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#!/usr/bin/env python
from pymatgen.analysis.chemenv.utils.scripts_utils import compute_environments, welcome, thankyou
from pymatgen.analysis.chemenv.utils.chemenv_config import ChemEnvConfig
from argparse import ArgumentParser
import logging
__author__ = 'waroquiers'
def run_script():
m_description = 'Welco... | Bismarrck/pymatgen | scripts/get_environment.py | Python | mit | 1,353 | [
"pymatgen"
] | 2a97565afa04f346e5bf8736bb725126e811afdd6aaa00171c8007c16faff6b2 |
"""
Courseware views functions
"""
import logging
import urllib
import json
from collections import defaultdict
from django.utils import translation
from django.utils.translation import ugettext as _
from django.conf import settings
from django.core.context_processors import csrf
from django.core.exceptions import P... | kuiwei/kuiwei | lms/djangoapps/courseware/views.py | Python | agpl-3.0 | 39,275 | [
"VisIt"
] | c1656dc4a49646af8fe8ebf843de54cbbcc9701292e9d8054b95869cfa63a923 |
import numpy as np
from math import pi, log
# import pylab
from scipy import fft, ifft
from scipy.optimize import curve_fit
__doc__ = """
Code for peak detection in time series.
This code comes from
https://gist.github.com/sixtenbe/1178136
that is a python translation of the original matlab code:
http://billauer.co.i... | luca-penasa/cyclopy | cyclopy/External/Peakdetect.py | Python | gpl-2.0 | 28,083 | [
"TINKER"
] | 141bb2018ea3bcbce7ec757c7d83646316920a11246c8f45ccb92f7531745e60 |
import random
from math import *
import sys
import matplotlib.pyplot as plt
import numpy as np
"""
Define a robot class.
"""
class robot:
def __init__(self):
self.x = random.random()*world_size
self.y = random.random()*world_size
self.orientation = random.random()*1.0*pi
self.forward_noise = 0.0
self.... | ResByte/SLAM | occupancy.py | Python | gpl-2.0 | 4,230 | [
"Gaussian"
] | 3ddbe82449aa76c6cc22ee4e87763b8c61dcee051b292feac8e262195e37b745 |
#!/usr/bin/env python
#
# AST.py
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 2 as
# published by the Free Software Foundation.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; witho... | fedelemantuano/thug | thug/AST/AST.py | Python | gpl-2.0 | 6,647 | [
"VisIt"
] | eec2282a86f2f378ffab6130dcc2ff60953d211b63b7027eed55df95dde5fb7f |
import json
import pickle
import random
import nltk
import numpy as np
import tensorflow
import tflearn
from nltk.stem.lancaster import LancasterStemmer
stemmer = LancasterStemmer()
with open("intents.json") as intents_file:
data = json.load(intents_file)
try:
# Try to load pre-existing processed training... | Phixyn/ZoeyBot | neural_network_tim/neural_net.py | Python | gpl-3.0 | 9,758 | [
"NEURON"
] | 4ab0a0eb6f1520af85b68adf26e9131a77a9516f21bc6fbd6c5798678509396f |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | racemidev/WMI_cmd | pysamba/rpc/credentials.py | Python | gpl-2.0 | 724 | [
"VisIt"
] | 173cbdf039df56633417c246ad23b83ee7eff4d2f52c0b64283b0ccfbcf3a178 |
import enum
import sys
import unittest
from vendor.enum import Enum, IntEnum, unique, EnumMeta
from pickle import dumps, loads, PicklingError, HIGHEST_PROTOCOL
pyver = float('%s.%s' % sys.version_info[:2])
try:
any
except NameError:
def any(iterable):
for element in iterable:
if element:
... | bernardorufino/pick | src/vendor/enum/test_enum.py | Python | mit | 62,290 | [
"MOE"
] | 354ea85d2e71821994c366c104372e245a06f461034b3b265c9a59c50caf5e43 |
#!/usr/bin/env python2
# Copyright (c) 2014, Jelmer Tiete <jelmer@tiete.be>.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
# 1. Redistributions of source code must retain the above copyright
... | d00616/RIOT | dist/tools/cc2538-bsl/cc2538-bsl.py | Python | lgpl-2.1 | 42,557 | [
"CRYSTAL"
] | c4ea7eadddf4bed84d018141280775442141af9568f5cf46d1969dcfb71b6b0f |
# License: BSD 3 clause
import numpy as np
from tick.base.simulation import SimuWithFeatures
from tick.preprocessing.features_binarizer import FeaturesBinarizer
# TODO: something better to tune the censoring level than this censoring factor
class SimuCoxReg(SimuWithFeatures):
"""Simulation of a Cox regression ... | Dekken/tick | tick/survival/simu_coxreg.py | Python | bsd-3-clause | 17,328 | [
"Gaussian"
] | 651cbf075a2f79de47dc95b0de78fbe494697e03b2eb8df3cadd812b3c3023c1 |
# ################################################################
#
# Active Particles on Curved Spaces (APCS)
#
# Author: Silke Henkes
#
# ICSMB, Department of Physics
# University of Aberdeen
# Author: Rastko Sknepnek
#
# Division of Physics
# School of Engineering, Physics and Mathem... | sknepneklab/SAMoS | analysis/batch_nematic/batch_analyze_nematic_R40m.py | Python | gpl-3.0 | 2,362 | [
"VTK"
] | e204f3e8bd8ebe7eedbb6ed952fff2840df3628c2637939113ac4f4ab84b7a4b |
# coding=utf-8
# Copyright 2022 The Tensor2Tensor Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | tensorflow/tensor2tensor | tensor2tensor/data_generators/translate_enzh.py | Python | apache-2.0 | 10,367 | [
"VisIt"
] | 69146d5c87a8eb9085d3f03d967f16edfe8b6faef7640a158d43662a92eed865 |
# lintory - keep track of computers and licenses
# Copyright (C) 2008-2009 Brian May
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any ... | VPAC/lintory | lintory/mfields.py | Python | gpl-3.0 | 2,198 | [
"Brian"
] | 5b2379bec48942af31c367d703a7054ddcd6598545dce295e9f45ef4bdc82ca2 |
'''Term writing.'''
