text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
""" A mock of the DataManager, used for testing purposes
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
# pylint: disable=protected-access, missing-docstring, invalid-name, line-too-long
from mock import MagicMock
from DIRAC import S_OK
dm_mock = Mag... | yujikato/DIRAC | src/DIRAC/DataManagementSystem/Client/test/mock_DM.py | Python | gpl-3.0 | 1,432 | [
"DIRAC"
] | a18e56712ca34aa96f1dea3cc2ff0074fe1cbe752ffa1564b183227c32974ca9 |
from rdkit import Chem
from rdkit import RDConfig
import time, sys, gzip
import pickle
from rdkit.RDLogger import logger
logger = logger()
logger.info('reading smarts')
qs = []
smas = []
for line in file(RDConfig.RDDataDir + '/SmartsLib/RLewis_smarts.txt', 'r').readlines():
if line[0] == '#':
continue
line = ... | bp-kelley/rdkit | Data/SmartsLib/tests/bench2.py | Python | bsd-3-clause | 1,271 | [
"RDKit"
] | 5b7d79b54e6beb848824cc652d6b79ae47794df2b3e2850feef3a289e3e72851 |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | mkuron/espresso | testsuite/python/rotational-diffusion-aniso.py | Python | gpl-3.0 | 14,255 | [
"ESPResSo"
] | 2fe72aae6c9e82b66db6d98c5100ae99325e54e559e4d9c582e497ea0667c493 |
# Copyright 2014 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | CSCI1200Course/csci1200OnlineCourse | modules/notifications/cron.py | Python | apache-2.0 | 5,927 | [
"VisIt"
] | e6cdeb4a2f57fa2801b2e7a963e011057ba022f54aae60014d377a8e86c9356e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
PURPOSE: Create a new post
AUTHOR: Dylan Gregersen
DATE: Wed Oct 29 11:03:40 2014
"""
# ########################################################################### #
# import modules
from __future__ import print_function, division, unicode_literals
import os
import io
i... | bkimmig/personal_webpage_pelican | output/blog/create_post.py | Python | gpl-2.0 | 943 | [
"Brian"
] | 4b1d8f05bd14f100802a904367440f02f90ed07843fe8dff4a4c6a324cb7a502 |
# Copyright (C) 2012 C. R. Leavett-Brown
# You may distribute under the terms of either the GNU General Public
# License or the Apache v2 License, as specified in the README file.
import WhoZwho as Z
from UserLogin import GoLogout
import logging
logger = logging.getLogger('WhoZwho.update')
import os.path
from django... | ColinLB/WhoZwho | DirectoryAddName.py | Python | gpl-3.0 | 4,209 | [
"VisIt"
] | 93f40839be17532bc8865a8bb3a09183402fa9828c0e4544fb00ff9950d576ca |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | resources/pyinstaller/hook-openlp.py | Python | gpl-2.0 | 2,553 | [
"Brian"
] | b58c4e57fdfafa1652aef0af17ef5abc4629490fb9e1330a770ea70973adac97 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham, A. Roitman
# Copyright (C) 2007-2009 B. Malengier
# Copyright (C) 2008 Lukasz Rymarczyk
# Copyright (C) 2008 Raphael Ackermann
# Copyright (C) 2008 Brian G. Matherly
#
# This program is free soft... | rdp/legado | src/cli/argparser.py | Python | gpl-2.0 | 14,684 | [
"Brian"
] | c9f2b0c71d4b465ebec95acbe651d7f494485706d3cd986c2e9a936fa5f64bb5 |
# RPi Meteor Station
# Copyright (C) 2016 Dario Zubovic, Denis Vida
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | CroatianMeteorNetwork/RMS | RMS/ConfigReader.py | Python | gpl-3.0 | 47,048 | [
"Gaussian"
] | ddc4517ae0bd688f198202e5fed69c02c914ba1d9af36c8af59e880d8c92b172 |
import pathlib
import pytest
from util import full
from loprop.core import penalty_function, AU2ANG, pairs
from loprop.dalton import MolFragDalton
from .common import LoPropTestCase
from . import h2o_dyn_data as ref
from . import h2o_data
thisdir = pathlib.Path(__file__).parent
case = "h2o_dyn"
tmpdir = thisdir / c... | vahtras/loprop | tests/test_h2o_dyn.py | Python | gpl-3.0 | 7,700 | [
"Dalton"
] | bfb10ef80389add911e37379cd1c84d3c8c6d3332884258ef0ed90c83bb8f1d3 |
#
# mainTab
#
tab = self.notebook.mainTab
tab.settings['Program'] = 'experiment'
tab.settings['Output file name'] = 'constant.exp'
#
# Change the first scenario tab to single crystal
#
tab = self.notebook
tab.switchScenario(0,scenarioType='Single crystal')
#
tab = self.notebook.mainTab
tab.settings['Program'] = 'experi... | JohnKendrick/PDielec | Examples/Experiment/constant/script.py | Python | mit | 1,463 | [
"CRYSTAL"
] | c69286ef38fc05e719a071b9383c6cbebd80e299b9e5840c200d26e1d7672b94 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# climactic documentation build configuration file, created by
# sphinx-quickstart on Thu Jun 18 00:14:22 2015.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# ... | b33j0r/climactic | docs/source/conf.py | Python | gpl-2.0 | 6,476 | [
"Brian"
] | 7ee975bcc5ebc0d4f96d94ab926d18fb5134c85fe817d98775e18c90ceedf969 |
#!/usr/bin/env python
#
# Copyright 2007 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | Suwmlee/XX-Net | gae_proxy/server/lib/google/appengine/tools/sdk_update_checker.py | Python | bsd-2-clause | 14,750 | [
"VisIt"
] | 737b17dda9c790e983dba88c5ee0a22646953d8f1bfd04905dd136b38bc6af02 |
#!/usr/bin/python
import os, sys # low level handling, such as command line stuff
import string # string methods available
import re # regular expressions
import getopt # comand line argument handling
from low import * # custom functions, written by myself
import anydbm # index databases (file ... | lotharwissler/bioinformatics | python/kegg/kegg-parser.py | Python | mit | 3,139 | [
"Biopython"
] | 09146523cc609890eef2c2b1e4ba8c544fd55f9c9ce71cf208c69dee4c4a076a |
# -*- coding: utf-8 -*-
from statsmodels.compat.pandas import Appender, Substitution, to_numpy
from collections.abc import Iterable
import datetime as dt
from types import SimpleNamespace
import warnings
import numpy as np
import pandas as pd
from scipy.stats import gaussian_kde, norm
from statsmodels.tsa.base.predi... | jseabold/statsmodels | statsmodels/tsa/ar_model.py | Python | bsd-3-clause | 64,241 | [
"Gaussian"
] | 4d0a5b3f72b500dd6fc10e9f6db44968eb38b70a08552c271eb64f2f0f5918e7 |
#!/usr/bin/env python
# Author: Samuel Ponc\'e
# Date: 30/04/2013 -- 11/09/2014
# Version: 1.3
# Script to compute the ZPR
import sys
import os
import copy
try:
from rf_mods import system
except ImportError:
import warnings
warnings.warn("The system module is missing!")
