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"""The official API for working with notebooks in the current format version.
Authors:
* Brian Granger
* Jonathan Frederic
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. ... | WillisXChen/django-oscar | oscar/lib/python2.7/site-packages/IPython/nbformat/current.py | Python | bsd-3-clause | 6,059 | [
"Brian"
] | e8fb15ecf6df41ef0cf549ba6cafa6196ca949170b28d980718218dcb6dfe25d |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Track selection menu.
"""
# Import: std
import sys
import collections
# Import: PyCEGUI
import PyCEGUI
# Import: Configuration
from configuration import TheConfig
# Import: Menu
from menustandard import MenuStandard
from menumanager import Me... | xinderuila1/speed-dream | src/tools/ceguidemo/menutrackselect.py | Python | gpl-2.0 | 8,770 | [
"BLAST"
] | 3a7572cf6a9695817ba39be6103a9ba4c94284674c26d19344ba414ae9ae750a |
#----------------------------------------------------------------------
# Copyright (c) 2016 Inria/iMinds by Arthur Garnier
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and/or hardware specification (the "Work") to
# deal in the Work without restriction, including ... | open-multinet/docker-am | gcf_docker_plugin/testbed.py | Python | mit | 61,260 | [
"VisIt"
] | 0b24679ad48278439e8cc3f1edbe3c727d9c23eed57830dbe77958f0e65fd06b |
# This file is part of BurnMan - a thermoelastic and thermodynamic toolkit for the Earth and Planetary Sciences
# Copyright (C) 2012 - 2015 by the BurnMan team, released under the GNU
# GPL v2 or later.
from __future__ import absolute_import
from os import path
import numpy as np
import scipy.optimize as opt
from sci... | sannecottaar/burnman | burnman/eos/dks_liquid.py | Python | gpl-2.0 | 24,571 | [
"Avogadro",
"DIRAC"
] | 68e70d6dae46b6810edba8dd8accbe96750fcc6ce853d5244fc438424e6e80e6 |
# -*- coding: utf-8 -*-
import os
import moose
print( "[INFO ] Using moose from %s" % moose.__file__ )
import numpy as np
import moose.fixXreacs as fixXreacs
def countCrossings( plot, thresh ):
vec = moose.element( plot ).vector
print( vec )
# print (vec[:-1] <= thresh)
return sum( (vec[:-1] < thresh)... | upibhalla/moose-core | tests/python/test_Xreacs2.py | Python | gpl-3.0 | 1,798 | [
"MOOSE"
] | 12c0c540070db10e98e7d62058de17a22fae0538b5f505f1d19a4694a0da8a27 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-compute | tests/unit/gapic/compute_v1/test_target_tcp_proxies.py | Python | apache-2.0 | 102,857 | [
"Octopus"
] | 35e8d7123273c4d6786dceb2861041878d8e310b9143e66397bc821b9fe11325 |
# Copyright (c) 2016 Adafruit Industries
# Author: Brian Norman
#
# Heavily based on https://github.com/adafruit/micropython-adafruit-pca9685/blob/master/pca9685.py
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to... | gingemonster/PCA9685-Python-Microbit | servo.py | Python | mit | 2,408 | [
"Brian"
] | 6381aa45b99877324e326ffacded24cbdafb08733279b69b6782e43a7f1eaddf |
from ase import *
from ase.structure import bulk
import numpy as np
from gpaw import *
from gpaw.mpi import serial_comm
from gpaw.test import equal
from gpaw.xc.rpa_correlation_energy import RPACorrelation
calc = GPAW(h=0.18, xc='LDA', kpts=(4,4,4), #usesymm=None,
nbands=15, eigensolver='cg',
... | qsnake/gpaw | gpaw/test/rpa_energy_Kr.py | Python | gpl-3.0 | 642 | [
"ASE",
"GPAW"
] | 150d5b4dc9405cefb75bb62a2cf38a3d69f89351dac7e6512a790063e473667b |
# First a documentation string to describe the example
"""An example script demonstrating an NVT MD simulation with Asap.
This example runs a molecular dynamics simulation on a small copper
cluster in the NVT ensemble, i.e. with constant particle number,
constant volume and constant temperature. It uses Langevin dyna... | auag92/n2dm | Asap-3.8.4/Examples/MD_Cluster3.py | Python | mit | 2,004 | [
"ASE",
"CRYSTAL"
] | 6f1b05f52a70869475f8a7e24476d3268ff1417121f8dcaa2e8ba0c95f8d6c3b |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module defines classes for point defects.
"""
__author__ = "Bharat Medasani, Nils E. R. Zimmermann"
__copyright__ = "Copyright 2011, The Materials Pr... | gpetretto/pymatgen | pymatgen/analysis/defects/point_defects.py | Python | mit | 90,715 | [
"CRYSTAL",
"GULP",
"VASP",
"VTK",
"pymatgen"
] | 1f7e8cbe10838ac988df0368201a50254335453ab93b7ca5acccf8377a97f635 |
# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""Integration tests for :mod:`iris.analysis.trajectory`."""
# import iris tests first so that some things can be initialised ... | rcomer/iris | lib/iris/tests/integration/test_trajectory.py | Python | lgpl-3.0 | 11,733 | [
"NetCDF"
