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#!/usr/bin/env python
"""
Uses pysam to bgzip a file
usage: %prog in_file out_file
"""
import optparse
import os.path
from pysam import ctabix
def main():
# Read options, args.
usage = "Usage: %prog [options] tabular_input_file bgzip_output_file"
parser = optparse.OptionParser(usage=usage)
parser.a... | yhoogstrate/tools-iuc | datatypes/snpsift_dbnsfp_datatypes/tabular_to_dbnsfp.py | Python | mit | 1,082 | [
"pysam"
] | dc468281009b4792c325dd0b78305466f30b2f823c164cdcf614398de74918a8 |
#!/usr/bin/python
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Ansible is distributed... | dochang/ansible-modules-core | cloud/amazon/elasticache.py | Python | gpl-3.0 | 21,988 | [
"Dalton"
] | fbb7a3e10f926a6592111fc5bb1ccccb62467ac499d6697e0e46562d116bd726 |
import copy
from ast.stmt.returnstmt import ReturnStmt
from ast.stmt.expressionstmt import ExpressionStmt
from ast.expr.methodcallexpr import MethodCallExpr
import logging
from ast.visit import visit as v
from ast.node import Node
from ast.body.typedeclaration import TypeDeclaration
from ast.body.classorinterfacedecla... | plum-umd/java-sketch | java_sk/rewrite/generator.py | Python | mit | 6,820 | [
"VisIt"
] | 04af3841e6ef65c9bcd6af1ad572ea8dfb42315c512c7069e26038377f12b8bd |
"""This module contains tests for the DataManager client.
The tests upload files, remove them, replicate them, check metadata calls, and cleanDirectory
Requirements:
* Running FileCatalog instance, containing an LFN folder '/Jenkins', writable by the jenkins_user proxy
* Two running StorageElements SE-1 and SE-2
* A... | ic-hep/DIRAC | tests/Integration/DataManagementSystem/Test_DataManager.py | Python | gpl-3.0 | 8,637 | [
"DIRAC"
] | 9d32b3adb82c7c69ee7d07cbc8753f1812610f54e057cd3f5884c349f6630192 |
# -----------------------------------------------------------------------------
# User configuration
# -----------------------------------------------------------------------------
outputDir = '/Users/seb/Desktop/float-image/'
# -----------------------------------------------------------------------------
from paravie... | Kitware/tonic-data-generator | scripts/paraview/samples/composite-wavelet.py | Python | bsd-3-clause | 2,142 | [
"ParaView",
"VTK"
] | 313bb61020086cb06e37c3505d2182b0c65e6735e66f125251ae263960f7f581 |
"""Convert to and from Roman numerals"""
__author__ = "Mark Pilgrim (f8dy@diveintopython.org)"
__version__ = "1.4"
__date__ = "8 August 2001"
__copyright__ = """Copyright (c) 2001 Mark Pilgrim
This program is part of "Dive Into Python", a free Python tutorial for
experienced programmers. Visit http://diveintopython.... | ueser/FIDDLE | _deprecated/roman.py | Python | gpl-3.0 | 2,686 | [
"VisIt"
] | ae1e0d403df5814a5bc5ab2de6d5be1162397ef72c227a61e5c516a957220277 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
# ... | SKIRT/PTS | magic/config/find_point.py | Python | agpl-3.0 | 13,676 | [
"Galaxy",
"Gaussian"
] | e4b7e8e64b5a56ccc4cacab0778cae3e6062f9c7b6505a16fa4e7b919b5fbaa1 |
"""
==========================
Module: bbcflib.microbiome
==========================
"""
import sys, pysam
from bbcflib.common import set_file_descr, unique_filename_in
from bein import program
@program
def run_microbiome( options=[], output=None ):
if output is None: output = unique_filename_in()
options = [... | bbcf/bbcflib | bbcflib/microbiome.py | Python | gpl-3.0 | 8,800 | [
"pysam"
] | 1e152a87f30bf490ceb6c76c3b0c1f49aa160dbd6c7ffb1ba6da5ae1ac36c6d7 |
#!/usr/bin/python
#-*-coding:utf-8-*-
import redis
import pprint
from scrapy import log
from socket import socket
from time import time
from scrapy.statscol import StatsCollector
# default values
REDIS_HOST = 'localhost'
REDIS_PORT = 6379
STATS_KEY = 'scrapy:stats'
class GraphiteClient(object):
"""
The c... | chrox/ecolect | ecolect/scrapy_graphite.py | Python | apache-2.0 | 9,469 | [
"VisIt"
] | 1c135cdf6b39cf33a8210ac77b05d4c178ab9ddd96eb33ddbd21405cb96c160f |
"""
Module for rendering antisites
"""
from __future__ import absolute_import
from __future__ import unicode_literals
import logging
import vtk
from . import baseRenderer
from . import povrayWriters
from .. import utils
class AntisiteRenderer(baseRenderer.BaseRenderer):
"""
Render a set of antisites.
... | chrisdjscott/Atoman | atoman/rendering/renderers/antisiteRenderer.py | Python | mit | 3,118 | [
"VTK"
] | 76c00749d9e396d64a250cdfdac383b9a6949f8969b42cab540d69bacd094234 |
#!/usr/bin/env python
########################################################################
# File : dirac-configure
# Author : Ricardo Graciani
########################################################################
"""
Main script to write dirac.cfg for a new DIRAC installation and initial download of CAs a... | chaen/DIRAC | Core/scripts/dirac-configure.py | Python | gpl-3.0 | 20,354 | [
"DIRAC"
