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from __future__ import (absolute_import, division, print_function)
import unittest
from mantid import logger
# noinspection PyUnresolvedReferences
from mantid.simpleapi import mtd, Abins, Scale, CompareWorkspaces, Load, DeleteWorkspace
from AbinsModules import AbinsConstants, AbinsTestHelpers
import numpy as np
class... | ScreamingUdder/mantid | Framework/PythonInterface/test/python/plugins/algorithms/AbinsBasicTest.py | Python | gpl-3.0 | 9,837 | [
"CASTEP",
"CRYSTAL"
] | 6c2878593ab4d384cae8fb5a0d8fbd0464b229d7f597679a77c87456050697e6 |
import os
import sys
import numpy as np
import astropy.io.fits as afits
from scipy.interpolate import interp1d, UnivariateSpline
from astrodash.array_tools import normalise_spectrum, zero_non_overlap_part
from astrodash.read_from_catalog import catalogDict
try:
import pandas as pd
USE_PANDAS = True
except Imp... | daniel-muthukrishna/DASH | astrodash/preprocessing.py | Python | mit | 17,597 | [
"Galaxy"
] | fe6ae7f42219cce7b1dd2e48ed5593847265b6c60b02a0b70a32289ad74fb30f |
from __future__ import print_function
import os
import sys
import subprocess
import itertools
import csv
import time
GapChar = '-'
# Test that we can run code we'll need
DirectoryOfThisScript = os.path.dirname(os.path.realpath(__file__))
def FindAndCheckCode(PythonPath, CodeBasename, BaseNameIncludesDir=False,
IsPyCo... | BDI-pathogens/phyloscanner | tools/phyloscanner_funcs.py | Python | gpl-3.0 | 47,483 | [
"pysam"
] | 536851c77b8ba4df2e780d51723778beb8ae7c18b823ee6b52a327b2c1a46e62 |
#!/usr/bin/env python
"""
refguide_check.py [OPTIONS] [-- ARGS]
Check for a Scipy submodule whether the objects in its __all__ dict
correspond to the objects included in the reference guide.
Example of usage::
$ python refguide_check.py optimize
Note that this is a helper script to be able to check if things ar... | nmayorov/scipy | tools/refguide_check.py | Python | bsd-3-clause | 31,414 | [
"Gaussian"
] | eb860894c15fc9163cfed460eeae0bf31fbe4342f75fcd4887df966d121f5d30 |
from setuptools import setup, find_packages
import imp
version = imp.load_source('librosa.version', 'librosa/version.py')
setup(
name='librosa',
version=version.version,
description='Python module for audio and music processing',
author='Brian McFee',
author_email='brian.mcfee@nyu.edu',
url='... | ruohoruotsi/librosa | setup.py | Python | isc | 1,694 | [
"Brian"
] | 86adc23b0a9c7b7f3a71f3f3cba62eb0c080be35659da4b0c4441b2f6152f737 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# grid_ftps - secure ftp server wrapping ftp in tls/ssl and mapping user home
# Copyright (C) 2003-2015 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the ... | heromod/migrid | mig/server/grid_ftps.py | Python | gpl-2.0 | 14,640 | [
"Brian"
] | 94e7b6ed998061ee59dd0afa47c2d6c9fcf2f4227c3ed552e5e11712fba2f9a5 |
from django.db import models
from firearm.models import Firearm
from member.models import Member
RANGES = [
'Bicester',
'Chesterton'
]
SESSIONS = [
'Practice',
'Competition'
]
class Visit(models.Model):
member = models.ForeignKey(Member)
range = models.IntegerField(choices=enumerate(RANGES... | joedborg/fusilier | register/models.py | Python | agpl-3.0 | 622 | [
"VisIt"
] | 9f513c3ac1ac6f155fdb667f5462180297e853a34e1ef36fc68bb2aeb06b3cb1 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Extract sequences from a fasta file if the begining of their name is not in a 'remove' file.
Remove file contains one sequence name per line.
Usage:
%program <input_file> <remove_file> <output_file>"""
import sys
import re
try:
from Bio import SeqIO
except:
... | enormandeau/Scripts | fasta_remove_start.py | Python | gpl-3.0 | 1,123 | [
"Biopython"
] | d5c91cf44845237f6533e71b6a57d5cc437f5ff8312f17f637c6108c60093bcc |
#coding:utf8
'''
Created on 2013-8-2
@author: lan (www.9miao.com)
'''
import os
if os.name!='nt':
from twisted.internet import epollreactor
epollreactor.install()
def println(a):
print a
if __name__=="__main__":
from firefly.master.master import Master
master = Master()
master.config('con... | yangdw/repo.python | src/annotation/Firefly/firefly/test/test_server_master.py | Python | mit | 381 | [
"Firefly"
] | 0482808cd3dee65d1b5f306d2c79a9127dc895fa7a5ab726b2892cb3b576b2b4 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2007-2008 Douglas S. Blank
# Copyright (C) 2004-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Tim G L Lyons
# Copyright (C) 2013 Vassilii Khachaturov
#
# Th... | Fedik/gramps | gramps/plugins/export/exportcsv.py | Python | gpl-2.0 | 23,772 | [
"Brian"
] | 72c502313f0f043bf35c12cf483d1e67ff8c127769bad08264b96b259a4b65a8 |
from flask import Flask, render_template, session, request, redirect
import random
app = Flask(__name__)
app.secret_key = 'my_secret_key'
@app.route('/')
def index():
if not 'gold' in session:
session['gold'] = 0
if not 'activities' in session:
session['activities'] = []
return render_templ... | authman/Python201609 | Guerrero_Melissa/Assignments/Guerrero_Flask_Olympics/olympics6/server.py | Python | mit | 899 | [
"CASINO"
] | 199c5eba874d666d59a943b8b7447e27a6ef1957393d7575bf33a5309c9eaf56 |
import numpy as np
import tensorflow as tf
from tensorflow.contrib import rnn
def _print_success_message():
print('Tests Passed')
def test_create_lookup_tables(create_lookup_tables):
with tf.Graph().as_default():
test_text = '''
Moe_Szyslak Moe's Tavern Where the elite meet to drink
... | nwhidden/ND101-Deep-Learning | tv-script-generation/problem_unittests.py | Python | mit | 13,109 | [
"MOE"
] | 62baf6c1d53c36640c7d49f12b085e2a9f6d0734423437a86affa7fafb473936 |
#Module of various function for streamlining loading of data.