raise
from rf_mods import zpm
import mul... | jmbeuken/abinit | scripts/deprecated/temperature_para.py | Python | gpl-3.0 | 22,400 | [
"ABINIT"
] | c75eda13caf61f77f0900f1a050ec5e23c0cafae75b5c16b515056de078e972b |
"""
This module is for writing files that summarize the results of the pipeline.
"""
"""
Copyright 2010 Jarl Haggerty
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses... | jarl-haggerty/profelis | src/main/jython/profelis/report.py | Python | apache-2.0 | 5,991 | [
"BLAST"
] | f54a559fb6c7d638ff7eddd5b1270df7cf00d06c266224df640a78050d4b8bd2 |
from __future__ import division, absolute_import, print_function
import numpy as np
from numpy.matrixlib.defmatrix import matrix, asmatrix
# need * as we're copying the numpy namespace (FIXME: this makes little sense)
from numpy import *
__version__ = np.__version__
__all__ = np.__all__[:] # copy numpy namespace
__a... | jorisvandenbossche/numpy | numpy/matlib.py | Python | bsd-3-clause | 9,757 | [
"Gaussian"
] | 0a09c0fdd3589f114ca9fc327288a63201b38c80890b5bba5d1a703c4c8fbd72 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | CDSherrill/psi4 | psi4/driver/gaussian_n.py | Python | lgpl-3.0 | 7,056 | [
"Gaussian",
"Psi4"
] | 60e4b68e6a427a196cbcbbdf3cae0d9ea3e3bc2dd6aeee64eba6b56c54691b4f |
import requests
def find_a_movie(form):
if form.is_valid():
search_key = form.cleaned_data.get('search', '')
choice = form.cleaned_data.get('choice', '')
# The requests package will generate a request with the required data:
# The URL looks like :
# https://www.omdbapi.com/?t=Firefly... | rish4bhn/movieclue | movieclue/services.py | Python | mit | 2,756 | [
"Firefly"
] | 622b20d7b0b0c1dfc2f42a268f9efa200b53d42773d8e9bb7a5cc94f90205c58 |
# -*- coding: utf-8 -*-
""" Sahana Eden Incident Reporting Model
@copyright: 2009-2015 (c) Sahana Software Foundation
@license: MIT
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Sof... | anurag-ks/eden | modules/s3db/irs.py | Python | mit | 56,604 | [
"VisIt"
] | 3e7075e1ec93cc9985a196f6910dff41dbe8324ce2b05056e5f09ec9f6c8bed3 |
'''Various extensions to distributions
* skew normal and skew t distribution by Azzalini, A. & Capitanio, A.
* Gram-Charlier expansion distribution (using 4 moments),
* distributions based on non-linear transformation
- Transf_gen
- ExpTransf_gen, LogTransf_gen
- TransfTwo_gen
(defines as examples: square, n... | wesm/statsmodels | scikits/statsmodels/sandbox/distributions/extras.py | Python | bsd-3-clause | 42,340 | [
"Gaussian"
] | c0cad9ba97dac3ca167add44300458d03d96d5241cd4ecbb86ff233ac924a4a0 |
#!/bin/env python3
import numpy as np
import os, sys, warnings
import ase
import copy
from time import time
from pyneb_structureformat import supercell
import warnings
def deprecate(fun):
warnings.warn("This function ({} > {}) will be removed in future updates!".format(fun.__module__,fun.__name__),Depr... | andrew031191/pyneb | pyneb_parser_castep.py | Python | lgpl-3.0 | 33,759 | [
"ASE",
"CASTEP",
"CRYSTAL"