from aterm import types
from aterm import visitor
class Writer(visitor.Visitor):
'''Base class for term writers.'''
def __init__(self, fp):
visitor.Visitor.__init__(self)
self.fp = fp
class TextWriter(Writer):
'''Writes a term to a text stream.'''
def writeList(self, seq, begin, end,... | mewbak/idc | aterm/write.py | Python | lgpl-2.1 | 1,563 | [
"VisIt"
] | 323e6ee73cbde56b27ea066fff086f9470ab286825e92633131d99d613640307 |
"""Draw molecules in the Jupyter notebook."""
import os
import uuid
import IPython
from IPython.display import HTML, display
import imolecule.json_formatter as json
from imolecule import format_converter
file_path = os.path.normpath(os.path.dirname(__file__))
local_path = 'nbextensions/imolecule.min'
remote_path = (... | patrickfuller/imolecule | imolecule/notebook.py | Python | mit | 7,909 | [
"Open Babel"
] | dadae3a76b2b22a7db1dac5b7f9c74024fe19b9cf6c2b66b674db0867bb197af |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
import os
import json
import numpy as np
from monty.serialization import loadfn
from pymatgen import Structure
from pymatgen.electronic_structure.core import Spin, Orbital, OrbitalType
from p... | gVallverdu/pymatgen | pymatgen/electronic_structure/tests/test_dos.py | Python | mit | 30,971 | [
"pymatgen"
] | 13e977374744cbdbaf30b5c9274f18afa6f693a589b5cf460891a886fa6d4e09 |
from ase.atoms import Atoms
from ase.parallel import paropen
def read_xyz(fileobj, index=-1):
if isinstance(fileobj, str):
fileobj = open(fileobj)
if not isinstance(index, int) and not isinstance(index, slice):
raise TypeError('Index argument is neither slice nor integer!')
fileobj.seek(... | PHOTOX/fuase | ase/ase/io/xyz.py | Python | gpl-2.0 | 4,297 | [
"ASE"
] | 2cfa1bcdf5de964cc722677f1691a552c14d68f478c191f5b0ba83b1f755c6cd |
#!/usr/bin/env python
# Author: Pierre de Buyl http://pdebuyl.be/
# License: BSD 3-clause
"""Display the last frame of a dimer simulation, optionally with solvent
species B
"""
from __future__ import print_function, division
import argparse
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument('fi... | pdebuyl-lab/RMPCDMD | experiments/03-single-janus/view_last_simulation_frame.py | Python | bsd-3-clause | 2,998 | [
"Mayavi"
] | c89b4344a60c18c8c47c1d1e2bb03bc89ee1e381214f0581cdf9c83f2337f9da |
# Copyright (C) 2007 Alex Drummond <a.d.drummond@gmail.com>
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This p... | addrummond/gliki | gliki.py | Python | gpl-2.0 | 91,139 | [
"VisIt"
] | f81b6ff241195b6b07c4d4c5576f446df6c9f050a9735fbfc3a9b67900a5064d |
from zope.interface import implements
from twisted.plugin import IPlugin
from twisted.application import internet, service
from twisted.python import usage
from casino.factory import PokerFactory
from casino.services import PokerService
import casino.paths
class Options(usage.Options):
optParameters = [
... | gnmerritt/casino | twisted/plugins/casino_plugin.py | Python | mit | 1,373 | [
"CASINO"
] | 4bcee5f46be6a9264e4f7b33b21dc10f3411607d0ef59e927e735425d5b0c21b |
"""Table definitions and SQL ORM classes for the star schema -
see README.txt in same directory.
"""
import datetime
import getpass
import sys
from sqlalchemy import create_engine, text
from sqlalchemy import CHAR, VARCHAR, SMALLINT, NUMERIC, TEXT
from sqlalchemy import Boolean, DateTime, Integer
from sqlalchemy impo... | pbugni/pheme.longitudinal | pheme/longitudinal/tables.py | Python | bsd-3-clause | 30,216 | [
"VisIt"
] | e988b9c309a0eaaf79e13fa336d53d623ebbf2bab3c4fde5e2d68458a2418935 |
#!/usr/bin/env python
"""This is a patched :mod:`ase.calculators.vasp.Vasp` calculator
with the following features:
1. context manager to run in a specified directory and then return to the CWD.
2. calculations are run through the queue, not at the command line.
3. hook functions are enabled for pre and post processi... | jboes/jasp | jasp/jasp.py | Python | gpl-2.0 | 24,303 | [
"ASE",
"VASP"
] | fd53d347efaff8471f14ca8c40fc0782279ccb9e9e08a012a33723f444aabea5 |
# AvsP - an AviSynth editor
# Copyright 2007 Peter Jang
# http://www.avisynth.org/qwerpoi
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your opt... | AbsoluteDestiny/scenic | avisynth/pyavs.py | Python | mit | 21,055 | [
"VisIt"
] | f9771786acd882c569b41b4a84fd197265aa4900202156f1c2169efdd96c34ae |
#
# Copyright (c) 2016 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | src/scancode/utils.py | Python | apache-2.0 | 9,249 | [
"VisIt"
] | aef96f82b0c5596a38c6b38a6605e612024e4d072b5482e515bb373cd4caa55a |
"""Creates a sinogram for testing purposes"""
import numpy as np
def create_test_sino(A, N):
"""
Creates test sinogram.
"""
resar = np.zeros((A, N), dtype=float)
angles = np.linspace(0, np.pi, A, endpoint=False)
x = np.linspace(-N/2, N/2, N, endpoint=True)
dev = np.sqrt(N/2)
off = N/7
... | RI-imaging/radontea | tests/sinogram.py | Python | bsd-3-clause | 624 | [
"Gaussian"
] | 778434f4e452e2a97880067cc5f6a274bc82d6b47df4212570af540faa02ca6b |
from __future__ import print_function
import itertools
import numpy as np
import scipy.stats as st
import pandas as pd
import matplotlib.pyplot as plt
import matplotlib.patches as mpatches
import cartopy.crs as ccrs
import sys
from .. import mcplates
from pymc.utils import hpd
plt.style.use('./bpr.mplstyle')
from ..m... | ian-r-rose/mcplates | keweenawan/keweenawan_apw_path.py | Python | gpl-3.0 | 12,544 | [
"Gaussian"
] | 01903de0311f0c2300a0e4d3bf3a737479f08816f7096739832d032f7b5c5a40 |
#-*- coding:utf-8 -*-
"""
PyHdust *oifits* module: third-part module for reading/writing OIFITS files.