#Contains function get arrays and addresses for data files.
import glob
import numpy as np
import clean
import spec
############################################################
#Stuff for the large SVD distribution function acquired on
#11 - 28 - 2016
#
###... | Smattacus/data-analysis | python/modules/sroh.py | Python | gpl-2.0 | 22,772 | [
"Gaussian"
] | 25bbd1f10e7c7a3debb621ae753214f411f34ac19c98031833364e27d7b47f7e |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
Unit tests for StructureNL (SNL) format
"""
__author__ = "Anubhav Jain"
__credits__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Pro... | xhqu1981/pymatgen | pymatgen/matproj/tests/test_snl.py | Python | mit | 10,131 | [
"pymatgen"
] | 5b7f18134b57f5f249ee6b1fd2d573cf07daffc1657f268524a622d6bdf727b4 |
"""
Course Outline page in Studio.
"""
import datetime
from bok_choy.page_object import PageObject
from bok_choy.promise import EmptyPromise
from selenium.webdriver.support.ui import Select
from selenium.webdriver.common.keys import Keys
from ..common.utils import click_css, confirm_prompt
from .course_page import ... | edxzw/edx-platform | common/test/acceptance/pages/studio/overview.py | Python | agpl-3.0 | 29,354 | [
"VisIt"
] | 3746febdd13f76e8ec22f30c995381efabc14555d27012695022fd852c30bb22 |
#!/usr/bin/env python
#
# Copyright 2008,2009,2011,2012 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3, or (at ... | trondeau/gr-osmosdr | apps/osmocom_siggen_base.py | Python | gpl-3.0 | 21,935 | [
"Gaussian"
] | 89626664ace896b6c1c3398754fb00db1393934c4a5b301ac6d1cac6ebf92731 |
##
# Copyright 2013 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
# Flemish Research Foundation (FWO)... | wpoely86/easybuild-easyblocks | easybuild/easyblocks/g/gromacs.py | Python | gpl-2.0 | 9,193 | [
"Gromacs"
] | d79c094b30b6f8aad9f683fb045caba796386ac0b391d5035115cfbeb16e5ff3 |
#!/usr/bin/env python
#
# Copyright (c) 2001 - 2016 The SCons Foundation
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to us... | EmanueleCannizzaro/scons | test/Parallel/duplicate-target.py | Python | mit | 3,380 | [
"VisIt"
] | 868936a2553c028615ab028f08c7f7d894147f9719c2ba97ba73148374b8c523 |
# -*- coding: utf-8 -*-
import codecs
import json
import os
import tempfile
from django import forms
from django.core.urlresolvers import reverse
from django.test.client import RequestFactory
from mock import patch
from nose.tools import eq_
from pyquery import PyQuery as pq
from mkt.developers.views import standalo... | shahbaz17/zamboni | mkt/developers/tests/test_views_validation.py | Python | bsd-3-clause | 9,132 | [
"exciting"
] | 6f70080ec13baeb8d63ac57c86421313721801d4612307fea4e86ea3f12dff25 |
# -*- coding: utf-8 -*-
# (c) 2016, Adrian Likins <alikins@redhat.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at you... | broferek/ansible | test/units/cli/test_galaxy.py | Python | gpl-3.0 | 50,746 | [
"Galaxy"
] | c0b482ba26de7646080b8bb33947565767564c5ab02a71b0cba58f5e1f256055 |
# -*- coding: utf-8 -*-
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
Built-in distribution-creation functions.
"""
from warnings import warn
import numpy as np
from astropy import units as u
from .core import Distribution
__all__ = ['normal', 'poisson', 'uniform']
def normal(center, *, std=... | pllim/astropy | astropy/uncertainty/distributions.py | Python | bsd-3-clause | 6,654 | [
"Gaussian"
] | c42dd216e1a0c69e490d61fb1b09076b19404c9c809f8f2594a05375328d6013 |
'''Datastream reader for the ncreview tool.
This contains the classes nessecary to read a single datastream into a
Datastream object, collecting useful summary information about the datastream
which can be compared against another datastream with datastreamdiff, or
written out as a JSON string for display on the ncrev... | CesiumLifeJacket/overwatch | dummy_project/ncr/datastream.py | Python | mit | 38,685 | [
"NetCDF"
] | ea39ef70e5335520781e50a4c2fecccbc5aa279144041ea26588389452601024 |
"""
Test LogRecord Creation
"""
__RCSID__ = "$Id$"
#pylint: disable=invalid-name
import unittest
from DIRAC.FrameworkSystem.test.testLogging.Test_Logging import Test_Logging, cleaningLog
from DIRAC.FrameworkSystem.test.testLogging.Test_Logging import gLogger, oldgLogger
class Test_LogRecordCreation(Test_Logging):... | arrabito/DIRAC | FrameworkSystem/test/testLogging/Test_LogRecordCreation.py | Python | gpl-3.0 | 9,918 | [
"DIRAC"
] | a602542d0e932173fcaaea0bf8d21a88bc998ca193483a3f91ca1bdaf4c7d2d1 |
#!/usr/local/bin/python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2012 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unle... | Ishayahu/MJCC-tasks | snmp/Gdrive/sample.old.py | Python | mit | 28,530 | [
"VisIt"
] | de98bc3a141b6e4caf443d98a59a1ea775c219014cc8430e2190614fe618f474 |
#
# Copyright (C) 2007 Greg Landrum
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
import os
import unittest
from rdkit import Chem
from rdkit.Ch... | rvianello/rdkit | rdkit/Chem/Subshape/UnitTestSubshape.py | Python | bsd-3-clause | 2,495 | [
"RDKit"
] | f3e488f4a2ff7eb9547b8a1f868a45b668e8790e7a92e581262190d14b4449ad |
import wx
import wx.lib.filebrowsebutton as filebrowse
ID= wx.ID_ANY
class NewFileDialog(wx.Dialog):
def __init__(self, parent):
wx.Dialog.__init__(self, id=ID, name='', parent=parent, size=wx.Size(600, 250), title=u'Import Abundance File')
self.rbFam = wx.RadioBox(self, id=ID, choices... | ecotox/pacfm | pacfm/view/gui/helper/dialog/new_file_dialog.py | Python | mit | 5,295 | [
"BLAST"
] | c648f270b0e035916c6fec740d72cc840c95d86f353f282442cc1efae1cda475 |
# drizzle/base.py
# Copyright (C) 2005-2012 the SQLAlchemy authors and contributors <see AUTHORS file>
# Copyright (C) 2010-2011 Monty Taylor <mordred@inaugust.com>
#
# This module is part of SQLAlchemy and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""
.. dialect:: drizz... | fredericmohr/mitro | mitro-mail/build/venv/lib/python2.7/site-packages/sqlalchemy/dialects/drizzle/base.py | Python | gpl-3.0 | 15,008 | [
"VisIt"