] | fa0b03252a591041c16f63fcb8344513a789891dbc7573bfba9fa0dab024c061 |
#
# The Multiverse Platform is made available under the MIT License.
#
# Copyright (c) 2012 The Multiverse Foundation
#
# Permission is hereby granted, free of charge, to any person
# obtaining a copy of this software and associated documentation
# files (the "Software"), to deal in the Software without restrict... | longde123/MultiversePlatform | client/Scripts/Compositor.py | Python | mit | 11,312 | [
"Gaussian"
] | 135c1d1ae23515f024a152ec86a39a4363fc84bcf654db55b0ecdf6a7d12061c |
import os
try:
import cPickle as pickle
except:
import pickle
from PIL import Image
from subprocess import Popen
import numpy as np
from numpy.lib.stride_tricks import as_strided
import os
import gzip
from random import shuffle
from collections import OrderedDict
import inspect
import h5py
import sys
from skima... | MarvinBertin/Theano-Lights | toolbox.py | Python | mit | 26,985 | [
"Gaussian"
] | a547248c6d35c5930d094ca4b98c6b06b86f9b7d8ce8f40846f3cb9752833e0d |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
import sys
sys.path.append('../../src')
sys.path.append('./src')
import os, random, functools, glob, time
import numpy as np
import torch, torchvision
from PIL import Image, ImageOps
import cv2
import swl.language_processing.util as swl_langproc_util
import text_data
impo... | sangwook236/sangwook-library | python/test/language_processing/text_data_test.py | Python | gpl-2.0 | 72,993 | [
"Gaussian"
] | 2d967a4666a76865fe28af56a6767ff9c89a5ba89778f9b579e82517bd9079d3 |
# -*- coding:Utf-8 -*-
"""
.. currentmodule:: pylayers.antprop.antenna
.. autosummary::
:members:
"""
from __future__ import print_function
import doctest
import os
import glob
import re
import pdb
import sys
import numpy as np
import scipy.linalg as la
import matplotlib.pylab as plt
from scipy import io
from mat... | pylayers/pylayers | pylayers/antprop/antenna.py | Python | mit | 183,342 | [
"Gaussian",
"Mayavi"
] | 6ec2fe804371a8ca4231a5ebe916a5d40d8282af944d6e4b796bc189d2207aad |
# -*- coding: utf-8 -*-
#
# Natural Language Toolkit: Snowball Stemmer
#
# Copyright (C) 2001-2013 NLTK Project
# Author: Peter Michael Stahl <pemistahl@gmail.com>
# Peter Ljunglof <peter.ljunglof@heatherleaf.se> (revisions)
# Algorithms: Dr Martin Porter <martin@tartarus.org>
# URL: <http://nltk.org/>
# For li... | TeamSPoon/logicmoo_workspace | packs_sys/logicmoo_nlu/ext/pldata/nltk_3.0a3/nltk/stem/snowball.py | Python | mit | 146,853 | [
"ASE"
] | a52a6933f4795ae3ca1af3a9fcdff5d0addd34dc66ec27b06cbc9bcf60c703de |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# __BEGIN_LICENSE__
# Copyright (c) 2009-2013, United States Government as represented by the
# Administrator of the National Aeronautics and Space Administration. All
# rights reserved.
#
# The NGT platform is licensed under the Apache License, Version 2.0 (the
# "Lic... | oleg-alexandrov/StereoPipeline | src/asp/Tools/bathy_threshold_calc.py | Python | apache-2.0 | 6,071 | [
"Gaussian"
] | d3b20864db29292f324118232764cdf684d67a277d1caa86412b52f8654f135b |
# Copyright (c) 2013, Web Notes Technologies Pvt. Ltd. and Contributors
# License: GNU General Public License v3. See license.txt
from __future__ import unicode_literals
import frappe
import frappe.utils
import json
from frappe.utils import cstr, flt, getdate, comma_and
from frappe import _
from frappe.model.mapper im... | gangadhar-kadam/smrterp | erpnext/selling/doctype/sales_order/sales_order.py | Python | agpl-3.0 | 16,379 | [
"VisIt"
] | a1d11b5e7a46dc8503396b01b6df6e32f5193473258f47c02ecca96b3ec0cad9 |
# $Id$
# Hop --- a framework to analyze solvation dynamics from MD simulations
# Copyright (c) 2009 Oliver Beckstein <orbeckst@gmail.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either... | Becksteinlab/hop | hop/trajectory.py | Python | gpl-3.0 | 36,579 | [
"CHARMM",
"MDAnalysis",
"VMD"
] | fd7f379a5babdd01204a67b9c67f321780e95d7513160d3f130b1a73d552a260 |
# constants.py, constants available in Calculate,
# by Reinier Heeres <reinier@heeres.eu>
# Most of these come from Wikipedia.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 ... | godiard/sugarlabs-calculate | constants.py | Python | gpl-2.0 | 1,661 | [
"Avogadro",
"DIRAC"
] | f1d28c3106f15fdccde1473edd6f7e7df6d09bd9142c807e383779fce13884e3 |
# -*- coding: utf-8 -*-
"""
Quickly setup a Pyccel source to work with pyccel.
"""
# TODO this file has not been refactored yet
import sys
import os
import argparse
from os import path
from pyccel import __version__ as __display_version__
from pyccel.codegen.utilities_old import build_file
from pyccel.codegen.... | ratnania/pyccel | pyccel/commands/build.py | Python | mit | 7,139 | [
"VisIt"
] | a6b0c5ec0d5729a5156a9c3fff11c40ff01cc56948b8a18693a5184fd7d7bd27 |
#!/usr/bin/env python3
import math
import warnings
from copy import deepcopy
from typing import Any, Optional
import torch
from torch import Tensor
from ..distributions import MultivariateNormal, base_distributions
from ..lazy import ZeroLazyTensor
from ..utils.warnings import GPInputWarning
from .likelihood import ... | jrg365/gpytorch | gpytorch/likelihoods/gaussian_likelihood.py | Python | mit | 8,164 | [
"Gaussian"
] | 99890ecabe17ec2f8daf844d3450625ecff5aff5192dd9673698b2e313827e7e |
import json
import base64
import io
import logging
import posixpath
import stat
import tarfile
import zipfile
from pymisp import MISPEvent, MISPObject, MISPAttribute
from pymisp.tools import make_binary_objects
from collections import OrderedDict
log = logging.getLogger(__name__)
misperrors = {'error': 'Error'}
modu... | MISP/misp-modules | misp_modules/modules/import_mod/cuckooimport.py | Python | agpl-3.0 | 26,979 | [
"Galaxy"
] | 1a01ca2781475649dac2c037216cbf417dc5d61f8818cf78d940e48e5b20025d |
"""
===================
Canny edge detector
===================
The Canny filter is a multi-stage edge detector. It uses a filter based on the
derivative of a Gaussian in order to compute the intensity of the gradients.The
Gaussian reduces the effect of noise present in the image. Then, potential
edges are thinned dow... | bennlich/scikit-image | doc/examples/plot_canny.py | Python | bsd-3-clause | 1,634 | [
"Gaussian"
] | 7fa391bbbacdfae2806dbd7b83adc5d60729254a366f8096387c5934882a3e79 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import platform
from matplotlib.font_manager import FontProperties
from matplotlib.ticker import FormatStrFormatter
"""
This module provides classes for plot... | setten/pymatgen | pymatgen/analysis/pourbaix/plotter.py | Python | mit | 34,814 | [
"pymatgen"
] | bca3296cda6cb6d2bf99b03b36861abbf0c4bb8b49955730a9602eabb7204764 |
""" PEP
PEP ( Policy Enforcement Point ) is the front-end of the whole Policy System.
