text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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#
# tsne.py
#
# Implementation of t-SNE in Python. The implementation was tested on Python 2.7.10, and it requires a working
# installation of NumPy. The implementation comes with an example on the MNIST dataset. In order to plot the
# results of this example, a working installation of matplotlib is required.
#
# The ... | alexandonian/lightning | lightning_fuse/tsne.py | Python | apache-2.0 | 5,780 | [
"Gaussian"
] | 10255154da6f9148673909f4c652ccf083815fc6dbf3f7196cd2232d7c9eceb8 |
# vim: set et sw=4 sts=4 fileencoding=utf-8:
#
# Copyright (c) 2016 David Topping.
# All Rights Reserved.
# This file is part of umansysprop.
#
# umansysprop is free software: you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation, eit... | loftytopping/UManSysProp_public | umansysprop/activity_coefficient_models_dev.py | Python | gpl-3.0 | 128,172 | [
"Avogadro",
"Pybel"
] | 939f47f9818d40d8e770ea8b91e3e53d69ca3e93611d940f03be001e6907211c |
# To build out the data you'll need to jump into the Django shell
#
# $ python manage.py shell
#
# and run the build script with
#
# $ from data.v2.build import build_all
# $ build_all()
#
# Each time the build script is run it will iterate over each table in the database,
# wipe it and rewrite each row... | PokeAPI/pokeapi | data/v2/build.py | Python | bsd-3-clause | 78,761 | [
"CRYSTAL"
] | c1a7fd28898308ed208707102910f9a8a1b741407427db9c31f7b7083ac23aa4 |
# #START_LICENSE###########################################################
#
# Copyright (C) 2009 by Jaime Huerta Cepas. All rights reserved.
# email: jhcepas@gmail.com
#
# This file is part of the Environment for Tree Exploration program (ETE).
# http://ete.cgenomics.org
#
# ETE is free software: you can redistribute... | xguse/ete | ete_dev/phylo/reconciliation.py | Python | gpl-3.0 | 5,509 | [
"VisIt"
] | 5841b8db15fba39daff37b635612849873d468a7ac12b320eac29e31f8a354b6 |
from subprocess import call
import matplotlib.pyplot as plt
import numpy as np
import healpy as hp
import sys
import time
spice_exe='spice'
spice_data='spice_data.fits'
spice_noise='spice_noise.fits'
spice_mask='spice_mask.fits'
spice_dl='spice_dl.dat'
spice_nl='spice_nl.dat'
spice_bl='spice_bl.dat'
spice_crr='spice_... | tbs1980/cosmo-codes | spicy/spice_cl.py | Python | mpl-2.0 | 7,498 | [
"Galaxy"
] | f6f720eb0d0858ec652dfb984d1e391028324be4076c4b01fc5b644ef6c98d2f |
from __future__ import division
import scipy as sp
import quantities as pq
import neo
from progress_indicator import ProgressIndicator
import signal_processing as sigproc
import tools
import copy as cp
from . import SpykeException
def psth(
trains, bin_size, rate_correction=True, start=0 * pq.ms,
sto... | rproepp/spykeutils | spykeutils/rate_estimation.py | Python | bsd-3-clause | 10,728 | [
"Gaussian"
] | d7e0cb346ba631a0576d3a150dbc690ece22a8dfc312d860cb95b9e90e59d26b |
# -*- coding: utf-8 -*-
"""
pepper.py
=========
.. argparse::
:module: pepper
:func: create_parser
:prog: pepper
.. moduleauthor:: Adam Gagorik <adam.gagorik@gmail.com>
"""
import langmuir as lm
import numpy as np
import collections
import argparse
import sys
import os
desc = """
Add pepper to phase(s).
... | LangmuirSim/langmuir | LangmuirPython/surface/pepper.py | Python | gpl-2.0 | 5,178 | [
"Mayavi",
"VTK"
] | d7998187730760b609b0a83aafcbc040be16de4c74cdbfeaa2be1ce6abd9232d |
# -*- coding: utf-8 -*-
# Copyright 2007-2020 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | dnjohnstone/hyperspy | hyperspy/tests/signal/test_tools.py | Python | gpl-3.0 | 47,926 | [
"Gaussian"
] | 50ceda9bae6976d1b74d8b413958d6ee8dc4e36bec1c01fb1855210f183587bd |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/controls/filter_operator.py | Python | gpl-2.0 | 5,612 | [
"VisIt"
] | 4d6ee8365ce6e5d97bf8502fecf43d1a9ccd54ec42eef401a7db5689c72aaab0 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
import numpy as np
import os
import shutil
import sisl
from ...plot import Plot, entry_point
from ...plotutils import ... | zerothi/sisl | sisl/viz/plots/experimental/ldos.py | Python | mpl-2.0 | 15,303 | [
"SIESTA"
] | 433e2d5b4eee1a7ff98ffb1ea116b967f2a52fd14c77380f40d49bbc047fd5ca |
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Base.Client import Client
from DIRAC.Core.Utilities import DEncode
class UserProfileClient(object):
def __init__(self, profile, rpcClientFunctor=Client):
self.rpcClientFunctor = rpcClientFunctor
self.profile = profile
def __getRPCClient(self):
... | DIRACGrid/DIRAC | src/DIRAC/FrameworkSystem/Client/UserProfileClient.py | Python | gpl-3.0 | 3,157 | [
"DIRAC"
] | 916dc0d3a7bc80ad585bfcfab0ceb61b19ba4e6976620b9a8b50279df28459f8 |
"""Contains the MoveIn transition class."""