] | af555d8181be91cabd7da3b918a83649cc9400ac503c53448ff4bd06eb51bf68 |
# Description: Functions to perform statistical calculations.
# Author: André Palóczy
# E-mail: paloczy@gmail.com
__all__ = ['gauss_curve',
'principal_ang',
'nmoment',
'skewness',
'kurtosis',
'rcoeff',
'autocorr',
'crosscorr',
'Tdecorr',
'Tdecorrw',
'Ne... | apaloczy/ap_tools | stats.py | Python | mit | 22,045 | [
"Gaussian"
] | d9bf68c9303050f3e9cff7d01ba823ce2f9260f34bb03676ae11c329387dde75 |
from traits.api import Code, Button, Int, on_trait_change, Any, HasTraits,List, Str, Enum, Instance, Bool
from traitsui.api import (View, Item, Group, HGroup, CodeEditor,
spring, Handler, EnumEditor)
from cviewer.plugins.cff2.cvolume import CVolume
class VolumeParameter(HasTraits... | LTS5/connectomeviewer | cviewer/plugins/codeoracle/cvolume_action.py | Python | bsd-3-clause | 1,202 | [
"Mayavi"
] | 9167d40eb17d5a587a1b574a635aed46878aafe48821eb46a5a40df639590973 |
from django.conf import settings
from faker import Faker
from selenium.common.exceptions import NoSuchElementException
from briansdojo.models import Project
from briansdojo.selenium_test import SeleniumTestCase
class TestBriansDojo(SeleniumTestCase):
@classmethod
def setUpClass(cls):
super(TestBrian... | hellsgate1001/briansdojo | briansdojo/test/test_selenium.py | Python | mit | 1,903 | [
"Brian"
] | 38c04eff47a10064a639ab99e08f40dfee7d618aadbfe5434e28309048b73dde |
#!/usr/bin/env python
import sys
import versioneer
from setuptools import find_packages, setup
DISTNAME = "xarray"
LICENSE = "Apache"
AUTHOR = "xarray Developers"
AUTHOR_EMAIL = "xarray@googlegroups.com"
URL = "https://github.com/pydata/xarray"
CLASSIFIERS = [
"Development Status :: 5 - Production/Stable",
"L... | jhamman/xarray | setup.py | Python | apache-2.0 | 4,114 | [
"NetCDF"
] | 1f83d5820443074cf9977836a24bca4efc05618b1d689538587cd491c864cb7c |
#This file does classification using scikit for reduced features: Gaussian NaiveBayes, Decision Tree, RF
from sklearn.naive_bayes import GaussianNB
from sklearn.ensemble import RandomForestClassifier
from sklearn import metrics, preprocessing
from sklearn import svm, naive_bayes, neighbors, tree
from sklearn.ensemble... | LighthouseHPC/lighthouse | sandbox/petsc/solvers/scripts/ScikitClassifiersRS1.py | Python | mit | 13,743 | [
"Gaussian"
] | ae07498393049f03f30783989399dd2f2eb85c3e12a9d47252b3aaf445d68099 |
#!/usr/bin/python3
# -*- coding: utf-8 -*-
"""
Copyright 2012-2015 OpenBroadcaster, Inc.
This file is part of OpenBroadcaster Player.
OpenBroadcaster Player is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation... | openbroadcaster/obplayer | obplayer/alerts/alert.py | Python | agpl-3.0 | 35,915 | [
"MOOSE"
] | b498dc2f1aea9c6eca7e9043d72fde14e6f7a51402efc0d79185ab7b9eda6d68 |
""" :mod: FileTest
=======================
.. module: FileTest
:synopsis: test cases for Files
.. moduleauthor:: Krzysztof.Ciba@NOSPAMgmail.com
test cases for Files
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
__RCSID__ = "$Id$"... | ic-hep/DIRAC | src/DIRAC/RequestManagementSystem/Client/test/Test_File.py | Python | gpl-3.0 | 1,827 | [
"DIRAC"
] | 5bc9ea33c2c64a1a431964fc1ce041f4f670a27a43e11b406a3b2b12faeb56e1 |
#!/usr/bin/python
# Filename: example_ocean.py
#
# Code by Martin Jucker, distributed under an MIT License
# Any publication benefitting from this piece of code should cite
# Jucker, M 2014. Scientific Visualisation of Atmospheric Data with ParaView.
# Journal of Open Research Software 2(1):e4, DOI: http://dx.doi.org/1... | mjucker/pv_atmos | examples/example_ocean.py | Python | mit | 4,155 | [
"ParaView"
] | 95bdc29e32f689950c8f83180399eb0e8fdd1e013a243c3d0e91865eeb577a7c |
# Author: Brian Kirk
# --------------------------------------------------------------------------------------------------
def ReadDataFromWeb(mousid):
# --------------------------------------------------------------------------------------------------
"""
This function reads the metadata about the project f... | bmarshallk/NAASC | staging_scripts/StagingManualCalibrationParallel.py | Python | gpl-3.0 | 11,679 | [
"Brian"
] | 9bce2073d1989405115f18877ab00ba1303605118112ffff5d645d78576e1d90 |
# -*- coding: utf-8 -*-
# vim: set fileencoding=utf-8
# Copyright (c) 2008-2016 Janne Blomqvist
# This source code file is subject to the terms of the LGPL 2.1
# License. See the file LICENSE for details.
"""Module for doing stuff with density-of-states."""