I made some modifications, but I keep the original README below.
This module is NOT related to the OIFITS Python module provided at
http://www.mrao.cam.ac.uk/research/OAS/oi_data/oifits.html
It is a (better) alterna... | dbednarski/pyhdust | pyhdust/oifits.py | Python | gpl-3.0 | 71,180 | [
"Amber"
] | 5c1fd5725b266a770904c810ef7315de7022c14538a9bf2b01fbfae46659c9c6 |
# coding: utf-8
import scipy.stats
import numpy as np
from math import ceil
from .. import img_as_float
from ..restoration._denoise_cy import _denoise_bilateral, _denoise_tv_bregman
from .._shared.utils import skimage_deprecation, warn
import pywt
import skimage.color as color
import numbers
def denoise_bilateral(ima... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/skimage/restoration/_denoise.py | Python | gpl-3.0 | 27,373 | [
"Gaussian"
] | 1967047ad50ea14802a8922923211a8ca367c297b08d7f6a8f63882cdf016140 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# king_phisher/client/graphs.py
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, th... | securestate/king-phisher | king_phisher/client/graphs.py | Python | bsd-3-clause | 36,836 | [
"VisIt"
] | e77d47af18ae03943c164d95957b58aa1a91d5b2fa401656616d7de19682615d |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# ------------------------------------------------------------------------
# File Name: GetWanIP.py
# Author: Zhao Yanbai
# Thu Oct 30 04:34:37 2014
# Description: none
# ------------------------------------------------------------------------
import htt... | acevest/monitor | GetWanIP.py | Python | gpl-2.0 | 3,171 | [
"VisIt"
] | 993b32f807f687619362c99ef1b5923074f1d46e86c568d3734d7fbb36b8d0e9 |
#!/usr/bin/python
import sys
import libvtkCommon as vtktools
sys.path.append('/share/apps/paraview/3.14/lib/paraview-3.14/')
data = vtktools.vtu('../mli_4.pvtu')
uvw = data.GetVectorField('Velocity')
u = uvw[:,0]
| jungla/ICOM-fluidity-toolbox | functions.py_bkup/extract_field.py | Python | gpl-2.0 | 215 | [
"ParaView"
] | b62e124ada60a5673d98ceb6604a6d71158301b1729b9683f2b87c0178bb81c7 |
"""
Acceptance tests for adding components in Studio.
"""
import ddt
from common.test.acceptance.fixtures.course import XBlockFixtureDesc
from common.test.acceptance.pages.studio.container import ContainerPage
from common.test.acceptance.pages.studio.settings_advanced import AdvancedSettingsPage
from common.test.accep... | ahmedaljazzar/edx-platform | common/test/acceptance/tests/studio/test_studio_components.py | Python | agpl-3.0 | 7,151 | [
"VisIt"
] | 805b30240914e58a24ab01f5af86c358450b18756caadfa548695e2600d784e6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# ommprotocol: A command line application to launch
# MD protocols with OpenMM
# By Jaime RGP <@jaimergp>
"""
ommprotocol.analyze
-------------------
Trajectory analysis routines
"""
import argparse
import os
import sys
import matplotlib.pyplot as plt
plt.i... | insilichem/ommprotocol | ommprotocol/analyze.py | Python | lgpl-3.0 | 6,543 | [
"MDTraj",
"OpenMM",
"VisIt"
] | a7bc3bbcb5a95d00f104a601a466028e4179dc2ef1465f42a2d6936e74aca5ba |
# -*- coding: utf-8 -*-
"""
@file
@brief Defines a sphinx extension to output the documentation in :epkg:`RST`.
It is inspired from `restbuilder
<https://github.com/sphinx-contrib/legacy>`_.
I replicate its license here:
::
Copyright (c) 2012-2013 by Freek Dijkstra <software@macfreek.nl>.
Some rights reserved... | sdpython/pyquickhelper | src/pyquickhelper/sphinxext/sphinx_rst_builder.py | Python | mit | 39,272 | [
"VisIt"
] | 85e7b9b3e632072f2154eedb494ee4d5d95e7065ea7b645051b869264ff51147 |
#!/usr/bin/env python
"""
Simple script for testing various SfePy functionality, examples not
covered by tests, and running the tests.
The script just runs the commands specified in its main() using the
`subprocess` module, captures the output and compares one or more key
words to the expected ones.
The output of fai... | BubuLK/sfepy | test_install.py | Python | bsd-3-clause | 9,683 | [
"VTK"
] | d4bfd117ed0a04c85aebd16e10376506e78048aea9a95996c918b63929f14a44 |
from openzwave.network import ZWaveNode
from Firefly import logging
from Firefly.components.zwave.zwave_device import ZwaveDevice
from Firefly.const import ACTION_OFF, ACTION_ON, ACTION_TOGGLE, DEVICE_TYPE_SWITCH, EVENT_ACTION_OFF, EVENT_ACTION_ON, STATE
from Firefly.helpers.metadata.metadata import metaSwitch
TITLE ... | Firefly-Automation/Firefly | Firefly/components/zwave/zwave_aeotec_dsc11_smart_strip.py | Python | apache-2.0 | 6,550 | [
"Firefly"
] | 4f398720d374a8d31c0ecad2f38421d66ef716d8be056c904d36461aeaf71c42 |
"""
===============================
Ordinary Least Squares with SGD
===============================
Simple Ordinary Least Squares example with stochastic
gradient descent, we draw the linear least
squares solution for a random set of points in the plane.