# move_in.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import time
import pygame
from mpf.system.timing i... | spierepf/mpf | mpf/media_controller/transitions/move_in.py | Python | mit | 4,479 | [
"Brian"
] | fa1ef028f09ea108a0baa8b09f4a3aa3c2a042a38abedda34d3c05841969cd97 |
"""
pyDatalog
Copyright (C) 2012 Pierre Carbonnelle
Copyright (C) 2004 Shai Berger
This library is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation; either version 2 of the
License, or (at your option) any lat... | pcarbonn/pyDatalog | pyDatalog/pyParser.py | Python | lgpl-2.1 | 36,233 | [
"VisIt"
] | bf402b96223a8d32a9be9d7b62fb71caf90efb7fc78f03ce005f6dbe179621d0 |
# -*- coding: utf-8 -*-
"""
===============================================================================
Cubic: Generate lattice-like networks
===============================================================================
"""
import numpy as np
import scipy as sp
from openpnm.network import GenericNetwork
from ope... | TomTranter/OpenPNM | openpnm/network/Cubic.py | Python | mit | 12,176 | [
"ParaView"
] | d27dc9129d5eb27caf400ab5272804a41b4cc1d00ea2749c0e92aed5840c50e6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
################################################################################
#
# MEASURE - Master Equation Automatic Solver for Unimolecular REactions
#
# Copyright (c) 2010 by Joshua W. Allen (jwallen@mit.edu)
#
# Permission is hereby granted, free of charge, to... | jwallen/MEASURE | measure/output.py | Python | mit | 14,194 | [
"ChemPy"
] | 00216d8355614e288f0e1c3fb5cbf88dfa8ffbdbc0a0e06983f941c8631254b7 |
# Copyright 2007 by Tiago Antao. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
from __future__ import print_function
from os import sep
import re
from functools import reduce... | poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/Bio/PopGen/SimCoal/Template.py | Python | apache-2.0 | 7,595 | [
"Biopython"
] | 918f4259dfdbef048b8d7816624c36b8dfdd39069b6f34eb955602b7898c99e9 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyHaphpipe(PythonPackage):
"""HAplotype and PHylodynamics pipeline for viral assembly,
... | LLNL/spack | var/spack/repos/builtin/packages/py-haphpipe/package.py | Python | lgpl-2.1 | 2,151 | [
"BLAST",
"BWA",
"Bioconda",
"Biopython"
] | aa2d52676b346969452d8868cb5c01e684cc3be78d7ab0798b6f20ec63d89732 |
"""
In this example we solve a scalar Laplace-Beltrami problem with a
similar discretisation method to the one used in tracefem.py. However,
we use a 3D (background mesh dimension) problem and higher order method
this time. To be robust w.r.t. the interface position also in the
condition number we use the normal diffus... | ngsxfem/ngsxfem | demos/tracefem.py | Python | lgpl-3.0 | 3,982 | [
"ParaView",
"VTK"
] | 703194d50697d8d660a9985ccaec8e7c68b280edf3c8afabf8c774a6065a25d5 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | eadgarchen/tensorflow | tensorflow/contrib/distributions/python/ops/mvn_diag.py | Python | apache-2.0 | 8,077 | [
"Gaussian"
] | d058b149346344246f26cbbf02da9aa2247b5b4c46aba46fcd35d2d3c28745ef |
from JumpScale import j
from flask import Flask,jsonify,make_response,g, session,redirect
from flask.ext.admin import Admin
from flask.ext.httpauth import HTTPBasicAuth
from flask_debugtoolbar import DebugToolbarExtension
auth = HTTPBasicAuth()
app = Flask(__name__)
# set a 'SECRET_KEY' to enable the Flask session... | Jumpscale/web | examples/restonly/start.py | Python | apache-2.0 | 2,812 | [
"VisIt"
] | 093ce688180ca4100964079e1f58559b266a487208ba7b1e4b191fad698921ac |
#!/usr/bin/env python
from scipy.io import netcdf
import matplotlib.pyplot as plt
import numpy as np
import os
import argparse
def get_data(file,vars=[]):
try:
f=netcdf.netcdf_file(file,'r')
except IOError:
print('Error: Cannot open file'+file)
return 0
if vars == []: vars=f.varia... | lstagner/FIDASIM-GUI | fidaTools.py | Python | mit | 7,193 | [
"NetCDF"
] | 0a9eaec960b92ee9f1c376de50c6cfcf2382acc5a4397ca2a62fe331d73cf80d |
# Copyright 2010-2017, The University of Melbourne
# Copyright 2010-2017, Brian May
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | brianmay/karaage | karaage/templatetags/pipeline.py | Python | gpl-3.0 | 1,423 | [
"Brian"
] | 96652bb0a8f5daae4c984991a0ef7a86af56700988dd7b96d209b168b987e65b |
# coding=utf-8
"""
Unit Tests for sickbeard/numdict.py
"""
# pylint: disable=line-too-long
from __future__ import print_function
import os.path
import sys
import unittest
sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), '../lib')))
sys.path.insert(1, os.path.abspath(os.path.join(os.path.d... | Thraxis/pymedusa | tests/numdict_tests.py | Python | gpl-3.0 | 19,558 | [
"Octopus"
] | 774ed6d9fabc1dfcafc0f57bafa78a82a7ec82c147b8f6b9fbabf6f3befb63db |
"""
Test functions for multivariate normal distributions.
"""
from __future__ import division, print_function, absolute_import
import pickle
from numpy.testing import (assert_allclose, assert_almost_equal,
assert_array_almost_equal, assert_equal,
assert_array_les... | josephcslater/scipy | scipy/stats/tests/test_multivariate.py | Python | bsd-3-clause | 59,570 | [
"Gaussian"
] | 61eac90dc3994623206bb8f613375d2f52b7cfa42df3598159ac8a76d4c27186 |
# Copyright 2011-2014, Damian Johnson and The Tor Project
# See LICENSE for licensing information
"""
Basic enumeration, providing ordered types for collections. These can be
constructed as simple type listings...