] | 2c1dd8c8390be8c67655c4743ecdc30b09c99d70eb74eb4b331c46f6b04db256 |
# This module is used by:
# homer_pipeline_run.py, ...
import os, sys, subprocess
import glob
import pysam
# Define constants
#HEP = "/seq/epigenome01/Rusty/Homer/homer/bin/" # Homer executables path
#PEP = "/seq/software/picard/current/bin/" # Picard executables path
#ITEN = "/xchip/igv/tools/./igvtools" # IGV tools... | dfernan/de | myutils/myos.py | Python | mit | 8,050 | [
"pysam"
] | ef040bab992d3a2a42461c8b85efbd04dace6e0418ab55523e7730072b33dc2e |
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Eric Larson <larson.eric.d@gmail.com>
# Oleh Kozynets <ok7mailbox@gmail.com>
# Guillaume Favelier <guillaume.favelier@gmail.com>
# jona-sassenhagen <jona.sassenhagen@gmail.com>
# Joan Massich <mailsik@gmail.com>
#... | larsoner/mne-python | mne/viz/_brain/_brain.py | Python | bsd-3-clause | 154,775 | [
"VTK"
] | 3eeee7e6955a39a3e8f8275cba1fc42755f6f58a117dccd172b9603ac0595cef |
""" # lint-amnesty, pylint: disable=cyclic-import
Test utils for CCX
"""
import datetime
import pytz
from django.conf import settings
from common.djangoapps.student.roles import CourseCcxCoachRole, CourseInstructorRole, CourseStaffRole
from common.djangoapps.student.tests.factories import UserFactory
from lms.djan... | eduNEXT/edunext-platform | lms/djangoapps/ccx/tests/utils.py | Python | agpl-3.0 | 4,216 | [
"VisIt"
] | 5a8e46b1b3a088792f4c37a8d717079ebcf4869382dbcf1b43d22c0b2d385ad1 |
"""Tests of VASP calculator interface."""
import os
import tarfile
import numpy as np
from phonopy.file_IO import parse_FORCE_SETS
from phonopy.interface.phonopy_yaml import read_cell_yaml
from phonopy.interface.vasp import Vasprun, read_vasp
data_dir = os.path.dirname(os.path.abspath(__file__))
def test_read_vasp... | atztogo/phonopy | test/interface/test_vasp.py | Python | bsd-3-clause | 1,449 | [
"VASP",
"phonopy"
] | 4518c254d47655fbf8d8074da979c47603dd6defe46850016a54a26f95d1508e |
"""
Settings for trans girls rule the world
"""
import os
BLOG_URL = 'transgirlsruletheworld.tumblr.com'
TUMBLR = [
os.environ['TRANS_GIRLS_CONSUMER_KEY'],
os.environ['TRANS_GIRLS_CONSUMER_SECRET'],
os.environ['TRANS_GIRLS_OAUTH_TOKEN'],
os.environ['TRANS_GIRLS_OAUTH_SECRET']
]
TAGS = [
'trans wom... | Deafjams/trans_girls_rule_the_world | trans_girls_rule_the_world/settings.py | Python | mit | 3,922 | [
"Octopus"
] | 5921868f2c36221f94457dfdb13d271844000c28a9e3c39b3f92606f5ffd8dae |
# -*- coding: utf-8 -*-
# Copyright (c) 2013 Kai Kratzer, Universität Stuttgart, ICP,
# Allmandring 3, 70569 Stuttgart, Germany; all rights
# reserved unless otherwise stated.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by... | freshs/freshs | client/main_client.py | Python | gpl-3.0 | 2,805 | [
"ESPResSo"
] | 266cf96984d4cb501d71967c309dc588e5c0d4be2f218a6973148de0b234a631 |
''' GGUSTicketsCommand
The GGUSTickets_Command class is a command class to know about
the number of active present opened tickets.
'''
__RCSID__ = '$Id$'
import urllib2
from DIRAC import S_ERROR, S_OK
from DIRAC.Core.LCG.GGUSTicketsClient import GGUSTicketsClient
from DIRAC.Core.Utilities.SitesDIRACGOCDBmappin... | andresailer/DIRAC | ResourceStatusSystem/Command/GGUSTicketsCommand.py | Python | gpl-3.0 | 4,883 | [
"DIRAC"
] | b7b8a6f1827993ab5a40b328bf5a6d9e5fb7dca04d28c9adf3a29a646fd91b28 |
# -*- coding: utf-8 -*-
"""
/***************************************************************************
ReconstructLine
QGIS tool to reconstruct linear features from points
The main idea of the processing is to constrict Hamiltonian path.
To do it we use 1-d Self Organising Map. It allows:
order data points
co... | nextgis/ngq_compulink | qgis-installer/customization-conf/plugins/reconstruct_line/connector.py | Python | gpl-2.0 | 7,988 | [
"Gaussian"
] | c84ad8999a8faa27053785cfafb7ad018da69cb62c3de3e8691f5670b2fd81b6 |
""" Refresh local CS (if needed)
In every gConfig
"""
__RCSID__ = "$Id$"
import threading
import thread
import time
import random
from DIRAC.ConfigurationSystem.Client.ConfigurationData import gConfigurationData
from DIRAC.ConfigurationSystem.Client.PathFinder import getGatewayURLs
from DIRAC.FrameworkSystem.Clie... | andresailer/DIRAC | ConfigurationSystem/private/Refresher.py | Python | gpl-3.0 | 6,648 | [
"DIRAC"
] | afab7a081f607f8c401f361bff691a70dbc8be2a05e812bc56d1979c966c8d60 |
import unittest
from test import test_support
from itertools import *
import weakref
from decimal import Decimal
from fractions import Fraction
import sys
import operator
import random
import copy
import pickle
from functools import reduce
maxsize = test_support.MAX_Py_ssize_t
minsize = -maxsize-1
def onearg(x):
'... | mancoast/CPythonPyc_test | cpython/277_test_itertools.py | Python | gpl-3.0 | 67,677 | [
"GULP"
] | 2ef7f81b61f5c48eb9f37484b4eeac169c2698be943887cc3b93818c37c14f91 |
# This file is part of Buildbot. Buildbot is free software: you can
# redistribute it and/or modify it under the terms of the GNU General Public
# License as published by the Free Software Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without eve... | anish/buildbot | master/buildbot/scripts/devproxy.py | Python | gpl-2.0 | 7,905 | [
"ParaView"
] | db6a85bc3344f3efd2acb21a1fdfbceb6b953450641560788c4f586043c590b9 |
# coding=utf-8
"""This module, test_network.py, is a quick test file."""
