussian"
] | 4f55bbb5d98d0623687ff25de5685faafdce020cfbd21aac8c0fc4242f200559 |
#!/usr/bin/env python
## Copyright (C) 2005-2006 Graham I Cummins
## This program is free software; you can redistribute it and/or modify it under
## the terms of the GNU General Public License as published by the Free Software
## Foundation; either version 2 of the License, or (at your option) any later version.
##... | gic888/MIEN | parsers/numerical.py | Python | gpl-2.0 | 7,762 | [
"NEURON"
] | e0ed7cae78de74165a0032c24c2c885dde7189b163180d2bde208d8f2320c299 |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2014-2015 Bitergia
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option) any later version.
#
# This ... | pombredanne/Octopus | octopus/backends/docker.py | Python | gpl-3.0 | 4,587 | [
"Octopus"
] | 1f7f7784efaac31381e8aae7a831ad03a4e11bd4e6b6bbe10d6808be2a3721ef |
# python3
# pylint: disable=g-bad-file-header
# Copyright 2021 DeepMind Technologies Limited. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org... | deepmind/enn | enn/losses/vae_losses.py | Python | apache-2.0 | 4,414 | [
"Gaussian"
] | 15e779de4297179623ce27d85ac70b794207b49150e903fce932f8888336df3c |
from WebAppDIRAC.Lib.WebHandler import WebHandler, WebSocketHandler, WErr, WOK, asyncGen
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC import gConfig, S_OK, S_ERROR, gLogger
from DIRAC.Core.Utilities import Time, List, DictCache
from DIRAC.Core.Utilities.CFG import CFG
from DIRAC.ConfigurationSystem.priv... | atsareg/WebAppDIRAC | WebApp/handler/ConfigurationManagerHandler.py | Python | gpl-3.0 | 25,623 | [
"DIRAC"
] | 5e53ed73ef43360a98648d02451a18886f3dd87ede877252f039c0065d07ac4c |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
import numpy as np
from pymatgen.core import Structure
from pymatgen.core.sites import PeriodicSite
from pymatgen.analysis.defects.core import Vacancy, Interstitial, Substitution, \
... | montoyjh/pymatgen | pymatgen/analysis/defects/tests/test_core.py | Python | mit | 15,145 | [
"pymatgen"
] | 0c79239420dc8c9a7c4e6701069ae7edf162826eac3e329b3c0a2c9e667ad60f |
# -*- coding: utf-8 -*-
"""
functions.py - Miscellaneous functions with no other home
Copyright 2010 Luke Campagnola
Distributed under MIT/X11 license. See license.txt for more infomation.
"""
from __future__ import division
import warnings
import numpy as np
import decimal, re
import ctypes
import sys, struct
from ... | neurotechuoft/MindType | Code/V1/src/deprecated/pyqtgraph/functions.py | Python | agpl-3.0 | 91,598 | [
"Gaussian"
] | e263a372cfc7ee1533eceafa4e93fc9bc1f9295f97ac20b94ce89028b10a1501 |
import itertools, operator, math
import warnings
from .data import *
import shapely, shapely.ops, shapely.geometry
from shapely.geometry import asShape as geojson2shapely
from shapely.prepared import prep as supershapely
import pycrs
from ._helpers import geodetic_buffer
try:
zip = itertools.izip
except:
p... | karimbahgat/PythonGis | pythongis/vector/manager.py | Python | mit | 30,070 | [
"Bowtie"
] | b32e2807531411ea1b12a15cb2698bbdfc05fba543b7acbdb6a50c2b0478424b |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import math
import numpy as np
from monty.dev import deprecated
from pymatgen.core.periodic_table import Element
"""
Utilities for generating nicer plots.
""... | matk86/pymatgen | pymatgen/util/plotting.py | Python | mit | 13,986 | [
"pymatgen"
] | 78f72f198a3f7872ce376626247eb79b4fac998b096664874605b0722c9bec82 |
from sklearn.naive_bayes import GaussianNB
import random
import numpy as np
import math
from pylab import scatter,figure, clf, plot, xlabel, ylabel, xlim, ylim, title, grid, axes, show,semilogx, semilogy
import matplotlib.pyplot as plt
from matplotlib.font_manager import FontProperties
# Generation of data to train t... | JonatanAntoni/CMSIS_5 | CMSIS/DSP/Examples/ARM/arm_bayes_example/train.py | Python | apache-2.0 | 2,149 | [
"Gaussian"
] | 124863267d1acb19518bde7f46a4f787d901a0db9adce8a0fcb8bb540c1d129c |
# Module to run tests on turbulent scattering
from __future__ import print_function, absolute_import, division, unicode_literals
# TEST_UNICODE_LITERALS
import numpy as np
import pytest
from astropy import units as u
from astropy import constants as const
from frb.turb_scattering import Turbulence
#def data_path(f... | FRBs/DM | frb/tests/test_frbtscatt.py | Python | bsd-3-clause | 1,562 | [
"Galaxy"
] | 9f93c55928c7410f3ed562b7ba9aaba6df196d3843da34bbf5bdec5d75ae7819 |
from grow.pods.preprocessors import base
from protorpc import messages
import os
class CompilationLevel(messages.Enum):
SIMPLE_OPTIMIZATIONS = 1
ADVANCED_OPTIMIZATIONS = 2
WHITESPACE_ONLY = 3
_levels = {
CompilationLevel.SIMPLE_OPTIMIZATIONS: 'SIMPLE_OPTIMIZATIONS',
CompilationLevel.ADVANCED_OPTIMIZATI... | codedcolors/pygrow | grow/pods/preprocessors/closure_compiler.py | Python | mit | 1,998 | [
"GULP"
] | 9d3359f18483e3f8b84839557a67672343b80c0e60dedea8a4698c10752abe49 |
########################################################################
# File : DownloadInputData.py
# Author : Stuart Paterson
########################################################################
""" The Download Input Data module wraps around the Replica Management
components to provide access to datas... | ic-hep/DIRAC | src/DIRAC/WorkloadManagementSystem/Client/DownloadInputData.py | Python | gpl-3.0 | 16,803 | [
"DIRAC"
