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# -*- coding: utf-8 -*-
# Copyright (c) 2010-2012 OpenStack Foundation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... | mjwtom/swift | test/unit/proxy/test_server.py | Python | apache-2.0 | 417,379 | [
"MOOSE"
] | 3a15249ae2a674e4697f8fac8126d4d809cf61bb921b56197376fcbc528b26b7 |
"""This module implements the calculation of the electron-phonon couplings."""
__all__ = ["ElectronPhononCoupling"]
import numpy as np
import numpy.fft as fft
from gpaw.mpi import serial_comm
class ElectronPhononCoupling:
"""..."""
def __init__(self, atoms, gd, kd, calc=None, dmatrix=None, dtype=float):
... | qsnake/gpaw | gpaw/dfpt/electronphononcoupling.py | Python | gpl-3.0 | 7,888 | [
"GPAW"
] | d0df6010f24125d0adff3056d8304a430e8f31d2cd761b7edc63b65fb7712c16 |
# Orca
#
# Copyright (C) 2013 Igalia, S.L.
#
# Author: Joanmarie Diggs <jdiggs@igalia.com>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at yo... | h4ck3rm1k3/orca-sonar | src/orca/scripts/toolkits/GAIL/script.py | Python | lgpl-2.1 | 3,813 | [
"ORCA"
] | 952a62611f29368ecead24e297cf0a54c5fdbd8bd2ae5cd67d9bfb520cdf4f05 |
# (c) 2012-2014, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | camradal/ansible | lib/ansible/playbook/conditional.py | Python | gpl-3.0 | 9,210 | [
"VisIt"
] | b9c1c00ca08ab2eca7f373cc7e172e43c030f12046982bddbe99a4d971f960d5 |
"""User-friendly public interface to polynomial functions. """
from sympy import (
S, Basic, I, Integer, Add, Mul, sympify, ask,
)
from sympy.core.decorators import (
_sympifyit,
)
from sympy.polys.polyclasses import (
GFP, DMP, SDP, ANP, DMF,
)
from sympy.polys.polyutils import (
dict_from_basic,
... | mattpap/sympy-polys | sympy/polys/polytools.py | Python | bsd-3-clause | 74,482 | [
"Gaussian"
] | a7aac4a4ac8715a02a27f796e8cdb7ab534eda0a5f3bcb8c688adcf540d24ff7 |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | skosukhin/spack | var/spack/repos/builtin/packages/cp2k/package.py | Python | lgpl-2.1 | 10,507 | [
"CP2K",
"CRYSTAL",
"Wannier90"
] | 34d4d5c07e33b970b471168193a7c8860c1e529d4fabc8cbc4a84efb1f04b5a3 |
# -*- coding: utf-8 -*-
# http://nbviewer.jupyter.org/github/lmarti/evolutionary-computation-course/blob/master/AEC.03%20-%20Solving%20the%20TSP%20with%20GAs.ipynb
import os
import matplotlib.pyplot as plt
import matplotlib.colors as colors
import matplotlib.cm as cmx
import matplotlib
import random
import operator
i... | NicovincX2/Python-3.5 | Algorithmique/Optimisation/Algorithme d'optimisation/Métaheuristique/Algorithme génétique/Problème du voyageur de commerce/tsp1.py | Python | gpl-3.0 | 7,845 | [
"VisIt"
] | a56a0009db3c99d08cdb0516fd269e02bbda506e9711f45642e03fa4a4f97aab |
# Copyright (C) 2016
# Jakub Krajniak (jkrajniak at gmail.com)
#
# This file is part of ChemLab
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (... | cgchemlab/chemlab | src/tests/test_topology_reader.py | Python | gpl-3.0 | 2,938 | [
"ESPResSo"
] | 4a02748728b3fe5d93f1e90867870a8b5f71b0261b9e1979061d2907e026fdb3 |
#
# NAME
# problem_set2_solutions.py
#
# DESCRIPTION
# Open, view, and analyze action potentials recorded during a behavioral
# task. In Problem Set 2, you will write create and test your own code to
# create tuning curves.
#
#Helper code to import some functions we will use
import numpy as np
import ma... | ngr/sandbox | neuraldata/problem_set2/problem_set2.py | Python | mit | 6,193 | [
"NEURON"
] | 6e17da63594399ecb906f6c8385f2d8a55ae3e572438e0906531a4153ad202cd |
#################
#
# This file is part of
# ToBaCCo - Topologically-Based Crystal Constructor
#
# Copyright 2017 Yamil J. Colon <yamilcolon2015@u.northwestern.edu>
# Diego Gomez-Gualdron <dgomezgualdron@mines.edu>
# Ben Bucior <ben.bucior@gmail.com>
#
# ToBaCCo is free software: ... | tobacco-mofs/tobacco | connect_edgetonode.py | Python | lgpl-3.0 | 18,402 | [
"CRYSTAL"
] | f7455c3ccddefb23345158e797de5848afcffe8dbbe391834d8e6dfd8d532c8e |
#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
This module implements general data operations.