] | 5b7226f9575645f822bddd0ce6355f849d46b3572e23e4e1982ec504deda9ed5 |
# -*-python-*-
#
# Copyright (C) 1999-2006 The ViewCVS Group. All Rights Reserved.
#
# By using this file, you agree to the terms and conditions set forth in
# the LICENSE.html file which can be found at the top level of the ViewVC
# distribution or at http://viewvc.org/license-1.html.
#
# For more information, visit h... | foresthz/fusion5.1 | www/scm/viewvc/lib/viewvc.py | Python | gpl-2.0 | 127,915 | [
"VisIt"
] | 96318994243912764b7e909f02caa007467fddc67b69a939de91ea8948e5c246 |
# coding=utf-8
import logging
import etcd
import gevent
from octopus import constant
from octopus import err
from octopus.proto import config_proto
from octopus.util.stoppable import Stoppable
log = logging.getLogger(constant.LOGGER_NAME)
class OctpConfig(Stoppable):
def __init__(self, etcd_options, service_nam... | ideascf/octopus | config/octp_config.py | Python | mit | 2,721 | [
"Octopus"
] | 86efd50bc332cbcd6e89ca4e00c72eefb1d9c8f9ccda9d1e1f1b77747efbc3d9 |
from sympy.core.basic import S, C
from sympy.core.function import Function
from sympy.core.evalf import get_integer_part, PrecisionExhausted
###############################################################################
######################### FLOOR and CEILING FUNCTIONS #########################
#################... | mattpap/sympy-polys | sympy/functions/elementary/integers.py | Python | bsd-3-clause | 4,952 | [
"VisIt"
] | 242fc2012f6ce61b976148376b33a54c392c4ba1964b2e45433c6b00ff404f0a |
#!/usr/bin/python -tt
# -*- coding: utf-8 -*-
# vim: set et ts=2 sw=2 sts=2:
#
# Usage:
# python mk_cred.py < copy_paste_credential.txt
# python mk_cred.py update
# python mk_cred.py new | init
# python mk_cred.py update_key CONSUMER_KEY
# python mk_cred.py bash_export
#
# actions:
#
# stdin parser
# copy_p... | opensource-expert/ovh-tools | mk_cred.py | Python | gpl-3.0 | 4,696 | [
"VisIt"
] | 2642c879a96416ad24ec475b7dfaf3f9c46870de6679a3c63c7e376231031485 |
import os
from netCDF4 import Dataset
from pyproj import Proj
import numpy
import rasterio
from trefoil.netcdf.crs import PROJ4_GEOGRAPHIC
from trefoil.netcdf.conversion import netcdf_to_raster
# TODO: need 3d test file
# TODO: need better test fixtures to fabricate data
def test_netcdf_to_raster(tmpdir):
outfil... | consbio/clover | trefoil/netcdf/tests/test_conversion.py | Python | bsd-3-clause | 1,065 | [
"NetCDF"
] | 6441376f1fbff47795cf036f1d431dfa0a7791613bda24465cfce95b77df8ac8 |
"""
Global average annual temperature plot
======================================
Produces a time-series plot of North American temperature forecasts for 2
different emission scenarios. Constraining data to a limited spatial area also
features in this example.
The data used comes from the HadGEM2-AO model simulations... | davidnmurray/iris | docs/iris/example_code/Meteorology/COP_1d_plot.py | Python | gpl-3.0 | 4,323 | [
"NetCDF"
] | 85787f6fbe0ad18a8db63f06893fecda8e656b75f7e8313e6019d8ad5f1753f3 |
#!/usr/bin/env python
import sys
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
from matplotlib import ticker, gridspec
import util as u
eV2wn = u.energy_conversion['wn'] / u.energy_conversion['eV']
#
# Lorentzian gamma : FWHM
# Gaussian sigma : Std Dev
#
def lorentzian(SpecRange, fr... | dpadula85/VAISD | stable/Spec.py | Python | gpl-3.0 | 5,744 | [
"Gaussian"
] | 2dbb13c359d7f90bf7ab590489e5a47692b231038a3d532a3eb38b5ac6866b23 |
"""module for simple .fits image tasks (rotation, clipping out sections, making .pngs etc.)
(c) 2007-2014 Matt Hilton
U{http://astlib.sourceforge.net}
Some routines in this module will fail if, e.g., asked to clip a section from a
.fits image at a position not found within the image (as determined using the
WCS). Wh... | boada/astlib_dev | astLib/astImages.py | Python | lgpl-2.1 | 50,443 | [
"Gaussian"
] | 58a990412f6053110ac73fd6b6ce55e543750f2ef573d78c3beaa58d37874419 |
import io
import os
import re
gems = [
'ruby',
'garnet',
'topaz',
'amber',
'heliodor',
'peridot',
'green_sapphire',
'phosphophyllite',
'aquamarine',
'sapphire',
'tanzanite',
'amethyst',
'agate',
'morganite',
'onyx',
'opal',
'carnelian',
'spinel',
... | SilentChaos512/SilentGems | scripts/update_texture_names.py | Python | lgpl-3.0 | 1,476 | [
"Amber"
] | 5383d6a4f5f71d9171157bcce77ada176533df5722561bd4f7a202260cb2b325 |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | mkuron/espresso | samples/object_in_fluid/motivation.py | Python | gpl-3.0 | 5,900 | [
"ESPResSo",
"VTK"
] | 2a0868ec6b772d513b2c68d9536aeef98fa344551645ef35a25728a31e59e7e1 |
"""Random variable generators.
integers
--------
uniform within range
sequences
---------
pick random element
pick random sample
generate random permutation
distributions on the real line:
------------------------------
uniform
... | MalloyPower/parsing-python | front-end/testsuite-python-lib/Python-2.3/Lib/random.py | Python | mit | 27,634 | [
"Gaussian"
] | 0305d48dcdfc63d6522668ecce2471ee33e45a579ff53204f01a65d1ece5229f |
#!/usr/bin/env python3
import os
import sys
import random
import time
from random import seed, randint
import argparse
import platform
from datetime import datetime
import imp
from time import sleep
# from run_parameter import *
parser = argparse.ArgumentParser(
description="This is a python3 script to\
automa... | luwei0917/awsemmd_script | run_mpi.py | Python | mit | 5,257 | [
"LAMMPS"
] | bd419bf3680a0afd86179ec5739dcee34a9405882516b3a5ec4684cce6ae803f |
"""
C helper for Miasm:
* raw C to Miasm expression
* Miasm expression to raw C
* Miasm expression to C type
"""
from pycparser import c_parser, c_ast
from miasm2.expression.expression_reduce import ExprReducer
from miasm2.expression.expression import ExprInt, ExprId, ExprOp, ExprMem
from miasm2.core.ctypesmngr imp... | chubbymaggie/miasm | miasm2/core/objc.py | Python | gpl-2.0 | 52,826 | [
"VisIt"
] | 55c475c1f324b7a76d090daa32e25173322ecbbc896847efe73ab9673e9b06e1 |
"""
Commonly used fit functions (and some utility functions) meant to be
used with :py:meth:`scipy.optimize.curve_fit`.