Any interaction with it must go through the PEP to ensure a smooth flow.
Firstly, it loads the PDP ( Policy Decision Point ) which actually is the
module doing all dirty work ( finding policies, running them, merging their
... | andresailer/DIRAC | ResourceStatusSystem/PolicySystem/PEP.py | Python | gpl-3.0 | 7,786 | [
"DIRAC"
] | 4aff6c1abe8bd45d1f4fe5084b8b05f9a1b15aadc706802f7923f2da0ab5b8e6 |
import os, sys
from virus_stability import virus_stability
class run_mutator():
def __init__(self, split_number, structure):
try:
self.sequence_file = open(split_number + "_sequences_file.txt", 'r')
except:
print("That sequence file does not exist in the current directory")... | blab/stability | augur/mutator/mutate_everything_2YP7/foldx_essentials/run_mutator_cluster.py | Python | agpl-3.0 | 4,401 | [
"FoldX"
] | 2df8282da1a864bd25353a32a36b373c3c83d9add2ea3ccb3722536d5cc6c51d |
"""
===============
GMM covariances
===============
Demonstration of several covariances types for Gaussian mixture models.
See :ref:`gmm` for more information on the estimator.
Although GMM are often used for clustering, we can compare the obtained
clusters with the actual classes from the dataset. We initialize th... | shyamalschandra/scikit-learn | examples/mixture/plot_gmm_covariances.py | Python | bsd-3-clause | 4,752 | [
"Gaussian"
] | 70b222df10432fb771bc0e2669134213e9f66f489410a16a9831ff64acccd8a5 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/py-rseqc/package.py | Python | lgpl-2.1 | 1,892 | [
"pysam"
] | e333cfd01be370b37f7d84eb1c0e387e156af585bcd45933b347b23d7046aaf0 |
########################################################################
# File: RemoveReplica.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/03/25 07:45:06
########################################################################
""" :mod: RemoveReplica
===================
.. module: RemoveReplica
... | DIRACGrid/DIRAC | src/DIRAC/DataManagementSystem/Agent/RequestOperations/RemoveReplica.py | Python | gpl-3.0 | 9,221 | [
"DIRAC"
] | eb857145ab9899fb898f8d4271b2fc6ee487a7585a93efe7f78f29c554a9a894 |
import os
import sys
import json
import zlib
import types
import logging
import threading
import collections
import multiprocessing
import synapse.link as s_link
import synapse.common as s_common
import synapse.dyndeps as s_dyndeps
import synapse.telepath as s_telepath
import synapse.lib.cell as s_cell
import synapse... | vivisect/synapse | synapse/daemon.py | Python | apache-2.0 | 24,450 | [
"NEURON"
] | 2220caf3a54fcd340e8077e578bcb2719b36caa169782b5cf0fa93df94fc664f |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | CDSherrill/psi4 | psi4/driver/psifiles.py | Python | lgpl-3.0 | 10,974 | [
"Psi4"
] | ac7832bdc6eee6d1224a2dfcbda2426cd1e3326e8f99c0f94184bbc1e751081d |
#!/usr/bin/env python
import numpy as np
from scipy import interpolate
from glob import glob
from VOTUtils import initLogger,checkParams
class VOTSpectrum:
'''This class takes a spectral shape and returns the spectral shape
along with the absorbed spectral shape. You can either pass an
array of energie... | kialio/VHEObserverTools | VOTSpectrum.py | Python | bsd-2-clause | 13,143 | [
"Galaxy"
] | 6ea1d431be70e8461f274e101eadb147ff7070f1aa62bc17986e4556bcb7fd1c |
import os
import MooseDocs
from MooseDocs.testing import MarkdownTestCase
class TestBibtexExtension(MarkdownTestCase):
"""
Tests that Bibtex is working correctly.
"""
def readGold(self, name):
"""
The parsed markdown contains a path to ".../moose/docs/bib/moose.bib".
This puts in the correct path a... | paulthulstrup/moose | docs/tests/bibtex/test_bibtex.py | Python | lgpl-2.1 | 2,093 | [
"MOOSE"
] | 1c1072f9c89ccf62ba41232c4b2b16cdb44ff7abf0b9d8cbec5059b78417e2e5 |
"""
Tests for ORA (Open Response Assessment) through the LMS UI.
"""
import json
from unittest import skip
from bok_choy.promise import Promise, BrokenPromise
from ..pages.lms.peer_confirm import PeerConfirmPage
from ..pages.lms.auto_auth import AutoAuthPage
from ..pages.lms.course_info import CourseInfoPage
from ..p... | htzy/bigfour | common/test/acceptance/tests/test_ora.py | Python | agpl-3.0 | 15,617 | [
"VisIt"
] | 2c7b1cef2782d2963afa4455d56969e30641ccbe07bff3d97136711b8e979d21 |
from .spi_rack import SPI_rack
from .chip_mode import ADF4351_MODE, ADF4351_SPEED, MAX521x_MODE, MAX521x_SPEED, BICPINS_SPEED
import numpy as np
class S5i_module(object):
"""S5i module interface class
This class does the low level interfacing with the S5i RF generator module.
It requires an SPI Rack objec... | peendebak/SPI-rack | spirack/S5i_module.py | Python | mit | 9,976 | [
"ADF"
] | b43ab15c21c82e11ec6650a0af8d8c84691aab0118813be35aa56d06e4d75d2c |
import unittest
from test.asserting.ast import get_fixture_path
from vint.ast.parsing import Parser
from vint.ast.node_type import NodeType
from vint.ast.traversing import traverse, SKIP_CHILDREN
from vint.linting.lint_target import LintTargetFile
FIXTURE_FILE = get_fixture_path('fixture_to_traverse.vim')
class Tes... | Kuniwak/vint | test/unit/vint/ast/test_traversing.py | Python | mit | 4,589 | [
"VisIt"
] | 4f25f72c05aabcc159bf79af790e5c6d3fe0917c36c915ec3cbc1368e8993b12 |
"""
Linter classes containing logic for checking various filetypes.