"""
from __future__ import print_function # start to adapt to Python 3
import numpy as np
from scipy.interpolate import interp1d
from numpy.lib.recfunctions import append_fields
import warnings
class MissingLabel(Exce... | LeBarbouze/tunacell | tunacell/base/datatools.py | Python | mit | 25,773 | [
"Gaussian"
] | f42617718c4ac47a17fa0bdeca4f68ca03648b848607ea3de1e525243982e056 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# (c) The James Hutton Institute 2016-2019
# (c) University of Strathclyde 2019-2020
# Author: Leighton Pritchard
#
# Contact:
# leighton.pritchard@strath.ac.uk
#
# Leighton Pritchard,
# Strathclyde Institute for Pharmacy and Biomedical Sciences,
# 161 Cathedral Street,
# G... | widdowquinn/pyani | tests/test_dependencies.py | Python | mit | 2,627 | [
"BLAST",
"Biopython"
] | ce39a3ebfe13e8158425f847b6d9a1b2b395e980c8941c47747c46b28da15551 |
#!/usr/bin/env python
##########################################################################
#
# Copyright 2011 Jose Fonseca
# All Rights Reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in th... | execunix/vinos | xsrc/external/mit/MesaLib/dist/src/gallium/tools/trace/diff_state.py | Python | apache-2.0 | 10,035 | [
"VisIt"
] | 86f698552df73060fbb90b924fb307d70595790a59b23264b6486c6491848ed7 |
"""
Copyright (c) 2004-Present Pivotal Software, Inc.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.... | yuanzhao/gpdb | src/test/tinc/tincrepo/mpp/gpdb/lib/models/sql/template/test/test_sql_template_test_case.py | Python | apache-2.0 | 3,307 | [
"ORCA"
] | a80980521747804568cd2bf6b02978d7c581f1679ef699e6fce90a7bc4f5d5ca |
import numpy as np
import matplotlib.pyplot as plt
from gpaw.response.chi0 import frequency_grid
omegamax = 50.0
domega0 = 0.2
plt.figure(figsize=(5, 5))
for omega2 in [2.5, 5, 10, 15, 20, np.inf]:
x = frequency_grid(domega0, omega2, omegamax)
y = range(len(x))
if omega2 == np.inf:
label = '$\\o... | robwarm/gpaw-symm | doc/tutorials/dielectric_response/plot_freq.py | Python | gpl-3.0 | 664 | [
"GPAW"
] | 7caf6e794bcbba9ce920461cb382ff4242d8fdeb1c469f59a25adc5b93a435a0 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/standard_system/PolymerMelt.py | Python | gpl-3.0 | 6,701 | [
"ESPResSo"
] | 967a598ff0057185069bea9155ccf7e671ad9fc6fd98558f16f310bd15e0a0db |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are m... | mikehulluk/morphforge | src/morphforge/simulation/neuron/objects/obj_basesetup.py | Python | bsd-2-clause | 3,141 | [
"NEURON"
] | 661d4c1705d361953c8b2e0a04c4243a3bf4921b6205914ab93db164619375ef |
"""Handle disambiguation of reads from a chimeric input, splitting by organism.
Given specification of mixed input samples, splits a sample into multiple
sub-samples for alignment to individual genomes, then runs third-party
disambiguation scripts to reconcile.
Uses disambiguation scripts contributed by AstraZeneca, ... | a113n/bcbio-nextgen | bcbio/pipeline/disambiguate/__init__.py | Python | mit | 7,540 | [
"BWA"
] | 11d8605dc2cfa0da1c6a82e8be4bc9a436c057592c111703e8a25b892bb94470 |
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from .model import Model
from .parameterization.variational import VariationalPosterior
from .mapping import Mapping
from .. import likelihoods
from .. import kern
from ..inference.l... | esiivola/GPYgradients | GPy/core/gp.py | Python | bsd-3-clause | 32,513 | [
"Gaussian"
] | 9d74e3b020f64afb9211bd19380947651720683458043fc23a6ca5789364be96 |
# Copyright (C) 2009-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | FedoraScientific/salome-hexablock | doc/pyplots/test_join_quads.py | Python | lgpl-2.1 | 2,270 | [
"VTK"
] | 02d2fa5d8eeac402c41a5a7b9dc3f9e65e4dd57f6e8a96c214045064e45be8af |
"""
============================================================
Sparse recovery: feature selection for sparse linear models
============================================================
Given a small number of observations, we want to recover which features
of X are relevant to explain y. For this :ref:`sparse linear ... | seckcoder/lang-learn | python/sklearn/examples/linear_model/plot_sparse_recovery.py | Python | unlicense | 7,106 | [
"Gaussian"
] | 24e747a73d498540147597c071851c41f5b718778cf5a45fee526dba97c499b0 |
from __future__ import print_function
from builtins import range
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
import os
import random
from h2o.estimators.gbm import H2OGradientBoostingEstimator
def milsong_checkpoint():
milsong_train = h2o.upload_file(pyunit_utils.locate("bigd... | nilbody/h2o-3 | h2o-py/tests/testdir_algos/gbm/pyunit_milsongs_large_gbm.py | Python | apache-2.0 | 2,901 | [
"Gaussian"
] | bc3cb01041519af8c38ff3c46ffaa927dd904d931c69240a9a18ae22e76ed671 |
#!/usr/bin/env python
"""
dirac-rss-set-status
Script that facilitates the modification of a element through the command line.
However, the usage of this script will set the element token to the command
issuer with a duration of 1 day.
"""
from datetime import datetime, timedelta
from DIRAC ... | avedaee/DIRAC | ResourceStatusSystem/scripts/dirac-rss-set-status.py | Python | gpl-3.0 | 6,373 | [
"DIRAC"
] | e6fc5d8059cd294628cd3b09e05cadd1f996a97bef43734b99c54c175ea1f31b |
import altimetry.data.hydro as htools
import matplotlib.pyplot as plt
#from mayavi import mlab
#import chaco.shell as plt
import numpy as np
import altimetry.tools as atools
#limit=np.array([42.,6.,44.5,11.])
limit=np.array([41.,4.,44.5,12.])
verbose=0
#cor_extract='C:\\VMShared\\data\\hydro\\IMEDIA\\ex... | rdussurget/py-altimetry | altimetry/examples/coriolis_report.py | Python | lgpl-3.0 | 5,536 | [
"Mayavi"
] | 18af0c6fa585344d0af316b123b297d76d030da549b54b350812c3ca10d3f1a5 |
#!/usr/bin/env python
"""
This peak-caller script is part of the CLAM pipeline.
It takes input from re-aligner output, and use permutation to call peaks.
Tested under python 2.7.3
"""
__author__ = 'Zijun Zhang'
__version__ = '1.1.0'
__email__ = 'zj.z@ucla.edu'
import os
import sys
from collection... | Xinglab/CLAM | CLAM/bak/peakcaller.bak.py | Python | gpl-3.0 | 15,235 | [
"pysam"
] | f2e36221df6380018aef06fd158aeeddc322bfc75a9c8853b8ff48095fdfacf2 |
# -*- coding: utf-8 -*-
import os
from PIL import Image
import os.path
import time
import torch
import torchvision.datasets as dset
import torchvision.transforms as trn
import torch.utils.data as data
import numpy as np
from PIL import Image
# /////////////// Data Loader ///////////////
IMG_EXTENSIONS = ['.jpg', '... | hendrycks/robustness | ImageNet-C/create_c/make_tinyimagenet_c.py | Python | apache-2.0 | 19,381 | [
"Gaussian"
] | f2ba0304e4a5ca377b917ede9831a4a33c684e854bca17252d2afacebaa20e64 |
from panda3d.core import *
from direct.showbase.DirectObject import DirectObject
import math
import copy
class TexMemWatcher(DirectObject):
"""
This class creates a separate graphics window that displays an
approximation of the current texture memory, showing the textures
that are resident and/or activ... | tobspr/panda3d | direct/src/showutil/TexMemWatcher.py | Python | bsd-3-clause | 43,152 | [
"VisIt"
] | 7e241000d144465fe9895b7de827a76a2b258b025bcb7198af059b6df6aec6a4 |
import copy
from registry import user as mr, clstypes
from pysal.weights import W
try:
import patsy as p
except:
p = None
from numpy import array, ndarray, asarray
from pysal.common import iteritems as diter
import inspect
#would like to just wrap this in the opt decorator...