#from finance.data_related import data_scraper as ds
#from universal_code import debugging as dbg
#from universal_code import output_coloring as oc
import libraries.universal_code.output_coloring as oc
#from z_code_archive.finance.data_related ... | utarsuno/quasar_source | deprecated/neural_networks/test_network.py | Python | mit | 4,205 | [
"NEURON"
] | 957b2892df91ca3148b394cff45d115da6e8650681c9695313e1f0bcdae2ce47 |
# coding=utf-8
# Copyright 2014 Pants project contributors (see CONTRIBUTORS.md).
# Licensed under the Apache License, Version 2.0 (see LICENSE).
from __future__ import (absolute_import, division, generators, nested_scopes, print_function,
unicode_literals, with_statement)
from textwrap import... | pgroudas/pants | tests/python/pants_test/targets/test_wiki_page.py | Python | apache-2.0 | 3,075 | [
"exciting"
] | 1a8ebdec47094d29a29a274c2cc239660133a3bed2aeb31b8c62ee930cafcd3a |
# This file is part of Indico.
# Copyright (C) 2002 - 2021 CERN
#
# Indico is free software; you can redistribute it and/or
# modify it under the terms of the MIT License; see the
# LICENSE file for more details.
import re
import pytest
from indico.modules.events.abstracts.models.abstracts import Abstract, AbstractS... | pferreir/indico | indico/modules/events/abstracts/notifications_test.py | Python | mit | 10,626 | [
"VisIt"
] | 4f3bb6491266939e78bd63417c939d89681943ff55a0350f0d5419ee9139cf50 |
#!/usr/bin/python
import os, sys, json
from DNN import Connection, Neuron, Net
if not os.path.exists(sys.argv[4]):
eta = float(sys.argv[5])
alpha = float(sys.argv[6])
topology = [int(number) for number in sys.argv[7:]]
myNet = Net(topology = topology, eta = eta, alpha = alpha)
with open(sys.argv[4], mode = 'w') as... | aaiijmrtt/LEARNING | v1/dividedata.py | Python | mit | 777 | [
"NEURON"
] | 9a35598617db21e846ecb0283268c5b1827beb7345f600289050ff1bec2ceb73 |
""" pytest for WorkflowTasks
"""
# pylint: disable=protected-access,missing-docstring,invalid-name
from mock import MagicMock
import pytest
from DIRAC import gLogger
from DIRAC.Interfaces.API.Job import Job
# sut
from DIRAC.TransformationSystem.Client.WorkflowTasks import WorkflowTasks
gLogger.setLevel("DEBUG")
mo... | DIRACGrid/DIRAC | src/DIRAC/TransformationSystem/Client/test/Test_Client_WorkflowTasks.py | Python | gpl-3.0 | 5,073 | [
"DIRAC"
] | 42c28e9c7ee2d4470edebe924a58a945ebae51e445d038356d969ec8d6c4d4fb |
from __future__ import division
from __future__ import print_function
#!/usr/bin/python
# small programm to loop the plot_msg function
# until all desired RGB images are processed
from time import time, sleep
import os.path
from os import remove
if __name__ == '__main__':
from plot_msg import plot_msg, print_... | meteoswiss-mdr/monti-pytroll | scripts/loop_msg.py | Python | lgpl-3.0 | 4,838 | [
"NetCDF"
] | 59abf9fef03a3a9e65a7a651616728696683eb00b589e3e1160fec8a6e1a3f33 |
#!/bin/env python3
from VASP import readCell, writeVasp
import sys
if len(sys.argv) < 2:
print('')
print('Usage: %s cell_file1 cell_file2 ...' % sys.argv[0].split('/')[-1])
print('Please try again')
exit(1)
print('')
print('################## This script converts .cell into POSCAR ##################'... | Mabinogiysk/VASP-script | cel2vas.py | Python | gpl-2.0 | 780 | [
"VASP"
] | 7b9c617c187d303cb0c69965221fd779b00a3b5780440c7c5904ceb5b54f07d2 |
# Copyright 2022 The jax3d Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | google-research/jax3d | jax3d/projects/nesf/nerfstatic/models/nerf_renderer.py | Python | apache-2.0 | 14,731 | [
"Gaussian"
] | c7133f39008d9af13d6c68c1ddf21ee86b49f091ce87d307110c285ddc670613 |
"""
Contains the relevant conversions of HTML and LaTeX entities that will not be
correctly converted elsewhere. This is taken from adsabs/adsdata authored by
J. Luke.
"""
__author__ = 'J. Luke'
__maintainer__ = 'J. Elliott'
__copyright__ = 'Copyright 2015'
__version__ = '1.0'
__email__ = 'ads@cfa.harvard.edu'
__statu... | adsabs/ADSfulltext | adsft/entitydefs.py | Python | gpl-3.0 | 48,476 | [
"Bowtie"