from __future__ import print_function
import matplotlib.pyp... | jabl/vasputil | vasputil/dos.py | Python | lgpl-2.1 | 4,093 | [
"ASE",
"VASP"
] | bdf8c1593272d4a9afb7f16b3b3f0ff13866d48ee11e7d9334df3b4c54a5f607 |
'''
Created on Jan 17, 2013
@author: brian
'''
import logging
import os
from tempfile import mkdtemp
import cStringIO
import shutil
import sys
from django.test import TestCase
from django.core.management import call_command
from nose.plugins.skip import SkipTest
from student.models import User, TestCenterUser, get_t... | praveen-pal/edx-platform | common/djangoapps/student/management/commands/tests/test_pearson.py | Python | agpl-3.0 | 17,458 | [
"Brian"
] | 87eb78f85c691782add3a805d6b23bdb144fdd6b4f89d1b62464ca497323a5e7 |
from django.core.management.base import NoArgsCommand, BaseCommand
from django.core.mail import send_mail, EmailMessage
from optparse import make_option
from texas.models import *
from datetime import datetime
import random
import string
import time
class Command(BaseCommand):
args = "<occurrence_id>"
help = "... | bsarsgard/blackrocktickets | texas/management/commands/texas_email_blast.py | Python | apache-2.0 | 2,455 | [
"BLAST"
] | e7865648c880d48a04d7ec8961b66a39596b5904dfb8e4cdd66e800879c9d425 |
# This file is part of cclib (http://cclib.sf.net), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2006, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Public version 2.1 or later. Yo... | Clyde-fare/cclib_bak | test/testvib.py | Python | lgpl-2.1 | 5,065 | [
"ADF",
"GAMESS",
"Gaussian",
"Jaguar",
"Molpro",
"ORCA",
"cclib"
] | d46c775dc80d39ebc786848134db90ff0bae226adfd9f01f39199f102afe2b7e |
import sys, os, inspect
import os, sys, inspect, inviwopy
path_to_current_folder = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
sys.path.append(path_to_current_folder + "/../")
import envisionpy
import envisionpy.hdf5parser
from envisionpy.network import VisualisationManager
# Path to the ... | rartino/ENVISIoN | demo/charge_slice.py | Python | bsd-2-clause | 974 | [
"VASP"
] | 4ec11d0788dd49415dde94360fd57f4b0514245e660d28a1903335cfbf58a838 |
# Copyright (c) 2012 OpenStack Foundation.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | eayunstack/neutron | neutron/tests/unit/test_policy.py | Python | apache-2.0 | 26,031 | [
"BLAST"
] | 5d3e1388fd71ba11bb8dc6b2fa8552630bf0eca01b1af21fa6faf188d2d7a533 |
import numpy as np
import galsim
def great3_sn_comp(stamp,galinfo):
# G08 is the best possible S/N estimate:
# S = sum W(x,y) I(x,y) / sum W(x,y)
# N^2 = Var(S) = sum W(x,y)^2 Var(I(x,y)) / (sum W(x,y))^2
# with W(x,y) = I(x,y), so
# S = sum I^2(x,y) / sum I(x,y)
# N^2 = noise variance ... | kstory8/egret | egret/galaxymakers/great3_cosmos_gals/utils.py | Python | bsd-3-clause | 3,131 | [
"Gaussian"
] | ca68388f023ae711077d6ddc589aa1e15bec4d870fdc14a5fa6e5011ecbffe05 |
#!/usr/bin/env python
# Run this test like so:
# vtkpython TestTensorGlyph.py -D $VTK_DATA_ROOT \
# -B $VTK_DATA_ROOT/Baseline/Graphics/
import os
import vtk
from vtk.test import Testing
class SimpleGlyph:
"""A simple class used to test vtkTensorGlyph."""
def __init__(self, reader):
self.reader = re... | aashish24/VTK-old | Filters/Core/Testing/Python/TestTensorGlyph.py | Python | bsd-3-clause | 3,661 | [
"VTK"
] | 878dbf93e00d04f02294aa45083a699a5c9d3e167259a7c61edf7686351313ff |
from __future__ import division, absolute_import, print_function
import os
import sys
import types
import re
from numpy.core.numerictypes import issubclass_, issubsctype, issubdtype
from numpy.core import ndarray, ufunc, asarray
__all__ = [
'issubclass_', 'issubsctype', 'issubdtype', 'deprecate',
'deprecate_... | Microvellum/Fluid-Designer | win64-vc/2.78/python/lib/site-packages/numpy/lib/utils.py | Python | gpl-3.0 | 36,893 | [
"VisIt"
] | 50426c5f1b81e418c10d707fa264c484646d24fc24f66c8a889ef0289f9ba52b |
#### import the simple module from the paraview
from paraview.simple import *
#### disable automatic camera reset on 'Show'
paraview.simple._DisableFirstRenderCameraReset()
# create a new 'Wavelet'
wavelet1 = Wavelet()
# get active view
renderView1 = GetActiveViewOrCreate('RenderView')
# uncomment following to set a ... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/Applications/ParaView/Testing/Python/TestColorHistogram.py | Python | gpl-3.0 | 2,475 | [
"ParaView",
"VTK"
] | 41deed47ba66a8a75cf6172d7363b5709bee4126ba8d1ce427e2bc47e429914c |
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from __future__ import division, print_function, absolute_import
import warnings
from scipy.special import comb
from scipy.misc.doccer import inherit_docstring_from
from scipy import special
from scipy import optim... | jlcarmic/producthunt_simulator | venv/lib/python2.7/site-packages/scipy/stats/_continuous_distns.py | Python | mit | 120,383 | [
"Gaussian"
] | 4eaff6f753aca0a63597d87562a356f1af62e137e4a268b6403df0b42b1968e2 |
# Gaussian blur device
import cv2
import os
import numpy as np
from plantcv.plantcv import print_image
from plantcv.plantcv import plot_image
from plantcv.plantcv import params
def gaussian_blur(img, ksize, sigma_x=0, sigma_y=None):
"""Applies a Gaussian blur filter.
Inputs:
# img = RGB or grayscale... | stiphyMT/plantcv | plantcv/plantcv/gaussian_blur.py | Python | mit | 1,195 | [
"Gaussian"
] | 04d1038244a5c7a247d8a45577a4426852540453a0fac8fd004d02f81b91e14d |
"""Mission Pinball Framework (mpf) setup.py."""
import re
from setuptools import setup
# http://stackoverflow.com/questions/458550/standard-way-to-embed-version-into-python-package
VERSIONFILE = "mpf/_version.py"
VERSION_STRING_LONG = open(VERSIONFILE, "rt").read()
VSRE = r"^__version__ = ['\"]([^'\"]*)['\"]"
_MO = r... | missionpinball/mpf | setup.py | Python | mit | 3,976 | [
"Brian"
] | 2408b3e1a9b1488b656f6352dafef9d17fddedfcca4eedb84dedf3831d06b95b |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
CIS excited state density with TDA amplitudes
'''
import numpy as np
from pyscf import gto, dft, tdscf
mol = gto.M(
atom = 'H 0 0 0; F 0 0 1.1',
basis = '631g',
)
mf = dft.RKS(mol)
mf.xc = 'b3lyp'
mf.kernel()
mytd = tdscf.TDA(mf).run... | sunqm/pyscf | examples/tddft/22-density.py | Python | apache-2.0 | 1,614 | [
"Jmol",
"PySCF"
] | e7276fe48f96fe67b82d79780bd42337c9ae92403bc8874d2d44de527364471d |
import random
import math
class Neuron(object):
def __init__(self, prev_n_neurons):
self._synapticWeights = []
for i in range(prev_n_neurons):
self._synapticWeights.append(random.random() - 0.5)
self.lamda = 1.5
self._activation = 0.0
def activate(self, inputs):
self._activation = 0.0
for i in range... | vigor95/vigor95.github.io | _posts/main.py | Python | mit | 4,822 | [
"NEURON"
] | d76c59bb3ce1df1ed3a4c2887351b9366597d8d857593945e2a6835bdfdfa363 |
# Python 3 confirmed, Mar 29 2016
"""
adrin_rp.py
This file collects functions and classes used in Redox potential prediction in metabolism,
which I am collaborating with Adrian.