] | e9f33cc096dbf1f43f5af50c342bba87516f3a51be78d5052de6fcb45deae33e |
# -*- coding: utf-8 -*-
# Copyright (C) 2019 - 2020 by Pedro Mendes, Rector and Visitors of the
# University of Virginia, University of Heidelberg, and University
# of Connecticut School of Medicine.
# All rights reserved.
# Copyright (C) 2017 - 2018 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc.,... | copasi/COPASI | copasi/bindings/python/unittests/Test_CEvent.py | Python | artistic-2.0 | 2,991 | [
"COPASI"
] | 2ece2ee9e9462b691285848f8dbcf66a07b195b4c44ffbd215abad0e76668159 |
"""
Acceptance tests for Studio's Settings Details pages
"""
from datetime import datetime, timedelta
from flaky import flaky
from nose.plugins.attrib import attr
from unittest import skip
from common.test.acceptance.fixtures.config import ConfigModelFixture
from common.test.acceptance.fixtures.course import CourseFix... | synergeticsedx/deployment-wipro | common/test/acceptance/tests/studio/test_studio_settings_details.py | Python | agpl-3.0 | 9,999 | [
"VisIt"
] | ba9c85bcb6019b63a901fba13bc5fa3d999640f79099dd79908528907c2f94e8 |
# sql/util.py
# Copyright (C) 2005-2016 the SQLAlchemy authors and contributors
# <see AUTHORS file>
#
# This module is part of SQLAlchemy and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""High level utilities which build upon other modules here.
"""
from .. import exc, u... | yelongyu/chihu | venv/lib/python2.7/site-packages/sqlalchemy/sql/util.py | Python | gpl-3.0 | 20,629 | [
"VisIt"
] | 1a14e4b729cd50af4b44e47d61848ed22772ea6bbaae20d4926fa0b7c6e47d82 |
#pylint: disable=invalid-name
#
# TUBE CALIBRATION DEMONSTRATION PROGRAM - Execute this
#
# Here we run the calibration of WISH panel03
# We base the ideal tube on one tube of this door.
#
from __future__ import absolute_import, division, print_function
import tube
reload(tube) # noqa
from tube_spec import TubeSpec
i... | dymkowsk/mantid | scripts/Calibration/Examples/TubeCalibDemoWish1.py | Python | gpl-3.0 | 1,985 | [
"Gaussian"
] | e8c4e071263ecf627040ed3aa13b315c706044bc8c6d93888ec2e6ab9228d463 |
"""
An autoindex & strategy rapd_plugin
"""
__license__ = """
This file is part of RAPD
Copyright (C) 2009-2018, Cornell University
All rights reserved.
RAPD is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundatio... | RAPD/RAPD | src/plugins/index/plugin.py | Python | agpl-3.0 | 123,799 | [
"CRYSTAL"
] | 43153dd6e45747abee0722d519af32e3a98902ee4ce0a86ac45fdee3aa92557b |
import numpy as np
import matplotlib.pyplot as plt
import os
# enter values from simulation here
diffusivity = 2.0
sink_strength = 0.05
mean = 1.2 # mean of EventInserter distribution
Lx = 2.0 # length of problem in x
Ly = 2.2 # length of problem in y
scale = 3.0 # scale of Gaussian source term
# postprocessor... | jessecarterMOOSE/PRARIEDOG | examples/ex04_2d_sigma_ratio_adaptivity/plot_concentration.py | Python | lgpl-2.1 | 812 | [
"Gaussian"
] | 14dfb7b17e44a241a642bf8d377d0204fa0c57ca14c0e609bcb5c63b107224a7 |
"""Payload management for sending Ansible files and test content to other systems (VMs, containers)."""
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import atexit
import os
import stat
import tarfile
import tempfile
import time
from . import types as t
from .config import (... | thnee/ansible | test/lib/ansible_test/_internal/payload.py | Python | gpl-3.0 | 5,775 | [
"Galaxy"
] | 61a0b3f2a517d9db8ad6a13f02fd082b2be7fd5f36ea636c85c2dc6b439ed7d9 |
#import printStatWithName
from AZutilities import dataUtilities
from AZutilities import paramOptUtilities
from trainingMethods import AZorngRF
from trainingMethods import AZorngCvSVM
import Orange
import orange
import math
import copy
import string
"""
Module for calculation of non conformity scores and the correspond... | JonnaStalring/AZOrange | azorange/AZutilities/TCPMondrian.py | Python | lgpl-3.0 | 33,237 | [
"RDKit"
] | 2d167af355f53eec75bd197b527df646ad18b52bb0648742677f7bdc07357e66 |
import logging
import os
from galaxy.model.item_attrs import Dictifiable
from galaxy.util.bunch import Bunch
from galaxy.util import asbool
from tool_shed.util import common_util
from urlparse import urljoin
log = logging.getLogger( __name__ )
class ToolShedRepository( object ):
dict_collection_visible_keys = ( ... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/model/tool_shed_install/__init__.py | Python | gpl-3.0 | 32,006 | [
"Galaxy"
] | 529fd8c1737936ea9ef67ede2a1664caa3078d6ec967d989de47929286f9160e |
# -*- coding: utf-8 -*-
import numpy as np
import scipy.special
from bokeh.plotting import *
mu, sigma = 0, 0.5 # NOTE: you can tinker with these values if you like
# sample the distribution
measured = np.random.normal(mu, sigma, 1000)
hist, edges = np.histogram(measured, density=True, bins=50)
# compute idea... | jakevdp/bokeh | sphinx/source/tutorial/solutions/histogram.py | Python | bsd-3-clause | 4,424 | [
"TINKER"
] | 1597f2998c0c6b447a3a132fcc3a2b8b5f03066a0629e4c073c7a9007a207daa |
from __future__ import division, absolute_import, print_function
import numpy as np
from numpy.testing import (
TestCase, run_module_suite, assert_, assert_raises, assert_equal,
assert_warns)
from numpy import random
from numpy.compat import asbytes
import sys
class TestSeed(TestCase):
def test_sc... | naritta/numpy | numpy/random/tests/test_random.py | Python | bsd-3-clause | 31,521 | [
"Gaussian"
] | e3f84dd06a51ace4c19cae2aaad4daba63351e9bcd99d6e4d51b098ad673e1a1 |
import json
import logging
import numpy as np
from sklearn.neighbors import NearestNeighbors
from sklearn.neighbors.kde import KernelDensity
log = logging.getLogger(__name__)
def analyze(data):
# Convert this to python data for us to be able to run ML algorithms
json_to_python = json.loads(data)
per_si... | dscrobonia/sawyer | analyzers/response_size_knn.py | Python | mit | 2,216 | [
"Gaussian"