"""
import ast
import io
import os
import re
import textwrap
from xsslint import visitors
from xsslint.reporting import ExpressionRuleViolation, FileResults, RuleViolation
from xsslint.rules import RuleSet
from xsslint.utils import Expression, Parse... | cpennington/edx-platform | scripts/xsslint/xsslint/linters.py | Python | agpl-3.0 | 67,952 | [
"VisIt"
] | 96d1f6beec6cc46eb219512009837fe282a685aeb7ffd434f631e6a60f4fc1c6 |
# Copyright (C) 2015-2021 S[&]T, The Netherlands.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice,
# this list of condi... | stcorp/harp | python/_harppy.py | Python | bsd-3-clause | 60,040 | [
"NetCDF"
] | 9a76005b09213344b46a4c9026de470f1ca782a50a7864cd19f63c724b83ae05 |
# -*- coding: utf-8 -*-
# Copyright 2016-2021 The pyXem developers
#
# This file is part of pyXem.
#
# pyXem is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your optio... | pycrystem/pycrystem | pyxem/utils/radial_utils.py | Python | gpl-3.0 | 25,535 | [
"Gaussian"
] | 7475a0924258e71360bd6582ecb941cec5bcbd0928f6e58b4bd05e875b52e86f |
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/portrait-shadow-manipulation | utils.py | Python | apache-2.0 | 22,340 | [
"Gaussian"
] | 87df843f6bf549c5009eef3d9a2a158a5d64fc3b0b51fd482eee2576ddddb642 |
import os
from ddapp import lcmUtils
import ddapp.objectmodel as om
import ddapp.applogic as app
from ddapp import transformUtils
from ddapp.debugVis import DebugData
from ddapp import ioUtils
from ddapp import filterUtils
from ddapp.shallowCopy import shallowCopy
from ddapp import vtkAll as vtk
from ddapp import visu... | RussTedrake/director | src/python/ddapp/drakevisualizer.py | Python | bsd-3-clause | 14,593 | [
"VTK"
] | 9b192a4c8cb9fb35801f377196dd38c64fcca0250e0028260cff779fbbeb5333 |
# (c) 2013-2014, Michael DeHaan <michael.dehaan@gmail.com>
# (c) 2015 Toshio Kuratomi <tkuratomi@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either... | ownport/ansiblite | src/ansiblite/executor/module_common.py | Python | gpl-3.0 | 35,771 | [
"VisIt"
] | 4768bc2b38850f3790b3eac5111fdbc9744af0b913ef3c748dd725b3a9c49159 |
#!/usr/bin/env python
# Copyright 2008-2015 Nokia Networks
# Copyright 2016- Robot Framework Foundation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.or... | bikashgupta11/javarobot | src/main/resources/jython/Lib/robot/run.py | Python | gpl-3.0 | 31,766 | [
"VisIt"
] | 7b5cf9b377a2f0d76f2cea583ea0f8f55f399cc1a84ec76ed1407a5219480bea |
import os
import re
import time
import itertools
import subprocess
import random
import numpy as np
from .._population import Population
from pychemia import pcm_log
from pychemia.code.abinit import AbinitInput, AbinitOutput
from pychemia.utils.mathematics import gram_smith_qr, gea_all_angles, gea_orthogonal_from_angle... | MaterialsDiscovery/PyChemia | pychemia/population/orbitaldftu/_population.py | Python | mit | 35,753 | [
"ABINIT",
"NetCDF"
] | 7211f973e0463169a717b7fc033df6e999b6376a8da9c216030c95fc20ca879e |
# -*- coding: utf-8 -*-
'''
Created on 29/04/2014
@author: Alex Montes Barrios
'''
import sys
import os
import sqlite3 as lite
import urllib
import urllib2
import cookielib
import base64
import pprint
import re
import CustomRegEx
import urlparse
import xml.dom.minidom as minidom
import HTMLParser
import CustomRegEx
... | pybquillast/xkAddonIDE | basicFunc.py | Python | gpl-3.0 | 19,074 | [
"CASINO"
] | 85115c4e9075e40a11423c0da59d07e98956bc7489ba2939a95cab6d594e9184 |
# -*- coding: utf-8 -*-
"""
Example ``Document`` with completion suggester.
In the ``Person`` class we index the person's name to allow auto completing in
any order ("first last", "middle last first", ...). For the weight we use a
value from the ``popularity`` field which is a long.
To make the suggestions work in di... | 3lnc/elasticsearch-dsl-py | examples/completion.py | Python | apache-2.0 | 2,482 | [
"Brian"
] | afc732c8c1d7bf4ef6107125da72a8218dd02fe592bcdb22322409445618e8d0 |
#!usr/bin/env python
#encoding: utf-8
__author__="luzhijun"
'''
cma restart test
'''
import numpy as np
from scipy import ndimage
import matplotlib.pyplot as plt
#Data:
x = np.linspace(0,2*np.pi,100)
f = np.sin(x) + .02*(np.random.rand(100)-.5)
#Normalization:
dx = x[1] - x[0] # use np.diff(x) if x is not uniform
dxdx ... | luzhijun/Optimization | 傅里叶拟合/fourier/cha.py | Python | apache-2.0 | 1,037 | [
"Gaussian"
] | 5a1d37c2db6cf2c187e91e77983e1837fb59f59365a9debe1ae394b5fbbd92ae |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/procrouting/dft_funcs/dict_builder.py | Python | lgpl-3.0 | 16,139 | [
"Psi4"
] | ce92e33fbd8e19e725d2bd206bab99162d2593bf783d5927831d768602799ca2 |
from validx import Dict, Str
from enum import IntFlag, IntEnum
from .animation import Animation
from .utils.validator import UInt8, UInt16
class AIOptions(IntFlag):
NONE = 0
FLAG_1 = 0x1
FLAG_2 = 0x2
FLAG_3 = 0x4
FLAG_4 = 0x8
FLAG_5 = 0x10
FLAG_6 = 0x20
FLAG_7 = 0x40
FLAG_8 = 0x80... | omf2097/pyomftools | omftools/pyshadowdive/afmove.py | Python | mit | 8,999 | [
"BLAST"
] | ba9ba6a9b04f3683f07238f49a9291ed01f78862d23588a6edbe1d411f483e13 |
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | scottcunningham/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 21,331 | [
"Galaxy"
] | 02b5d3c1f965081f345b4ce58ff9060ea4884645cf5ef6f3bdf792a31c5d1fad |
from pymatgen.core.periodic_table import Element # Call elements by atomic #
class ElementList(object):
"""
Class for creating element lists and ranges
By default the first list created is in order of atomic number
Args:
N/A
"""
#start_fold - ElementList
def __init__(self, atom_num_lst=[[]]):
se... | raulf2012/pourbaix_pymatgen | element_list.py | Python | mit | 3,455 | [
"pymatgen"
] | 78a536d2629a7b84295d12243c91f7c0254b496fc67ae1a80605ff5d11fe0af5 |
###############################################################################