"""
import numpy as np
import pandas as pd
from collections import OrderedDict
from scipy.optimize import minimize
import matplotlib.pyplo... | jskDr/jamespy_py3 | jadrian.py | Python | mit | 105,356 | [
"RDKit"
] | a6549893eead99c3025a25358bebde8aa12774de517916973cde2fc5e60ac820 |
#!/usr/bin/env python
#########################################################################################
#
# Create mask along z direction.
#
# ---------------------------------------------------------------------------------------
# Copyright (c) 2014 Polytechnique Montreal <www.neuro.polymtl.ca>
# Authors: Jul... | 3324fr/spinalcordtoolbox | scripts/sct_create_mask.py | Python | mit | 16,314 | [
"Gaussian"
] | 439681682e19a584f2440ce1e0da52942cebbed1dc76c0f9e048b5ca43dd862f |
# Copyright (C) 2004. Frederic Sohm.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Configuration of the console.
Mainly used by PrintFormat.PrintFormat
- ConsoleWidth : width of the console u... | zjuchenyuan/BioWeb | Lib/Bio/Restriction/RanaConfig.py | Python | mit | 2,517 | [
"Biopython"
] | f470a6770a970492d32d0f7634ffe8dc1545c105c27a820880801c7287a9eafe |
""" Schemas for resonant scanners."""
import datajoint as dj
from datajoint.jobs import key_hash
import matplotlib.pyplot as plt
import numpy as np
import scanreader
from . import experiment, notify, shared
from .utils import galvo_corrections, signal, quality, mask_classification, performance
from .exceptions import ... | olakiril/pipeline | python/pipeline/reso.py | Python | lgpl-3.0 | 79,661 | [
"Gaussian"
] | 3e6d91208cc62806380e265a726bdd9313e90cb2f5c5bf2078390e153db3f6dd |
#!/usr/bin/env python
with open("../templates/header.html", "r") as header:
print header.read()
with open("../templates/navbar.html", "r") as navbar:
print navbar.read()
print("""
<div class="row">
<div class="col-xxs-6 col-xxs-offset-3 col-xs-4 col-sm-3 col-md-2 col-lg-1">
<img class="img-responsive" alt="WBC Ic... | kbrohkahn/kevinbrohkahn.com | apps/wbc.py | Python | apache-2.0 | 1,844 | [
"VisIt"
] | 08b151e1ac06c5f497e9d2afabdbe93a2915d5f0cd866d49b1c2e08929ce4768 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
# ... | SKIRT/PTS | modeling/config/prepare_data.py | Python | agpl-3.0 | 3,468 | [
"Galaxy"
] | c2a7bd5611a20888ed84059176d84f8acf2fc2245e212ef644f541c98c94fb6e |
#!/usr/bin/env python
'''
File name: main_ripp_mod.py
Author: Guillaume Viejo
Date created: 16/08/2017
Python Version: 3.5.2
'''
import sys
import numpy as np
import pandas as pd
import scipy.io
from functions import *
# from pylab import *
# import ipyparallel
from multiprocessing import Pool
imp... | gviejo/ThalamusPhysio | python/main_test_linear_speed.py | Python | gpl-3.0 | 6,646 | [
"Gaussian"
] | af2af1feb88dd2bdc27ddf2586d174d8a13b782bf27c3efcf3267f79f1a2e77c |
# Implements black-box variational inference, where the variational
# distribution is a mixture of Gaussians.
#
# This trick was written up by Alex Graves in this note:
# http://arxiv.org/abs/1607.05690
from __future__ import absolute_import
from __future__ import print_function
import matplotlib.pyplot as plt
import... | HIPS/autograd | examples/mixture_variational_inference.py | Python | mit | 6,900 | [
"Gaussian"
] | 7db7a708dd297f97006e28699d5ed6b7048cc43314aea59e3f5ea29b6d2e8fc3 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides
"""
from collections import namedtuple, OrderedDict
from monty.string import is_string
from monty.json import MSONable #, MontyEncoder
from monty.functools import lazy_property
from pym... | dongsenfo/pymatgen | pymatgen/core/xcfunc.py | Python | mit | 10,443 | [
"ABINIT",
"GPAW",
"pymatgen"
] | 08558711579847c41077b4d43fdc4dc915b36645194de23d19ac3c8ea6263938 |
"""Support for Ecobee Thermostats."""