] | 3b6d38f8a59aa1be5dfa7ddead508f835bd8085de9937b97247e5df29b2fc613 |
# copyright 2003-2013 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This file is part of astroid.
#
# astroid is free software: you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published by the
#... | JetChars/vim | vim/bundle/python-mode/pymode/libs/astroid/inspector.py | Python | apache-2.0 | 9,260 | [
"VisIt"
] | 8329c2fe8693ba8e5cfb4601b940893eb0519a10fb3c01d6ab1bf19792c0aa89 |
#!/usr/bin/env python
'''
Project: Geothon (https://github.com/MBoustani/Geothon)
File: Data Management Tools /netcdf_info.py
Description: This code gives geotiff information.
Author: Maziyar Boustani (github.com/MBoustani)
'''
from netCDF4 import Dataset
NETCDF_FILE = "../static_files/netcd... | MBoustani/Geothon | Data Management Tools/netcdf_info.py | Python | apache-2.0 | 1,544 | [
"NetCDF"
] | 3e1f9630fc0e0863a3078e05e3ab74d9adf17e4a896fcc8288d915c8f5fc7c1f |
"""The suite of window functions."""
import numpy as np
from scipy import special, linalg
from scipy.fftpack import fft
def boxcar(M, sym=True):
"""The M-point boxcar window.
"""
return np.ones(M, float)
def triang(M, sym=True):
"""The M-point triangular window.
"""
if M < 1:
retur... | scipy/scipy-svn | scipy/signal/windows.py | Python | bsd-3-clause | 12,764 | [
"Gaussian"
] | a5eea5a07c5f035fda6c82c7103449c37d9000e3880ebbcb16a85a97c5d6b144 |
# Copyright 2010-2017, The University of Melbourne
# Copyright 2010-2017, Brian May
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | brianmay/karaage | karaage/plugins/kgsoftware/templatetags/software.py | Python | gpl-3.0 | 1,200 | [
"Brian"
] | 734a9085274efffe1c99b9ba274ef5408887db56b766a4856b41f4f7f670cc20 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow, Renderer and both Actors
#
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
iren = vtk.vtkRenderWindowInteractor()
iren.SetR... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Filters/Modeling/Testing/Python/TestFillHolesFilter.py | Python | gpl-3.0 | 1,835 | [
"VTK"
] | a3709cc2809846d9de9620a75d85bb9f80b622935cdd4bfe04d6109a7ce615ac |
"""
Holds user settings and various helper objects.
"""
# Copyright (C) 2011, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _
import os
from logging import info, warn
import ConfigParser
from zeroinstall import zerostore
from zeroinstall.injector.model import... | timdiels/zeroinstall | zeroinstall/injector/config.py | Python | lgpl-2.1 | 4,196 | [
"VisIt"
] | 9a348c46f44a02358fd52e48a93981d37c4d4f3a6a9c4ef2c582a176d7cd39d7 |
#Just a copy of the version in python 2.5 to be used if it's not available in jython 2.1
"""Simple XML-RPC Server.
This module can be used to create simple XML-RPC servers
by creating a server and either installing functions, a
class instance, or by extending the SimpleXMLRPCServer
class.
It can also be used to hand... | siosio/intellij-community | python/helpers/pydev/_pydev_imps/_pydev_SimpleXMLRPCServer.py | Python | apache-2.0 | 21,576 | [
"Brian"
] | 358aa907882b0dbeacdf818ab37da757c9e7a7f2b88cef562bb64c3b64651a55 |
# -*- coding: utf-8 -*-
"""Implementation of execution-related magic functions."""
# Copyright (c) IPython Development Team.
# Distributed under the terms of the Modified BSD License.
import ast
import bdb
import builtins as builtin_mod
import gc
import itertools
import os
import shlex
import sys
import time
import ... | lmregus/Portfolio | python/design_patterns/env/lib/python3.7/site-packages/IPython/core/magics/execution.py | Python | mit | 56,470 | [
"VisIt"
] | 79b6eb6e49ab0f50054c61008fd2675c7f50e9bf13bb1b994b6d745c3d3697d6 |
#!/usr/bin/python
"""GUIMiner - graphical frontend to Bitcoin miners.
Currently supports:
- m0mchil's "poclbm"
- puddinpop's "rpcminer"
- ufasoft's "bitcoin-miner"
Copyright 2011-2012 Chris MacLeod
This program is released under the GNU GPL. See LICENSE.txt for details.