# import Python modules
# import 3rd party modules
from numpy import *
#from pylab import *
# import user modules
from acalc import *
###############################################################################
"""
20070202 HI: This... | jjdmol/LOFAR | CEP/Calibration/ExpIon/src/mpfit.py | Python | gpl-3.0 | 100,859 | [
"Gaussian"
] | 4adf0728d3143d7ce13773f8ce67b9de84f246ab82968904bbc94ee049291fc7 |
# -*- coding: utf-8 -*-
"""Some utility functions"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
#
# License: BSD (3-clause)
import warnings
import logging
import time
from distutils.version import LooseVersion
import os
import os.path as op
from funct... | yousrabk/mne-python | mne/utils.py | Python | bsd-3-clause | 67,241 | [
"Mayavi"
] | a5dd33f8d4df868cb8dc4f68ce3eca913d1f15700f4ae55a2852e763f9d0df6b |
import json
import os
import time
from SWParser import *
from SWPlugin import SWPlugin
import logging
logger = logging.getLogger()
import threading
rival_name = { #there may be more, given alt versions of rivals
'5001': "(R) Gready",
'5002': "(R) Morgana",
'5003': "(R) Edmund",
'5004': "(R) Volta",
... | lstern/SWProxy-plugins | plugins/ArenaLogger.py | Python | lgpl-3.0 | 7,293 | [
"CRYSTAL"
] | 6177ff65daf32f5c6f1b64ee646a8e1ef9bd96a1ae58815928c776bd40d8d925 |
""" The RucioFileCatalogClient is a class that allows to interface Dirac with Rucio
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
__RCSID__ = "$Id"
import os
import uuid
import datetime
from copy import deepcopy
import DIRAC
from DIRAC import S_OK, S... | ic-hep/DIRAC | src/DIRAC/Resources/Catalog/RucioFileCatalogClient.py | Python | gpl-3.0 | 27,128 | [
"DIRAC"
] | 4915b801b5ecad30c02992ffb749a6aecfeee59d7a80eb7ac5647b378e9361bd |
#!/usr/bin/env python
import sys
import os
import os.path
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('--lammps', type=str, nargs='+',
help='directories containing LAMMPS simulation files', default=[])
parser.add_argument('--espp', type=str, nargs='+',
... | pdebuyl/cg_md_polymerization | code/analyse_chain.py | Python | bsd-3-clause | 3,137 | [
"ESPResSo",
"LAMMPS"
] | 3f327769a65c8bd34ef1cf5d68b9bd8621fec3307a2726d0da1967bbf47a3594 |
import copy
import warnings
from collections.abc import Iterable, Iterator, Generator
import numpy as np
import scipy
import scipy.optimize
import scipy.stats
from astropy import log
import matplotlib.pyplot as plt
from stingray.exceptions import StingrayError
from stingray.gti import bin_intervals_from_gtis, check_g... | abigailStev/stingray | stingray/crossspectrum.py | Python | mit | 97,663 | [
"Gaussian"
] | bb7182c05831a90d4adab0e11328d72f74f3778edb2ba4693d72b4d40d8c3239 |
# -*- coding: utf-8 -*-
import datetime
from travel_penguin.model.act import CommandType, ActionType
from travel_penguin.travel.penguin_db import PenguinDb
from travel_penguin.travel.penguin_act import PenguinAct
from travel_penguin.travel.penguin_nlu import PenguinNLU
from travel_penguin.travel.penguin_nlg import Peng... | icoxfog417/TravelPenguinBot | travel_penguin/travel/penguin.py | Python | mit | 1,941 | [
"VisIt"
] | 0533cccdcfbdb26b95732c74ab367b2d858374530f58d2f06c5f3d101b10822d |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | harterj/moose | python/MooseDocs/test/extensions/test_core.py | Python | lgpl-2.1 | 5,599 | [
"MOOSE"
] | dca133c53dd1fd6d61c2f9db407f587d54dad428c46c865a1a20b2dbf4152e12 |
"""
ElasticSearch wrapper
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import logging
from cmreslogging.handlers import CMRESHandler
from DIRAC.Resources.LogBackends.AbstractBackend import AbstractBackend
class ElasticSearchBack... | ic-hep/DIRAC | src/DIRAC/Resources/LogBackends/ElasticSearchBackend.py | Python | gpl-3.0 | 3,243 | [
"DIRAC"
] | 4e67f4df696217b8745a033ea747edcbae4850168f15b049c95a1f72dee0bf34 |
#!/usr/bin/python -O
############################################################################
# Copyright (c) 2015 Saint Petersburg State University
# Copyright (c) 2011-2014 Saint Petersburg Academic University
# All Rights Reserved
# See file LICENSE for details.
#################################################... | INNUENDOWEB/INNUca | src/SPAdes-3.10.1-Linux/share/spades/spades_pipeline/corrector_logic.py | Python | gpl-3.0 | 2,464 | [
"BWA"
] | a7d41cd4c77a2200704906a3718085ca1e2f6e17ddd6c024856edf7057204521 |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, subprocess, sys, glob, string
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','description','copyright','... | ktiniatros/TTS-iOS7 | build.py | Python | apache-2.0 | 6,802 | [
"VisIt"
] | a62ae51f319d67474b446456ddf2fe0306ef8ffd413f144b305f272a5fc0fdf5 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi4/psi4 | psi4/driver/qcdb/molpro_basissets.py | Python | lgpl-3.0 | 196,834 | [
"Psi4"
] | 0503eba0a260889df358f313e741e7ca004fb19f91c685a8f7672485134da21d |
#!/usr/bin/python
from numpy import *
from scipy import *
from scipy.special import *
from scipy import optimize
from scipy import signal
from operator import itemgetter
import re
import os
import helplib as hl
from math import sqrt
from math import log
#now for the interesing part: we only load the matplotlib.py... | nano-bio/fitlib | fitlib.py | Python | bsd-3-clause | 12,142 | [
"Gaussian"
] | cae213981c5e75853d2e0d5a7f260555caebcae749aaaf4aeedba7be276df710 |
# Copyright (c) 2016-present, Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed... | davinwang/caffe2 | caffe2/python/toy_regression_test.py | Python | apache-2.0 | 3,493 | [
"Gaussian"
] | 1558b5fe78ba8138add19b54618723cc91ae7e8435747cadc08b3a24fc3d896c |
"""Script to migrate the meta.yaml files
Script to migrate the meta.yaml files when the schema changes. Edit
the callback function at the bottom of the file.