def pandashandler(formula_like, d... | TaylorOshan/pysal | pysal/contrib/handler/handler.py | Python | bsd-3-clause | 4,767 | [
"COLUMBUS"
] | cc094eac05c775dd51d20efc347ee93c688642e06b59472063e0670189c6200c |
#!/usr/bin/env python3
import argparse
import os
import re
import sqlite3
import sys
from collections import defaultdict
from biocode import utils, annotation, gff, things
## constants
DEFAULT_PRODUCT_NAME = "hypothetical protein"
next_ids = defaultdict(int)
def main():
parser = argparse.ArgumentParser( descri... | jorvis/biocode | sandbox/jorvis/parse_ergatis_euk_functional_pipeline.marcus.py | Python | mit | 18,760 | [
"BLAST"
] | 17f52c26821ec09b8e5ed51008d0b8d12b764b8af8f14fb2f23ed2bf23b7fe02 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/r-graph/package.py | Python | lgpl-2.1 | 1,665 | [
"Bioconductor"
] | 11f58b6d12c7481f518d58354f9ed2ef0bc5aa4c5d5df291adba54298a38c001 |
import numpy as np
from numpy import genfromtxt
import matplotlib.pyplot as plt
#data_or = genfromtxt("test_deep_fbl_cpp_feedback_learning_or.dat", delimiter=" ")
#data_xor = genfromtxt("test_deep_fbl_cpp_feedback_learning_xor.dat", delimiter=" ")
#data_and = genfromtxt("test_deep_fbl_cpp_feedback_learning_and.dat", d... | nlholdem/icodoom | tmp/plotOutputs.py | Python | gpl-3.0 | 2,070 | [
"NEURON"
] | 1ba25ea0148610e7144fb13f5066f964c7a170175045a8113bb434eabc113aac |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/tools/k2gamma.py | Python | apache-2.0 | 8,990 | [
"PySCF"
] | cd952f89de84ea0bfd2df756def4ebd7f8f4c8bafcd331f36427c3ba95957f43 |
# $Id$
#
# Copyright (C) 2004-2006 Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
"""
Contains an implementation of Topol... | jandom/rdkit | rdkit/Chem/AtomPairs/Torsions.py | Python | bsd-3-clause | 5,369 | [
"RDKit"
] | e99f160fbcda53a56afa9fad778173d8be473b890c41b6162b6fbff1b1965f14 |
#!/usr/bin/env python
'''
MP2 at an individual k-point
'''
from functools import reduce
import numpy
from pyscf.pbc import gto, scf, mp
cell = gto.Cell()
cell.atom='''
C 0.000000000000 0.000000000000 0.000000000000
C 1.685068664391 1.685068664391 1.685068664391
'''
cell.basis = 'gth-szv'
cell.pseudo = 'gth-p... | sunqm/pyscf | examples/pbc/22-k_points_mp2.py | Python | apache-2.0 | 3,521 | [
"PySCF"
] | b9840a8f23b836a37453be1eb7092e69de93797b8df858ef24904d45990b8cf4 |
#!/usr/bin/env python
# This example demonstrates how to use the vtkLineWidget to seed and
# manipulate streamlines. Two line widgets are created. One is invoked
# by pressing 'i', the other by pressing 'L' (capital). Both can exist
# together.
import vtk
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGe... | hendradarwin/VTK | Examples/GUI/Python/StreamlinesWithLineWidget.py | Python | bsd-3-clause | 4,350 | [
"VTK"
] | cfdb94c3d53b14e8bd757b41bc586703ffb078156e992cdb52fe0614dac0331b |
# Licensed under GPL version 3 - see LICENSE.rst
from functools import wraps
import collections
from copy import copy
import warnings
import numpy as np
from transforms3d import affines, euler
from astropy.table import Table
from astropy import table
import astropy.units as u
from ..simulator import Sequence
from .unc... | Chandra-MARX/marxs | marxs/design/tolerancing.py | Python | gpl-3.0 | 31,063 | [
"Gaussian"
] | 6bc7f5305562f4857290fe2daa5365bda71ee8f8ac9a2a8452a8bd6616a9450c |
#!/usr/bin/env python
import os
import sys
import numpy as np
import matplotlib.pyplot as plt
import fitsio
import galsim
from noise import PlaceholderNoiseBuilder
#from psf import ConstPSFBuilder
from galaxies import COSMOSGalaxyBuilder
#import constants
"""
attempting to hack out just part of great3 needed for
mak... | kstory8/egret | egret/galaxymakers/great3_cosmos_gals/drive_great3.py | Python | bsd-3-clause | 3,686 | [
"Galaxy",
"Gaussian"
] | cbe6f37685e082bc6b34136728787ae9eff1670ae938dc0f209dedca16b3bc19 |
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are ... | wizmer/NeuroM | neurom/io/tests/test_h5_reader.py | Python | bsd-3-clause | 6,633 | [
"NEURON"
] | 924cd071ad0b2fd2f13adbc762221101e51a5784f7de4373112d89aedeb8db49 |
#
# Copyright 2002 by Michael Hoffman. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
Docstring
"""
from __future__ import generators
__version__ = "$Revision: 1.4 $"
# ... | dbmi-pitt/DIKB-Micropublication | scripts/mp-scripts/Bio/GFF/GenericTools.py | Python | apache-2.0 | 3,784 | [
"Biopython"
] | d2915cf9a985a8ad1d21de98ab4c5e524712c26e519b18634ecf4e788118a117 |
###########################################################################
#
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/l... | google/starthinker | dags/itp_audit_dag.py | Python | apache-2.0 | 35,487 | [
"VisIt"
] | 65b399bba8c8676ffbbb0d904914b0667851e98d5b8ee185eb4160c75d8acb63 |
"""
This script introduces how the Tilde organizer
can be used as a bibliography manager.