"""
import sys, os, subprocess, errno, re, thr... | dpk9/poclbm | guiminer.py | Python | gpl-3.0 | 101,317 | [
"VisIt"
] | e5630eae9b23ce3f96296a0c7392d76f625f218a8cf87282c3cfcd8d29ff0476 |
import mock
from collections import defaultdict
from searx.engines import pdbe
from searx.testing import SearxTestCase
class TestPdbeEngine(SearxTestCase):
def test_request(self):
query = 'test_query'
dicto = defaultdict(dict)
params = pdbe.request(query, dicto)
self.assertTrue('ur... | misnyo/searx | tests/unit/engines/test_pdbe.py | Python | agpl-3.0 | 3,595 | [
"CRYSTAL"
] | c242764c30ea904c04ae4786c2826a202851ca56499e6326b050728735bbf17d |
# !/usr/bin/python
# -*- coding: latin-1 -*-
# WAVELET LIBRARY - Based on Torrence and Combo (1998)
# author: Mabel Calim Costa
# GMAO - INPE
# 23/01/2013
import os
import sys
import math
import scipy
import scipy.special
import numpy as np
import matplotlib
import matplotlib.pyplot as plt
import matplotlib as mpl
impo... | mabelcalim/waipy | lib/waipy/cwt/wavetest.py | Python | bsd-3-clause | 23,438 | [
"NetCDF"
] | 418e118b1b89ecd367f56bf993062307e9f013ecf0d276d4236aa674b34a945a |
########################################################################
# $HeadURL$
# File : OARComputingElement.py
# Author : M. Sapunov
########################################################################
""" OAR CE interface, via SSH
"""
from DIRAC.Resources.Computing.SSHComputingElement import SSHComputingEl... | calancha/DIRAC | Resources/Computing/SSHOARComputingElement.py | Python | gpl-3.0 | 812 | [
"DIRAC"
] | 82d5b6ce8bcab1638008e53878ed092c880de54c2c13b9269ed95feb9eac813b |
""" Module for email related functionality. """
from flask_mail import Message
import api
mail = None
from api.common import check, validate, safe_fail
from api.common import WebException, InternalException
from voluptuous import Required, Length, Schema
from datetime import datetime
password_reset_request_schema ... | cganas/picoCTF-web | api/email.py | Python | mit | 6,072 | [
"VisIt"
] | 0c78a470105b0a0523a647e85e00890bc626febb58287d01caac33dac51fd9a3 |
"""
Tests for discussion pages
"""
import datetime
from unittest import skip
from uuid import uuid4
from flaky import flaky
from nose.plugins.attrib import attr
from pytz import UTC
from .helpers import BaseDiscussionTestCase
from ..helpers import UniqueCourseTest
from ...pages.lms.auto_auth import AutoAuthPage
from... | MakeHer/edx-platform | common/test/acceptance/tests/discussion/test_discussion.py | Python | agpl-3.0 | 46,864 | [
"VisIt"
] | 3341fe85576d911b443d044802fa0dd9a194f92bddacb54046437bb041f7b72e |
# -*- coding: utf-8 -*-
"""Copyright 2015 Roger R Labbe Jr.
FilterPy library.
http://github.com/rlabbe/filterpy
Documentation at:
https://filterpy.readthedocs.org
Supporting book at:
https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python
This is licensed under an MIT license. See the readme.MD file
for mo... | Censio/filterpy | filterpy/stats/stats.py | Python | mit | 9,179 | [
"Gaussian"
] | 47cecb0fe6c737970d9ddac8bcbc7152f8b7c9aa582428cd838dd3511d5736b4 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi4/psi4 | psi4/driver/util/__init__.py | Python | lgpl-3.0 | 913 | [
"Psi4"
] | 23b6c7a708ef3c8ec64541d40db6f89f347bcfcead682c5ea90928ba2e13e0dc |
from array import array
from math import sqrt
import numpy as np
from pi_rtvp.util import fullname
from pi_rtvp.png import PNGImage
import pi_rtvp.matrix as matrix
class ImageKernel(object):
def __init__(self, name, size, values):
self.name = name
self.size = size
if values.size != size*siz... | circuitfox/csc2300-pi-project | pi_rtvp/kernel.py | Python | mit | 4,847 | [
"Gaussian"
] | 77cde190f431e171cefd14e991c05a2d38e22ae5aa747917ea326f0cb0fabfef |
"""
Acceptance tests for Studio related to the Pages.
"""
from common.test.acceptance.tests.studio.base_studio_test import StudioCourseTest
from common.test.acceptance.pages.studio.edit_tabs import PagesPage
class PagesTest(StudioCourseTest):
"""
Test that Pages functionality is working properly on studio sid... | jolyonb/edx-platform | common/test/acceptance/tests/studio/test_studio_tabs.py | Python | agpl-3.0 | 7,511 | [
"VisIt"
] | 70e1e4a0c247501e62d806110e73dbc53607dff0ae59562bddd2ce17ff6dd75f |
# coding: utf-8
#
# Copyright 2014 The Oppia Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | michaelWagner/oppia | core/domain/email_manager.py | Python | apache-2.0 | 36,353 | [
"VisIt"
] | f40580292a2701da99e8ed4df0396c992fa377ef04729b924bec1e708a50c531 |
import numpy as np
__author__ = 'Allison MacLeay'
class DualPerceptron(object):
def __init__(self, T=1, kname='dot'):
self.T = T
self.alphas = None
self.w = None
self.y = None
self.kernel = Kernel(kname)
def _add_bias(self, X):
bias = np.ones(X.shape[0])
... | alliemacleay/MachineLearning_CS6140 | Homeworks/HW7/DualPerceptron.py | Python | mit | 2,837 | [
"Gaussian"
] | 6996eb70d1949b6cf706f1fcc59f9d7da4bdffa097f506ddfa733d68f93efc38 |
# coding: utf-8
from __future__ import unicode_literals, division
from custodian.custodian import Validator
from pymatgen.io.vaspio.vasp_output import Vasprun
class VasprunXMLValidator(Validator):
"""
Checks that a valid vasprun.xml was generated
"""
def __init__(self):
pass
def check(... | alberthxf/custodian | custodian/vasp/validators.py | Python | mit | 436 | [
"pymatgen"
] | b928fe9c04ce92743457f480851f8832cdf5694262ffd44755eeb237c6f994a0 |
#!/usr/bin/env python
import sys
import numpy as np
try:
# Matplotlib is not a dependency
import matplotlib as mpl
mpl.use('Agg') # force the antigrain backend
except (ImportError, RuntimeError):
mpl = None
from ase.units import Bohr
from gpaw.mpi import world, distribute_cpus
from gpaw.utilities.to... | ajylee/gpaw-rtxs | gpaw/test/parallel/ut_invops.py | Python | gpl-3.0 | 19,654 | [
"ASE",
"GPAW",
"Gaussian"
] | ba1d163717ab20421ec40b5a216edd060bfdb675414a5330c5b293456e3cec4a |
import os
import numpy as np
from ase.units import Bohr, Hartree
from ase.io.elk import read_elk
from ase.calculators.calculator import FileIOCalculator, Parameters, kpts2mp, \
ReadError
elk_parameters = {