"""
print __doc__
import numpy as np
import pylab as pl
from s... | ominux/scikit-learn | examples/linear_model/plot_sgd_ols.py | Python | bsd-3-clause | 821 | [
"Gaussian"
] | 8258e847fc5e2da3dbc13e37cdf26b68521287663adab5986bc062c1912270dd |
# -*- coding: utf-8 -*-
import os
import sys
import imp
import ast
import contextlib
from mamba import nodetransformers
from mamba.infrastructure import is_python3
class ExampleCollector(object):
def __init__(self, paths):
self.paths = paths
self._node_transformer = nodetransformers.TransformToS... | jaimegildesagredo/expects_docs_mamba_formatter | mamba/example_collector.py | Python | mit | 2,371 | [
"VisIt"
] | ee37cc3bb624c5c057e37ef5667b7f04c04c6227aca6cc2d1e15a193d34aa82c |
#
# Copyright 2009 Mathieu Leocmach
#
# This file is part of Colloids.
#
# Colloids is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your opti... | MathieuLeocmach/colloids | python/colloids/clouds.py | Python | gpl-3.0 | 3,397 | [
"CRYSTAL"
] | e0c2df5b8be716c1ba9b20d8c226e8e0a6f244b7b809a446e772bb6c5ff29f81 |
# -*- coding: utf-8 -*-
#
# Copyright 2008 - 2013 Brian R. D'Urso
#
# This file is part of Python Instrument Control System, also known as Pythics.
#
# Pythics is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, e... | LunarLanding/Pythics | pythics/qwt.py | Python | gpl-3.0 | 42,205 | [
"Brian"
] | 2adc674ebc87453af94c02bf573dfb3b4d195f61c25435af71e79e06fb3cd0e0 |
class test:
def run(self):
print '\nThis is a demonstration/template of a PySCeS user contributed extension'
print '\nAdding a new extension module is a three step process:'
print '========================================================'
print '(1) create a directory which represents the name of\n and con... | asttra/pysces | pysces/contrib/demo/demotest.py | Python | bsd-3-clause | 684 | [
"PySCeS"
] | 6239884f31f3536bc182f8017820ccd8e18f42d329f17ef31bccc887c7f21835 |
#!/usr/bin/python
#
# Copyright 2015 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required b... | coxmediagroup/googleads-python-lib | examples/adwords/v201502/error_handling/handle_policy_violation_error.py | Python | apache-2.0 | 4,209 | [
"VisIt"
] | 3eb9913339e568c7e0cacfa2799bb3b18be3a5d352dc168b154e6bc21edb34be |
# Copyright 2018 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/sts/components/semilocal_linear_trend.py | Python | apache-2.0 | 19,985 | [
"Gaussian"
] | 44c87a4370183d59ec4a11fc61f90a291d3319f6e40c4710d9e9c0822faed136 |
"""Convolutional/Variational autoencoder, including demonstration of
training such a network on MNIST, CelebNet and the film, "Sita Sings The Blues"
using an image pipeline.
Copyright Parag K. Mital, January 2016
"""
import tensorflow as tf
import numpy as np
import os
from libs.dataset_utils import create_input_pipel... | alvaroing12/CADL | session-4/libs/vae.py | Python | apache-2.0 | 19,310 | [
"Gaussian"
] | 3345e0dc74cd1a735b206982e9ae1d73bf485e5b8683afc18b86fd2c987b696e |
# -*- coding: utf-8 -*-
#
# documentation build configuration file, created by
# sphinx-quickstart on Sat Sep 27 13:23:22 2008-2009.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# The contents of this file are pickled, so don't put values in the namespace
# that aren't pickleab... | jctanner/ansible | docs/docsite/sphinx_conf/core_conf.py | Python | gpl-3.0 | 11,221 | [
"Galaxy"
] | d1c492a22b23c6a58c26de5c5214ddb55e1afcb232962c884475b6029485968d |
# Copyright 2013 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | GirlsCodePy/girlscode-coursebuilder | modules/oauth2/oauth2.py | Python | gpl-3.0 | 6,937 | [
"VisIt"
] | cd462edf7ee3863e48806c0450f5e354a9c93058c5562a0136ef8f07159a53a9 |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | Jc2k/libcloud | libcloud/common/google.py | Python | apache-2.0 | 18,953 | [
"VisIt"
] | 4b1b7be7f2799bfa72b2ab27122302225599dabe187bd38c9355ed11f35b55a6 |
#!/usr/local/env python
# if necessary, edit preceding line to point to your Python
# or launch as "python Make.py ..."
# Purpose: manage LAMMPS packages, external libraries, and builds
# create a version of LAMMPS specific to an input script(s)
# Syntax: Make.py switch args ...
# Help: type Make.py or Make.p... | CFDEMproject/LAMMPS | src/Make.py | Python | gpl-2.0 | 27,623 | [
"LAMMPS"
] | 9cd43d1f85b6126106566a1df4189d8e484c50dc089f07cf48c98ef8038b3a39 |
# fMBT, free Model Based Testing tool
# Copyright (c) 2012, Intel Corporation.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms and conditions of the GNU Lesser General Public License,
# version 2.1, as published by the Free Software Foundation.
#
# This program is distribut... | sanyaade-mobiledev/fMBT | utils/eyenfinger.py | Python | lgpl-2.1 | 61,210 | [
"Gaussian"
] | 3d0fec40d229926eb688b1e3fc0750a255614914bdc59762a9bcd3ad7a10fe89 |
# -*- coding: utf-8 -*-
# ramaplot.AnalyticalDataset.py
#
# Copyright (C) 2015 Karl T Debiec
# All rights reserved.
#
# This software may be modified and distributed under the terms of the
# BSD license. See the LICENSE file for details.
"""
Manages analytical Ramachandran plot datasets.