See https://github.com/tilde-lab/pycrystal/tree/master/papers
for an example usage for the CRYSTAL17 code online bibliography.
Two files are currently needed:
* bib_els_file (raw bibliography items as presented online)
* bib_data_... | tilde-lab/tilde | utils/add_pdf_articles.py | Python | mit | 4,794 | [
"CRYSTAL"
] | 74b8be3bdd3ad6e805434cb043f3bf28929e8046b349dd999f0e13861f79aacd |
import tensorflow as tf
import numpy as np
import pylab as plt
from dopamine.utils import *
from dopamine.values import *
from keras.models import Sequential, model_from_json, load_model
from keras.layers import Dense
from keras import backend
import logging
from mathtools.utils import Vessel
logging.basicConfig(level=... | lightscalar/dopamine | dopamine/trpo.py | Python | mit | 13,789 | [
"Gaussian"
] | e8493880d9d4fc30ccf83c7c0f6a1e089e02f50655e498c5497526ca9859003e |
r"""
Piezo-elasticity problem - homogenization of a piezoelectric linear elastic
matrix with embedded metalic electrodes, see [1] for details.
[1] E.Rohan, V.Lukes: Homogenization of the fluid-saturated piezoelectric
porous media. International Journal of Solids and Structures 147, 2018,
pages 110-125. https://doi.org... | vlukes/sfepy | examples/multi_physics/piezo_elasticity_macro.py | Python | bsd-3-clause | 4,687 | [
"VTK"
] | a52dd3e5cd267680a2943e630625db409e73dab906a94c361ed06b17c53beb54 |
from selenium import selenium
import unittest, time, re, urllib2
from post import *
import os
import sys
import time
local = True # semi convenient flip-flop for local versus remote testing
if local:
sites = {"http://localhost:8000": ["brian", "test",
"localhost:8000", "Pathfind... | icomms/wqmanager | tests/deployment/selenium/hq_test.py | Python | bsd-3-clause | 4,482 | [
"Brian"
] | b8bffba364f7015803b9d72ecece56b7c2dc498e7ac53bb09f2ec41b480d8089 |
##############################################################################
# Copyright (c) 2017, The VOTCA Development Team (http://www.votca.org)
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack... | mfherbst/spack | var/spack/repos/builtin/packages/votca-csg/package.py | Python | lgpl-2.1 | 2,076 | [
"Gromacs"
] | 6bfc8de42705b931cf45957c9f4cb158ccf87e4c327fc2d7bdaf453f25a28f4f |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.2
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | fernandezcuesta/ansible | lib/ansible/modules/network/avi/avi_vrfcontext.py | Python | gpl-3.0 | 4,514 | [
"VisIt"
] | 03ffc076963b20436948cd563f725099a93833e4c17e8632c5ff5c3bd4dfbb15 |
"""
Test courseware search
"""
from __future__ import absolute_import
import json
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.common.logout import LogoutPage
from common.tes... | ESOedX/edx-platform | common/test/acceptance/tests/lms/test_lms_courseware_search.py | Python | agpl-3.0 | 7,755 | [
"VisIt"
] | f19e20109d4647080c8ebc504425bcc2b57176c0ff32347e205ff97b857e661b |
# -*- coding: utf-8 -*-
"""
Acceptance tests for Video.
"""
import os
from unittest import skipIf
from mock import patch
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.lms.co... | stvstnfrd/edx-platform | common/test/acceptance/tests/video/test_video_module.py | Python | agpl-3.0 | 8,866 | [
"VisIt"
] | aa99c96fb8bc79013f4c7e8f01e1bab4088491dadaa7dedd1eb02f3e04d63816 |
# $HeadURL$
__RCSID__ = "$Id$"
""" This backend just print the log messages through the standar output
"""
from DIRAC.FrameworkSystem.private.logging.backends.BaseBackend import BaseBackend
import sys
class PrintBackend( BaseBackend ):
COLOR_MAP = {
'black' : 0,
'red' : 1,
'green' : 2,
... | vmendez/DIRAC | FrameworkSystem/private/logging/backends/PrintBackend.py | Python | gpl-3.0 | 1,402 | [
"DIRAC"
] | b3b05c2f7c8dc5f76d105e5c64b465a64af9c1bbc0bbc60d3fd7774a0faa7ad4 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | SKIRT/PTS | modeling/preparation/component.py | Python | agpl-3.0 | 2,006 | [
"Galaxy"
] | c21e81f4524037e6eaee938422a46d6f3e4805fd56065ff2e0b3f339a2c0c8b5 |
"""
This file is part of gempy.
gempy is free software. For license details, see the LICENSE.md file supplied
with gempy
Created on 10/10 /2018
@author: Miguel de la Varga
"""
import numpy as np
import pandas as pn
from numpy import ndarray
from typing import Union
import warnings
from gempy.core.model import Proj... | cgre-aachen/gempy | gempy/gempy_api.py | Python | lgpl-3.0 | 13,534 | [
"VTK"
] | c0da454c7b94ea7bb8f223bd1071a6ff3c3b49d86d64e02e8d00c0598a18fb01 |
#!usr/bin/env python
import sys
import os
import itertools
from itertools import izip
#import matplotlib.pyplot as plt
from Bio import SeqIO
import scipy as np
from scipy import median, mean
from scipy.optimize import curve_fit
from scipy.stats.distributions import t
from struct import pack
from random import shuffle, ... | Rinoahu/fastclust | deprecate/py27/scripts/deprecate/pangenome.py | Python | gpl-3.0 | 11,736 | [
"VisIt"
] | 367b366356d746ba9c97b3ddb8be7b743c2d51ba5ec4d2c8462c52dccef7031a |
"""
local path implementation.