::
>>> from stem.util import enum
>>> insects = enum.Enum('ANT', 'WASP', 'LADYBUG', 'FIREFLY')
>>... | DigiThinkIT/stem | stem/util/enum.py | Python | lgpl-3.0 | 4,353 | [
"Firefly"
] | 170b82aae4c314d797396eb3b1c46f0892d8fa5ed0b13aea58b86f64c0b48380 |
tests = [("python", "testMolDraw2D.py", {}), ]
longTests = []
if __name__ == '__main__':
import sys
from rdkit import TestRunner
failed, tests = TestRunner.RunScript('test_list.py', 0, 1)
sys.exit(len(failed))
| rvianello/rdkit | Code/GraphMol/MolDraw2D/Wrap/test_list.py | Python | bsd-3-clause | 220 | [
"RDKit"
] | 8b1aa56cd40b4f3241d3d0459b009277d1c0d536e3dc90eedc926bf45710fc75 |
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
import pandas as pd
from scipy.special import gamma as Gamma
from scipy.integrate import quad
G = 4.300918e-6 ## in units solar mass, km/s kpc
GEV2cm5toMsol2kpc5 = 2.2482330e-07
GEVcm2toMsolkpc2 = 8.5358230e-15
def integrate_J_spherical_alphabe... | jls713/jfactors | spherical/spherical_Jfactors.py | Python | mit | 26,599 | [
"Gaussian"
] | 90711219faeeac3337835087c2bfa19b726660c20f4a980d9487781f2809c864 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/r-acme/package.py | Python | lgpl-2.1 | 2,254 | [
"Bioconductor"
] | a719dbe393448fc808ab4f192fd62a2156f3d2300deb399907cb00d7d6ae0821 |
"""
Copyright 2014 Sotera Defense Solutions, Inc.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or... | Sotera/Datawake | server/datawake/plugin/scraper.py | Python | apache-2.0 | 4,427 | [
"VisIt"
] | 2df2cc3584694e835e7796ea2228bfff3236e492c8c70bc6692fd5e5e7f4103e |
# glclient.py ---
#
# Filename: glclient.py
# Description:
# Author: Subhasis Ray
# Maintainer:
# Created: Thu Feb 4 14:52:22 2010 (+0530)
# Version:
# Last-Updated: Sat Feb 13 20:38:12 2010 (+0530)
# By: Subhasis Ray
# Update #: 129
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
# ... | BhallaLab/moose-thalamocortical | pymoose/gui/glclient.py | Python | lgpl-2.1 | 2,574 | [
"MOOSE"
] | 67f0a43b85c30a4f4ceee31b81cb3ff5b0abeaaf6ec4d4bc3e0e96afb57113e9 |
import numpy as np
from ase import Atoms
from gpaw import GPAW
from gpaw.xc.sic import SIC
from gpaw.test import equal
a = 7.0
atom = Atoms('N', magmoms=[3], cell=(a, a, a))
molecule = Atoms('N2', positions=[(0, 0, 0), (0, 0, 1.14)], cell=(a, a, a))
atom.center()
molecule.center()
calc = GPAW(xc=SIC(),
eig... | robwarm/gpaw-symm | gpaw/test/scfsic_n2.py | Python | gpl-3.0 | 609 | [
"ASE",
"GPAW"
] | b5a6cdc2e358db30b4cd8e2f6982d7d5ea407f6fe7175121c9ca681ac6306b50 |
# Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved.
#
# This work is licensed under the Creative Commons Attribution-NonCommercial
# 4.0 International License. To view a copy of this license, visit
# http://creativecommons.org/licenses/by-nc/4.0/ or send a letter to
# Creative Commons, PO Box 1866, Mountain ... | microsoft/DiscoFaceGAN | training/dataset.py | Python | mit | 12,220 | [
"VisIt"
] | 92f23cf2c5ba17975c0b25592ccd13329e9a7a6933c31bbee48af423485c708e |
"""Classes for use with the Gaussian Cube file format
Provides a Cube class with reading and writing functions
"""
from __future__ import division
import numpy as np
import copy as cp
import asetk.atomistic.fundamental as fu
import asetk.atomistic.constants as constants
import matplotlib.mlab as mlab
class Cube(obj... | ltalirz/asetk | asetk/format/cube.py | Python | mit | 21,858 | [
"ASE",
"Gaussian"
] | 733d3c3d4d00cf1ec1c37cd119e391e9600e84de87469838e644ada8ba8e9ea0 |
from __future__ import absolute_import, division, print_function
import os
import numpy
import json
import sys
import re
import scipy.signal
import logging
import ast
import inspect
import collections
import numbers
try:
import cPickle as pickle
except:
import pickle
from collections import namedtuple, Ordered... | hotpxl/mxnet | example/reinforcement-learning/dqn/utils.py | Python | apache-2.0 | 10,786 | [
"Gaussian"
] | 25c7d3be7c5965c3db0e7c1af780c514305ed7dd64ab0fd6a2886b7717552fc0 |
"""
Testing for the forest module (sklearn.ensemble.forest).
"""
# Authors: Gilles Louppe,
# Brian Holt,
# Andreas Mueller,
# Arnaud Joly
# License: BSD 3 clause
import pickle
from collections import defaultdict
from itertools import combinations
from itertools import product
import numpy ... | moutai/scikit-learn | sklearn/ensemble/tests/test_forest.py | Python | bsd-3-clause | 41,768 | [
"Brian"
] | 49e869256726c759cbbd60197b1d06899648edaa591e56c45e616f58de3a7f76 |
#!/usr/bin/env python
import sys
import unittest
import vtk
from PyQt5 import QtWidgets, QtCore
from peacock.ExodusViewer.ExodusViewer import main
from peacock.utils import Testing, qtutils
from mooseutils import message
class TestExodusViewer(Testing.PeacockImageTestCase):
"""
Testing for ExodusViewer.
... | Chuban/moose | python/peacock/tests/exodus_tab/test_ExodusViewer.py | Python | lgpl-2.1 | 6,586 | [
"VTK"
] | 337f6741865df9f36df5e9afec270b9a192d81b70a2bd82e7735450a83b519a3 |
import psi4
import re
import os
import inputparser
import math
import warnings
from driver import *
from wrappers import *
from molutil import *
import p4util
from psiexceptions import *
def run_psi4_gamess_mos(name, **kwargs):
r"""Function encoding sequence of PSI module and plugin calls so that
mos can be c... | lothian/psi4_gamess_efp | pymodule.py | Python | lgpl-3.0 | 941 | [
"Psi4"
] | 7f8191da05a8ca98d2cc10325c22bd8fd7eafd670b003a5c993049df7330d32f |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RBiobase(RPackage):
"""Biobase: Base functions for Bioconductor.