from __future__ import annotations
import collections
import voluptuous as vol
from homeassistant.components.climate import ClimateEntity
from homeassistant.components.climate.const import (
ATTR_TARGET_TEMP_HIGH,
ATTR_TARGET_TEMP_LOW,
CURRENT_HVAC_COOL,
CURRENT_... | sander76/home-assistant | homeassistant/components/ecobee/climate.py | Python | apache-2.0 | 28,198 | [
"VisIt"
] | 4011a2981c6a12adf1abba6b925dd4706eca713d316fe79432cef8a71f849b49 |
# -*- coding: utf-8 -*-
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'AdditionalPatientInformation.other_harmful_substances'
db.add_column(u'patient_additionalpat... | aazhbd/medical_info01 | patient/migrations/0005_auto__add_field_additionalpatientinformation_other_harmful_substances_.py | Python | bsd-3-clause | 30,805 | [
"VisIt"
] | a05aff07205dd5b5cc249f2d5d621e34e58d6bb56abf5cbeae12045319468458 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | CDSherrill/psi4 | psi4/share/psi4/databases/HTR40.py | Python | lgpl-3.0 | 41,501 | [
"Psi4"
] | 06743bab0bd3a925b4c8929c2956aaf8893374867998fb680a1cf7fff0ce3e61 |
from ase.test import cli, require
from ase.db import connect
from ase.db.jsondb import read_json
from ase.calculators.nwchem import NWChem
require('nwchem')
cli("""ase-build O | ase-run nwchem -d nwchem_cmdline.json &&
ase-build O2 | ase-run nwchem -d nwchem_cmdline.json""")
c = connect('nwchem_cmdline.json')
dct = re... | askhl/ase | ase/test/nwchem/nwchem_cmdline.py | Python | gpl-2.0 | 711 | [
"ASE",
"NWChem"
] | ef4449b400fb4a288aeda1e82b40dc7a5bb000f792b4aa3d9a9e8244d837e038 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkPolyDataWriter(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk... | nagyistoce/devide | modules/vtk_basic/vtkPolyDataWriter.py | Python | bsd-3-clause | 484 | [
"VTK"
] | 3cbc590ee2fd5e0142061b62550738330f00a59db09974b4c144f40e305edcd2 |
# -*- coding: utf-8 -*-
import datetime
import hashlib
import json
import os
import tarfile
from copy import deepcopy
from tempfile import mkdtemp
from django.conf import settings
from django.core import mail
from django.core.management import call_command
from django.core.urlresolvers import reverse
import mock
from... | shahbaz17/zamboni | mkt/webapps/tests/test_tasks.py | Python | bsd-3-clause | 27,295 | [
"exciting"
] | d56699bda61e52b3c37b1b0864a09ef862801d5ce5d1457de13f8b3a0f34ccc1 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-dialogflow | tests/unit/gapic/dialogflow_v2/test_conversation_models.py | Python | apache-2.0 | 143,948 | [
"Octopus"
] | 72c57b2c4d684edc6e354d7967ed50a71f3e151f6cf8b39de73fdc9992dbee50 |
#!/usr/bin/env python
"""
Copyright (C) 2015 Louis Dijkstra
This file is part of error-model-aligner
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your opt... | louisdijkstra/error-model-aligner | python/Alignments.py | Python | gpl-3.0 | 6,879 | [
"pysam"
] | 4a31718913d37a662671c036960d9ba0ab119fd522e8a2908f210f87b3e232f2 |
##
# Copyright 2012-2015 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
# the Hercules foundation (htt... | nesi/easybuild-framework | test/framework/module_generator.py | Python | gpl-2.0 | 32,872 | [
"NetCDF"
] | f9ee2696cc6c0694733085eee18d8348c1d7bcf4025b9f60691310f5ec31c952 |
# Copyright (C) 2012,2013,2015,2016
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the ... | fedepad/espressopp | src/tools/__init__.py | Python | gpl-3.0 | 1,970 | [
"ESPResSo",
"Gromacs",
"LAMMPS",
"VMD"
] | 4347a9c33b3d8af6bf3c61d80a31f8f92664943485cf474504f62284d70e0104 |
# -*- coding: utf-8 -*-
import numpy as np
from numpy import dot
from dipy.core.geometry import sphere2cart
from dipy.core.geometry import vec2vec_rotmat
from dipy.core.gradients import GradientTable
from dipy.data import default_sphere
from dipy.reconst.mcsd import MultiShellResponse
from dipy.reconst.utils import dk... | FrancoisRheaultUS/dipy | dipy/sims/voxel.py | Python | bsd-3-clause | 32,146 | [
"Gaussian"
] | f8899c0a7e1d35b07a4b225518c4b0731c45816170f68b75019cf8b1f1f864ab |
"""Learning probabilistic models. (Chapters 20)"""
import heapq
from utils import weighted_sampler, product, gaussian
class CountingProbDist:
"""
A probability distribution formed by observing and counting examples.
If p is an instance of this class and o is an observed value, then
there are 3 main ... | Chipe1/aima-python | probabilistic_learning.py | Python | mit | 5,334 | [
"Gaussian"
] | b3a5fb679cf3c5cdc4f2a2b816cd26fba257a6ec5bfc73f10d61eff0ad14e541 |
# gPrime - A web-based genealogy program
#
# Copyright (C) 2012 Nick Hall
# Copyright (C) 2012 Brian G. Matherly
# Copyright (C) 2012-2014 Paul Franklin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free... | sam-m888/gprime | gprime/plugins/textreport/alphabeticalindex.py | Python | gpl-2.0 | 4,510 | [
"Brian"
] | 1014ce9b208baefb1e4657f3018fd6233ca18135130b54184318367bc2aef01f |
#
# Copyright (C) 2008, Brian Tanner
#
#http://rl-glue-ext.googlecode.com/
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requ... | okkhoy/mo-rlglue-python-codec | tests/test_1_environment.py | Python | mit | 2,322 | [
"Brian"
] | f80142ba06a22279c1806a5b2439cbc25b1dfd57cfc5f8d4fe88cb3cd87d923e |
#
# The OpenDiamond Platform for Interactive Search
#
# Copyright (c) 2012 Carnegie Mellon University
# All rights reserved.
#
# This software is distributed under the terms of the Eclipse Public
# License, Version 1.0 which can be found in the file named LICENSE.
# ANY USE, REPRODUCTION OR DISTRIBUTION OF THIS S... | cmusatyalab/opendiamond | opendiamond/blaster/handlers.py | Python | epl-1.0 | 23,101 | [
"BLAST"
] | fc5f7b07b259d1607c6f7f31342f22f6aa10acffe73f674bcbf11ffeb748d74e |
#
# intStream.py
#
# Integrates quantities along streamlines.
import numpy as np
import glemur as gm
import pyvtk as vtk
from vtk.util import numpy_support as VN
from os import listdir
import natsort
class intStream:
"""
intStream -- Holds the field line integrated quantities.