'swidth': Hartree,
}
class ELK(FileIOCalculator):
command = 'elk > elk.out'
implemented_pr... | grhawk/ASE | tools/ase/calculators/elk.py | Python | gpl-2.0 | 14,256 | [
"ASE",
"DIRAC",
"Elk",
"Gaussian"
] | 0249d75278a24c9b574c2c3cd72796b1e60c9451e50876e5819def8bf2e21da0 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-talent | tests/unit/gapic/talent_v4beta1/test_tenant_service.py | Python | apache-2.0 | 95,103 | [
"Octopus"
] | febf42e79ca8e2cdb32c03e32ecb45b3df4b93450eb5630bb9c2ee022b9cf6ea |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# create planes
# Create the RenderWindow, Renderer and both Actors
#
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.SetMultiSamples(0)
renWin.AddRenderer(ren1)
iren =... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Filters/Core/Testing/Python/probeComb.py | Python | gpl-3.0 | 3,597 | [
"VTK"
] | b5e3af07ed0a56f439b2bd39cbcaf0c71527b1d15e0919b3853f34b7b13d74df |
#### import the simple module from the paraview
from paraview.simple import *
renderView1 = GetActiveViewOrCreate('RenderView')
body = GetActiveSource()
generateSurfaceNormals1 = GenerateSurfaceNormals(Input=body)
generateSurfaceNormals1.ComputeCellNormals = 1
cellCenters1 = CellCenters(Input=generateSurfaceNormals1)... | WEC-Sim/WEC-Sim | source/functions/paraview/pressureGlyphs.py | Python | apache-2.0 | 5,313 | [
"ParaView"
] | a2b1b31160d854031c5cc67a4e3f53f306bddf5e9de4a3a3e50a6d3e85ffd246 |
# Copyright 2008-2010 by Peter Cock. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# This module is for reading and writing IntelliGenetics format files as
# SeqRecord object... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/SeqIO/IgIO.py | Python | gpl-2.0 | 3,718 | [
"Biopython"
] | d875c58be66ec0c0c4b911698292a63db8bd964ab7cf484403a6e9d50cac5340 |
# -*- coding: utf-8 -*-
# HORTON: Helpful Open-source Research TOol for N-fermion systems.
# Copyright (C) 2011-2016 The HORTON Development Team
#
# This file is part of HORTON.
#
# HORTON is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by th... | crisely09/horton | horton/io/molden.py | Python | gpl-3.0 | 22,362 | [
"Gaussian",
"ORCA",
"Psi4"
] | b9aa84442841bb47e660ba5d848d77db72b3f9f148b07bc8943fc92b71d5edba |
from __future__ import absolute_import
from django.db import models
from django.conf import settings
from django.contrib.auth.models import AbstractBaseUser, UserManager, \
PermissionsMixin
from django.dispatch import receiver
from zerver.lib.cache import cache_with_key, flush_user_profile, flush_realm, \
user... | atomic-labs/zulip | zerver/models.py | Python | apache-2.0 | 50,049 | [
"VisIt"
] | ff71c7763dbeb2aa2b018874b5f37094a919cd8e84af2cbccdeb6ffbf89bd1a3 |
from unittest import skipUnless
from bok_choy.web_app_test import WebAppTest
from acceptance_tests import ENABLE_OAUTH_TESTS
from acceptance_tests.mixins import LoginMixin
from acceptance_tests.pages import LoginPage
@skipUnless(ENABLE_OAUTH_TESTS, 'OAuth tests are not enabled.')
class OAuth2FlowTests(LoginMixin, W... | Stanford-Online/edx-analytics-dashboard | acceptance_tests/test_auth.py | Python | agpl-3.0 | 1,143 | [
"VisIt"
] | 660732681938f7e35f0c822465a741a94e7c8f802c224224b8c88c464e8e2dde |
import numpy as np
import loudness as ln
class BinauralInhibitionMG2007:
def __init__(self, cams):
nFilters = cams.size
camStep = cams[1] - cams[0]
g = np.arange(nFilters) * camStep
gaussian = np.exp(-(0.08 * g) ** 2)
self.fullGaussian = np.hstack((gaussian[::-1], gaussi... | deeuu/loudness | python/tests/test_BinauralInhibitionMG2007.py | Python | gpl-3.0 | 2,409 | [
"Gaussian"
] | af2bb5ec7f64774e78cf8cd11fbf93ea41ffa1a538f65fbca888f55fe299a0ad |
''' Tests for netcdf '''
from __future__ import division, print_function, absolute_import
import os
from os.path import join as pjoin, dirname
import shutil
import tempfile
import warnings
from io import BytesIO
from glob import glob
from contextlib import contextmanager
import numpy as np
from numpy.testing import (... | jlcarmic/producthunt_simulator | venv/lib/python2.7/site-packages/scipy/io/tests/test_netcdf.py | Python | mit | 10,833 | [
"NetCDF"
] | b53f0623c3eeb08d10b6ada41c706f4560bf12e870728aa43a651c7e21fbb1ef |
# -*- coding: utf-8 -*-
"""Infrared intensities"""
import pickle
from math import sin, pi, sqrt, exp, log
from sys import stdout
import numpy as np
import ase.units as units
from ase.io.trajectory import PickleTrajectory
from ase.parallel import rank, barrier, parprint, paropen
from ase.vibrations import Vibration... | grhawk/ASE | tools/ase/infrared.py | Python | gpl-2.0 | 14,059 | [
"ASE",
"Gaussian",
"SIESTA",
"VASP"
] | 3b922987625c98bb8b71136ad60c7ee2db370728e1b41dbcdc9af2b4fe434fb7 |
#!/home/rbdavid/bin/python
# ----------------------------------------
# USAGE:
# ./rmsd.ref.py config_file
# ----------------------------------------
# PREAMBLE:
import sys
import importlib
import numpy as np
import MDAnalysis
config_file = sys.argv[1]
# ----------------------------------------
# FUNCTIONS:
nece... | rbdavid/RMSD_analyses | Basic_RMSD/rmsd.ref.py | Python | gpl-3.0 | 6,702 | [
"MDAnalysis"
] | e60c5c192017a5d60cb8bc0827a733f440c6accca9adb51cfa5f60deeaa6452b |
from sqlalchemy import and_
from sqlalchemy import bindparam
from sqlalchemy import case
from sqlalchemy import Column
from sqlalchemy import exc
from sqlalchemy import extract
from sqlalchemy import ForeignKey
from sqlalchemy import func
from sqlalchemy import Integer
from sqlalchemy import literal
from sqlalchemy imp... | graingert/sqlalchemy | test/sql/test_external_traversal.py | Python | mit | 73,475 | [
"ADF",
"VisIt"
] | 42c26e1f2aa503c0e7e4ed1bd7ed736f8e0c081b59c94868813ddff308d25167 |
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2012-2013 Esteban Tovagliari, Jupiter Jazz Limited
# Copyright (c) 2014-2017 Esteban Tovagliari, The appleseedhq Organization
#
# P... | aiivashchenko/appleseed | sandbox/samples/python/basic/basic.py | Python | mit | 11,762 | [
"VisIt"
] | 95b3c41848062ede58ee474e72c0fe223e707bbb081651b1d865075b586b9432 |
"""Collection of functions to visualize generated samples."""