"""
from __future__ import with_statement
from contextlib import contextmanager
import sys, os, re, atexit, io, uuid
import py
from py._path import common
from py._path.common import iswin32, fspath
from stat import S_ISLNK, S_ISDIR, S_ISREG
from os.path import abspath, normcase, normpa... | UK992/servo | tests/wpt/web-platform-tests/tools/third_party/py/py/_path/local.py | Python | mpl-2.0 | 35,346 | [
"VisIt"
] | 8f80542a72318a8f081e651ce18dedb011d9251bee21e52abde184dd92939b26 |
import numpy as np
import pygame
import cv2
from scipy import linalg
from scipy import stats
from Tools import as_int
from Sensor import Sensor as AbstractSensor
from Sensor import SensorNoise as AbstractSensorNoise
class Sensor(AbstractSensor):
def __init__(self, size, fps=None):
super(Sensor, self).... | Bjarne-AAU/MonteCarloLocalization | Vision.py | Python | gpl-3.0 | 6,947 | [
"Gaussian"
] | 7a0a596890b4ea90b35a29e528e13f53bbb166d39207219e01e61988b10ac8c8 |
from __future__ import print_function
import os
import numpy as np
import subprocess as sub
import shutil
####################################################
class RunCrystal:
_name_="RunCrystal"
def __init__(self, submitter):
self._submitter = submitter
#------------------------------------------------- ... | willwheelera/mainline | utils/autogen/runcrystal.py | Python | gpl-2.0 | 10,784 | [
"CRYSTAL"
] | 2fb4f811d56ae6e82e8f2d14c6bc59b671e48b32e12f2037c7005635fc954bd6 |
# -*- coding: utf-8 -*-
# SyConn - Synaptic connectivity inference toolkit
#
# Copyright (c) 2016 - now
# Max-Planck-Institute of Neurobiology, Munich, Germany
# Authors: Philipp Schubert, Joergen Kornfeld
import os
import time
import numpy as np
from . import log_proc
import matplotlib.pyplot as plt
import matplotl... | StructuralNeurobiologyLab/SyConn | syconn/proc/stats.py | Python | gpl-2.0 | 29,949 | [
"NEURON"
] | 17a1020ca47e9418f28f80d05a366c6bc97f06147f366234ac56ae15167d14d7 |
# epicyclic_gearing_macro.py
# the macro to generate an epicyclic_gearing.
# created by charlyoleg on 2013/10/03
#
# (C) Copyright 2013 charlyoleg
#
# This file is part of the Cnc25D Python package.
#
# Cnc25D is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | charlyoleg/Cnc25D | cnc25d/tests/epicyclic_gearing_macro.py | Python | gpl-3.0 | 9,379 | [
"VisIt"
] | fa6dee2c6b44220ebc4d14ff9c92511745bc5bf40f78ef64dc5680df96fb2673 |
""" Container for TaskManager plug-ins, to handle the destination of the tasks
"""
from DIRAC import gLogger
from DIRAC.Core.Utilities.List import fromChar
from DIRAC.Core.Utilities.SiteSEMapping import getSitesForSE
from DIRAC.DataManagementSystem.Utilities.DMSHelpers import DMSHelpers
from DIRAC.ConfigurationSystem... | chaen/DIRAC | TransformationSystem/Client/TaskManagerPlugin.py | Python | gpl-3.0 | 5,384 | [
"DIRAC"
] | 4d2bc7501b60c2874bf6cbac3a0c62f9c612b77f020c40614c43e5b976fc31d5 |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import functools
import warnings
import numpy as np
import pandas as pd
from ..plot.plot import _PlotMethods
from . import duck_array_ops
from . import indexing
from . import groupby
from . import resample
fr... | rabernat/xray | xarray/core/dataarray.py | Python | apache-2.0 | 71,555 | [
"NetCDF"
] | daade851c8588f67863d80b68889abd72b506ea906e764c0b4137df1d8670327 |
#-*- coding=utf-8 -*-
#-----------------------
# Named: Document Filtering
# Created: 2016-08-01
# @Author: Qianfeng
#-----------------------
import re
import math
from sqlite3 import dbapi2 as sqlite
# 测试样例
def sampletrain(c1):
# c1 -- Classifier instance
c1.train('Nobody owns the water.','good')
c... | qianfengzh/ML-source-code | algorithms/CollectiveIntelligence/CH06-Document Filtering/docclass.py | Python | gpl-2.0 | 7,457 | [
"CASINO"
] | 412b765d7810aae8b93ed0146a1b21cd1fc6c5b69da1f4ee917a058775bf4110 |
import ocl as cam
import camvtk
import time
import vtk
import math
import datetime
red= (1,0,0)
green= (0,1,0)
blue= (0,0,1)
cyan= (0,1,1)
yellow= (1,1,0)
pink = ( float(255)/255,float(192)/255,float(203)/255)
grey = ( float(127)/255,float(127)/255,float(127)/255)
orange = ( float(255)/255,float(165)/255,float(0)/255... | AlanZatarain/opencamlib | src/attic/oct_test2.py | Python | gpl-3.0 | 6,361 | [
"VTK"
] | 3f9c0e74d493e46af8c42c4ca1bef92b09fb9ac5137fec3ab1cfd5e25e0de9cf |
# Import simple and validate expected behavior on creating several server
# connection as well as switching from one to another.
import sys
from paraview import smtesting
smtesting.ProcessCommandLineArguments()
# Test fails method
def failed(msg):
print "Error: %s" % msg
sys.exit(1)
# ---- Start testing ----
f... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/ParaViewCore/ServerManager/Default/Testing/Python/MultiServer.py | Python | gpl-3.0 | 1,696 | [
"ParaView"
] | 9c8e9de4d9f5d2c55cdeaa14f55b1b22fdd129388caced27982598097a57787b |
"""
vending_machine
=====
Simulates a vending machine.
Configurable parameters::
{
"product_catalogue" : (optional) [ "name" : "Mars Bar", "price" : 0.80, "category" : "snack", "lifetime" : "P1000D", ... ]
"send_available_positions" : (optional) False
"cashless_to_cash_ratio" :... | DevicePilot/synth | synth/devices/vending_machine.py | Python | mit | 21,874 | [
"Galaxy"
] | 8bf222d6400869d49c96a507fa35ac5dc845bf34deb6917d3cb1803111905a9f |
"""
Hidden Markov model
"""
__author__ = "Frank Noe and John D. Chodera"
__copyright__ = "Copyright 2015, John D. Chodera and Frank Noe"
__credits__ = ["Frank Noe", "John D. Chodera"]
__license__ = "LGPL"
__maintainer__ = "Frank Noe"
__email__="frank DOT noe AT fu-berlin DOT de"
import time
import copy
import numpy... | marscher/bhmm | bhmm/estimators/maximum_likelihood.py | Python | lgpl-3.0 | 16,556 | [
"Gaussian"
] | 87569b39f2425d1df2d5915d9914c054ca6dc82d7e2c075a832ecc9889cdde75 |
#!/usr/bin/env python
"""
Get VM instances available in the configured cloud sites
"""
from DIRAC import gLogger, exit as DIRACExit
from DIRAC.Core.Base.Script import Script
site = None
ce = None
image = None
voName = None
def setCE(args):
global ce
ce = args
def setSite(args):
global Site
Site =... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/scripts/dirac_vm_endpoint_status.py | Python | gpl-3.0 | 2,007 | [
"DIRAC"
] | f3b84185c43e99def74683c560a667c977d6885c82f316cae0d5db2e199525a6 |
#!/usr/bin/env python
"""
This is a very simple plot script that reads a 3D DSM-Kernel sensitivity kernel
file and make a plot of it.