.. todo:
- Use par... | KarlTDebiec/Ramaplot | AnalyticalDataset.py | Python | bsd-3-clause | 8,668 | [
"Amber"
] | 07439e92c80e49bfe3128cee44bad7db11b68619fc6d986318b269982fc0a547 |
#! /usr/bin/python
## * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
##* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
##=======================================================================
##Copyright (C) 2009-2010 Leonardo BAUTISTA GOMEZ
##This program is free softwar... | geodynamics/specfem3d_globe | utils/fault_tolerance_FTI_Leonardo_Bautista_Gomez/FTI_version_0.3_from_2011/src/conf.py | Python | gpl-3.0 | 3,022 | [
"VisIt"
] | 05c444876762c8ca09d45d41ba39988ce8256fdb7ba449c91b3f2d1f2d3e2405 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | poem/core/input_generator.py | Python | apache-2.0 | 28,000 | [
"Gaussian"
] | 806b020134218b525498bc90fac2686c88c6becbde8bbb4a48e42edf79dc7787 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/interaction/DihedralPotential.py | Python | gpl-3.0 | 2,701 | [
"ESPResSo"
] | 8008026ee23cd192fa976195849e038d1be7f8958cfe2aaea71bf0b88a5592a4 |
# $Id: get_deployments.py 2016-12-27 $
# Author: Coen Meerbeek <coen@buzzardlabs.com>
# Copyright: BuzzarLabs 2016
"""
This file retrieves deployments from an Octopus application
"""
import logging, json, requests, time, sys
import ConfigParser
import splunk.Intersplunk as isp
import octopus_common
# Parse octopus.c... | cmeerbeek/splunk-addon-octopus-deploy | TA-OctopusNT-Fwd/bin/get_deployments.py | Python | mit | 2,057 | [
"Octopus"
] | 3ffc4c7add64498c6a33dce101bb5c1133cba494fbc4f75ba7b7c6bae482fd2d |
# taken from http://www.piware.de/2011/01/creating-an-https-server-in-python/
# generate server.xml with the following command:
# openssl req -new -x509 -keyout server.pem -out server.pem -days 365 -nodes
# run as follows:
# python simple-https-server.py
# then in your browser, visit:
# https://localhost:4443
... | hn12404988/hast_web | examples/https_server.py | Python | gpl-3.0 | 600 | [
"VisIt"
] | 1f17a5d6ec26bed97cc14bb57ce92ba10129334a6b759a92a2a3bce23fbb5b55 |
__author__ = 'Brian Wylie'
__email__ = 'brian.wylie@kitware.com'
__version__ = '0.2.2'
| jzadeh/Aktaion | python/parserDev/brothon/__init__.py | Python | apache-2.0 | 87 | [
"Brian"
] | 185f5f14682978549bb40fb927477eba25d493825230a7928f876c749aeb3c28 |
import sys
import os
import collections
import logging
import operator
import json
from sys import exit
from os.path import splitext, join, basename, exists
from glob import glob
from seance.sample import Sample, MetadataSample
from seance.filetypes import MetadataReader, DataFileError, FastqFile, SffFile
from seance... | ajm/seance | seance/workflow.py | Python | gpl-3.0 | 22,769 | [
"BLAST"
] | c9be25070bd1adf963aa7c3b18c3dd104ced1265409674d83429be899ecd856b |
from builtins import range
import sys
sys.path.insert(1, "../../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.glm import H2OGeneralizedLinearEstimator
# simple test to set beta constraints tests with various number of predictors. Make sure the coefficient bounds are
# within the beta constraint... | h2oai/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_PUBDEV_7973_beta_constraints_gaussian.py | Python | apache-2.0 | 3,461 | [
"Gaussian"
] | 317ffab2060cc312837dcbc2e64e27a64f88fb074936b3dd1702bf59dfff10d8 |
"""
A general-purpose Simulation class for discrete events.
The Simulation object is the central object of a simulation. It
handles the simulation clock time and maintains communication between
the components of the simulation.
A simulation is structured as a directed graph of event-processing
nodes called EventPr... | jesuscript/topo-mpi | topo/base/simulation.py | Python | bsd-3-clause | 61,919 | [
"NEURON"
] | 3fe3ca301d26f6f260b830e199bba2bee7c7821edd3cd5293e5c74bf959c7292 |
# -*- Mode: Python; coding: utf-8; indent-tabs-mode: nil; tab-width: 4 -*-
### BEGIN LICENSE
# Copyright (C) 2014 Brian Douglass bhdouglass@gmail.com
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License version 3, as published
# by the Free Softwa... | bhdouglass/agui | agui/backends/pyside/extras/timeout.py | Python | gpl-3.0 | 1,072 | [
"Brian"
] | 57b48852a19f91e0a60ac2210c773683a26a182ff9b63ebcef1f8da88c7c924f |
""" PilotAgentsDB class is a front-end to the Pilot Agent Database.
This database keeps track of all the submitted grid pilot jobs.
It also registers the mapping of the DIRAC jobs to the pilot
agents.
Available methods are:
addPilotTQReference()
setPilotStatus()
deletePilot()
clearPilo... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/DB/PilotAgentsDB.py | Python | gpl-3.0 | 49,028 | [
"DIRAC"
] | fb06790b2e5da6d83018980509ff0f670cc8272e8f8624d646f3cf2c0e82a53b |
#!/usr/bin/env python
'''
sets up the dataset based on the measurement data
Argumets: relative path
'''
# Required modules for all notebooks
import scipy as sp
import numpy as np
import pandas as pd
import matplotlib
import matplotlib.pyplot as plt
import IPython
import sklearn
import graphviz
import sys
import os
#... | primercuervo/cognitive_radio_ml | python/setup_dataset.py | Python | mit | 18,915 | [
"Gaussian"
] | 21a57ef4d5a8011c00b191231e8fb82b30ca059447b1de00111f5db8617e3f71 |
# -*- coding: utf-8 -*-
from abc import abstractmethod, ABCMeta
import numpy as np
import cv2
import scipy.ndimage as snd
# from skimage.feature import structure_tensor, structure_tensor_eigvals, hog
from sldc import Logger, StandardOutputLogger, SilentLogger
__author__ = "Rubens Ulysse <urubens@uliege.be>"
__versio... | urubens/CellCounting | cell_counting/image_features.py | Python | mit | 10,968 | [
"Gaussian"
] | a63536c19ed0d96cc6fbef568e5d7ded28b5594ec3b52c1e685b5e5b8f106a2a |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2016, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Parser for GAMESS-UK output files"""
import re
import numpy
from . import logfileparser
from . import utils
class... | Schamnad/cclib | src/cclib/parser/gamessukparser.py | Python | bsd-3-clause | 28,721 | [
"GAMESS",
"Gaussian",
"cclib"
] | 94bea59a11ecdc338ec638e6fb7d78f6953069d9eabcceae795992405ba4a5c6 |
import cv2
import numpy as np
from matplotlib import pyplot as plt
img = cv2.imread("/home/pi/Desktop/document-scanner/images/please.jpg",0)
img = cv2.medianBlur(img,5)
ret,th1 = cv2.threshold(img,127,255,cv2.THRESH_BINARY)
th2 = cv2.adaptiveThreshold(img,255,cv2.ADAPTIVE_THRESH_MEAN_C,\
cv2.THRESH_BINARY... | agdal1125/sicp2 | document-scanner/example.py | Python | mit | 750 | [
"Gaussian"