"""
import numpy as np
# Fit functions
# -------------
def gaussian(t, A, B, t0, sigma):
r"""
Computes the Gaussian profile
.. math::
f(t; A, B, t_0, \sigma) = A \exp \le... | mivade/mvdlib | mvdlib/fit_functions.py | Python | gpl-3.0 | 3,073 | [
"Gaussian"
] | 88de80d2c1f21ec3de38cf8761fc91136539abc5d4315ef81a788f53ac62dfd1 |
#!/usr/bin/env python
import unittest
import validate_header
class UtilTests(unittest.TestCase):
def test_create_field_dict(self):
test_line = '@SQ\tSN:T:G\tSL:2\n'
self.assertEqual(validate_header.create_field_dict(test_line), { 'SN': 'T:G', 'SL': '2' })
def test_create_field_set(self):
... | ernfrid/oneoffs | ccdg_synch/test_validate_header.py | Python | mit | 4,331 | [
"BWA"
] | cdd353641374ec8f2e3424dbef0108bdd945c8df0d985e7641eff72ef182716d |
#pylint: disable=missing-docstring
#################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment #
# #
# (c) 2010... | yipenggao/moose | python/chigger/annotations/ImageAnnotation.py | Python | lgpl-2.1 | 4,654 | [
"MOOSE",
"VTK"
] | f31f1c3ec138936c64ae8e5c4c08c648a00dcc12083b0bd63b64a0ea263044bc |
#!usr/bin/python
# Copyright 2016, Rohan Dandage <rraadd_8@hotmail.com,rohan@igib.in>
# This program is distributed under General Public License v. 3.
import sys
from os.path import splitext, exists, basename
import logging
from multiprocessing import Pool
import pandas as pd
import subprocess
import logging
loggin... | rraadd88/dms2dfe | dms2dfe/ana0_fastq2sbam.py | Python | gpl-3.0 | 2,822 | [
"Bowtie"
] | 48be8dfb3c9d48ee2058d5b74e83b19d79d3e9bd5ab9aba451fe4ed420003c5c |
###############################################################################
##
## Copyright (C) 2014-2015, New York University.
## Copyright (C) 2011-2014, NYU-Poly.
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.org
##
## This file is part of VisTrails.
##
## ... | hjanime/VisTrails | scripts/gen_vtk_examples/convert_to_vt.py | Python | bsd-3-clause | 4,382 | [
"VTK"
] | 03d843ac4e2bcabb0fbad6949d4bc8c2c00c018a162ac55e6aed05a64d7009e4 |
from __future__ import unicode_literals
import logging
import time
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.contrib.auth.models import User
from django.contrib.sites.models import Site
from django.core.exceptions import MultipleObjectsReturned, ObjectDoesN... | 1tush/reviewboard | reviewboard/reviews/views.py | Python | mit | 62,005 | [
"VisIt"
] | d22797d4d6370e8bfc4adb7ea2508a11cb0bdd4160d690cf843969a9332f277a |
# -*- coding: utf-8 -*-
import pandas as pd
import time
import string
import numpy as np
import datetime
import math
# define my stopwords list
sw_oj = open("D:\\Manuscript 5\\1 Original Data (download on 2016.10.26)\\stopwords from google history and MySQL.txt", 'r')
sw_oj = list(sw_oj)
MySW = ''
for i ... | albertwang21/LoanSelect | NeuralBased/1 FeatureExtraction.py | Python | mit | 24,792 | [
"Jaguar"
] | 19ae2527ba00fc07cd7aa21a7fab9c0849b20348108e6cbe680436ad476df48d |
# Copyright (c) 2010-12, Pierre-Antoine Delsart, Kurtis Geerlings, Joey Huston,
# Brian Martin, and Christopher Vermilion
#
#----------------------------------------------------------------------
# This file is part of SpartyJet.
#
# SpartyJet is free software; you can redistribute it and/or modify
# ... | mickypaganini/SSI2016-jet-clustering | spartyjet-4.0.2_mac/python/spartyjet/gui/JetRetrieverLive.py | Python | mit | 2,906 | [
"Brian"
] | 9b8738dff72e508428ec9786fe0265de49cf4953a0c2dda5068225b3fb85a9ea |
#This file is the GUI layout for the Contact Tab and Bug Submission page.
from PyQt4 import QtCore, QtGui
try:
_fromUtf8 = QtCore.QString.fromUtf8
except AttributeError:
def _fromUtf8(s):
return s
try:
_encoding = QtGui.QApplication.UnicodeUTF8
def _translate(context, text, disambig):
... | CPSC491FileMaker/project | About.py | Python | gpl-2.0 | 5,072 | [
"VisIt"
] | 80a56a7f402492bb3bd650ebc8f495d7a0161e40923c9c2e112536f51797ec8f |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Licensed to Cloudera, Inc. under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. Cloudera, Inc. licenses this file
# to you under the Apache License, Version 2.0 ... | 2013Commons/HUE-SHARK | apps/useradmin/src/useradmin/tests.py | Python | apache-2.0 | 39,307 | [
"MOE"
] | e30e39cc3447f144aac6778f55a5cf40495f381c9d8e73fd8c02dc56c7f90cc7 |
'''NetworkManager mock template
This creates the expected methods and properties of the main
org.freedesktop.NetworkManager object, but no devices. You can specify any
property such as 'NetworkingEnabled', or 'WirelessEnabled' etc. in
"parameters".
'''
# This program is free software; you can redistribute it and/or m... | semafor/python-dbusmock | dbusmock/templates/networkmanager.py | Python | lgpl-3.0 | 11,716 | [
"VisIt"
] | 8c2ff77d7352a9b13c68617d4659d0e4cdf25fa9ef3172dc568509227e7ed846 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkTreeReader(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.vtk... | chrisidefix/devide | modules/vtk_basic/vtkTreeReader.py | Python | bsd-3-clause | 468 | [
"VTK"
] | 3352a9ae100ca90ad83c75bae6ee189c08eb075b5bad6a6d37fb0dbade8388a9 |
__author__ = 'Brian Nguyen'
def greeting(msg):
print("We would like to say: " + msg) | b-nguyen/cs3240-labdemo | helper.py | Python | mit | 90 | [
"Brian"
] | 73c0f6efe73bf52da1019024ff993953389375ee3820a43a19b098f9f0194915 |
# -*- coding: utf-8 -*-
'''
Observations: Open access archive app for Las Cumbres Observatory Global Telescope Network
Copyright (C) 2014-2015 LCOGT
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, ... | LCOGT/observations | app/images/views.py | Python | gpl-3.0 | 60,945 | [
"Firefly",
"Galaxy",
"Gaussian"
] | 67338285dbf84350baf613f9c8d966381c0af14b61b5338f1e48dbde302b688d |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
Use BLOCK program as the DMRG solver and parallel DMRGSCF on different nodes.