Functions that ar... | rspavel/spack | var/spack/repos/builtin/packages/r-biobase/package.py | Python | lgpl-2.1 | 1,080 | [
"Bioconductor"
] | d703c3601956309c0b3a3b1bc16595382a80861ec4a7acdd7289d8061a37eff3 |
# (c) 2014 Michael DeHaan, <michael@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | alexlo03/ansible | lib/ansible/playbook/role/metadata.py | Python | gpl-3.0 | 4,307 | [
"Galaxy"
] | 9a15446860d0c6210b018c553b6717ea147fde9a44c0982026947412c1e022d8 |
##
# Copyright 2013 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
# the Hercules foundation (http://w... | geimer/easybuild-easyblocks | easybuild/easyblocks/e/esmf.py | Python | gpl-2.0 | 4,100 | [
"NetCDF"
] | 9456726f3b5ddda4b1ecba97af739a163c18ea9713dfd335785986db2fe2175c |
#!/usr/bin/python
"""
UDP Communications Module
"""
import asyncore
import socket
import cPickle as pickle
import Queue as queue
from time import time as _time
from .debugging import ModuleLogger, bacpypes_debugging
from .core import deferred
from .task import FunctionTask
from .comm import PDU, Server
from .comm ... | JoelBender/bacpypes | py27/bacpypes/udp.py | Python | mit | 8,542 | [
"ASE"
] | 057286d01b359fdc2c87d1827c1c73b30f69595f627ef431f4031eacdad00f6f |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/r-annotationfilter/package.py | Python | lgpl-2.1 | 1,982 | [
"Bioconductor"
] | b00387c43cedac1efa1d903e3931895d9fa08390e064d681a5914aeae34b4541 |
from mumax2 import *
# Standard Problem 4
# define geometry
# number of cells
Nx = 128
Ny = 32
Nz = 1
setgridsize(Nx, Ny, Nz)
# physical size in meters
sizeX = 500e-9
sizeY = 125e-9
sizeZ = 3e-9
setcellsize(sizeX/Nx, sizeY/Ny, sizeZ/Nz)
# load modules
load('micromagnetism')
load('solver/rk12')
# set parameters... | mumax/2 | examples/stdproblem4.py | Python | gpl-3.0 | 1,416 | [
"VTK"
] | 6c7eb01120e865330b605aeb8a9ff84df513ef399c4d1efe696ecffe52b56fb1 |
# Copyright (c) 2018, Henrique Miranda
# All rights reserved.
#
# This file is part of the yambopy project
#
from yambopy import *
import shutil
ha2ev = 27.211396132
class YamboGreenDB(object):
"""
Read the green's functions calculated using yambo
These green's functions describe the spectral function of ... | alexmoratalla/yambopy | yambopy/dbs/greendb.py | Python | bsd-3-clause | 6,922 | [
"Yambo"
] | 134d895810b814e5a60f7122a46df73b3986e6a8cf20f2df780872ae37f8c735 |
"""
The effect of Sampling
----------------------
Figure 10.3
A visualization of aliasing in the Fourier transform. In each set of four
panels, the top-left panel shows a signal and a regular sampling function, the
top-right panel shows the Fourier transform of the signal and sampling
function, the bottom-left panel s... | nhuntwalker/astroML | book_figures/chapter10/fig_FFT_aliasing.py | Python | bsd-2-clause | 5,126 | [
"Gaussian"
] | 8553a55f6c0aad2a6d1ee461e521093214b40cb5f5b38b079bf17e1e048d41e8 |
#!/usr/bin/env python
#pylint: disable=missing-docstring
#################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment #
# #... | yipenggao/moose | python/chigger/tests/geometric/base/orientation.py | Python | lgpl-2.1 | 1,673 | [
"MOOSE",
"VTK"
] | c48311d50ab2385da080a974775a0853ceffa807bb522d74c2898d8e59236b63 |
"""API for traversing the AST nodes. Implemented by the compiler and
meta introspection.
"""
import typing as t
from .nodes import Node
if t.TYPE_CHECKING:
import typing_extensions as te
class VisitCallable(te.Protocol):
def __call__(self, node: Node, *args: t.Any, **kwargs: t.Any) -> t.Any:
... | mitsuhiko/jinja2 | src/jinja2/visitor.py | Python | bsd-3-clause | 3,572 | [
"VisIt"
] | 66678bb938faea2737e7eb851fed66d042978b0e0e6c30dbfd6b84ea1e6f3c58 |
"""
@name: PyHouse/src/Modules/Families/Null/_test/test_Null_device.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2015-2017 by D. Brian Kimmel
@license: MIT License
@note: Created on Jul 28, 2015
@Summary:
Passed all 1 tests - DBK - 2015-07-28
"""
__updated__ = '2019-... | DBrianKimmel/PyHouse | Project/src/Modules/House/Family/Null/_test/test_Null_device.py | Python | mit | 1,028 | [
"Brian"
] | 83effef33777c74e0fbf0fe41db6c4696603b0cf7a7f6fc62156d538b77ea257 |
# -*- coding: utf-8 -*-
from south.utils import datetime_utils as datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding model 'ClinicNameMapping'
db.create_table(u'core_clinicnamemappi... | praekelt/txtalert | txtalert/core/migrations/0021_auto__add_clinicnamemapping.py | Python | gpl-3.0 | 16,792 | [
"VisIt"
] | 5c52d6048a333a8d96337f0eb002fe2f92c37ea57377ebe56fac22c17c226557 |
# Select and average hourly data
#
# Ladybug: A Plugin for Environmental Analysis (GPL) started by Mostapha Sadeghipour Roudsari
#
# This file is part of Ladybug.
#
# Copyright (c) 2013-2015, Mostapha Sadeghipour Roudsari <Sadeghipour@gmail.com>
# Ladybug is free software; you can redistribute it and/or modif... | samuto/ladybug | src/Ladybug_Average Data.py | Python | gpl-3.0 | 16,554 | [
"EPW"
] | b2d6d5c1958a0cbe62c3295c395f559af79c7167aa85a486d0174f3118ba6238 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""nucmer.py
Provides helper functions to run nucmer from pdp
(c) The James Hutton Institute 2018
Author: Leighton Pritchard
Contact: leighton.pritchard@hutton.ac.uk
Leighton Pritchard,
Information and Computing Sciences,
James Hutton Institute,
Errol Road,
Invergowrie... | widdowquinn/find_differential_primers | diagnostic_primers/nucmer.py | Python | mit | 17,605 | [
"Biopython"
] | 1afc046c75be315e423d09fdbe1fd753c61d403b15bec8698b218b7f49f61def |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Given a input MAP file containing reads mapping on exon-exon junctions it will
remove the reads which have the mate mapping (i.e. second MAP input file
containing reads mapping on transcriptom) on other genes than those
containing the exons which form the exon-exon junc... | ndaniel/fusioncatcher | bin/remove_reads_exon_exon_psl.py | Python | gpl-3.0 | 10,470 | [
"Bowtie"
] | d02823b830bd2cc49a94dc22607e1d33229af972d4aaca74dff91a3f661afe9d |
"""
Holds user settings and various helper objects.