"""
def __init__(self,... | SimonCan/glemur | python/glemur/intStream.py | Python | gpl-2.0 | 17,285 | [
"VTK"
] | d019b6ea85d8a481fe31029cecfc3b5f7664023f051bb4f8e7086239972f83e8 |
#!/usr/bin/env python
#
# Copyright 2014 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""
Utilities for the modular DevTools build.
"""
# pylint: skip-file
import collections
from os import path
import os
import sys
#... | youtube/cobalt | third_party/devtools/scripts/build/modular_build.py | Python | bsd-3-clause | 8,629 | [
"VisIt"
] | ec9eb9e5433eb23597609d60992527f52da50263592580b725398e8f2cc53505 |
#######################################################################
#
# Copyright (C) 2001-2014, Michele Cappellari
# E-mail: cappellari_at_astro.ox.ac.uk
#
# This software is provided as is without any warranty whatsoever.
# Permission to use, for non-commercial purposes is granted.
# Permission to modify f... | kadubarbosa/hydra1 | ppxf_util.py | Python | gpl-2.0 | 10,040 | [
"Galaxy",
"Gaussian"
] | 930be7b7cc30c6e35aea509e52f61f20cb9ace292371fea4f4b18add5f57678d |
# - Coding UTF8 -
#
# Networked Decision Making
# Development Sites (source code):
# http://code.google.com/p/global-decision-making-system/
# http://github.com/NewGlobalStrategy/NetDecisionMaking
#
# Demo Sites (Google App Engine)
# http://netdecisionmaking.appspot.com
# http://globaldecisionmaking.appspot.com
... | NewGlobalStrategy/NetDecisionMaking | controllers/answer.py | Python | mit | 39,200 | [
"VisIt"
] | 8984f16403f95fd51b90a625f1432745dfd98acfe6632ef6454ba8e2dc00c46c |
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | datsfosure/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 21,602 | [
"Galaxy"
] | 60e7ce2e387efc08130c6216e9f0276cf110e208288930ebc73ae093d2fc954b |
#-------------------------------------------------------------------------------
# Cloud-COPASI
# Copyright (c) 2013 Edward Kent.
# All rights reserved. This program and the accompanying materials
# are made available under the terms of the GNU Public License v3.0
# which accompanies this distribution, and is available... | edkent/cloud-copasi | cloud_copasi/web_interface/account/account_views.py | Python | gpl-3.0 | 23,163 | [
"COPASI"
] | ddf970f8fbdaa5c7b02c0fecb758e5ec0778e3e50b797740b1c9c9dd12ac94b1 |
from __future__ import unicode_literals
from .common import InfoExtractor
from ..utils import ExtractorError
class NhkVodIE(InfoExtractor):
_VALID_URL = r'https?://www3\.nhk\.or\.jp/nhkworld/en/(?:vod|ondemand)/(?P<id>[^/]+/[^/?#&]+)'
_TESTS = [{
# Videos available only for a limited period of time. ... | ping/youtube-dl | youtube_dl/extractor/nhk.py | Python | unlicense | 2,113 | [
"VisIt"
] | 16681bd48e917349d7307a5d77bb18da7fea7ac8f960ff4cd83035a89624fe0a |
# modified mexican hat wavelet test.py
# spectral analysis for RADAR and WRF patterns
# NO plotting - just saving the results: LOG-response spectra for each sigma and max-LOG response numerical spectra
# pre-convolved with a gaussian filter of sigma=10
import os, shutil
import time, datetime
import pickle
imp... | yaukwankiu/armor | tests/modifiedMexicanHatTest17_march2014wrf.py | Python | cc0-1.0 | 7,798 | [
"Gaussian"
] | 411c1d60086e93824202ef06fa2bf2a5407e55221c105acc5543b0dfc59a49e6 |
# -*- coding: utf-8 -*-
#
# evaluate_tsodyks2_synapse.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of t... | stinebuu/nest-simulator | pynest/examples/evaluate_tsodyks2_synapse.py | Python | gpl-2.0 | 4,941 | [
"NEURON"
] | 7e79ffd8a0d648121f59998ffcc4c6945d94893b97d886c432ccb2dd874148fe |
"""
A buffered iterator for big arrays.
This module solves the problem of iterating over a big file-based array
without having to read it into memory. The `Arrayterator` class wraps
an array object, and when iterated it will return sub-arrays with at most
a user-specified number of elements.
"""
from __future__ impo... | jasonmccampbell/numpy-refactor-sprint | numpy/lib/arrayterator.py | Python | bsd-3-clause | 6,511 | [
"NetCDF"
] | d85a953a87d1f9f37ad9f4ffd895ae090b0c70e38722ba485ef5608dae2427da |
#
# Copyright (C) 2013,2014,2015,2016 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your opt... | tbereau/espresso | samples/python/h5md_ReadFile.py | Python | gpl-3.0 | 4,220 | [
"ESPResSo"
] | 684140ef587ddc6c8c2d51527e5ce2ee85cdfc7f6e0e5664ce64637569fa774b |
#!/usr/bin/env python
"""
DataCollectingParser subclasses ctypesparser.CtypesParser and builds Description
objects from the CtypesType objects and other information from CtypesParser.
After parsing is complete, a DescriptionCollection object can be retrieved by
calling DataCollectingParser.data().