] | 317764288f8dabe868e1ae7ff8e2eed8ddce1b56128e9f7783f2359922b04420 |
# -*- test-case-name: twisted.web.test.test_util -*-
# Copyright (c) Twisted Matrix Laboratories.
# See LICENSE for details.
"""
An assortment of web server-related utilities.
"""
__all__ = [
"redirectTo", "Redirect", "ChildRedirector", "ParentRedirect",
"DeferredResource", "htmlIndent", "FailureElement", "fo... | ecolitan/fatics | venv/lib/python2.7/site-packages/twisted/web/util.py | Python | agpl-3.0 | 12,852 | [
"VisIt"
] | a333e6f6364891c25d0b930e41264b05023b1bcb9dc8ede467b827f03c58e063 |
"""
PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
Copyright (C) 2004-2020 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
Brett G. Olivier (bgoli@users.sourceforge.net)
Triple-J Group for Molecular Cell Physiology
Stellenbosch University, South Africa.
Permission to us... | bgoli/pysces | pysces/PyscesInterfaces.py | Python | bsd-3-clause | 9,280 | [
"PySCeS"
] | 0c21d7004c43c5efe609f9f54d7efe9b709364f250fe962370b8a259b32f557e |
from tools.load import LoadMatrix
from sg import sg
lm=LoadMatrix()
traindat=lm.load_numbers('../data/fm_train_real.dat')
testdat=lm.load_numbers('../data/fm_test_real.dat')
trainlabel=lm.load_labels('../data/label_train_regression.dat')
parameter_list=[[traindat,testdat,trainlabel,10,2.1,1.2,1e-6],
[traindat,testda... | ratschlab/ASP | examples/undocumented/python_static/regression_krr.py | Python | gpl-2.0 | 852 | [
"Gaussian"
] | 57a7aacad4d2c0705528ad2d54aa609c9cba31088ac281a58e91652fd9443286 |
#__docformat__ = "restructuredtext en"
# ******NOTICE***************
# optimize.py module by Travis E. Oliphant
#
# You may copy and use this module as you see fit with no
# guarantee implied provided you keep this notice in all copies.
# *****END NOTICE************
# A collection of optimization algorithms. Version ... | poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/scipy/optimize/optimize.py | Python | apache-2.0 | 96,448 | [
"Gaussian"
] | 82fb8d9bc49d887832cb9b4a069e5adb9e863667583df43326228e44c5bf0f23 |
#!/usr/bin/python
"""
This module contains an OpenSoundControl implementation (in Pure Python), based
(somewhat) on the good old 'SimpleOSC' implementation by Daniel Holth & Clinton
McChesney.
This implementation is intended to still be 'simple' to the user, but much more
complete (with OSCServer & OSCClient classes) ... | fieldOfView/pyZOSC | OSC.py | Python | lgpl-3.0 | 89,915 | [
"VisIt"
] | e5b1f19ad7fac62b54c8f452b63d1e89556be66c6eb11eb5629e0cac966c289f |
#!/usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-utils-file-adler
# Author :
########################################################################
"""
Calculate md5 of the supplied file
"""
__RCSID__ = "$Id$"
import DIRAC
from DIRAC.Core... | andresailer/DIRAC | Interfaces/scripts/dirac-utils-file-md5.py | Python | gpl-3.0 | 1,184 | [
"DIRAC"
] | f9e2939812abce289d14f856c42996fd7b06173c0b47544aac50cff6a3259587 |
##
## Biskit, a toolkit for the manipulation of macromolecular structures
## Copyright (C) 2004-2012 Raik Gruenberg & Johan Leckner
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either v... | ostrokach/biskit | Biskit/AmberCrdEntropist.py | Python | gpl-3.0 | 6,335 | [
"Amber"
] | 71f1b127d21dcba71e4f87d59b7d2497f79bd8bb2cb3fd8b800e47d2aa2498b9 |
# Author: Samuel Genheden samuel.genheden@gmail.com
"""
Program to analyse the radius and area per lipid of a liposome
Examples:
md_liposome.py -s ref.gro -f sim.xtc --inner "name PO4 and resid 8161:9107" --outer "name PO4 and resid 9108:10688"
"""
import numpy as np
import MDAnalysis as md
import MDAnalysis.lib.d... | SGenheden/Scripts | Md/md_liposome.py | Python | mit | 4,014 | [
"MDAnalysis"
] | 8e8ef0ba34d0e0e4870e0ecf4ab7e26903916a0f7c6d740b3b33a2de30388471 |
#!/usr/local/bin/env python
# ==============================================================================
# MODULE DOCSTRING
# ==============================================================================
"""
ParallelTemperingSampler
========================
Derived multi-thermodynamic state multistate class wit... | choderalab/openmmtools | openmmtools/multistate/paralleltempering.py | Python | mit | 12,141 | [
"OpenMM"
] | 74f36ea5b16236abbe6f5acd6b79d0ad4f06666413d8f59919f10a436ae46ea1 |
# -*- coding: utf-8 -*-
from __future__ import division
"""
Created on Fri Jul 20 15:55:52 2018
@author: hou
"""
import numpy as np
import os
import cv2
import math
import skimage
import random
import argparse
from skimage import io
from PIL import Image,ImageDraw,ImageFont
parser = argparse.ArgumentParser()
parser.a... | ucloud/uai-sdk | examples/tensorflow/train/crnn_chinese/code/gen_data/gen_pic.py | Python | apache-2.0 | 2,733 | [
"Gaussian"
] | 0d6de73fa4d6572d3c68370be4fe2718fc093ebd7190c401cf683b9f21c5aff6 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may n... | kwhitehall/climate | ocw/dataset_processor.py | Python | apache-2.0 | 32,596 | [
"NetCDF"
] | 5cecf8812cbff518aa8b13cfa33385066ebf50e37c3e8f85ad1a29715ad96521 |
#!/usr/bin/env python
"""
Converts plumed cv output to evb cv output style
(keep only the first 2 columns; multiply the first by 1000 (ps to fs) and make an int
"""
from __future__ import print_function
import os
import sys
import argparse
from md_utils.md_common import list_to_file, InvalidDataError, warning, create_... | team-mayes/md_utils | md_utils/proc_plumed_cv.py | Python | bsd-3-clause | 5,937 | [
"LAMMPS"
] | 78fe8c198f8dbb8ee30e5321cf790109a24095f4efdd01cf75c89b7a75808f97 |
# -*- coding: utf-8 -*-
# Copyright 2007-2011 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | pburdet/hyperspy | hyperspy/io_plugins/netcdf.py | Python | gpl-3.0 | 6,617 | [
"NetCDF"
] | b6c6bc227d669ad8550266e4faa17646158ad8ad1dca80da01e161597c5e23a8 |
"""
The image module supports basic image loading, rescaling and display
operations.