BLOCK is invoked through system call. Different settings.MPIPREFIX needs to
be specified for PBS and SLURM systems.
'''
from pyscf import gto
from pyscf import scf
... | gkc1000/pyscf | examples/mcscf/50-dmrgscf_with_block.py | Python | apache-2.0 | 956 | [
"PySCF"
] | 2aac11a840d04a962f8a6f9759bcad04f9227e76023d282758e746eae71bd437 |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/controls/editors/embeddedmany2oneeditor.py | Python | gpl-2.0 | 5,328 | [
"VisIt"
] | f53b25cb2524051c027a4811a4766667e6e8fc2c4354dbbd2e2e7c4192c2b452 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | aosagie/spark | python/pyspark/mllib/clustering.py | Python | apache-2.0 | 37,048 | [
"Gaussian"
] | 4d57a06b8bf8811df4497c0caa52d127f0df24239492e3c32c28fccfa2e39dfc |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# jobqueue - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of ... | heromod/migrid | mig/server/jobqueue.py | Python | gpl-2.0 | 5,844 | [
"Brian"
] | f5759302bd1b4987d0dfe67931ef75d620c5ccb903f1d8dced1912eb82d5c436 |
#! /usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-admin-bdii-cluster
# Author : Adria Casajus
########################################################################
"""
Check info on BDII for Cluster
"""
__RCSID__ = "$Id$"
from DIRAC.Core... | avedaee/DIRAC | Core/scripts/dirac-admin-bdii-cluster.py | Python | gpl-3.0 | 1,471 | [
"DIRAC"
] | 86653b836f807763060b859656f702796fa95592176e7de831676d7de39b75e5 |
#!/usr/bin/env python
'''
Description: OWTF imap agent daemon plugin, to emulate user clicks via email
'''
import re
import subprocess
# TODO: Play with below and see if it is better or not
# http://daringfireball.net/2009/11/liberal_regex_for_matching_urls
# url_regex = re.compile(r'\b(([\w-]+://?|www[.])[^\s()<>]+(... | DarKnight--/owtf | agents/imap/payloads/link_clicker.py | Python | bsd-3-clause | 791 | [
"VisIt"
] | deb62b2c08caf2d660bf71a43a2d9cba4b73d452196fd891843e291d0649842e |
# #
# Copyright 2009-2018 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (... | bartoldeman/easybuild-framework | easybuild/tools/filetools.py | Python | gpl-2.0 | 62,468 | [
"NetCDF"
] | bf32370ac163d330aed602d13b874ef7a28891574d4baded601656801c544124 |
"""
DIRAC.RequestManagementSystem.Agent package
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
| yujikato/DIRAC | src/DIRAC/RequestManagementSystem/Agent/__init__.py | Python | gpl-3.0 | 164 | [
"DIRAC"
] | ec79539fe3df13d026645fc986a7c61b21d359254579140d1ffa241a57d5cb24 |
'''
Created on 4 Sep 2015
@author: maxz
'''
import unittest
import numpy as np
import GPy
class BGPLVMTest(unittest.TestCase):
def setUp(self):
np.random.seed(12345)
X, W = np.random.normal(0,1,(100,6)), np.random.normal(0,1,(6,13))
Y = X.dot(W) + np.random.normal(0, .1, (X.shape[0], W.s... | befelix/GPy | GPy/testing/minibatch_tests.py | Python | bsd-3-clause | 13,260 | [
"Gaussian"
] | 8d8d1f3434ba397d51f7c0bd48cef93d3a6810eb13128b2a4f10f8f1d1972858 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | fweik/espresso | samples/visualization_cellsystem.py | Python | gpl-3.0 | 2,500 | [
"ESPResSo"
] | 301e0607feab7f50916cd58a85e84b5c6429031eabd14945c7634de4e0f3f704 |
from __future__ import annotations
import logging
import math
import os
import xml.dom.minidom
from xia2.Decorators.DecoratorFactory import DecoratorFactory
from xia2.Driver.DriverFactory import DriverFactory
from xia2.Handlers.Phil import PhilIndex
# this was rather complicated - now simpler!
from xia2.lib.Symmetry... | xia2/xia2 | src/xia2/Wrappers/CCP4/Pointless.py | Python | bsd-3-clause | 23,965 | [
"CRYSTAL"
] | 838b98444993ca56435ce77d33cc6a218a7eff55e793f40390b4675ec26f79cd |
from pygments.lexer import RegexLexer, bygroups, include
from pygments.token import *
class BlogLexer(RegexLexer):
name = 'BLOG'
aliases = ['blog']
filenames = ['*.blog', '*.dblog']
operators = ['\\-\\>', ':', '\\+', '\\-', '\\*', '/', '\\[', ']',
'\\{', '}', '!', '\\<', '\\>', '\\<=', '\\>=', '==', ... | BayesianLogic/blog | tools/blog_py_lexer/blog/lexer.py | Python | bsd-3-clause | 3,373 | [
"Gaussian"
] | 3be2766fa44a2c858eda6d343a76e2435d04f69e183264595fd65485e03a4808 |
import sys
import time
import numpy as np
import multiprocessing
class BayesianRegress:
def __init__(self, lambda_=0.1, sigma_=2.5, coef_=None, intercept_=None,
fitsigma=True, fitlambda=False):
"""Initialize a Bayesian regressor.