# Imports
import numpy as np
import numpy.linalg as LA
import matplotlib.pyplot as plt
# Local imports
import data_transforms
import McNeuron
import batch_utils
def plot_example_neuron_from_parent(X_locations, X_parent):
"""
Show an example neur... | RoozbehFarhoodi/McNeuron | plot_utils.py | Python | mit | 2,731 | [
"NEURON"
] | d7512485fc8698c8e457027bb2f99899fe79e9843ef926f756b9cac4011c5ec6 |
#!/usr/bin/env python
"""pyhdf: Python interface to the NCSA HDF4 library.
The pyhdf package wraps the functionality of the NCSA HDF version
4 library inside a Python OOP framework. The SD (scientific dataset),
VS (Vdata) and V (Vgroup) APIs are currently implemented. SD datasets
are read/written through numpy arrays... | fhs/python-hdf4 | setup.py | Python | mit | 5,088 | [
"NetCDF"
] | bacae9218c82446e576571fe0d4559980c96e243466b227f63d78bf56a665917 |
import os
from rdkit import Chem
from rdkit_fixer import (PreparePDBMol,
ExtractPocketAndLigand,
AtomListToSubMol)
test_data_dir = os.path.join(os.path.dirname(os.path.abspath(__file__)),
'..', '..', 'test_data')
class BenchRdkitFixer(ob... | mkukielka/oddt | asv_bench/benchmarks/rdkit_fixer.py | Python | bsd-3-clause | 1,003 | [
"RDKit"
] | d8f05ce7c4aab7b831dbe1107d86f1cf1dbb0806f130650a4bc8418d0a3e07e0 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.BlakeDrager.fping/setup.py | Python | gpl-2.0 | 3,274 | [
"VisIt"
] | cdce005d1ad9bad24765165069a70979a40d80099d98f8a7375a2b31082e810a |
#!/usr/bin/env python
import argparse, sys
from argparse import RawTextHelpFormatter
import pysam
__author__ = "Author (email@site.com)"
__version__ = "$Revision: 0.0.1 $"
__date__ = "$Date: 2013-05-09 14:31 $"
# --------------------------------------
# define functions
def get_args():
parser = argparse.Argumen... | cc2qe/bamkit | bamcleanheader.py | Python | mit | 4,109 | [
"pysam"
] | 8d5f1fb37aee41a5edfe45a49fec9e8b493b7be1af269a1454a61d969fef6080 |
#!/usr/bin/env python
"""
Compliance Checker
"""
import csv
import itertools
import pprint
import re
import sys
import warnings
from collections import defaultdict
from functools import wraps
from io import StringIO
import validators
from lxml import etree
from netCDF4 import Dataset
from owslib.namespaces import N... | ocefpaf/compliance-checker | compliance_checker/base.py | Python | apache-2.0 | 19,571 | [
"NetCDF"
] | 01585a23e0b5f37a05ae7d5dd7c64459ea1595adfe5dfcf093d4dd1076303d7e |
# Orca
#
# Copyright 2005-2009 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | ruibarreira/linuxtrail | usr/lib/python3/dist-packages/orca/braille.py | Python | gpl-3.0 | 63,374 | [
"ORCA"
] | b439a453c7b8fd4c138e5f8e14c21059a808af109c4a7c468e21aff38e9b909b |
import numpy as np
def prep_single(data):
return map(lambda x: {'x':x[0], 'y':x[1]}, zip(*data))
def prep_multi(events, key='V_m'):
values = np.array(events[key]).reshape(-1,np.unique(events['senders']).size).tolist()
times = np.unique(events['times'])
data = map(lambda i: {'x': times[i], 'y':values[i... | babsey/nest-webapp | lib/helpers.py | Python | mit | 702 | [
"NEURON"
] | e8a27b21db4ed45722d3bb96e09bc91ca57bddcda236a61559bd25535df969a8 |
#!/usr/bin/env python
# standard library
import os
import json
import shutil
import distutils
import distutils.dir_util
import webbrowser
# external
from sympy.physics.mechanics import ReferenceFrame, Point
# local
from .camera import PerspectiveCamera
from .server import Server
from .light import PointLight
__all_... | nouiz/pydy | pydy/viz/scene.py | Python | bsd-3-clause | 15,511 | [
"VisIt"
] | 2321470a63e103ae13f1a334b255f7441c6a7c45e5cd42b2b9738eb47672ae24 |
# -*- coding: utf-8 -*-
import copy
import datetime
import json
import os
from email.utils import formataddr
from django.conf import settings
from django.core import mail
from django.urls import reverse
from unittest import mock
import pytest
from waffle.testutils import override_switch
from olympia import amo
fro... | bqbn/addons-server | src/olympia/activity/tests/test_utils.py | Python | bsd-3-clause | 27,810 | [
"VisIt"
] | c0d3dc144b379f5e0441afa8c5d4e6e2754dff0d3a91aeab0891b63cb32ff203 |
from __future__ import unicode_literals
import sys
import os
import warnings
import ruamel.yaml as yaml
__author__ = "Pymatgen Development Team"
__email__ ="pymatgen@googlegroups.com"
__maintainer__ = "Shyue Ping Ong"
__maintainer_email__ ="shyuep@gmail.com"
__version__ = "2017.12.30"
SETTINGS_FILE = os.path.join(o... | johnson1228/pymatgen | pymatgen/__init__.py | Python | mit | 2,749 | [
"CRYSTAL",
"pymatgen"
] | eee97701938a27c7915ecf484a79d787f816b3a80068e813131aba71769f22ca |
"""
Module to set up run time parameters for Clawpack.