"""
import os
import glob
# pylint: disable=redefined-builtin
from toolz.curried import pipe, valmap, itemmap, do, get, map
import yaml
def get_path():
... | wd15/chimad-phase-field | _data/migrate_yaml.py | Python | mit | 2,475 | [
"MOOSE"
] | d31568151771117317ed42e290605f434d59dde270c8f0620cc15fcdd26251f4 |
# Import the necessary packages for the correct calculations
from numpy import pi
import numpy as np
### IMPORTANT NOTE: in your functions, always use the functions provided by numpy or compatible packages. For that, use e.g. np.sin(x), np.exp(x) etc.
# This one is Gaussian with fixed polarization (spatially uniform ... | ivan-galinskiy/ray-opto-tweezer-sim | beam_profiles.py | Python | gpl-2.0 | 4,232 | [
"Gaussian"
] | 4bd279e8bdc4e80a4c9e8982248b013f8e3115ac997274c1e36cb54e2302f8a2 |
"""
Extended docstrings for functions.py
"""
pi = r"""
`\pi`, roughly equal to 3.141592654, represents the area of the unit
circle, the half-period of trigonometric functions, and many other
things in mathematics.
Mpmath can evaluate `\pi` to arbitrary precision::
>>> from mpmath import *
>>> mp.dps = 50; m... | GbalsaC/bitnamiP | venv/lib/python2.7/site-packages/sympy/mpmath/function_docs.py | Python | agpl-3.0 | 276,840 | [
"Gaussian"
] | 020dd05fd84dc20e1f9121e34f50464819f9371788d2b3e681a871d1f6660a0f |
# coding=utf-8
import unittest
"""811. Subdomain Visit Count
https://leetcode.com/problems/subdomain-visit-count/description/
A website domain like "discuss.leetcode.com" consists of various subdomains.
At the top level, we have "com", at the next level, we have "leetcode.com",
and at the lowest level, "discuss.leetc... | openqt/algorithms | leetcode/python/ac/lc811-subdomain-visit-count.py | Python | gpl-3.0 | 3,216 | [
"VisIt"
] | c2683113af58ad6dc102f69b7545a909e063004c49b6b05b8dd79e019d164a10 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (C) 2014 The ProteinDF development team.
# see also AUTHORS and README if provided.
#
# This file is a part of the ProteinDF software package.
#
# The ProteinDF is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Publ... | ProteinDF/ProteinDF_bridge | scripts/brd2pdb.py | Python | gpl-3.0 | 2,341 | [
"Amber"
] | 38e137aad729fd14fcc98accc8c39681e5aadda5734b8ef64d6486ad42c5f596 |
#David Hickox
# Question 1
car = input("What kind of car do you drive?")
if car.lower() == "toyota" or car.lower() == "honda":
msg = "you drive a fuel efficient car!"
else:
msg = "you ruin the enviroment"
print(msg)
# Question 2
name = input("What is your name?")
savings = float(input("What is your savi... | dwhickox/NCHS-Programming-1-Python-Programs | Chap 3/ElifWorkSheet.py | Python | mit | 2,563 | [
"VisIt"
] | 0545341c35a2adfebaaeea011b6edb904588a216264011908b14a42d97d74202 |
#
# AtHomePowerlineServer - networked server for CM11/CM11A/XTB-232 X10 controllers
# Copyright © 2014, 2021 Dave Hocker
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the... | dhocker/athomepowerlineserver | Version.py | Python | gpl-3.0 | 557 | [
"xTB"
] | f0237c120a678a508c7758492231a48a19c838d39615919f8f7d7ee7938ed35c |
import numpy as np
import matplotlib.pyplot as plt
import sys
# Add the PyRsw tools to the path
# At the moment it is given explicitely.
# In the future, it could also be added to the
# pythonpath environment variable
sys.path.append('../src')
import Steppers as Step
import Fluxes as Flux
from PyRsw import Simulation... | PyRsw/PyRsw | examples/example_2D_geoadjust.py | Python | mit | 2,568 | [
"Gaussian"
] | f40d3d17bd9725d0b047384eb08e9daabd241725d45bff65526e1ea2d03bfed6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#from xml.dom import minidom
# -> elementTree ?
import re
#from utils import sanitize
class XmlGW():
"""
Class for xml objects
. you want to create a xml wrapper for galaxy from any program help
"""
def __init__(self, mybigdict, vprog, vtool):
... | remyd1/XMLparser-wrapper | gaclass/wrapper_galaxy_class.py | Python | apache-2.0 | 16,952 | [
"Galaxy"
] | b6b611a9c52458d8b29e3b8f6e378703da2735f12794de29d7a943c0c4162b80 |
"""
==========================================
Statistical functions (:mod:`scipy.stats`)
==========================================
.. module:: scipy.stats
This module contains a large number of probability distributions as
well as a growing library of statistical functions.