_lambda: L2 constrains of weights
_sigma: ... | huangyh09/brie | brie/version1/model_brie.py | Python | apache-2.0 | 15,651 | [
"Gaussian"
] | 1fd02fdd0af4ab19befeb54fbdadc71adb96adc094b065bac7dd20fab0939e95 |
import six
from parsimonious.nodes import NodeVisitor
from collections import OrderedDict
import operator
class WhereVisitor(NodeVisitor):
def __init__(self, parser):
self.db = parser.db
self.columns = parser.columns
self.from_tables = parser.from_tables
def collection_to_table(sel... | sapetnioc/doqapy | doqapy/backends/sqlite/ast_to_sqlite.py | Python | mit | 7,055 | [
"VisIt"
] | 5e6ce76b94cb9a679a97a68830bf779bbfc32eb87a07869b225afe0e152d1216 |
#!/usr/bin/env python
import time
import fiona
import multiprocessing
from rasterio.plot import show
import math
import os
import pandas
import click
#import matlibplot.pyplot as plt
import numpy as np
import numpy.ma as ma
import rasterio
from rasterio.plot import show, show_hist
from projections.rasterset import Ra... | ricardog/raster-project | user-scripts/adrid/projections-02-cs.py | Python | apache-2.0 | 10,128 | [
"ADF"
] | c4e831ba7167368c08f5c2fb76501b486beb024fe410d66d38f48fa43520627f |
import matplotlib.pyplot as plt
import argparse
import collections
import matplotlib.mlab as mlab
import numpy as np
from scipy.optimize import curve_fit
from scipy.stats import linregress
import math
def main(args_dict):
def gauss_function(x, a, x0, sigma):
return a*np.exp(-(x-x0)**2/(2*sigma**2))
def wavelength... | chuck-knox/compton-scattering-experiment | compton/plot_ascii_data.py | Python | apache-2.0 | 15,546 | [
"Gaussian"
] | eadf4ba384335f7c56912ac70f8a8387ae5f46f2c5fb4a004caa389a79aaa98d |
#!/usr/bin/env python3
# @package create_timeline
# \author Andy Aschwanden, University of Alaska Fairbanks, USA
# \brief Script creates a timeline for enviornmental forcing.
# \details Script creates a timeline file that can be used with
# the -time_file option and -*_given_file to control the applicaton
# of forcing... | pism/pism | util/create_timeline.py | Python | gpl-3.0 | 5,436 | [
"NetCDF"
] | 725cc77a9743863d4f1f6a16761c25ab6b21b2241cf14f6cd9ce8a85aa96fb45 |
"""
Histogram-related functions
"""
from __future__ import division, absolute_import, print_function
import operator
import warnings
import numpy as np
from numpy.compat.py3k import basestring
__all__ = ['histogram', 'histogramdd', 'histogram_bin_edges']
# range is a keyword argument to many functions, so save the ... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/numpy/lib/histograms.py | Python | gpl-3.0 | 36,413 | [
"Gaussian"
] | 9c1e10c4e2f7d70ffc1c872514bb5ae41cc3e9b58aafc42f0413575f70459e8a |
from .. import Provider as PersonProvider
class Provider(PersonProvider):
# conforming to http://nl.wikipedia.org/wiki/Achternaam#Naamswijziging and
# http://en.wikipedia.org/wiki/Dutch_name#Dutch_naming_law_.28surnames.29
# by adding a "-" between the two last names when someone is married
formats = ... | joke2k/faker | faker/providers/person/nl_NL/__init__.py | Python | mit | 32,776 | [
"Amber",
"Brian",
"FLEUR"
] | 054ba4b04f4d9c40c58315c689d5b3c2f9a529de136678672bf240ef5924a4aa |
def parse_inner_window(win_path):
'''Return inner_win = (inner_window_min, inner_window_max) given in
the Wannier90 input file and win_path.
'''
lines = None
with open(win_path, 'r') as fp:
lines = fp.readlines()
inner_win = [None, None]
for line in lines:
lsp = line.strip()... | tflovorn/tmd | tmd/wannier/parseWin.py | Python | mit | 654 | [
"Wannier90"
] | 793cfa22da63be07979bf447515a9e4b27eef22619744e07bf82ae76ba3e6090 |
"""
Implementation of Harwell-Boeing read/write.
At the moment not the full Harwell-Boeing format is supported. Supported
features are:
- assembled, non-symmetric, real matrices
- integer for pointer/indices
- exponential format for float values, and int format
"""
from __future__ import division, print_... | lhilt/scipy | scipy/io/harwell_boeing/hb.py | Python | bsd-3-clause | 18,472 | [
"exciting"
] | 12278794b787d74cbf24733202d7088cf21ea88875c417068f7a18b376f38a52 |
#!/usr/bin/env python
# coding=utf-8
"""
Unit tests for the Python port of SMAZ
Copyright (c) 2014 Max Smith except for portions of Moby Dick which are in the public domain
Public domain
"""
from unittest import TestCase
import bz2
import zlib
import datetime
import itertools
import random
import sys
import os
from s... | CordySmith/PySmaz | tests/test_smaz.py | Python | bsd-3-clause | 37,731 | [
"VisIt"
] | 0deb74b8fb7a1bd07ba70ac48719aa57705d0422b2532bc2351d3ca7077564ca |
"""gro.py: Used for loading Gromacs GRO files.
"""
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2015 Stanford University and the Authors
#
# Authors: Robert McGi... | swails/mdtraj | mdtraj/formats/gro.py | Python | lgpl-2.1 | 19,924 | [
"Gromacs",
"MDTraj",
"OpenMM"
] | c10d18b243353a4a8c8d3be33074ee5860bffa266725ab0baa65729f29bf1978 |
#!/usr/bin/env python
#
# Electrum - lightweight Bitcoin client
# Copyright (C) 2011 thomasv@gitorious
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | AdamISZ/joinmarket_core | joinmarket_core/old_mnemonic.py | Python | gpl-3.0 | 17,925 | [
"CRYSTAL",
"VisIt"
] | 551763fa8402ff301d340c8980140e13b4b6bd9001593ead03624198a9f7c308 |
# -*- coding: UTF-8 -*-
# @author: xuyong
# @file: 104_network-programming_2_server.py
# @time: 2017/9/8 上午9:59
# @desc: 服务端
import socket # 导入 socket 模块
s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) # 创建 socket 对象
host = ''; # host = socket.gethostname() # 获取本地主机名
port = 18110; # 设置端口
s.bind((host, p... | xiaoyong0312/Python-dev | Python2.x/Python2.x-1-high/104_network-programming_2_server.py | Python | mit | 627 | [
"VisIt"
] | d268ac7c7c111dd8edaa46807c2f64702a22d66e7bc30f0796a5cdd52e602fe5 |
#!/usr/bin/env python
#
# $File: recRate.py $
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (bpeng@mdanderson.org)
#
# This program is free software: you can redistribute it... | BoPeng/simuPOP | docs/recRate.py | Python | gpl-2.0 | 1,656 | [
"VisIt"
] | 23aa47e37ee90cfc208c98bbe8546b783076dbaf56c6b7699d0b96e8c11e1039 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
... | haad/ansible-modules-core | files/acl.py | Python | gpl-3.0 | 10,359 | [
"Brian"