The values set in the function setrun are then written out to data files
that will be read in by the Fortran code.
"""
import os
import numpy as np
#------------------------------
def setrun(claw_pkg='amrclaw'):
#------------------------------
""... | clawpack/adjoint | examples/acoustics_2d_radial_timepoint/adjoint/setrun.py | Python | bsd-2-clause | 11,213 | [
"NetCDF"
] | e5c5d654f5c9a967d19c5666bc36a62ccfb7a168f9b167dc2975accad6817392 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2005 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | Forage/Gramps | gramps/plugins/rel/rel_pl.py | Python | gpl-2.0 | 33,717 | [
"Brian"
] | 2a507cf129605d226433d4018dbd0580b01add407a4166fdfaa573f3c5d08207 |
# Sample Runs of analyzeStructure3D module.
import pymatgen as mg
from analyzeStructure3D import analyzePerovskite3D
from analyzeStructure3D import makePerovskite3D
# Make poscar structures.
poscar_01 = mg.Structure.from_file('POSCAR_01')
poscar_03 = mg.Structure.from_file('POSCAR_03')
# Run analyzePerovskite3D ... | ornl-abinitio/codesScripts | ramScripts/analyzePerovskiteRunSample.py | Python | lgpl-2.1 | 2,340 | [
"pymatgen"
] | efa8fe2e63af52b74a1fcedd98aeb0efe3984efc41141dbc62d1a14591d47f71 |
# Copyright (c) Charl P. Botha, TU Delft.
# All rights reserved.
# See COPYRIGHT for details.
# skeleton of an AUI-based viewer module
# copy and modify for your own purposes.
# set to False for 3D viewer, True for 2D image viewer
IMAGE_VIEWER = True
MATCH_MODE_PASSTHROUGH = 0
MATCH_MODE_LANDMARK_SS = 1
MATCH_MODE_... | nagyistoce/devide | modules/viewers/CoMedI.py | Python | bsd-3-clause | 16,717 | [
"VTK"
] | 719cac71e2e9fabd4b2428b71222ce38634049bcb665eab93a1720b088cc9da5 |
# coding: utf-8
"""
Copyright (C) 2019, Timothy A. Davis, Nikki Zabel, James M. Dawson
E-mail: DavisT -at- cardiff.ac.uk, zabelnj -at- cardiff.ac.uk, dawsonj5 -at- cardiff.ac.uk
Updated versions of the software are available through github:
https://github.com/TimothyADavis/KinMSpy
If you have found this software usefu... | TimothyADavis/KinMSpy | kinms/utils/KinMS_figures.py | Python | mit | 13,307 | [
"Gaussian"
] | c52dd6cfb72b2a343cfb3f01b8617e974ffdc64d9767268b3519ea1c5720b787 |
# -*- coding: utf-8 -*-
#------------------------------------------------------------
# pelisalacarta - XBMC Plugin
# Canal para oranline
# http://blog.tvalacarta.info/plugin-xbmc/pelisalacarta/
#------------------------------------------------------------
import urlparse,urllib2,urllib,re
import os, sys
from core imp... | CarlosCondor/pelisalacarta-xbmc-plus | pelisalacarta/channels/oranline.py | Python | gpl-3.0 | 19,523 | [
"ADF"
] | 394fadb000b87c4b1a3f38b71cdc698404aa4ac8f2f3a24b499feb878276ab6f |
from expression import *
import visitor
__all__ = ["Printer","LatexPrinter"]
class Printer(visitor.visitor_class()):
def __init__(self,S):
self.S = S
def format_name(self,name):
return name
def register_printer(self,expr,printer):
self.dispatcher.register_target(expr,printer)
... | TheLartians/Expresso | expresso/printer.py | Python | mit | 5,479 | [
"VisIt"
] | a311c413b18b80255b733bafcc78e7717df7782f6e52bc178f0b2bb14c23dec4 |
"""
Test some properties of the netCDF4 library.
"""
import time
from datetime import datetime
from unittest import TestCase
import netCDF4
import numpy
class NetCDF4Test(TestCase):
def test_num2date(self):
# From Precip
# -----------
self.assertEqual(datetime(1987, 1, 1, 0, 0),
... | CAB-LAB/cablab-core | test/test_netcdf4.py | Python | gpl-3.0 | 8,032 | [
"NetCDF"
] | 3f703a01b817b6b1f597b1da6f86946531f930e354a5273a38892ea3711f41d6 |
# This test calculates the force on the atoms in a hydrogen chain, comparing
# the results to finite-difference values.
#
# The reference result is obtained from an FD calculation, which can be rerun
# by setting the fd boolean below.
#
# The purpose is to test domain decomposition with large cells. The basis
# functi... | qsnake/gpaw | gpaw/test/lcao_largecellforce.py | Python | gpl-3.0 | 1,949 | [
"ASE",
"GPAW"
] | cd93545e86bb56dde780b6d35c2db65098003024e804e43b4f2590834c58c0aa |
#! /usr/bin/env python
# -*- coding: iso-8859-1 -*-
""" crypto.cipher.icedoll_test
Tests for icedoll encryption algorithm
Copyright © (c) 2002 by Paul A. Lambert
Read LICENSE.txt for license information.