"""
import matplotlib.pyplot as plt
import numpy as np
from pyevtk.hl import gridToVTK
def read_fortran_record(binfile, count, dtype):
"""reads a sequential fortran binary file rec... | IPGP/DSM-Kernel | examples/single_kernel/simple_write_vtk.py | Python | gpl-3.0 | 2,421 | [
"VTK"
] | bc9646a6c614733e4ea3e7b1152a4d3c488e73ae766a04be8f821a8e8b2144db |
import xml.etree.ElementTree as ET
import csv
import copy
def LoadMetricDefs(metric_def_csv):
"""
Load metric definitions from CSV file
:param metric_def_csv: Full absolute path to the CSV file that contains metric definitions
:return: Dictionary of metric definitions. Key is verbose metric name (e.g. ... | SouthForkResearch/CHaMP_Metrics | test/topometrics/read_manual_metrics.py | Python | gpl-3.0 | 2,687 | [
"VisIt"
] | 844e429d56fc11d7996c8f99645b7628b28909632464c38686713f1413fb014e |
import numpy as np
from scipy._lib._util import check_random_state
def rvs_ratio_uniforms(pdf, umax, vmin, vmax, size=1, c=0, random_state=None):
"""
Generate random samples from a probability density function using the
ratio-of-uniforms method.
Parameters
----------
pdf : callable
A ... | pizzathief/scipy | scipy/stats/_rvs_sampling.py | Python | bsd-3-clause | 7,097 | [
"Gaussian"
] | 25bca76475cf2a623fadbd8027c818daa64dee5444a3ef274fe043c2d4953692 |
#!/usr/bin/env python
# TODO: Free energy of external confinement for poseBPMFs
import os
import cPickle as pickle
import gzip
import copy
from AlGDock.IO import load_pkl_gz
from AlGDock.IO import write_pkl_gz
from AlGDock.logger import NullDevice
import sys
import time
import numpy as np
from collections import O... | CCBatIIT/AlGDock | AlGDock/BindingPMF.py | Python | mit | 73,986 | [
"NAMD",
"OpenMM"
] | e669a608e0d51872bbecceb15ca353d69dc6b76530cacd38b2e6a8abe3e9e4c4 |
# -*- mode: python; coding: utf-8 -*-
# Copyright 2014-2018 Peter Williams <peter@newton.cx>
# Licensed under the GNU General Public License, version 3 or higher.
"""
The command-line interface.
"""
from __future__ import absolute_import, division, print_function, unicode_literals
import codecs, io, json, os.path, s... | pkgw/bibtools | bibtools/cli.py | Python | mit | 27,659 | [
"VisIt"
] | 9c4941906e3ae650c774ab3344140beff726640f45eef4b8ce6d8b0416372624 |
# Copyright (c) 2018, Henrique Miranda
# All rights reserved.
#
# This file is part of the yambopy project
#
from __future__ import division
import numpy as np
def calculate_distances(kpoints):
"""
take a list of k-points and calculate the distances between all of them
"""
kpoints = np.array(kpoints)
... | alexmoratalla/yambopy | qepy/lattice.py | Python | bsd-3-clause | 3,952 | [
"Quantum ESPRESSO"
] | 548e1e799d8d6e8e207f5166343ba9d386b70b8f2cbba42c97cdceb7d8b8351f |
#TODO: should be able to search all rec tags and get the list of recs (handle or RPNMeta)
#TODO: consistant naming in doc for; rec, data , meta, grid...
#TODO: class RPNFields (a collection of related rec: levels,#...)
#TODO: expand RPNGrid to accept multi-grids and work better with #-grids
#TODO: convert to/from NetCD... | meteokid/python-rpn | __old/rpnstd.py | Python | lgpl-2.1 | 76,771 | [
"NetCDF"
] | d11b3878941d483c566544d60f68f8254f618acfa93b6f9411bfeb92f6e8f444 |
from __future__ import division, print_function
__author__ = "adrn <adrn@astro.columbia.edu>"
# Third-party
import astropy.units as u
import numpy as np
# Project
from ..units import usys
from ..celestialmechanics_class import SimulatedRVOrbit
__all__ = ['OrbitModel']
# Magic numbers:
_ivar_disk = (1 / (30.*u.km/u... | adrn/ebak | ebak/singleline/inference.py | Python | mit | 6,975 | [
"Gaussian"
] | 9f82ee7d8bd94df9ab9a95fd180bc698ec45a6514bb156a9592641e05fd6da71 |
import unittest
from gmrf import GaussianField
from gmrf import SPDMatrix
import numpy as np
import matplotlib.pyplot as plt
from scipy import linalg
from scipy import sparse as sp
def fbm_cov(x,y,H):
"""
Compute the fractional Brownian motion covariance function
"""
return 0.5*np.abs(x)**(2*H) + 0... | hvanwyk/quadmesh | tests/test_gmrf/test_gaussian_field.py | Python | mit | 15,979 | [
"Gaussian"
] | 9faac20717a4d2c11f89ae4e2a14129878d33038f812bdb055b560c622bb0ecb |
"""
Try running sequential scan on a local file.