] | a6e1327535a3364a8fff33e9ce024010a914f53ea39c5c5e6310336ae5b906fd |
#!/usr/bin/env python
# generate peak set complete files, binding region files, and report files!
import sys
import time
import optparse
import general
import numpy
import pickle
import pdb
import metrn
import modencode
import os
print "Command:", " ".join(sys.argv)
print "Timestamp:", time.asctime(time.localtime())
... | claraya/meTRN | python/mapPeaks.py | Python | mit | 15,001 | [
"BWA",
"Bowtie"
] | 4f32c0ac70be2aca3cab489155197c07f4fafb1c9058ff947d5530486b96e79a |
#
# Copyright (C) 2003 Rational Discovery LLC
# All rights are reserved.
#
from __future__ import print_function
# from elementtree.ElementTree import ElementTree, Element, SubElement
import time
from xml.etree.ElementTree import ElementTree, Element, SubElement
def _ConvertModelPerformance(perf, modelPerf):
if len... | rvianello/rdkit | rdkit/ML/ModelPackage/PackageUtils.py | Python | bsd-3-clause | 4,647 | [
"RDKit"
] | 0639bc9a6350fc65a63198e2480940c3e36c71eba62e82f23d91ca31569e0ecb |
#
# Copyright (C) 2013,2014 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | mgusenbauer/espresso | tools/blockfile.py | Python | gpl-3.0 | 6,178 | [
"ESPResSo"
] | a10b2079e1402bf25258afe31bbc3f58965450b5699e95704c8e9ef57bc4fde0 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under th... | kain88-de/mdanalysis | package/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py | Python | gpl-2.0 | 5,948 | [
"MDAnalysis"
] | 7c6777108fe979b9073d9abb31248ccdb039f6cffea5872fe72d443f4dce849e |
"""
Plots the 2D velocity magnitude from a IBAMR simulation at saved time-steps
using the visualization software VisIt.
"""
from snake.ibamr.simulation import IBAMRSimulation
simulation = IBAMRSimulation()
body_name = 'flyingSnake2dAoA35ds004filledInside' # file name (no extension)
simulation.plot_field_contours_v... | barbagroup/cuIBM | external/snake-0.3/examples/ibamr/plotVelocityMagnitude.py | Python | mit | 602 | [
"VisIt"
] | eaa8bbe3b3fd0b51652acf8d7c57c0e0c26f83a3e0c92000a624593ad322c885 |
from collections import defaultdict
from itertools import count
from operator import attrgetter
from os import path as op
import matplotlib.pyplot as plt
import pandas as pd
import numpy as np
from tqdm import tqdm
import pickle
from ..exceptions import PipelineException
try:
import cv2
except ImportError:
pr... | fabiansinz/pipeline | python/pipeline/utils/eye_tracking.py | Python | lgpl-3.0 | 41,016 | [
"Gaussian"
] | 66f029ca889b8dcbc4cd46eadee15ad1d1574dc3a2edd90ad3b5f0f73eb6b631 |
import arcpy, common, loaders
from modeling import GaussianOptimizer
REPORT_TEMPLATE = u'''Interaction Gaussian modelling analysis
Input interactions: %s
Interaction strength field: %s
Interaction length field (d): %s
Output decayed strength field: %s
Interactions found: %i
Using Gaussian model in form G * e^(-d^2 /... | simberaj/interactions | gaussian_distance_decay.py | Python | mit | 2,492 | [
"Gaussian"
] | 2f96bbfcc9f81adaeff5f04e84a76cee559240342793174126bebf834e555cda |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2007-2012 Brian G. Matherly
# Copyright (C) 2009 Gary Burton
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2010 Nick Hall
# Copyright (C) 2013-2014 Paul Franklin
#
# This program is free software; you can redistribute it and/or modif... | ennoborg/gramps | gramps/plugins/textreport/tagreport.py | Python | gpl-2.0 | 34,915 | [
"Brian"
] | a4a96712a8398e50d0223613540c49f1ef53155d63093913df17d90db11ae04b |
'''
Conversion of basis sets to Molcas format
'''
from .. import lut, manip, printing, misc, sort
def write_molcas(basis):
'''Converts a basis set to Molcas format
'''
basis = manip.make_general(basis, False, True)
basis = sort.sort_basis(basis, False)
s = ''
for z, data in basis['elements... | MOLSSI-BSE/basis_set_exchange | basis_set_exchange/writers/molcas.py | Python | bsd-3-clause | 3,456 | [
"MOLCAS"
] | d5a8f1be7d05f1bde46f341295287e0aaadc4f3c53c1ea6686f297827bb9392b |
#pylint: disable=missing-docstring
####################################################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment ... | Chuban/moose | python/MooseDocs/extensions/devel.py | Python | lgpl-2.1 | 12,878 | [
"MOOSE"
] | 15b9f63eb60b8f91fb5516e82bc7f2548d9e7230edeb3887625c4076b2defa3f |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | vericred_client/models/state_network_size_request.py | Python | apache-2.0 | 12,954 | [
"VisIt"
] | 00907a9c02d2e18d538b00f99791864ee34ae518af702a4e7bb34e6fc3684cf9 |
#!/usr/bin/env python
import glob, os, os.path, shutil, socket, struct, sys, time, tarfile
import numpy, psr_utils, presto, sifting, sigproc
# Calling convention:
#
# PALFA_presto_search.py fil_file working_dir
#
# fil_file is the filterbank file name
# working_dir is the scratch directory where the work should be... | pscholz/presto | bin/PALFA_presto_search.py | Python | gpl-2.0 | 27,457 | [
"Gaussian"
] | 6228f7e25e418e22f974bd13fe1adbfbdcedb5475ae4aa5f2a435a79ce2833ae |
# (c) 2012-2018, Ansible by Red Hat
#
# This file is part of Ansible Galaxy
#
# Ansible Galaxy is free software: you can redistribute it and/or modify
# it under the terms of the Apache License as published by
# the Apache Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
... | chouseknecht/galaxy | galaxy/accounts/views.py | Python | apache-2.0 | 706 | [
"Galaxy"
] | 4dbd5cd82636ec8b20ab3a7d691a6a9dbebddd6e4a6a85589b736fe4609c848c |
# -*- coding: utf-8 -*-
#
#
# File to preform some standard tasks on a neuroConstruct project
#
# Author: Padraig Gleeson
#
# This file has been developed as part of the neuroConstruct project
# This work has been funded by the Medical Research Council and the
# Wellcome Trust
#
#
import sys
im... | pgleeson/TestArea | pythonNeuroML/nCUtils/ncutils.py | Python | gpl-2.0 | 58,658 | [
"Brian",
"MOOSE",
"NEURON"
] | 2bdc2125546b32eafbdadc1153987357306f8380fc73d514b0fa817fab052bd5 |
""" Tornado-based HTTPs WMSAdministrator service.