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
import os
import warnings
import math
import numpy as np
from numpy import ma
from matplotlib import rcPar... | yavalvas/yav_com | build/matplotlib/lib/matplotlib/image.py | Python | mit | 49,589 | [
"Gaussian"
] | ad7ce5f8bd0b8eb1bf634420f82226fb5da61f1917ceb9cb64e5e8597560ec4a |
"""
OUTPUT:
Bacteriocins
1. bacterion ID
2. organism
3. bacteriocin start
4. bacteriocin end
5. bacteriocin strand
6. regionType
Annotated Genes
1. bacteriocin ID
2. organism
3. bacteriocin start
4. bacteriocin end
5. bacteriocin strand
6. annotated gene organism
7. annotated gene locus
8. annotated ... | idoerg/BOA | src/genome/bacteriocin.py | Python | gpl-3.0 | 25,065 | [
"BLAST"
] | 652bef07dd3c06ced130656221fdb203f80afa88c13f740e6c99d0f8bbd6cbcd |
#Fits an emission ine with a Gaussian and returns the amplitude, standard deviation, and continuum line
#Usage: run FitEmission.py 'a6' 4861 to fit the lines at rest wavelengths 6563 (Ha) for the a6 mask.
#Typing run FitEmission.py 'a6' 'HaNII' will fit all three lines around Ha simulaaneously
import nump... | brianlorenz/COSMOS_IMACS_Redshifts | PlotCodes/PlotEmission.py | Python | mit | 40,053 | [
"Galaxy",
"Gaussian"
] | af9fd005eb30b6af95bc44a6e7e6e23529481f3adbc3776217a7c66d34e9e920 |
# -*- coding: utf-8 -*-
"""
Created on Thu Jul 24 19:49:39 2014
@author: brian
"""
import socket, time, re
class LifeBoard:
"""
Play the game of life
"""
def __init__(self, board):
"""
board - 2d array of the board where '*' is an alive cell and ' ' is a dead
cell
"""
self.board = b... | cylussec/gameoflife | life.py | Python | gpl-2.0 | 1,914 | [
"Brian"
] | 7de30cb08617b95b120af312d1b4767cc7070194d1130ebfe4477043b200c233 |
# Copyright (C) 2004-2008 Paul Cochrane
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distribut... | paultcochrane/pyvisi | examples/FlindersFaultLinesExample.py | Python | gpl-2.0 | 3,835 | [
"VTK"
] | ef2ba909fb308fa0b303d3dc9da25d52b552bffc795750792d63ec9560b8a8ad |
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
import random
def getLambdaModel():
print("Read data")
prostate = h2o.import_file(path=pyunit_utils.locate("smalldata/logreg/prostate.csv"))
myX = ["AGE","RACE","DPROS","DCAPS","PSA","VOL","GLEASON"]
myY = "CAPSULE"
famil... | pchmieli/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_NOFEATURE_getLambdaModel_mediumGLM.py | Python | apache-2.0 | 1,395 | [
"Gaussian"
] | 22fa3a0fadabeb44645aad2b0d97ec70bd35927588c09350aa6e6eaf1e5271cb |
from rdkit import RDConfig
import unittest
from rdkit.DataManip.Metric import rdMetricMatrixCalc as rdmmc
import numpy
import random
from rdkit import DataStructs
def feq(v1,v2,tol2=1e-4):
return abs(v1-v2)<=tol2
class TestCase(unittest.TestCase):
def setUp(self) :
pass
def test0DistsArray(self)... | rdkit/rdkit-orig | Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py | Python | bsd-3-clause | 4,444 | [
"RDKit"
] | af8c359b61f652f64dd28437af168b7851c7f569394e2fa154e10f64556ec7a8 |
#!/usr/bin/python
import os
import shutil
from testutil import test_result
import pynbody as pyn
import numpy as np
import matplotlib.pyplot as plt
import pynbody.plot.sph as p_sph
#Parameters for the test
testdir='sedov'
files = ["data/sedov.std", "data/sedov.param"]
exe = "./gasoline"
testname = "Sedov Blast"
def t... | ibackus/compare-changa-builds | tests/sedov/sedovblast.py | Python | mit | 3,176 | [
"BLAST"
] | aa6cc2cf7461cf56183f6791c05bfbe18eab8a2b62cc2f919e37d0ef39f17699 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2005 Donald N. Allingham
# Copyright (C) 2008 Stefan Siegel
# Copyright (C) 2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Genera... | Forage/Gramps | gramps/plugins/rel/rel_de.py | Python | gpl-2.0 | 11,352 | [
"Brian"
] | f03353af4df7f6927b5652d3de9c5b414e70715871fd54edc65b8284965cf553 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import numpy as np
import re
from math import sin, cos, pi, sqrt
import string
import warnings
from pymatgen.electronic_structure.core import Magmom
from pymatgen.util.string import transformation_to_string
... | dongsenfo/pymatgen | pymatgen/core/operations.py | Python | mit | 20,784 | [
"CRYSTAL",
"pymatgen"
] | f5ca52693897cca556690ca858744ac76ff9af65e156aec307ed2d905935047e |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | drpngx/tensorflow | tensorflow/contrib/autograph/pyct/transformer.py | Python | apache-2.0 | 11,455 | [
"VisIt"
] | 603c75bf18b60dcd65dd05487d064daee9203b613d8b809e8db17428dffa8465 |
#!/usr/bin/env python
"""
module used to compare gene clusters between forg to stat and stat to forg
transitions.