] | 94b6596641bc7cadf9bf2228627b3e60eff1164902ea48a159928762695d3996 |
# Copyright (c) 2017 The WebRTC project authors. All Rights Reserved.
#
# Use of this source code is governed by a BSD-style license
# that can be found in the LICENSE file in the root of the source
# tree. An additional intellectual property rights grant can be found
# in the file PATENTS. All contributing project au... | endlessm/chromium-browser | third_party/webrtc/tools_webrtc/vim/webrtc.ycm_extra_conf.py | Python | bsd-3-clause | 12,354 | [
"VisIt"
] | 80027ec901080759d6d6f1bbbba4180ce2eaea7333510c2e439a28cd642d8f08 |
# -*- coding: utf-8 -*-
import re
from unidecode import unidecode
import Levenshtein
from brewerynamematcher import strip_punctuation
BEER_TYPES = [
u'American Pale Ale',
u'Abbey Brown Ale',
u'Barleywine',
u'Imperial Wheat Stout',
u'Imperial Coffee Stout',
u'Imperial Stout',
u'Imperial P... | atlefren/beertools | beertools/beernamematcher.py | Python | mit | 15,663 | [
"Amber"
] | 26351894ae8c40151f84b469ca0b815fbfcc8b9959a58e649b45e0b4283419ef |
import codecs
import contextlib
import io
import locale
import sys
import unittest
import warnings
import encodings
from test import support
if sys.platform == 'win32':
VISTA_OR_LATER = (sys.getwindowsversion().major >= 6)
else:
VISTA_OR_LATER = False
try:
import ctypes
except ImportError:
ctypes = N... | IronLanguages/ironpython3 | Src/StdLib/Lib/test/test_codecs.py | Python | apache-2.0 | 118,059 | [
"FEFF"
] | 00b18b0c8942d0f92db06e4930a9678fd2192dd68200a63d7f41ed86bbef7a37 |
# ida-brk-comment script for IDA
# (c) AVET Information and Network Security Sp. z o.o. 2012
# For more info visit us at: http://www.avet.com.pl
# Not for commercial use
from idaapi import *
chooser = Choose([],'Breakpoint comments',1)
comments = {}
breakpoints = {}
brk_no = GetBptQty()
print 'Breakpoints = %d' % brk... | avet/ida-avet-scripts | ida-brk-comment.py | Python | gpl-3.0 | 898 | [
"VisIt"
] | 5d8e621afc6907058cb6da857696346fef76c034ecc72d0dc140ebbec8c317c1 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | jjas0nn/solvem | tensorflow/lib/python2.7/site-packages/tensorflow/contrib/learn/python/learn/learn_io/graph_io.py | Python | mit | 32,824 | [
"VisIt"
] | 659816ea5b5db77571e8d344b53ac63f1599c89d535f5d393f6542f72d823474 |
import astropy
import numpy as np
import astropy.units as u
from astropy.coordinates import SkyCoord
#from astroy.wcs import WCS
class Galaxy:
def __init__(self,Name=None):
if not Name:
self.Name = 'M33'
self.Distance = 8.4e5*u.pc
self.CenterPosition = SkyCoord(23.461667... | low-sky/py-low-sky | DiskCoord.py | Python | mit | 1,368 | [
"Galaxy"
] | deec2e46353dc4d3364ca03701c0c782842bbca7b288ab86dbfcaa0cd33e8542 |
# glviewloader.py ---
#
# Filename: loadcell.py
# Description:
# Author: Subhasis Ray
# Maintainer:
# Created: Thu Feb 4 20:34:34 2010 (+0530)
# Version:
# Last-Updated: Sat Jun 26 15:46:24 2010 (+0530)
# By: Subhasis Ray
# Update #: 129
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#... | BhallaLab/moose-thalamocortical | pymoose/gui/demo/glviewloader.py | Python | lgpl-2.1 | 3,648 | [
"MOOSE"
] | 4b4338d78cd4c25c1a9c3d5aba4eab75cdbdb5d93554591bd00e5f948493a96c |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
urlpatterns = [
# Django Admin
url(r'^admin/', in... | PythonicNinja/ExerciseAgregator | config/urls.py | Python | bsd-3-clause | 1,099 | [
"VisIt"
] | 4bbfcec16e7a9cd123994d204fb01aa09e405dadc0f4ebdc95e21876d8d9b986 |
# Copyright 1999 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Code for more fancy file handles.
Classes:
UndoHandle File object decorator with sup... | NirBenTalLab/proorigami-cde-package | cde-root/usr/lib64/python2.4/site-packages/Bio/File.py | Python | mit | 5,642 | [
"Biopython"
] | 812119bc0f0360347202efc11b4a8881f29f1fd5bcd0f1a7026bdfe1b41ec8f5 |
# -*- coding: utf-8 -*-
"""Misspellings module.
Take a list of files, check them against a list of misspelled words.
"""
# For Python 2.5
from __future__ import with_statement
from collections import defaultdict
import os
import re
import sys
import string
_NORM_REGEX = re.compile('([a-z])([A-Z][a-z])')
_WORD_R... | lyda/misspell-check | misspellings_lib.py | Python | gpl-3.0 | 142,097 | [
"exciting"
] | 37fc40e2c536208a61aaf91dd7bb22781b46f6ef087f449c1439646c601f4c81 |
"""
This module contains the OHSU-specific image collections.
The following OHSU QIN scan numbers are captured:
* 1: T1
* 2: T2
* 4: DW
* 6: PD
These scans have DICOM files specified by the
:attr:`qipipe.staging.image_collection.Collection.patterns`
``dicom`` attribute. The T1 scan has ROI files as we... | ohsu-qin/qipipe | qipipe/staging/ohsu.py | Python | bsd-2-clause | 6,736 | [
"VisIt"
] | ab59de267178b424df230b89f5cf59658a6769bbee5d4195bcfca7a57cf36e35 |
import sys
from time import time, ctime
import numpy as np
from math import sqrt, pi
from ase.units import Hartree, Bohr
from gpaw import extra_parameters
from gpaw.utilities.blas import gemv, scal, axpy
from gpaw.mpi import world, rank, size, serial_comm
from gpaw.fd_operators import Gradient
from gpaw.response.math_f... | qsnake/gpaw | gpaw/response/chi.py | Python | gpl-3.0 | 18,183 | [
"ASE",
"GPAW"
] | c31be5462b2d71331902c9a589aafbf79024da1f28951d7f63085f5b45fa94de |
from brian import *
from itertools import product
import neuroTools as postdoc
from scipy.signal import fftconvolve
from time import time
import sortUtils as tech
import ISIpy as ISIpy
filenames = ['/Volumes/My Book/Rat/010113_real/continuous/ch045/ch045.spiketimes',
'/Volumes/My Book/Rat/010113_real/continuous/ch... | mac389/brainpy | lib/Analysis.py | Python | gpl-3.0 | 1,379 | [
"Brian"
] | 8a04fe3f90804bf48134137b69d2950376bafba4bcb33d2a0f21e25e0a9d4115 |
"""
# Notes:
- This simulation seeks to emulate the COBAHH benchmark simulations of (Brette
et al. 2007) using the Brian2 simulator for speed benchmark comparison to
DynaSim. However, this simulation includes CLOCK-DRIVEN synapses, for direct
comparison to DynaSim's clock-driven architecture. The synaptic connec... | asoplata/dynasim-benchmark-brette-2007 | output/Brian2/brian2_benchmark_COBAHH_clocksyn_lodens_1000/brian2_benchmark_COBAHH_clocksyn_lodens_1000.py | Python | gpl-3.0 | 3,781 | [
"Brian"
] | 59ec1ddd8ea18e47c2b9edc1078785f0bcd7eea19701405cfbc13379d6019836 |
"""
"""
import os
from pulsar.client import action_mapper
from pulsar.client import staging
from pulsar.client.staging import PulsarOutputs
from pulsar.client.staging.down import ResultsCollector
import logging
log = logging.getLogger(__name__)
def postprocess(job_directory, action_executor):
# Returns True if ... | natefoo/pulsar | pulsar/managers/staging/post.py | Python | apache-2.0 | 4,001 | [
"Galaxy"