@since: 0.53
"""
# Copyright (C) 2011, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import support, _, logger
import os
try:
import ConfigParser
except ImportError:
import configparser as ConfigParser
from zero... | timdiels/0install | zeroinstall/injector/config.py | Python | lgpl-2.1 | 4,607 | [
"VisIt"
] | e339932115804c7b793f08a5c298158b9fd33d0b98b8e3a7d732550d85849e6c |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_loansearch.py | Python | gpl-2.0 | 3,828 | [
"VisIt"
] | ab40b6a2d775c6648d7c43af6dfe4889e17f7cc24fe358570b5820fd7576fa99 |
#
# Copyright (C) 2005 Stefan Seefeld
# All rights reserved.
# Licensed to the public under the terms of the GNU LGPL (>= 2),
# see the file COPYING for details.
#
__docformat__ = 'reStructuredText'
import sys, os, os.path, re, string, stat, tempfile
from Synopsis.config import version
class TempFile:
# Use tem... | stefanseefeld/synopsis | Synopsis/Parsers/Cpp/Emulator.py | Python | lgpl-2.1 | 14,113 | [
"ASE"
] | 4a13de4a40a29c840383eb7a3b73e53306be043af974a27fcc965827e65ad7d1 |
# import code_exercise as ce
# x=random.normal(scale=1.0, size=1000) + 1.
# ce.myplot(x, 0.3)
##
# Import libraries
from __future__ import print_function, absolute_import, division, unicode_literals
assert False # Code is now back in PH136 SVN as code_exercise.py
import numpy as np
import glob, os, sys
from xastr... | alfeinsod/xastropy | xastropy/PH136/exercises/code_exerc.py | Python | bsd-3-clause | 1,523 | [
"Gaussian"
] | 3116b335e41081a5b664e927891d572184e0ee3430842540d535f2c7aa1d704e |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/controls/delegates/datedelegate.py | Python | gpl-2.0 | 2,358 | [
"VisIt"
] | f179eca4afcd9cb2998557868ec9eed85b5e1555b9ce3eb06ec934e44ca05105 |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | lukeiwanski/tensorflow-opencl | tensorflow/python/ops/template.py | Python | apache-2.0 | 12,783 | [
"VisIt"
] | da72b8e2f88b41696c47bfcf07aedb72dde836cad8c46dfce57ac1d5e6c82694 |
from particle.ParticleFilter import ParticleFilter
from config.Config import config
import zmq
from data.MapLoader import loadRouteFromMap
generators = {}
mapDirectory = '/home/moe/PycharmProjects/dingge/app/map/'
context = zmq.Context()
socket = context.socket(zmq.PUB)
socket.bind("tcp://*:9955")
def particleFilterC... | icymorn/magnetic-info-process | particleWorkflow.py | Python | mit | 1,978 | [
"MOE"
] | 3cf3bda59eb32ba3396a850c456904577ad576af4b25ab3b5c11f5587fc71e35 |
import time
from lxml import etree
from tap.parser import *
from tap.settings import *
from tap.decorators import http_auth, tap_job_submission_request, access_job
from django.shortcuts import render, redirect
from django.views.decorators.csrf import csrf_exempt
from django.http import HttpResponse, HttpResponseBadRequ... | IntersectAustralia/asvo-tao | web/tap/views.py | Python | gpl-3.0 | 9,994 | [
"Galaxy"
] | 455bb6528adda1196f28ef7a7279d428c1570042bfbe826ec8e7aae21448eec9 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/integrator/StochasticVelocityRescaling.py | Python | gpl-3.0 | 1,912 | [
"ESPResSo"
] | 1cea19272f61ae45c8e7a72ffd0f44966a50aedb4014a58439725152eec0e869 |
#
# Copyright (C) 2020 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later vers... | fweik/espresso | testsuite/python/rotation.py | Python | gpl-3.0 | 5,980 | [
"ESPResSo"
] | d87dc75a3595c1b48d4f45bfa5e5a861cf6de761ed3f39ff28f3cceae5a16d43 |
"""blueskyutils.netcdf.pointextraction: Provides uilities for extracting data
from smoke dispersion nc files.