Each univariate distribution is an insta... | mortonjt/scipy | scipy/stats/__init__.py | Python | bsd-3-clause | 8,450 | [
"Gaussian"
] | 4ac849c79c4854750b5c6bef81c3c98bf89546b87ba5817991a33fa5aee09019 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/r-affypdnn/package.py | Python | lgpl-2.1 | 1,690 | [
"Bioconductor"
] | 6cd82eca72790c913f935d437b12cf2707ed867da52ad3cb935fb1579e4c9147 |
import matplotlib.pyplot as plt
import numpy as np
from skimage import io,color,data,filters,exposure,util
#plt.switch_backend('qt5agg')
def pseudocolor():
image=io.imread('timg.jpeg')
imagergb=image.copy()
imagergb[:,:,0]=np.interp(image[:,:,0],[0,50,100,150,200,255],[0,0,0,55,155,255])
imagergb[:,:,... | xingnix/learning | imageprocessing/python/6/colorimage.py | Python | gpl-3.0 | 6,608 | [
"Gaussian"
] | 013c6a1a1ad6a10a7728135d8e4eec337e4d44f10379f478fd174995fd92deef |
# 05.06.2007, c
# last revision: 05.06.2007
input_name = 'input/le.py'
output_name = 'test_le.vtk'
from testsBasic import TestInput
class Test( TestInput ):
pass
| certik/sfepy | tests/test_input_le.py | Python | bsd-3-clause | 168 | [
"VTK"
] | 428bd21b56b2e69c3c6eefd909094b3f8f2159e5f4b63e58eb1a33faca7bf08a |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
#
# Copyright (C) 2021 Stoq Tecnologia <http://www.stoq.com.br>
# All rights reserved
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public License
# as published by the Free Software Foundation;... | stoq/stoq-server | stoqserver/api/resources/invoice.py | Python | gpl-2.0 | 3,006 | [
"VisIt"
] | ef8ce8f242b1a041efe5c4d25276ce37dbd74fd1f05df9713ccd54641c85261a |
import sys
import os
import shutil
import subprocess
if len( sys.argv ) == 2:
PG_DATA_DIR_DEFAULT = sys.argv[1]
else:
PG_DATA_DIR_DEFAULT = "/var/lib/postgresql/9.3/main"
PG_DATA_DIR_HOST = os.environ.get("PG_DATA_DIR_HOST", "/export/postgresql/9.3/main/")
PG_CONF = '/etc/postgresql/9.3/main/postgresql.conf'
... | afgane/docker-galaxy-stable | galaxy/export_user_files.py | Python | mit | 5,491 | [
"Galaxy"
] | 253114a11192b1d11f91f473780d47d84f0f538e2699582caeb746b8839cccf8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
braggutils: utilities around the Bragg's law ($ n \lambda = 2 d sin \theta $)
"""
import warnings
import numpy as np
import logging
try:
import scipy.constants.codata as const
HAS_CODATA = True
h = const.value("Planck constant in eV s") # eV s
c = con... | maurov/xraysloth | sloth/utils/bragg.py | Python | bsd-3-clause | 9,341 | [
"CRYSTAL"
] | d56abab46960d430bca64f53a22527975324e6bb42cde3c13162986d36899e28 |
# Copyright (C) 2013 Jeremy S. Sanders
# Email: Jeremy Sanders <jeremy@jeremysanders.net>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# ... | veusz/veusz | veusz/utils/safe_eval.py | Python | gpl-2.0 | 5,382 | [
"VisIt"
] | a5e7be83eb89a6d47391af23ff90e956485022a5bb3584f15502c5b3ff24fd31 |
#
# This Source Code Form is subject to the terms of the Mozilla Public License,
# v. 2.0. If a copy of the MPL was not distributed with this file, You can
# obtain one at http://mozilla.org/MPL/2.0/.
#
# Copyright (c) 2015 Digi International Inc., All Rights Reserved.
#
from hamcrest import assert_that, ends_with, is... | brucetsao/XBeeZigBeeCloudKit | splinter_tests/test_dashboard_page.py | Python | mpl-2.0 | 7,060 | [
"VisIt"
] | 35fe77275b8bb7295479cc418d2b15fde6500939f7360b38e86dc2f18c3d741f |
# Dual annealing unit tests implementation.
# Copyright (c) 2018 Sylvain Gubian <sylvain.gubian@pmi.com>,
# Yang Xiang <yang.xiang@pmi.com>
# Author: Sylvain Gubian, PMP S.A.
"""
Unit tests for the dual annealing global optimizer
"""
from scipy.optimize import dual_annealing
from scipy.optimize._dual_annealing import E... | nmayorov/scipy | scipy/optimize/tests/test__dual_annealing.py | Python | bsd-3-clause | 12,820 | [
"VisIt"
] | 43f9384f84741bb231fc910417d7f9584b4c18a747a052bdfd38451b8abc8380 |
from lettuce import step, world
from questionnaire.features.pages.questions import QuestionListingPage
from questionnaire.features.pages.step_utils import create_user_with_no_permissions, assign, \
create_regional_admin_with_no_permissions
from questionnaire.features.pages.users import LoginPage
from questionnaire.... | eJRF/ejrf | questionnaire/features/question_regional_steps.py | Python | bsd-3-clause | 6,076 | [
"VisIt"
] | e0746f84ae6205655b1afae4c80f1420349e74ac50236e4c4885eff4e70d397e |
"""The WaveBlocks Project
This file contains the class which represents a homogeneous Hagedorn wavepacket.
@author: R. Bourquin
@copyright: Copyright (C) 2010, 2011, 2012, 2013, 2014, 2016 R. Bourquin
@license: Modified BSD License
"""
from numpy import zeros, complexfloating, array, eye, atleast_2d, angle, squeeze
... | WaveBlocks/WaveBlocksND | WaveBlocksND/HagedornWavepacket.py | Python | bsd-3-clause | 7,026 | [
"Gaussian"
] | 258e50078a8c2b1ab07f465eeee0f24178a977b70e03b4bc84340bf0a9e389b0 |
#
# File : building.py
# This file is part of RT-Thread RTOS
# COPYRIGHT (C) 2006 - 2015, RT-Thread Development Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of... | yongli3/rt-thread | tools/building.py | Python | apache-2.0 | 30,756 | [
"CDK"
] | 811009c3a48c15027606386ef2533dd86c7bff7e479a02676942e3ee901c4230 |
"""MCMC sampling methods."""
import logging
import numpy as np
logger = logging.getLogger(__name__)
# TODO: combine ESS and Rhat?, consider transforming parameters to allowed
# region to increase acceptance ratio
def eff_sample_size(chains):
"""Calculate the effective sample size for 1 or more chains.