"""
from . import c... | davidjamesca/ctypesgen | ctypesgen/parser/datacollectingparser.py | Python | bsd-2-clause | 12,375 | [
"VisIt"
] | 552d8fd764f080ac7710c9776757ada8acf747eb6b1fb184c24b668e0e004ad4 |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | lgarren/spack | var/spack/repos/builtin/packages/r-a4preproc/package.py | Python | lgpl-2.1 | 1,720 | [
"Bioconductor"
] | 99b57248194e3e9353df66f5850b7d087778902eabfeeca6ad7c9a090f09f5cd |
import numpy as np
from scipy.integrate import quad
from matplotlib import pyplot as plt
from astropy.io import fits
from astropy.coordinates import SkyCoord, Angle
from astropy.wcs import WCS
from astropy.wcs.utils import pixel_to_skycoord, skycoord_to_pixel
import astropy.units as u
from astropy.units.quantity impo... | mapazarr/astropy_scripts | astropy_scripts/test_fill_acceptance_image.py | Python | gpl-2.0 | 11,893 | [
"Gaussian"
] | a1b61b4322e6d4f89c4b8fc695a2fa670a55fa57137bead61873f3332584d1f0 |
#!/usr/bin/env python3
import logging
import os
import pathlib
import numpy as np
import pytest
from pysisyphus.calculators.ORCA import ORCA
from pysisyphus.constants import ANG2BOHR
from pysisyphus.Geometry import Geometry
from pysisyphus.irc.GonzalesSchlegel import GonzalesSchlegel
from pysisyphus.irc.DampedVelocit... | eljost/pysisyphus | tests_staging/irc_hcn_iso/test_hcn_iso_irc.py | Python | gpl-3.0 | 2,739 | [
"ORCA"
] | 9397ba32022336e47ce9959c994a64ff71a2b8cad373bc4dd95b9745dd283ff3 |
from __future__ import absolute_import
from typing import Any, Dict, List, Set, Tuple, TypeVar, Text, \
Union, Optional, Sequence, AbstractSet, Pattern, AnyStr
from typing.re import Match
from zerver.lib.str_utils import NonBinaryStr
from django.db import models
from django.db.models.query import QuerySet
from dja... | grave-w-grave/zulip | zerver/models.py | Python | apache-2.0 | 56,060 | [
"VisIt"
] | 19219a06f66c59187e34c0c3e2e8dc411b65a665d7a70c57b4f00ad9fbec40db |
import numpy as np
import stsci.tools.nmpfit as mpfit
def gaussian4(p, x):
""" gaussian model
p[0] -- scale factor
p[1] -- centroid
p[2] -- sigma
p[3] -- offset
Area: (p[0]-p[3]) x p[2] x np.sqrt(2 x pi)
"""
u = (x - p[1])/p[2]
return p[0]*np.exp(-0.5*u*u) + p[3]
def gaussian5... | scizen9/kpy | NPK/Fit.py | Python | gpl-2.0 | 2,200 | [
"Gaussian"
] | b611501f08e48241fed7aa52220a638e915cb146111031a01c81a3f73ff432c4 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/qcdb/molpro2.py | Python | lgpl-3.0 | 27,516 | [
"CFOUR",
"Psi4"
] | bd06ae0db8225977987a41738cecd2676b317180d3c3f460bcb62f93bd2e140d |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | AsimmHirani/ISpyPi | tensorflow/contrib/tensorflow-master/tensorflow/contrib/distributions/python/ops/mvn_diag_plus_low_rank.py | Python | apache-2.0 | 9,683 | [
"Gaussian"
] | 5cdbf80dae48889ead77812b54fefda1b78a819a08afd3f2b9efd7725f20d970 |
#! /usr/bin/env python3
"""
Author: Wout van Helvoirt
Build: January 30th, 2017
Version: 1.0
Usage:
This module needs to be imported. It is able to parse a pdb file and convert it to a distance map, contact map or
modified contact map with extra amino acid information. The input pdb files are split over multiple proc... | penuts7644/MachineProteinRecognition | PythonFiles/protein_prediction/pdb_to_matrix_parser.py | Python | gpl-3.0 | 9,330 | [
"Biopython"
] | cf6baa331dc1f4fdefb3e633fb0eb4412b98fcf270c3a565a65523ad4c52f147 |
import numpy as np
from asap3.MonteCarlo.Base import GlobalOptimizer
from ase.units import kB
from ase.optimize import LBFGS
class BasinHopping(GlobalOptimizer):
def __init__(self, atoms, log='-', traj=None, localopt=LBFGS, fmax=1e-2):
GlobalOptimizer.__init__(self, atoms, log, traj)
self.localopt... | auag92/n2dm | Asap-3.8.4/Python/asap3/MonteCarlo/Basin.py | Python | mit | 1,308 | [
"ASE"
] | c92e0393b1bc857da005c174a218c668b57914d191b61bd7a1a306f5d3bf9b03 |
#! /usr/bin/env python
""" crypto.cipher.icedoll_test
Tests for icedoll encryption algorithm
Copyright (c) 2002 by Paul A. Lambert
Read LICENSE.txt for license information.
"""
from crypto.cipher.icedoll import Icedoll
from crypto.cipher.base import noPadding
from binascii import a2b_he... | realms-team/basestation-fw | libs/smartmeshsdk-REL-1.3.0.1/external_libs/cryptopy/crypto/cipher/icedoll_test.py | Python | bsd-3-clause | 3,892 | [
"Brian"
] | ed910aacaf50fb0127db8a452a2314c55da847b29479c0ebed2d7a2a54326b3c |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | vericred_client/models/drug_coverage_response.py | Python | apache-2.0 | 14,279 | [
"VisIt"
] | 2740ff94456cdea68d7ff79469754afab6763b5fb880f44071e2216f7200464a |
#!/usr/bin/env python
import sys
import pysam
import argparse
import random
import subprocess
import os
import bamsurgeon.replacereads as rr
import traceback
import bamsurgeon.aligners as aligners
import bamsurgeon.mutation as mutation
from operator import itemgetter
from bamsurgeon.common import *
from uuid import u... | MischaLundberg/bamsurgeon | bin/addsnv.py | Python | mit | 21,257 | [
"BWA",
"pysam"
] | 91e0549d64d3326ebbde602a144feae1be02a5507d68627833e9122769b2c235 |
"""
Module simtk.unit.basedimension
BaseDimension class for use by units and quantities.
BaseDimensions are things like "length" and "mass".