"""
from crypto.cipher.icedoll import Icedoll
from crypto.cipher.base import noPadding
... | dknlght/dkodi | src/script.module.cryptopy/lib/crypto/cipher/icedoll_test.py | Python | gpl-2.0 | 4,014 | [
"Brian"
] | c0672499b4e18213e94dc92c39b3ca5f16cc7256f321511faf8c8cfdf6b574f9 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | python/peacock/tests/exodus_tab/test_ContourPlugin.py | Python | lgpl-2.1 | 8,634 | [
"MOOSE",
"VTK"
] | dad2c49a822716f47fcbaf9f2236d059452dba2d2b7cbb5446b31d4161e319f7 |
#!/usr/bin/env python
# coding: utf-8
"""
:module:`openquake.sub.slab.rupture`
"""
import os
import re
import sys
import h5py
import numpy as np
import rtree
import logging
import configparser
# from mayavi import mlab
from pyproj import Proj
# from openquake.sub.plotting.tools import plot_mesh
# from openquake.su... | GEMScienceTools/oq-subduction | openquake/sub/slab/rupture.py | Python | agpl-3.0 | 24,782 | [
"Gaussian",
"Mayavi"
] | 42da59dee8f58caf09cc66f8ba500cb9b835497ab63e3937093c0f269fa6049b |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publ... | thica/ORCA-Remote | src/ORCA/download/RepManagerEntry.py | Python | gpl-3.0 | 3,339 | [
"ORCA"
] | fe2a9da0ba68fb059e514e02de06b1db07599e1658cb49b77c3d3cf169a952cf |
""" Tools for storing data cube tiles
"""
import inspect
import os
from .geotiff import GeoTIFFStore
from .vrt import VRT
STORAGE_TYPES = {
'GeoTIFF': GeoTIFFStore,
# TODO: 'NetCDF': NetCDFStore
}
__all__ = [
'GeoTIFFStore',
'VRT'
]
def destination_path(config, tile, product, root_override=None):
... | ceholden/landsat_tiles | tilezilla/stores/__init__.py | Python | bsd-3-clause | 1,008 | [
"NetCDF"
] | 8b417ce03e77b9df70b4a350b014e946fe4fb55488473b282057c3716531f94c |
"""Iconos y pixmap usados en el programa"""
from PyQt4 import QtGui
f = open("./IntFiles/Iconos.bin","rb")
binIconos = f.read()
f.close()
def icono(name):
return eval( "%s()"%name )
def pixmap(name):
return eval( "pm%s()"%name )
def PM(desde, hasta):
pm = QtGui.QPixmap()
pm.loadFromData( binIcono... | lukasmonk/lucaschess | Code/QT/Iconos.py | Python | gpl-2.0 | 43,242 | [
"MOOSE"
] | d1015864ed7f306500e1b7a397069c3009ae0ab02af1e4eade4c65233e2097d2 |
"""
Views related to the Custom Courses feature.
"""
import csv
import datetime
import functools
import json
import logging
import pytz
from copy import deepcopy
from cStringIO import StringIO
from django.conf import settings
from django.core.urlresolvers import reverse
from django.http import (
HttpResponse,
... | ampax/edx-platform | lms/djangoapps/ccx/views.py | Python | agpl-3.0 | 20,762 | [
"VisIt"
] | 360c16e2b25770cf0d42b65ff95ff42fa52f14bec2f24b7d709f7ed9b83f0f38 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/gto/pp_int.py | Python | apache-2.0 | 2,653 | [
"PySCF"
] | 005d007ac209d1f0ff306584f3ba55effee0d2cea4e31c6875b20be73cfab2b0 |
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import zeroinstall
import os
from zeroinstall import _
from zeroinstall.support import tasks, unicode
from zeroinstall.injector.model import Interface, Feed, stable, testing, developer, stability_levels
from zeroinsta... | linuxmidhun/0install | zeroinstall/gui/properties.py | Python | lgpl-2.1 | 18,460 | [
"VisIt"
] | 33dfb771ae607349c2faed0c91f2e3b0141709b416b06c17abe2ddad354ab173 |
# -*- coding: utf-8 -*-
"""
pygments.lexers._vim_builtins
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
This file is autogenerated by scripts/get_vimkw.py
:copyright: Copyright 2006-2017 by the Pygments team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
# Split up in multiple functions so it's import... | wandb/client | wandb/vendor/pygments/lexers/_vim_builtins.py | Python | mit | 57,090 | [
"BLAST"
] | 988600970cdfebced447ca0f718eb2e3c1fe0634f23cd0f1d681e245ce70072c |
#!/usr/bin/env python
########################################################################
# $Header: $
########################################################################
__RCSID__ = "$Id$"
from DIRAC import exit as DIRACExit
from DIRAC.Core.Base import Script
Script.setUsageMessage( """
Remove th... | Sbalbp/DIRAC | DataManagementSystem/scripts/dirac-dms-remove-catalog-replicas.py | Python | gpl-3.0 | 1,490 | [
"DIRAC"
] | 6b5ca878bff42f87cc6e3cbcfc2aacd39ea37c74bc3345b097abf1f23df01c34 |
#!/usr/bin python
# -*- coding: utf-8 -*-
from __future__ import print_function
from utils import gauss_1d, gauss_2d_isotropic, gauss_2d_anisotropic
import numpy as np
import warnings
import math
try:
from scipy.special import erf
from scipy.optimize import leastsq
is_scipy = True
except ImportError:
w... | ipashchenko/uvmod | uvmod/stats.py | Python | mit | 19,146 | [
"Gaussian"
] | 77694ab91de3a01935a7a1ef1d9c3b29174a816f640370bd85f03acd4f0e98cc |
########################################################################
# $HeadURL$
# File: TransferDB.py
########################################################################
""" :mod: TransferDB
================
TransferDB is a front end to the TransferDB mysql database, built
on top of RequestDB.
... | avedaee/DIRAC | DataManagementSystem/DB/TransferDB.py | Python | gpl-3.0 | 71,822 | [
"DIRAC"
] | 718b082067896a79d8f2dbf4e0bcf97119fabedb138252a16fcff5126bdd0f60 |
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