] | b9a7d321109e50cbccdffd7c1e47200d101d6afdb8c11bd295d4fb52ddba4edd |
# A translation of calc_fitness.pl into python! For analysis of Tn-Seq.
# This script requires BioPython, which in turn has a good number of dependencies (some optional but very helpful).
# How to install BioPython and a list of its dependencies can be found here: http://biopython.org/DIST/docs/install/Installation.htm... | jsa-aerial/aerobio | Scripts/calc_fitness.py | Python | mit | 43,828 | [
"Biopython",
"Bowtie"
] | be07857ca6c72fdba73364c73ce32d778040ced919881f0f69dc6936d9635223 |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/view/controls/field_label.py | Python | gpl-2.0 | 4,766 | [
"VisIt"
] | 0e611738bd97120d1d751732e8f01cca8f3007498d226723a131a4766baa45fd |
"""
View for Courseware Index
"""
# pylint: disable=attribute-defined-outside-init
from datetime import datetime
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.contrib.auth.models import User
from django.core.context_processors import csrf
from django.core.urlreso... | ampax/edx-platform | lms/djangoapps/courseware/views/index.py | Python | agpl-3.0 | 22,329 | [
"VisIt"
] | 330c39f6deba737339797712bed59bfcabf9ff6061348dc9412988849d262973 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Directadmin API - Python implementation of Directadmin Web API
Copyright (C) 2009, Andrés Gattinoni
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, e... | kuzmiigo/python-directadmin | directadmin/api.py | Python | gpl-3.0 | 45,535 | [
"VisIt"
] | cb9989012c768b5e9f753cf698d2e2c6fa68a91cfc40073e952542a5b2dedb4a |
#
# QAPI command marshaller generator
#
# Copyright IBM, Corp. 2011
#
# Authors:
# Anthony Liguori <aliguori@us.ibm.com>
# Michael Roth <mdroth@linux.vnet.ibm.com>
#
# This work is licensed under the terms of the GNU GPLv2.
# See the COPYING.LIB file in the top-level directory.
from ordereddict import OrderedDict... | aliguori/qemu | scripts/qapi-commands.py | Python | gpl-2.0 | 11,164 | [
"VisIt"
] | 2d87031a3fbd1fe9ee338161bde9ff349e5927a5c7cd0c50eaccdd2c7be23aaa |
#!/usr/bin/env python
"""
Artificial Intelligence for Humans
Volume 2: Nature-Inspired Algorithms
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2014 by Jeff Heaton
Licensed under the Apache License, Versi... | trenton3983/Artificial_Intelligence_for_Humans | vol2/vol2-python-examples/lib/aifh/genetic.py | Python | apache-2.0 | 8,374 | [
"VisIt"
] | 2c328b782b77249269aa060d152b22ea3fde45130c6c607434edfd97588b08fe |
# (c) 2015 - Jaguar Land Rover.
#
# Mozilla Public License 2.0
#
# Library to process updates
import json
import os
import subprocess
import dbus
from collections import deque
import manifest
#
# Simplistic storage of successfully completed
# operations
#
class ManifestProcessor:
def __init__(self, storage... | magnusfeuer/genivi_software_management | software_loading_manager/manifest_processor.py | Python | mpl-2.0 | 5,305 | [
"Jaguar"
] | 6847d11b49691e029b920cfbd9d0c44158e2217c95864f3cb98118f2096fb938 |
#!/usr/bin/env python
# -- Content-Encoding: UTF-8 --
"""
Beans to store the description of compositions and components
:author: Thomas Calmant
:license: Apache Software License 2.0
:version: 3.0.0
..
Copyright 2014 isandlaTech
Licensed under the Apache License, Version 2.0 (the "License");
you may not ... | ahmadshahwan/cohorte-runtime | python/cohorte/composer/beans.py | Python | apache-2.0 | 6,750 | [
"VisIt"
] | 505dc90f7e17178d3b1998ba2c8bdc868db98ad769d552897cef462261426265 |
import sys
import numpy as np
import matplotlib.pyplot as plt
dimensions=[2,3,4,5,6,7,8,9,10]
print("Gaussian dimensional analysis \n")
#Decision Tree
p_1_dt = []
p_2_dt = []
p_3_dt = []
for dim in range(2,11):
temp1,temp2,temp3 = np.loadtxt("../dt_gauss/"+str(dim)+'Dgauss_dt_p_values_1_2_3_std_dev.txt')
p_1_dt.ap... | weissercn/MLTools | Dalitz_simplified/evaluation_of_optimised_classifiers/gauss_analysis/plot_gauss_dimenionality_analysis.py | Python | mit | 8,958 | [
"Gaussian"
] | e224f38d4fb7503c2f7d312cee42002d923ecc71eb1a3a0d2f16b483a08f4c81 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | hfp/tensorflow-xsmm | tensorflow/python/autograph/pyct/ast_util.py | Python | apache-2.0 | 11,832 | [
"VisIt"
] | b4aa6bd486e54cca3d87666f70080a80cea93eb0daace49e97650a5cf1f35e3a |
# encoding: utf-8
"""crystal.py - Window for setting up arbitrary crystal lattices
"""
import gtk
from gettext import gettext as _
from ase.gui.widgets import pack, cancel_apply_ok, oops
from ase.gui.pybutton import PyButton
from ase.gui.setupwindow import SetupWindow
from ase.gui.status import formula
from ase.lattic... | suttond/MODOI | ase/gui/crystal.py | Python | lgpl-3.0 | 22,834 | [
"ASE",
"CRYSTAL"
] | 40292a5ff4cda21483afb8c75e6ffc9772239ea16c78df8ffc064a73e6ed62e0 |
#!/usr/bin/env python
### DO NOT USE THIS SCRIPT
# Instead, use 'fasta_reservoir_sampling.py'
"""Extract approximately n random sequences from a fasta file. To be sure to get
the exact desired number of sequences, boost the number of wanted sequences by a
certain amount. Eg:
150% for 300 sequences or less
120% for 1... | enormandeau/Scripts | fasta_extract_random_sequences.py | Python | gpl-3.0 | 1,598 | [
"Biopython"
] | da87803d4b2266182ba4b08ab22fdd7abd1f442b2a297f03e884a4471c7fec86 |
##
# Copyright 2009-2016 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
# Flemish Research Foundation ... | wpoely86/easybuild-easyblocks | easybuild/easyblocks/n/netcdf_fortran.py | Python | gpl-2.0 | 2,770 | [
"NetCDF"
] | b011b786d58ffed26f7ce08e3d2802916d7fccb9c439e0a11eca1c70304b0a2c |
"""
DIRAC API Class
All DIRAC functionality is exposed through the DIRAC API and this
serves as a source of documentation for the project via EpyDoc.