"""
from net.grinder.script import Test
from net.grinder.script.Grinder import grinder
from dapbench.jython.util import generate_subset_requests
from dapbench.jython.netcdf import Dataset
import data_urls
partition_dict = {'time': 120}
variable = 'ta'
# Take the... | cedadev/dapbench | grinder/remote_test.py | Python | bsd-3-clause | 1,155 | [
"NetCDF"
] | af7acebbd6c5144346f598356fd4d67f72b2a8d8710a864c1e6aa3292d4ec38f |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# startexe - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of ... | heromod/migrid | mig/shared/functionality/startexe.py | Python | gpl-2.0 | 1,018 | [
"Brian"
] | 4f8a2d38c8d604affbd7064ab0c720ff93ecc8cdf5b56786e88fe35a0dbdbea0 |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | abgworrall/kubernetes | cluster/juju/layers/kubernetes-master/reactive/kubernetes_master.py | Python | apache-2.0 | 63,197 | [
"CDK"
] | 01ab4ab1f60b93438f94c5c96a6aff7a6ea3a8ada639883e178a5fdf5de15036 |
"""
Artificial Intelligence for Humans
Volume 2: Nature-Inspired Algorithms
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2014 by Jeff Heaton
Licensed under the Apache License, Version 2.0 (the "License")... | PeterLauris/aifh | vol2/vol2-python-examples/lib/aifh/rbf_network.py | Python | apache-2.0 | 4,921 | [
"Gaussian",
"VisIt"
] | 412a930cadd0b097a6a4f04484ce561196316f2ad8636abda722b68ea9a8a54b |
#
#
# A file which generates an input frequency vs output frequency curve for various cells
#
# Author: Dan Ruedt
#
# This file has been developed as part of the neuroConstruct project
# This work has been funded by the Medical Research Council and the
# Wellcome Trust
#
#
from sys import *
fr... | pgleeson/TestArea | models/GranCell_Dan_analysis/f-F_plot.py | Python | gpl-2.0 | 1,182 | [
"NEURON"
] | 0596c21dcd247619be836882c5aa3bd50cc22b5364e2db974ea03c1b5898c467 |
'''
Created on Aug 2, 2011
@author: sean
'''
from __future__ import print_function
from meta.asttools.tests import AllTypesTested, assert_ast_eq
import unittest
from meta.asttools.mutators.prune_mutator import PruneVisitor
import ast
from meta.testing import py2only
tested = AllTypesTested()
class TestExclusive(un... | enthought/Meta | meta/asttools/tests/test_prune.py | Python | bsd-3-clause | 9,944 | [
"VisIt"
] | 8e926841994d77961cac5cdacb75d46105cd8f634d1cd416bbb2a139fdeb8a64 |
# a benchmark of the inh_gamma_generator independent multiple targets
# feature.
# Compare simulation times to the equivalent multiple generator
# objects for independent realizations (bench.py).
#
# On my Opteron system, the timed simulation step is almost
# 20 times faster (than the bench.py implementation).
#
# A... | gewaltig/cython-neuron | developer/examples/inh_gamma/bench_poisson.py | Python | gpl-2.0 | 2,178 | [
"NEURON"
] | 56ac92ff6d0969c4f3f180935707e3700ddd7e94ac97341304ae9445b5fb6694 |
#============================================================================
#
# Copyright (c) Kitware Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses... | agirault/VesselView | Modules/Scripted/Welcome/Welcome.py | Python | apache-2.0 | 4,905 | [
"VTK"
] | d1ad1221fca7cd00e9e1521b4c490b486999fc100f65eccfd5647d4868746d73 |
from mhvdb2 import app, mailer
from flask import render_template, request, flash, redirect, url_for
from mhvdb2 import resources
from datetime import datetime
def get_post_value(key):
try:
return request.form[key]
except KeyError:
return None
@app.route('/')
def index():
return render_te... | makehackvoid/mhvdb2 | mhvdb2/routes.py | Python | mit | 3,441 | [
"VisIt"
] | 2fd1bf792a7124f28d021ddf45b5fe387168704f8a14b5e2f3918859e1f64ac9 |
#! /usr/bin/env python
"""
Model for quadrature amplitude modulation (QAM); contains `MQAM` class.
Revision Info
=============
* $LastChangedBy: mandke $
* $LastChangedDate: 2010-10-19 16:34:02 -0500 (Tue, 19 Oct 2010) $
* $LastChangedRevision: 4811 $
:author: Ketan Mandke <kmandke@mail.utexas.edu>
:copyright:
... | reidlindsay/wins | wins/digital/mqam.py | Python | apache-2.0 | 9,401 | [
"Gaussian"
] | 932aaa5352548a040cc0c72cba39963046b2324dfc1783f349744aab7d985142 |
# -*- coding: utf-8 -*-
# Copyright (c) 2015, ESS LLP and contributors
# For license information, please see license.txt
from __future__ import unicode_literals
import frappe
from frappe.model.document import Document
import json
from frappe.utils import getdate, add_days, get_time, time_diff_in_seconds
from frappe im... | ESS-LLP/erpnext-medical | erpnext/healthcare/doctype/patient_appointment/patient_appointment.py | Python | gpl-3.0 | 21,383 | [
"VisIt"
] | 38422d5d47e2238e6a09402b3da7b30c11ae001697e2578fd4b2c67a9fe54a96 |
#------------------------------------------------------------------------------
# Copyright (c) 2005, Enthought, Inc.
# All rights reserved.
#
# This software is provided without warranty under the terms of the BSD
# license included in enthought/LICENSE.txt and may be redistributed only
# under the conditions describe... | dmsurti/mayavi | tvtk/pyface/ui/qt4/scene.py | Python | bsd-3-clause | 17,407 | [
"VTK"
] | 0baa8fa3a5680f79e3b38d36aa1c1b2310fbf6efdec382b2786147f1539187ea |
"""
Courseware views functions
"""
import logging
import urllib
import json
from collections import defaultdict
from django.utils.translation import ugettext as _
from django.conf import settings
from django.core.context_processors import csrf
from django.core.exceptions import PermissionDenied
from django.core.urlr... | topxiaoke/myedx | lms/djangoapps/courseware/views.py | Python | agpl-3.0 | 36,560 | [
"VisIt"
] | 7badff3eff84a4f0bfde9c30de57b35a0da7aec673041384a69728fd994c8085 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
import json
import requests
from collections import defaultdict
from cookielib import LWPCookieJar
import numbers
import os
from os.path import dirname, join
from requests.packages import urllib3
import sys
from sys import platform
import time
if __debug__:
from traceback... | alfeg/EDMarketConnector | companion.py | Python | gpl-2.0 | 9,758 | [
"ORCA"
] | 351fc9894a9db8d5aa44a8743eba17f71a09496e083f49ba4e240a4de9977a0a |
#
# Author: Henrique Pereira Coutada Miranda
# Run a Silicon groundstate calculation using Quantum Espresso
#
from __future__ import print_function
import sys
from qepy import *
import argparse
scf_kpoints = [2,2,2]
nscf_kpoints = [2,2,2]
dg_kpoints = [4,4,4]
prefix = 'si'
matdyn = 'matdyn.x'
q2r = 'q2r.x'
pw = ... | henriquemiranda/yambopy | tutorial/si/gs_si.py | Python | bsd-3-clause | 7,879 | [
"CRYSTAL",
"Quantum ESPRESSO"
] | a4913b6a2fb940a29e972ac35df5642ed7289433808a8ce73e7813b4c5271013 |
"""
--- Day 1: No Time for a Taxicab ---
Santa's sleigh uses a very high-precision clock to guide its movements, and the clock's oscillator is regulated by
stars. Unfortunately, the stars have been stolen... by the Easter Bunny. To save Christmas, Santa needs you to retrieve
all fifty stars by December 25th.