@see: https://github.com/ecolell/netcdf
"""
__author__ = "Joel Dubowy"
import datetime
import os
import netCDF4
__all__ = [
'PointExtractor'
]
class PointExtractor(object):
"""
Example:
... | pnwairfire/blueskyutils | blueskyutils/netcdf/pointextraction.py | Python | gpl-3.0 | 6,870 | [
"NetCDF"
] | 99815927522398c4d41f40ba23b3759c8c5ab4c285ea7f37b9b78e741dc1d6dd |
# (C) British Crown Copyright 2014 - 2015, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | mo-g/iris | lib/iris/tests/unit/analysis/stats/test_pearsonr.py | Python | gpl-3.0 | 6,579 | [
"NetCDF"
] | 33170a368c3085326e062a38a3650a2c1218a0e85bc52633feaf07b9713fb392 |
import vtk
from vtk.numpy_interface import dataset_adapter as dsa
import numpy as np
reader = vtk.vtkXMLUnstructuredGridReader()
reader.SetFileName("/raid/home/ksansom/caseFiles/mri/VWI_proj/case4/fluent_dsa/vtk_out/wall_outfile_node.vtu")
reader.Update()
N = reader.GetNumberOfTimeSteps()
print(N)
#N = test.GetNumber... | kayarre/Tools | vtk/post_proc_cfd_numpy.py | Python | bsd-2-clause | 8,365 | [
"VTK"
] | 5b6ad13a7371a1364ca22b63ad1c44d3a99ee3326f3a67be57fcb1a1604e6071 |
# Read 2 3D-coordinates from .trr trajectory files
# input: tpr_filename, the filename of .tpr file in Gromacs
# trr_filename, the filename of .trr file in Gromacs
# select_atoms_filename#, the filename including a command-line
# for keeping trajectory of the selected atoms
# output: coordinates#, xyz position ... | jht0664/Utility_python_gromacs | python/hjung/io.py | Python | mit | 25,757 | [
"Gromacs",
"MDAnalysis",
"OpenMM"
] | e7744f8fe74d6f79ac5ca439af70963998287f68befb1f0ab9ea399a3b73a250 |
# Copyright (C) 2011 by Brandon Invergo (b.invergo@gmail.com)
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import unittest
import os
import os.path
from Bio.Phylo.PAML import yn00
from Bio.Phylo.PA... | updownlife/multipleK | dependencies/biopython-1.65/Tests/test_PAML_yn00.py | Python | gpl-2.0 | 5,593 | [
"Biopython"
] | f0e9113ce5d98d613a8d756a3a4e53412b39f0f113a1bbd9e6130113dc4232cd |
import pysam
import sys
import csv
import os
import argparse
from numpy.random import choice
import random
from quicksect import IntervalNode
from random import randint, seed
def normalize(a):
b = a
s = sum(a)
if s == 0:
for i in a:
i = 1 / len(a)
else:
for i in a:
... | smangul1/UMI-Reducer | mRNA.abundance.py | Python | gpl-2.0 | 18,231 | [
"pysam"
] | 36ad7a111a5b2eadce66ef7386b320e2ab3b586a679292beb0bfe1d5ebcc2575 |
# coding: utf-8
# Distributed under the terms of the MIT License.
import unittest
import os
import numpy as np
from ababe.io.vasp import VaspInput, VaspOutput
from ababe.stru.scaffold import GeneralCell
testdata_dir = os.path.join(os.path.dirname(__file__), "test_files")
class TestVaspInput(unittest.TestCase):
... | unkcpz/ababe | ababe/io/tests/test_vasp.py | Python | mit | 4,280 | [
"VASP"
] | b076bcfc0bf36835878e82a24a16b0b78b8f8a447e2f6304d20332cfc66c5a6d |
"""
Tests for QE DFT calculations using the explicit interface.
"""
# pylint: disable=redefined-outer-name,unused-argument,protected-access
import os
import shutil
import tempfile
import pytest
import numpy as np
import z2pack
@pytest.fixture
def qe_system_new(sample):
"""
Create QE system with explicit in... | Z2PackDev/Z2Pack | tests/fp/test_espresso_new.py | Python | gpl-3.0 | 4,509 | [
"Wannier90"
] | 55b4d1d95f3c484a74a7a5c4bc7f80f2e5b602022a0d4337ed3d606019b8d8bf |
EVENT_CTRL = {
"_0": "Heartbeat",
"_1": "Trigger",
"_2": "Protocol Specific",
"_3": "Nodes Updated",
"_4": "System Config Updated",
"_5": "System Status",
"_6": "Internet Access",
"_7": "System Progress",
"_8": "Security System",
"_9": "System Alert",
"_10": "Electricity",
"_11": "Climate",
"_12": "AMI/SEP... | kevinkahn/softconsole | hubs/isy/isycodes.py | Python | apache-2.0 | 2,923 | [
"Elk"
] | 01e288392c3f75cdbda7164e3e0d0a8dbee6d8537cc75148986ea67ca89621d2 |
from __future__ import (division, print_function, absolute_import,
unicode_literals)
import numpy as np
from scipy import optimize, fftpack, signal
"""
This function is a modified version of the astroML wiener_filter function
https://github.com/astroML/astroML
Copyright (c) 2012-2013, Jacob ... | mrtommyb/ktransit | ktransit/wiener2.py | Python | gpl-3.0 | 11,099 | [
"Gaussian"
] | 987cba92aad671bd0237585c9d1d0106afabb8c1b8ac2b905a74dac8a7d17671 |
# -*- coding: utf-8 -*-
# Copyright 2007-2011 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | pburdet/hyperspy | hyperspy/signal.py | Python | gpl-3.0 | 175,800 | [
"Gaussian"
] | 662fe2924f6104a93e4446d1c293282ecfa08dc54281013c7a596aec55d70e35 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Interface with command line GULP.
http://projects.ivec.org
WARNING: you need to have GULP installed on your system.
"""
__author__ = "Bharat Medasani, Wenhao Sun"
__copyright__ = "Copyright 2013, The Mate... | fraricci/pymatgen | pymatgen/command_line/gulp_caller.py | Python | mit | 26,096 | [
"GULP",
"pymatgen"
] | 5fe15e1a87777916940349b558e6c1faf8e9f79f57d612c915df44486ffaeca5 |
#!/usr/bin/env python
'''
Author: Aditya Gilra, Jun 2016. (with inputs from Matthieu Gilson)
in Brian2rc3 for CAMP 2016.
'''
#import modules and functions to be used
from brian2 import * # importing brian also does:
# 'from pylab import *' which imports:
# matplot li... | h-mayorquin/camp_india_2016 | tutorials/LTPinnetworks2/Step1e_weight_distributions.py | Python | mit | 5,089 | [
"Brian",
"Gaussian",
"NEURON"
] | 81bf7099d6e53358b61342bf7edc827ede5cacf384b304f9b0ee66bf5b5ae438 |
"""
Tests the DQM Server class
"""
import json
import os
import threading
import pytest
import requests
import qcfractal.interface as ptl
from qcfractal import FractalServer, FractalSnowflake, FractalSnowflakeHandler
from qcfractal.testing import (
await_true,
find_open_port,
pristine_loop,
test_serv... | psi4/DatenQM | qcfractal/tests/test_server.py | Python | bsd-3-clause | 6,250 | [
"RDKit"
] | 8a64c53a9950118480ca9f81b69430380a9ac87970def1c7714c47a09107077e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2013 Radim Rehurek <me@radimrehurek.com>
# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
"""
Deep learning via word2vec's "skip-gram and CBOW models", using either
hierarchical softmax or negative sampling [1]_ [2]_.