"""
from DIRAC import gLogger
from DIRAC.Core.Tornado.Server.TornadoService import TornadoService
from DIRAC.WorkloadManagementSystem.Service.WMSAdministratorHandler import WMSAdministratorHandlerMixin
sLog = gLogger.getSubLogger(__name__)
class TornadoWMSAdministra... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/Service/TornadoWMSAdministratorHandler.py | Python | gpl-3.0 | 393 | [
"DIRAC"
] | b20af1dc1b2e9bf296f0be24957bd36e13d53ff28efbdd429e9b212d51ce4ae5 |
# -*- coding: utf-8 -*-
"""
This file contains methods for hyperbolic saturation fitting, these methods
are imported by class FitLogic.
Qudi is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the... | childresslab/MicrocavityExp1 | logic/fitmethods/hyperbolicsaturationmethods.py | Python | gpl-3.0 | 5,401 | [
"Gaussian"
] | e03f2c3fc094c4c2f82cfb5e5648c2431dcc9f4452f3f8a12de819ddd448cf45 |
# timetable.py ---
#
# Filename: timetable.py
# Description:
# Author: Subhasis Ray
# Maintainer:
# Created: Wed Jun 19 19:37:00 2013 (+0530)
# Version:
# Last-Updated: Thu Oct 02
# By: Upi
# Update #: ?
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
#
#
#
# Change log:
#
#
#
#
# This program i... | BhallaLab/moose-examples | snippets/timetable.py | Python | gpl-2.0 | 5,633 | [
"MOOSE"
] | cbe8810dc06a2f8f9218a546767ba8fe2a3072a9a08bdbcc5725c313dc809b5a |
# -*- coding: utf-8 -*-
# @Author: J. Alejandro Cardona Valdes
"""
Proyecto 3 : Chequeo del Programa
=================================
Aquí está una lista completa de todo lo que
debera comprobar:
1. Nombres y símbolos:
Todos los identificadores deben ser definidos antes de ser usados. Esto incluye variables,
... | Alecardv/College-projects | MiniPascal/mpascheck.py | Python | gpl-3.0 | 12,881 | [
"VisIt"
] | 5efc037c104b909dfb34d4842cae95101195e0a59ce6c569ad4b7a446304fdfa |
#!/usr/bin/env python
# encoding: utf-8
"""
vcf2phylip.py
Created by Nick Crawford on 2011-11-18.
Copyright (c) 2011
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, ... | ngcrawford/pypgen | scripts/vcf2phylip.py | Python | bsd-3-clause | 10,087 | [
"pysam"
] | eec13108ec08238cfcd257ac2ea5640dcc66804f7775aae6b9fb6e4600d3fafb |
#!/usr/bin/python2.7
# -*- coding: utf-8; mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vim: fileencoding=utf-8 tabstop=4 expandtab shiftwidth=4
# Module : generate_gcoos_nc_timeseries_atm.py
# Author : Felimon Gayanilo (felimon.gayanilo@gcoos.org)
# Last update : 23 May 2016
# ... | GCOOS/csv2nc | bin/generate_gcoos_nc_timeseries_atm.py | Python | gpl-3.0 | 14,769 | [
"NetCDF"
] | 758bd2b71db65cc542fcab5635bdad1ff6e3f879271bc393948c578765225a4e |
from datetime import date, time, timedelta
from decimal import Decimal
import itertools
from django.utils import timezone
from six.moves import xrange
from .models import Person
def get_fixtures(n=None):
"""
Returns `n` dictionaries of `Person` objects.
If `n` is not specified it defaults to 6.
"... | aykut/django-bulk-update | tests/fixtures.py | Python | mit | 4,567 | [
"CRYSTAL"
] | 4f56f5b5c5c62b9af2fa169fb6db8e27a6de87c88945d6bac2c1edd177554ab2 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
from pymatgen.analysis.defects.core import Vacancy
from pymatgen.transformations.defect_transformations import DefectTransformation
from pymatgen.util.testing import PymatgenTest
class DefectTransformationTe... | materialsproject/pymatgen | pymatgen/transformations/tests/test_defect_transformations.py | Python | mit | 1,254 | [
"pymatgen"
] | c7c99d88fd9883b4da8ef3a431fafdd53a9487c2b984c74109dddbf053068360 |
#!/usr/bin/env python
"""
Export a history to an archive file using attribute files.
usage: %prog history_attrs dataset_attrs job_attrs out_file
-G, --gzip: gzip archive file
"""
from galaxy import eggs
from galaxy.util.json import *
import optparse, sys, os, tempfile, tarfile
def get_dataset_filename( name, ext... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/tools/imp_exp/export_history.py | Python | gpl-3.0 | 3,497 | [
"Galaxy"
] | f1ac98684b42a918a95c6f29b90aef124e8a992a6c7c4bc352c84e120a9c1072 |
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