The DIRAC API provides the following functionality:
- A transparent and secure way for users
to submit jobs to the Grid, monitor them and
re... | miloszz/DIRAC | Interfaces/API/Dirac.py | Python | gpl-3.0 | 107,757 | [
"DIRAC"
] | 0e24253045ba993ae251da3a7d12dd40c01160546de13ffb0a3fa1ac8eef9dc1 |
# $Id: VTKBlender.py,v 1.19 2008-07-03 15:13:21 cwant Exp $
#
# Copyright (c) 2005, Chris Want, Research Support Group,
# AICT, University of Alberta. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met... | unterweg/peanoclaw | blender/VTKBlender.py | Python | bsd-3-clause | 11,458 | [
"VTK"
] | c0626a3e65bcc11380de12d94e6d7a2eaa04303222aba99122d54244288427d3 |
'''
Created on Oct 22, 2013
@author: J.Akeret
'''
from __future__ import print_function, division, absolute_import, unicode_literals
import numpy
from cosmoHammer.pso.ParticleSwarmOptimizer import ParticleSwarmOptimizer
from cosmoHammer.pso.CurvatureFitter import CurvatureFitter
class BestFitPositionGenerator(object... | cosmo-ethz/CosmoHammer | cosmoHammer/pso/BestFitPositionGenerator.py | Python | gpl-3.0 | 6,049 | [
"Gaussian"
] | cd6297e15ceed0b4de7058605070dc5df96a8a6d060255bfa92373571cee320d |
#!/usr/bin/env python
# vim: ai ts=4 sts=4 et sw=4
# see LICENSE file (it's BSD)
from __future__ import with_statement
import re, csv, datetime, time
import errors, message
import traceback
import StringIO
import threading
# arch: pacman -S python-pyserial
# debian: apt-get install pyserial
import serial
# Constan... | adammck/pygsm | pygsm/gsmmodem.py | Python | bsd-3-clause | 41,599 | [
"FEFF"
] | 97300336382841af1efb6b3f67eec3bed209e8248cc064efc863869ead2e4ddc |
import os
from setuptools import setup
readme_path = os.path.join(os.path.abspath(os.path.dirname(__file__)),
'README.md')
with open(readme_path, 'r', encoding='utf-8') as fh:
long_description = fh.read()
def main():
install_list = ['pysb>=1.3.0,<=1.9.1', 'objectpath', 'rdflib==4.... | johnbachman/indra | setup.py | Python | bsd-2-clause | 6,066 | [
"Pybel"
] | f16cb92c55a595ac4c983efede864d83c13c7836593d4074a8ab72712d9b9f51 |
#!/usr/bin/env python
#
# Copyright 2002 by Michael Hoffman. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Access to General Feature Format databases created with BioPerl (... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/GFF/__init__.py | Python | gpl-2.0 | 15,023 | [
"BioPerl",
"Biopython"
] | f37bbec97b14629ba36f3c346de681b23e57b68d8483e21147d3e32d2544bd8c |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/qcdb/cov_radii.py | Python | lgpl-3.0 | 5,328 | [
"Psi4"
] | 6de2c3cc87948e3451386fc5b4bb3885cb19a8591cfc8f284e80063b6c55e337 |
#
# Copyright (c) 2010 Brian E. Granger
#
# This file is part of pyzmq.
#
# pyzmq is free software; you can redistribute it and/or modify it under
# the terms of the Lesser GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option)... | felipecruz/zmqpy | zmqpy/tests/pyzmq_tests/__init__.py | Python | bsd-2-clause | 3,215 | [
"Brian"
] | 65736c2d710376209f5c94d2d8b579a882d4983dba4b5d836c5955de97a40a48 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under th... | alejob/mdanalysis | package/MDAnalysis/analysis/hbonds/hbond_autocorrel.py | Python | gpl-2.0 | 20,554 | [
"MDAnalysis"
] | 2599252e3e35374e2832e510f3d897ad950ae3455d25e5cb21437ed3e7f97c65 |
#! /usr/bin/env python
###=============================================================
### Multifit 3
### Nicola Ferralis <feranick@hotmail.com>
### The entire code is covered by GNU Public License (GPL) v.3
###=============================================================
### Uncomment this if for headless servers.
... | feranick/MultiFit | Archive/multifit_3/multifit.py | Python | gpl-3.0 | 25,354 | [
"Gaussian"
] | fab42ca1dff4e32cfe0c3880d996e8891a0ce8c0464d5c20cad20cfe284bf0f2 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements the pickler objects used in abinitio.
"""
from __future__ import unicode_literals, division, print_function
import pickle
from pymatgen.core.periodic_table import Element
class Pmg... | sonium0/pymatgen | pymatgen/serializers/pickle_coders.py | Python | mit | 2,839 | [
"pymatgen"
] | 544965cb5b79ef2d924aa874e340f855a0e0410ccdb837b20327e4122e5c622f |
from ase import *
from gpaw import GPAW
atoms = molecule('C6H6')
atoms.center(vacuum=3.5)
calc = GPAW(h=.21, xc='PBE', txt='benzene.txt', nbands=18)
atoms.set_calculator(calc)
atoms.get_potential_energy()
calc.set(fixdensity=True, txt='benzene-harris.txt',
nbands=40, eigensolver='cg', convergence={'bands': ... | freephys/python_ase | doc/tutorials/wannier/benzene.py | Python | gpl-3.0 | 393 | [
"ASE",
"GPAW"
] | f5d2d1909696632966b7c0a32333a5d4f58383bdc5581e21d4d6cad97020f8e5 |
import sys
import numpy.fft as fft
from ocelot import MagneticLattice
from ocelot.cpbd.optics import *
from ocelot.utils.xdb import Xdb
sys.path.append('../utils/')
from xfel_utils import *
def test_twiss():
xdb = Xdb(index_file='/home/iagapov/data/xdb/test/index.h5', mode='r')
f = xdb.read_undulator_config... | sserkez/ocelot | utils/xdb_cli.py | Python | gpl-3.0 | 18,311 | [
"VisIt"
] | d4ff34d1d93d47678667a95fedfa2be3417da45f87734ca81078153c4f518d7e |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | sarvex/tensorflow | tensorflow/python/ops/image_ops_impl.py | Python | apache-2.0 | 226,930 | [
"Gaussian"
] | 8daf1ea2325f286a5f0139516490d3f0da3f3537bccfd93180e19727380454df |
########################################################################
# $HeadURL$
########################################################################
""" :mod: FTSSubmitAgent
====================
FTS Submit Agent takes files from the TransferDB and submits them to the FTS using
FTSRequest helper cl... | sposs/DIRAC | DataManagementSystem/Agent/FTSSubmitAgent.py | Python | gpl-3.0 | 12,093 | [
"DIRAC"
] | 149d164aeda1437991280be655a0c9739081c8bea783bb6efca822bd907089bb |
'''This script demonstrates how to build a variational autoencoder with Keras.