The train... | chuckgu/Alphabeta | tensorflow/word2vec.py | Python | gpl-3.0 | 78,692 | [
"VisIt"
] | a3225c7aca0c35a18dccb7c014b871acaaf0442ecda930ba8ee1084280ab04a0 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
__author__ = "Andres Giordano"
__version__ = "3.0.0"
__maintainer__ = "Andres Giordano"
__email__ = "andresgiordano.unlu@gmail.com"
__status__ = "Produccion"
import argparse
from os.path import basename,dirname, join
import os
import matplotlib.cbook
import warnings
os.e... | INTA-Radar/radar-cmd | radar-cmd.py | Python | gpl-3.0 | 13,483 | [
"NetCDF"
] | 823f195f569db95d33679097e2545bbe62aa9a839d1f2b18102e098031ddb030 |
# Copyright (c) 2003-2010 Sylvain Thenault (thenault@gmail.com).
# Copyright (c) 2003-2010 LOGILAB S.A. (Paris, FRANCE).
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the L... | sloanyang/depends | third_party/pylint/checkers/format.py | Python | gpl-2.0 | 14,446 | [
"VisIt"
] | 992cad8f825d6acd0d47c531921a24718ae5bb748bb90f6f78c820cbe372c021 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkImageDotProduct(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vt... | nagyistoce/devide | modules/vtk_basic/vtkImageDotProduct.py | Python | bsd-3-clause | 508 | [
"VTK"
] | f94838a261fb4e4426cbb3f2e282bb406381e040b611648aaa82ce5a7bda3df2 |
# Copyright (c) Microsoft. All rights reserved.
# Licensed under the MIT license. See LICENSE.md file in the project root
# for full license information.
# ==============================================================================
from __future__ import print_function
import os
import math
import argparse
import ... | hjl/cntkdemo | AlexNetDemo/AlexNet_ImageNet_Distributed.py | Python | mit | 12,252 | [
"NEURON"
] | e2049ba4f54d7e500fa9c6ff1fa6ae62d1405130e65b95fafd83568087fd7c87 |
##
# title: BreadInterface.Navigator
# by: Brian Kim
# description: the class that manages a stack of Controllers
# using push and pop methods
#
import pygtk
pygtk.require('2.0')
import gtk
from Controller import Controller
from Lifecycle import Lifecycle
from DimensionChooser import DimensionChooser
##
# navigat... | briansan/BreadInterface | py/BreadInterface/Navigator.py | Python | bsd-2-clause | 2,352 | [
"Brian"
] | 19fd21eb80dfa5127e7f8a4cf39d34c50144a2109fd3a26e5a69e4272cde5b3a |
from lib_spm import *
#out_dir = os.path.join('/data42s/comparat/firefly/v1_1_0/figures', 'mass-redshift-presentation')
out_dir = os.path.join(os.environ['HOME'], 'wwwDir', 'firefly')
m_bins = n.arange(6.5, 13, 0.01)
p.figure(2, (6.5, 3.5))
p.axes([0.12,0.18,0.8,0.73])
for imf in imfs:
stellar_mass = imf+'stella... | JohanComparat/pySU | spm/bin_SMF/plot_distribution_masses.py | Python | cc0-1.0 | 5,029 | [
"Firefly",
"Galaxy"
] | c51b40bd258db335a46d9622f44633473760bc338f9557f53accaf9a0cb9b334 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyPymol(PythonPackage):
"""PyMOL is a Python-enhanced molecular graphics tool. It excels a... | LLNL/spack | var/spack/repos/builtin/packages/py-pymol/package.py | Python | lgpl-2.1 | 2,372 | [
"NetCDF",
"PyMOL"
] | 894354bd4f024c56b428b6fedff66aa59b02bd0350d4de9283ce9fc4f908d01a |
from __future__ import absolute_import, division, print_function
import numpy as np
import pandas as pd
import scipy.optimize as opt
from scipy.special import erf
from .due import due, Doi
__all__ = ["Model", "Fit", "opt_err_func", "transform_data", "cumgauss"]
# Use duecredit (duecredit.org) to provide a citation t... | geoffbacon/semrep | semrep/semrep.py | Python | mit | 5,759 | [
"Gaussian"
] | 4b7a9633a68dcf4f9f18739831440d1319393bc4c6c8134205cb5e80de9fef63 |
#! /bin/env python
import sys
import xml.dom.minidom
import numpy as np
from six.moves import xrange
from .encoders import encode
from .vtktypes import np_to_vtk_type, sys_to_vtk_endian
class VtkExtent(object):
def __init__(self, shape):
if len(shape) > 3:
raise ValueError("number of dimensi... | csdms/coupling | deprecated/printers/vtk/vtkxml.py | Python | mit | 7,023 | [
"VTK"
] | 79c29fd602c932e06de900a163506be9aee800085000e1450c3abdd586f50a53 |
#!/usr/bin/env python
import os
import time
import argparse
import logging
from logging.config import fileConfig
from parsers.phage_file import PhageDBReader
fileConfig('logging.ini')
logger = logging.getLogger()
def parse_args():
parser = argparse.ArgumentParser(description='Cleans up the results returned from... | arlissc/phageParser | filterByExpect.py | Python | mit | 1,334 | [
"BLAST"
] | 1943c59c9feb280559215bc4ebea3ce162f38dcbb9360f390408d7334c690aa2 |
"""A GTK dialog which lets the user add a new application to their desktop."""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _, gobject
import os
import gtk
from zeroinstall.gtkui import gtkutils
from zeroinstall import SafeException
fro... | res2k/0install | zeroinstall/gtkui/addbox.py | Python | lgpl-2.1 | 5,216 | [
"VisIt"
] | 339044013b4701e2ccf29b562e7cef73dc7b161b1c7cd119ef7f74c109449864 |
"""
Test functions for models.GLM
"""
from __future__ import division
from statsmodels.compat import range
import os
import numpy as np
from numpy.testing import (assert_almost_equal, assert_equal, assert_raises,
assert_allclose, assert_, assert_array_less, dec)
from scipy import stats
impor... | bert9bert/statsmodels | statsmodels/genmod/tests/test_glm.py | Python | bsd-3-clause | 72,739 | [
"Gaussian"
] | 8e3a59b9c8cad510d2d8164f0b73bb1d87ecb0f4cfc28ea473388571739661bb |
from __future__ import absolute_import, division, print_function
from copy import deepcopy
from panoptes_client.panoptes import (
LinkCollection,
LinkResolver,
PanoptesAPIException,
PanoptesObject,
)
from panoptes_client.project_role import ProjectRole
from panoptes_client.exportable import Exportable
... | zooniverse/panoptes-python-client | panoptes_client/project.py | Python | apache-2.0 | 6,034 | [
"Galaxy"