Collect ... | codyhowarth/advent-of-code | src/day1/day1.py | Python | mit | 4,648 | [
"VisIt"
] | e3f7e1b181d82c4cf9ae487a390afc84a44e99223951d93e84f6a87c0e7ca3ee |
import operator
import numpy as np
import sys
if sys.argv[0] != "gen_py.py":
from api_autogen import *
import cgt
from . import core, utils
# Every non-underscored function in this file should have a docstring, and it should enforce that the input data is valid
# ==================================================... | nebw/cgt | cgt/api.py | Python | mit | 22,523 | [
"Gaussian"
] | 58a910d20cf15b215fed3ce308c9c1f42d4dd1697fc80cf4106070636f893fe5 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/e2openplugin-OpenWebif | plugin/controllers/views/web/mediaplayerremove.py | Python | gpl-2.0 | 5,249 | [
"VisIt"
] | 8da0c354a9a5b54350857753b042d6f77b4cfda8ff79b5e38f42dc58a6a1e70e |
"""
Numba-specific errors and warnings.
"""
import abc
import contextlib
import os
import sys
import warnings
import numba.core.config
import numpy as np
from collections import defaultdict
from numba.core.utils import chain_exception
from functools import wraps
from abc import abstractmethod
# Filled at the end
__a... | stuartarchibald/numba | numba/core/errors.py | Python | bsd-2-clause | 22,821 | [
"VisIt"
] | 76034ac64d9cfe5e769e5fe8087cd033a0835708bbb3955e4fd75d3b6d5f9ce5 |
# This file is part of BurnMan - a thermoelastic and thermodynamic toolkit for
# the Earth and Planetary Sciences
# Copyright (C) 2012 - 2021 by the BurnMan team, released under the GNU
# GPL v2 or later.
import numpy as np
from .. import constants
def molar_volume_from_unit_cell_volume(unit_cell_v, z):
"""
... | geodynamics/burnman | burnman/utils/unitcell.py | Python | gpl-2.0 | 3,500 | [
"Avogadro"
] | 567ee911cdc43f627d287cc5b4f55f3de7766a57edc05f91c122b7112db600c4 |
# (c) 2012-2017, Ansible by Red Hat
#
# This file is part of Ansible Galaxy
#
# Ansible Galaxy is free software: you can redistribute it and/or modify
# it under the terms of the Apache License as published by
# the Apache Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
... | chouseknecht/galaxy | galaxy/tests/unit/test_version.py | Python | apache-2.0 | 2,194 | [
"Galaxy"
] | dbc5f088ebe3dc2b9765c14ea8d01c0877cc5a40e32b8f7907828b33f2058533 |
# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
import json
import frappe.utils
from frappe.utils import cstr, flt, getdate, comma_and, cint
from frappe import _
from frappe.model.utils ... | vishdha/erpnext | erpnext/selling/doctype/sales_order/sales_order.py | Python | gpl-3.0 | 25,789 | [
"VisIt"
] | 7128d36e1bf8b603642d30d00819053ef89754a8ef81b01a3437936587713d1a |
# Copyright (C) 2015-2016 Allen Li
#
# This file is part of Animanager.
#
# Animanager is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | darkfeline/animanager | setup.py | Python | gpl-3.0 | 2,086 | [
"MOE"
] | 45d6ff44cb7989ee1bc0394ebbf0677e59454fd3dbee9d6577d1d9e01caf8d9c |
# Aaron (male)ok
# enlightened
# to sing
core = findDesig('Aaron', 'M')
maybeAddRelation('cognateOf', core, findDesig('Aaron', 'M'))
# Abbott (male)ok
# father of joy
core = findDesig('Abbott', 'M')
maybeAddRelation('cognateOf', core, findDesig('Abbie', 'F'))
maybeAddRelation('cognateOf', core, findDesig('Abbott', 'M... | philpot/tocayo | tocayoproj/rels18.py | Python | apache-2.0 | 359,633 | [
"Amber",
"Brian",
"COLUMBUS",
"CRYSTAL",
"Dalton",
"Desmond",
"MOE"
] | 96bf980e51c608887598b14479fc9c515d484b69d82505efdc8b23f851aa95e5 |
#!/usr/bin/env python
#
# Copyright (c) 2001 Autonomous Zone Industries
# This file is licensed under the
# GNU Lesser General Public License v2.1.
# See the file COPYING or visit http://www.gnu.org/ for details.
#
__cvsid = '$Id: Conversation.py,v 1.5 2002/05/03 14:16:14 zooko Exp $'
# standard Python modules... | zooko/egtp | common/Conversation.py | Python | agpl-3.0 | 25,778 | [
"VisIt"
] | f27c485426bd1c0dacc435efc254c2822d47bca343a732496f14b049c9094abf |
#!/usr/bin/env python
#
# Author: Oliver J. Backhouse <olbackhouse@gmail.com>
# George H. Booth <george.booth@kcl.ac.uk>
#
'''
An example of higher moment self-consistency in renormalization of self-energy in AGF2.
Note that only the default AGF2 is efficiently implemented (corresponding to AGF2(1,0) in
the ... | sunqm/pyscf | examples/agf2/05-agf2_moments.py | Python | apache-2.0 | 1,750 | [
"PySCF"
] | 6a79fd0221135e381d797ab16ff1425ddcee6014d40e547b5f39554ab74f5074 |
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