"""
import os
import sys
import re
import argparse
import itertools
import string
import random
import networkx as nx
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
from matplotlib... | oxpeter/small_fry | compare_clusters.py | Python | gpl-2.0 | 21,145 | [
"Mayavi"
] | 22f750caa2fa415361f8acd027e15031b2b9e138a85819b6569f83742ada741f |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
=====================
Classifier comparison
=====================
A comparison of a several classifiers in scikit-learn on synthetic datasets.
The point of this example is to illustrate the nature of decision boundaries
of different classifiers.
This should be taken with ... | chenyyx/scikit-learn-doc-zh | examples/en/classification/plot_classifier_comparison.py | Python | gpl-3.0 | 5,236 | [
"Gaussian"
] | b7862b7f475239d61f8b40d061e32a2263b86ce0b711946adcdd4f5ea21dd03f |
#-------------------------------------------------------------------------------
#
# Define classes for (uni/multi)-variate kernel density estimation.
#
# Currently, only Gaussian kernels are implemented.
#
# Written by: Robert Kern
#
# Date: 2004-08-09
#
# Modified: 2005-02-10 by Robert Kern.
# Contr... | svviz/svviz | src/svviz/kde.py | Python | mit | 3,288 | [
"Gaussian"
] | f415b1356bbdf1be3d42ccf831e2072cbda97b69ac803f068552bd2eb728a7d9 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
=============================================================
Compare the effect of different scalers on data with outliers
=============================================================
Feature 0 (median income in a block) and feature 5 (number of households) of
the `... | chrsrds/scikit-learn | examples/preprocessing/plot_all_scaling.py | Python | bsd-3-clause | 13,981 | [
"Gaussian"
] | c937870992a620ffeedccf81b3e1fe63c507893b9a45892a0742db7f1559e87d |
# TO-DO: to be moved to tests directory
import cmd
import sys
import os.path
from DIRAC.DataManagementSystem.Client.CmdDirCompletion.AbstractFileSystem import UnixLikeFileSystem
from DIRAC.DataManagementSystem.Client.CmdDirCompletion.DirectoryCompletion import DirectoryCompletion
class DirCompletion(cmd.Cmd):
... | DIRACGrid/DIRAC | src/DIRAC/DataManagementSystem/Client/test/new_dir_completion.py | Python | gpl-3.0 | 1,214 | [
"DIRAC"
] | 61a4a0c9c35274771c6900c231939aff10d361a89c39196eadef0acce78a3e48 |
# polling_location/controllers.py
# Brought to you by We Vote. Be good.
# -*- coding: UTF-8 -*-
from .models import PollingLocationManager
from config.base import get_environment_variable
from django.contrib import messages
import glob
import json
import requests
import wevote_functions.admin
from wevote_functions.fun... | wevote/WeVoteServer | polling_location/controllers.py | Python | mit | 15,992 | [
"VisIt"
] | 69c56c65ee94e1b5e9cb23cf02a5a5883138bd7cfa9f50f5e413febb76525ebb |
# Developed by Redjumpman for Redbot.
# Inspired by Spriter's work on a modded economy.
# Creates 1 json file, 1 log file per 10mb, and requires tabulate.
# STD Library
import asyncio
import logging
import logging.handlers
import os
import random
import time
from copy import deepcopy
# Discord imports
i... | OldManMarsh/Jumper-Cogs | casino/casino.py | Python | mit | 106,141 | [
"CASINO"
] | 8316d52fc454d80127cc2b61ae9bf33f32e0c4c2d290e85b8bbdebb6a2f2628e |
import os
from datetime import datetime
from django.test import SimpleTestCase
from django.utils import html, safestring
from django.utils.encoding import force_text
from django.utils.functional import lazystr
class TestUtilsHtml(SimpleTestCase):
def check_output(self, function, value, output=None):
"""... | twz915/django | tests/utils_tests/test_html.py | Python | bsd-3-clause | 9,021 | [
"ADF"
] | da1acf631435283644fe958727b1445bf9fb90b51e0915477dbf2a650d5e2b21 |
# vim: set tabstop=4 shiftwidth=4 textwidth=79 cc=72,79:
"""
fuzzy: Fuzzy Set and Fuzzy Logic functions.
Original Author: Owain Jones [github.com/erinaceous] [contact@odj.me]
"""
from __future__ import print_function
import fuzzython.utils
import fuzzython.norms.norms
import fuzzython.fsets.fuzzy_set
import fu... | erinaceous/python-fire | fire/fuzzy.py | Python | mit | 5,923 | [
"Gaussian"
] | 79f44dc04b5e67c5416c8b6d3ed7b6b045f075fda437ec190912e53697d7430d |
""" For reporting messages to security log service
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import syslog
from DIRAC import gLogger, gConfig
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC.Core.Utilities import Time
from DIRAC.Core.Ut... | yujikato/DIRAC | src/DIRAC/FrameworkSystem/Client/SecurityLogClient.py | Python | gpl-3.0 | 2,234 | [
"DIRAC"
] | d5c006985685476b85aed272136c0f33963c095daf7f1a8cb67dceb86eb8f19b |
class Neuron:
"""Abstract class for a neuron in a neural network."""
def __init__(self):
self.result = 0
def calculate_result(self):
pass
| hesslink111/neuralnetworknibbles | domain/neuron.py | Python | mit | 168 | [
"NEURON"
] | 93adbf848d6c72e24bb1a1d78021581da231159adfe761b67af0db22eff42bf9 |
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