] | 22e4581fe53a8ab184d734c8cac84f1c69ff96d117759ac9f446a192ebe7646f |
#-------------------------------------------------------------------------------
# Name: tests
# Purpose: Definitions of all unit tests for the Open Anharmonic package.
#
# Author: Brian Skinn
# bskinn@alum.mit.edu
#
# Created: 30 Jul 2015
# Copyright: (c) Brian Skinn 2016
# License... | bskinn/opan | opan/tests.py | Python | mit | 7,545 | [
"Brian",
"ORCA"
] | d4a7c70f1771cc5c4842531785416cd37debacb30d32881a971e61d84ae14f4d |
""" Handler for logging in security.log.csv files
"""
import os
from DIRAC import gLogger, S_OK, S_ERROR, gConfig, rootPath
from DIRAC.Core.DISET.RequestHandler import RequestHandler
from DIRAC.Core.Utilities.File import mkDir
from DIRAC.FrameworkSystem.private.SecurityFileLog import SecurityFileLog
from DIRAC.Framewo... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/Service/SecurityLoggingHandler.py | Python | gpl-3.0 | 2,024 | [
"DIRAC"
] | 71f95b997a8c3cac388f31316b5962a8cc18c8e92e7a2cbf1b404805247dc6e6 |
#! /usr/bin/env python
from openturns import *
TESTPREAMBLE()
RandomGenerator.SetSeed(0)
try:
# Multivariate case
coll2 = DistributionCollection(0)
coll2.add(Dirac(1))
coll2.add(Dirac(2))
coll2.add(Bernoulli(0.7))
coll2.add(Uniform(3.0, 4.0))
d2 = ComposedDistribution(coll2)
coll1 = D... | dbarbier/ot-svn | python/test/t_ConditionalDistribution_std.py | Python | gpl-3.0 | 4,891 | [
"DIRAC"
] | 5138e6092b2b6be36468319b1001e51c6add9d7e40d4c7256a7d405fff4053d6 |
#######################################################################
#
#
# Next Event Renderer for Dreambox/Enigma-2
# Coded by Vali (c)2010
# Support: www.dreambox-tools.info
#
#
# This plugin is licensed under the Creative Commons
# Attribution-NonCommercial-ShareAlike 3.0 Unported License.
# To view ... | openhdf/enigma2-wetek | lib/python/Components/Renderer/NextEvent.py | Python | gpl-2.0 | 2,036 | [
"VisIt"
] | 4e3a0f2d45c7d96bb1d9b1e90f34dfde0cbcb6099f6cf5eab73879a6a18e2e52 |
# Name: Maud Ottenheijm
# Student nr: 10641785
#
# This file contains code for preprocessing the dataset from UNESCO on women in science,
# combining it with birth rate data government expences data (World Bank). Outputfile 'data_all.js' separates data
# per year, then per country with all values in one object. Data ... | MaudOtten/programmeerproject | WomenInScience/data/data_complete_parser_1.py | Python | unlicense | 17,724 | [
"BWA"
] | 7d4cccacd194b78045e0a89a798a2f74c7af63a725dd1b1cbbbce9b354e15986 |
from blackjackTable import Card, Deck, Hand
from collections import defaultdict, Counter
payouts = {'royalFlush':100,
'straightFlush':50,
'4ofakind':20,
'fullHouse':15,
'flush':10,
'straight':8,
'3ofakind':5,
'2pair':2,
'pair':1}
class pokerDeck(Deck):
suits = 'spades diamonds clubs hearts'.s... | techphenom/casino-games | videoPoker.py | Python | mit | 3,374 | [
"CASINO"
] | 3dad4fca6c55ff1fa09bd1397c0769ca5eaa52c08759399ff45441cf7a718e03 |
# Copyright 2008-2015 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | synsun/robotframework | src/robot/reporting/xunitwriter.py | Python | apache-2.0 | 3,405 | [
"VisIt"
] | b85966a2bab78001096d6e063afdfc500710e1b404b1153462a200aaa7cc889d |
########################################################################
# This program is copyright (c) Upinder S. Bhalla, NCBS, 2015.
# It is licenced under the GPL 2.1 or higher.
# There is no warranty of any kind. You are welcome to make copies under
# the provisions of the GPL.
# This program builds a multiscale ... | dilawar/moose-full | moose-examples/paper-2015/Fig4_ReacDiff/Fig4CDEF.py | Python | gpl-2.0 | 9,908 | [
"MOOSE"
] | 045eae1ce2f6ac346449b720a87fdb54a2f86c94475810f92eaa15234be1af70 |
# coding: utf-8
from __future__ import unicode_literals, division, print_function
import os
from pymatgen.util.testing import PymatgenTest
from pymatgen.core.structure import Structure
from pymatgen.core.units import Ha_to_eV
from pymatgen.io.abinitio.abiobjects import *
import warnings
test_dir = os.path.join(os.... | yanikou19/pymatgen | pymatgen/io/abinitio/tests/test_abiobjects.py | Python | mit | 4,064 | [
"pymatgen"
] | 164089edf826026c4d6ed231a304f3d82d2be92db4b2e9d77754b97c976de501 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | robertwb/incubator-beam | sdks/python/apache_beam/runners/direct/direct_runner.py | Python | apache-2.0 | 24,082 | [
"VisIt"
] | 8ddbfe3f5d4738bebd023dc402f4e80c07d26eee519c5568bb9bd5add053febf |
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