Se... | HIIT/elfi | elfi/methods/mcmc.py | Python | bsd-3-clause | 16,593 | [
"Gaussian"
] | 7314e43855997115da31471e0852c9a73db5035c200fd61177add2f29ccd70c5 |
#
# libtcod 1.5.1 python wrapper
# Copyright (c) 2008,2009,2010 Jice & Mingos
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright... | KittyTristy/roguekit | libs/libtcodpy.py | Python | gpl-2.0 | 60,843 | [
"Amber"
] | 897118b13b134e54d610c8ba5bdd680aa2ab3a7b3287a9c800aa3843893feec9 |
# This file is part of wger Workout Manager.
#
# wger Workout Manager is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# wger W... | petervanderdoes/wger | wger/exercises/tests/test_muscles.py | Python | agpl-3.0 | 4,099 | [
"VisIt"
] | 658dc8114e5567beb7b4ee7196fb4264814ff80d0799915cf9f2a552d5ba320d |
#!/hadron/knippsch/Enthought/Canopy_64bit/User/bin/python
################################################################################
#
# Author: Christopher Helmes (helmes@hiskp.uni-bonn.de)
# Date: Februar 2015
#
# Copyright (C) 2015 Christopher Helmes
#
# This program is free software: you can redistribute i... | chjost/analysis-code | plot_lqmd.py | Python | gpl-3.0 | 5,803 | [
"Gaussian"
] | bf9fd176690e207b933b1f44765bcccd16e0b647b597d8ce615bb28867825f17 |
from __future__ import print_function, division
import sys, numpy as np
from numpy import concatenate, ravel, diagflat, zeros, einsum, stack
from pyscf.nao import scf
from copy import copy
class qchem_inter_rf(scf):
""" Quantum-chemical interacting response function """
def __init__(self, **kw):
""" Constru... | gkc1000/pyscf | pyscf/nao/qchem_inter_rf.py | Python | apache-2.0 | 3,401 | [
"PySCF"
] | a840eeb01a243252b05fe715c8100fffe3f28315b809f4ec1b7f4cc876a29b59 |
import os
import pickle
import re
import sys
from Queue import Queue
from zipfile import ZipFile
DIR = 'pwd'
files = []
for filename in os.listdir(DIR):
files.append(filename)
prev = {}
in_count = {}
out_edge = {}
f = open('dict', 'r')
password_dict = pickle.load(f)
f.close()
for filename in files:
f = ope... | Qwaz/solved-hacking-problem | SSCTF/2016/Crypto&Exploit/Chain Rule/pwd.py | Python | gpl-2.0 | 2,519 | [
"VisIt"
] | 44e9bbb1b909113db28d85c7819f9b34b6c5d5b94a4ea29aff8b2657b398cefd |
# id.po
val = {"" : "Project-Id-Version: sheltermanager\nReport-Msgid-Bugs-To: FULL NAME <EMAIL@ADDRESS>\nPOT-Creation-Date: 2013-01-24 10:55+0000\nPO-Revision-Date: 2012-01-03 11:49+0000\nLast-Translator: Russell Hunter <Unknown>\nLanguage-Team: Indonesian <id@li.org>\nMIME-Version: 1.0\nContent-Type: text/plain; cha... | aubzen/sheltermanager | src/locale/locale_id.py | Python | gpl-3.0 | 87,325 | [
"Amber",
"VisIt"
] | c8ebfe3e3ca6ccadec33b8d5d30d5ed270353b39f9ceafdb60acdb2f6bb3b074 |
from ase import Atoms
from gpaw import GPAW, FermiDirac
import numpy as np
a = 2.0
L = 5.0
a1 = Atoms('H', pbc=(1, 0, 0), cell=(a, L, L))
a1.center()
atoms = a1.repeat((4, 1, 1))
def energy(usesymm):
atoms.set_calculator(GPAW(h=0.3,
occupations=FermiDirac(width=0.1),
... | qsnake/gpaw | gpaw/test/usesymm.py | Python | gpl-3.0 | 565 | [
"ASE",
"GPAW"
] | 78ac8f2171fb540e0c2804ca399eeb1f35883ddb965c801975c1fa9eb5e5a96b |
from tcga_encoder.utils.helpers import *
from tcga_encoder.data.data import *
from tcga_encoder.definitions.tcga import *
#from tcga_encoder.definitions.nn import *
from tcga_encoder.definitions.locations import *
#from tcga_encoder.algorithms import *
import seaborn as sns
from sklearn.manifold import TSNE, locally_li... | tedmeeds/tcga_encoder | tcga_encoder/analyses/kmeans_from_z_space_global_alternates.py | Python | mit | 13,108 | [
"Amber"
] | 903d14904a31168c916a7528294558f9b3fd48bfcde37baeaf86d2ce79eec7ae |
import os
import unittest
import logging
import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
from slicer.util import VTKObservationMixin
#
# CurveCenterlineExtraction
#
class CurveCenterlineExtraction(ScriptedLoadableModule):
"""Uses ScriptedLoadableModule base class, available at:
https://git... | vmtk/SlicerExtension-VMTK | CurveCenterlineExtraction/CurveCenterlineExtraction.py | Python | apache-2.0 | 39,907 | [
"VTK"
] | 04d95aae9fa40f79f989a83acd016940502729a37e2bfe4422bc1b9c73d7c86d |
# coding: utf-8
from __future__ import division, unicode_literals
"""
Created on March 25, 2013
@author: geoffroy
"""
import numpy as np
from math import ceil
from math import cos
from math import sin
from math import tan
from math import pi
from warnings import warn
from pymatgen.symmetry.analyzer import Spacegro... | Dioptas/pymatgen | pymatgen/symmetry/bandstructure.py | Python | mit | 32,176 | [
"pymatgen"
] | 43681aaf6bcac9a026092014177d370239e5cd12f5a7785e44901aa699fc32ea |
# -*- coding: utf-8 -*-
## Copyright (c) 2015-2020, Exa Analytics Development Team
## Distributed under the terms of the Apache License 2.0
"""
Tests for :mod:`~exatomic.interfaces.cube`
#############################################
"""
import numpy as np
from unittest import TestCase
from exatomic.base import resource... | exa-analytics/atomic | exatomic/interfaces/tests/test_cube.py | Python | apache-2.0 | 2,188 | [
"ADF"
] | ff98c32b6fad5d8508fc64d1a77ab365ab804b22fde118ebdeb8f2afc8ae46e1 |
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