Reference: "Auto-Encoding Variational Bayes" https://arxiv.org/abs/1312.6114
'''
import numpy as np
import matplotlib.pyplot as plt
from scipy.stats import norm
from keras.layers import Input, Dense, Lambda, Layer, concatenate
from keras.mo... | Fuchai/Philosophy-Machine | vae_mining/unsampledvae.py | Python | apache-2.0 | 5,741 | [
"Gaussian"
] | d7c108fb3267a1d073545726c8ea4421e8a48d6b3948738335872aec475a2e18 |
import logging
import os
import re
import socket
import sys
import time
from optparse import make_option
from django.conf import settings
from django.core.management.base import BaseCommand, CommandError
from django_extensions.management.technical_response import \
null_technical_500_response
from django_extensio... | rodo/django-extensions | django_extensions/management/commands/runserver_plus.py | Python | mit | 16,094 | [
"VisIt"
] | 0d4a0b8fd3f8e624d2b5a77f65a10f95651e6ba178933d8a00163a7313015652 |
# -*- coding: utf-8 -*-
# Copyright 2012 splinter authors. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
import tempfile
import time
import re
import sys
from contextlib import contextmanager
from selenium.common.exceptions import NoSuchEle... | houllette/ducktheinternet | splinter/driver/webdriver/__init__.py | Python | mit | 22,049 | [
"VisIt"
] | e5c847b84215b82a36ee28621bc3236b12131f7ddb15f78674b503ff9e87bb28 |
# $HeadURL: $
''' CacheFeederAgent
This agent feeds the Cache tables with the outputs of the cache commands.
'''
from DIRAC import S_OK#, S_ERROR, gConfig
from DIRAC.AccountingSystem.Client.ReportsClient import ReportsClient
from DIRAC.Core.Base.... | calancha/DIRAC | ResourceStatusSystem/Agent/CacheFeederAgent.py | Python | gpl-3.0 | 6,141 | [
"DIRAC"
] | 637ac4978565c30f5244131f5b32c9d51509a730c62755919693212e5c0875de |
"""
Do the initial configuration of a DIRAC component
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
__RCSID__ = "$Id$"
from DIRAC.Core.Utilities.DIRACScript import DIRACScript as Script
Script.setUsageMessage(
"\n".join(
[
__d... | ic-hep/DIRAC | tests/Jenkins/dirac-cfg-add-option.py | Python | gpl-3.0 | 1,441 | [
"DIRAC"
] | 66a0508364c605a02cb1a7a1c440304700e7ea4ffad47f2c26b86239375b3ccc |
# -*- coding: utf-8 -*-
#Copyright Aksyonov D.A
from __future__ import division, unicode_literals, absolute_import, print_function
import itertools, os, copy, math, glob, re, shutil, sys, pickle, gzip, shutil, random
import re, io, json
import pprint
from textwrap import wrap
import numpy as np
#additional packages... | dimonaks/siman | siman/classes.py | Python | gpl-2.0 | 245,897 | [
"ABINIT",
"Jmol",
"Quantum ESPRESSO",
"VASP",
"phonopy",
"pymatgen"
] | 5902f947e53caa370492e50cd871daf7bedecd1f83cc3ef40435537cf952043f |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright 2010 British Broadcasting Corporation and Kamaelia Contributors(1)
#
# (1) Kamaelia Contributors are listed in the AUTHORS file and at
# http://www.kamaelia.org/AUTHORS - please extend this file,
# not this notice.
#
# Licensed under the Apache License, Ve... | sparkslabs/kamaelia | Sketches/MPS/BugReports/FixTests/Kamaelia/Kamaelia/Codec/Dirac.py | Python | apache-2.0 | 10,572 | [
"DIRAC"
] | 65ec795d87257053791cc2927fdc92da8ccb8dcf87f5566c3a90317bb58760e2 |
import textwrap
import io
from cssypy.visitors import flatteners, formatters
from cssypy import parsers, errors
from cssypy import csstokens as tokens
from cssypy.nodes.util import dump
from cssypy.nodes import *
from .. import base
class Flattener_TestCase(base.TestCaseBase):
def stylesheet_to_string(self, sty... | colossalbit/cssypy | cssypy/tests/visitors/test_flatteners.py | Python | bsd-3-clause | 5,500 | [
"VisIt"
] | d165c414bbfda49fe544a4645db62b571e0ddd307c7dd68a947b228c2b136f6c |
import math
from neat.iznn.iznn_pure import Synapse
from neat.iznn.network import Network
class Neuron(object):
'Neuron based on the integrate and fire model'
def __init__(self, bias = 0, tau = 10, vrest = -70, vreset = -70, vt = -55):
'''
tau, vrest, vreset, vthreshold are the parameters of th... | davidmfinol/py3NEAT | neat/ifnn/ifnn_pure.py | Python | gpl-3.0 | 2,131 | [
"NEURON"
] | 49998c6c8aa137f4d249fcac416c071e22d2a4ae20d49a6af7a61df1707da484 |
#pylint: disable=no-init
from stresstesting import MantidStressTest
from mantid.simpleapi import CreateWorkspace, LinearBackground, FlatBackground, Gaussian, CalculateChiSquared, mtd
from CrystalField.fitting import makeWorkspace
from PyChop import PyChop2
import numpy as np
class CrystalFieldPythonInterface(MantidSt... | ScreamingUdder/mantid | Testing/SystemTests/tests/analysis/CrystalFieldPythonInterface.py | Python | gpl-3.0 | 19,208 | [
"CRYSTAL",
"Gaussian"
] | a5a98685da10a73a8a7ba9d66b47a0bfccaf37f980700e9f45b8fd62d253897c |
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