This is part of the OpenMM molecular simulation toolkit originating from
Simbios, the NIH National Center for Physics-Based Simulation of
Biological Structures at Stanford, fund... | leeping/mdtraj | mdtraj/utils/unit/basedimension.py | Python | lgpl-2.1 | 3,400 | [
"OpenMM"
] | a7704904b9cdb6e6af5e1f5c4b0eb8bb5a5de3524ab754bba49702df7f9584e5 |
# ============================================================
# = WARNING: This example is very computationally demanding! =
# ============================================================
# I have set the map resolutions to give nice-looking results, but I am using
# an 8-core, 3.0GHz Apple Mac Pro with 8GB of RAM and... | matthew-brett/pymc | pymc/examples/gp/more_examples/Geostats/mcmc.py | Python | mit | 3,372 | [
"Gaussian"
] | 6fa943504b0f53bfb7632dc54c6d7838bb3abb834f9884340254326ee6f734ea |
# Copyright 2012-2014 Brian May
#
# This file is part of python-tldap.
#
# python-tldap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.... | brianmay/python-tldap-debian | tldap/base.py | Python | gpl-3.0 | 21,200 | [
"Brian"
] | 2d30ce93e3cbd129c1df8276ed501dd3742360c582b153b492ff1541f0885c6c |
import numpy as np
from matplotlib import pyplot
from spm1d import rft1d
#(0) Set parameters:
np.random.seed(0)
nResponses = 12
nTestStatFields = 2
nNodes = 101
nIterations = 2000
FWHM = 10.0
### derived parameters:
df = nResponses-1
sqrtN = np.sqrt(nResponses)
#... | 0todd0000/spm1d | spm1d/rft1d/examples/val_conj_1_t.py | Python | gpl-3.0 | 1,445 | [
"Gaussian"
] | 58c860ee5f6ad56771f4cac5fa37d6341b72c6897b51a5df9d69ba0832ec6f61 |
# Orca
#
# Copyright 2005-2010 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/scripts/apps/packagemanager/script_settings.py | Python | gpl-3.0 | 1,041 | [
"ORCA"
] | 44df7e5ed7688539829fa1f06d378165170542ca18b4bb0e80b199a06fa0cd8d |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/nao/m_thrj.py | Python | apache-2.0 | 3,999 | [
"PySCF"
] | 0fa992c05cba32d83a9a4d93e519feb425e6a42b6544b5e73719b86d2fd07418 |
from faker.providers import BaseProvider
class ExhibitorProvider(BaseProvider):
formats = (
'{{exhibitor_name}} {{company_suffix}}',
'{{exhibitor_shortname}} {{company_suffix}}',
'{{exhibitor_name}}',
)
exhibitor_names = (
(
'Fun', 'World', 'Reel', 'Royal', 'Vie... | RangerOfFire/faker-cinema | faker_cinema/exhibitor.py | Python | mit | 1,476 | [
"Galaxy"
] | d3a09fb72bc90f99e699b4ade5223968a9966d38f726d2597c6e128bcfbeee4a |
# Copyright 2017 Krzysztof Stopa (stopa.krzysztof.k@gmail.com)
# This file is part of Copernicus Atmosphere Monitoring Service (CAMS) downloading and
# processing tools (CAMS tools).
# CAMS tools is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as p... | kstopa/cams-tools | cams/regional.py | Python | lgpl-3.0 | 8,211 | [
"NetCDF"
] | 96cd2f1c97ddc250467d398b6dd127f4e0e814ee9a786c185cee031edbd98bc9 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyBiopython(PythonPackage):
"""A distributed collaborative effort to develop Python librar... | LLNL/spack | var/spack/repos/builtin/packages/py-biopython/package.py | Python | lgpl-2.1 | 1,085 | [
"Biopython"
] | 5823dccedaf3cad32a912775b00a6949fe977a4d0a19f4339031707baa9bb09d |
# GromacsWrapper config.py
# Copyright (c) 2009-2011 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Public License 3 (or higher, your choice)
# See the file COPYING for details.
""":mod:`gromacs.config` -- Configuration for GromacsWrapper
==========================================================
The ... | Becksteinlab/GromacsWrapper | gromacs/config.py | Python | gpl-3.0 | 26,782 | [
"Gromacs"
] | b6da8ba81f504d8e2ccc463ee2c3c59ba71c07bc7ddfa2aa13c1bbea40da3883 |
#!/usr/bin/python
#
# Copyright 2012 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required b... | nearlyfreeapps/python-googleadwords | examples/adspygoogle/adwords/v201109_1/misc/use_oauth2.py | Python | apache-2.0 | 4,678 | [
"VisIt"
] | c7913e4001d7164f0d078f373fa7877e0cc31752d9303783c3891b4a068fd15d |
# -*- coding: utf-8 -*-
#############################################################################
# SRWLIB Example: Virtual Beamline: a set of utilities and functions allowing to simulate
# operation of an SR Beamline.
# The standard use of this script is from command line, with some optional arguments,
# e.g. for ... | mrakitin/sirepo | tests/template/srw_import_data/chx_fiber.py | Python | apache-2.0 | 32,247 | [
"CRYSTAL"
] | 7a886d15c2ead403932a02c2416642e23d0624299aa98905fd2c80d1b2c1b7e2 |
# -*- Mode: Python; coding: utf-8; indent-tabs-mode: nil; tab-width: 4 -*-
### BEGIN LICENSE
# Copyright (C) 2014 Brian Douglass bhdouglass@gmail.com
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License version 3, as published
# by the Free Softwa... | bhdouglass/remindor | remindor/__init__.py | Python | gpl-3.0 | 2,348 | [
"Brian"
] | fbd6d9d2ce9dc6e6802d02ca484b73182617eb8eb2eba6040c37b7b2a1d478c5 |
# -- coding: utf-8 --
# ===========================================================================
# eXe
# Copyright 2012, Pedro Peña Pérez, Open Phoenix IT
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Softwar... | kohnle-lernmodule/exe201based | exe/jsui/mainpage.py | Python | gpl-2.0 | 57,369 | [
"VisIt"
] | ac0a438bc51f895f3d28f91c617746e89f543339a4888967793280380a709f75 |
from typing import Any, DefaultDict, Dict, List, Set, Tuple, TypeVar, \
Union, Optional, Sequence, AbstractSet, Pattern, AnyStr, Callable, Iterable
from typing.re import Match
from django.db import models
from django.db.models.query import QuerySet, F
from django.db.models import Manager, CASCADE, Sum
from django.... | dhcrzf/zulip | zerver/models.py | Python | apache-2.0 | 110,062 | [
"VisIt"
] | 0738a7e435e1dc6de46dda1e1c84c23e49f046e0380f43b889c2a8c7862e166d |
#!/usr/bin/env python
# *- coding: utf-8 -*-
# vim: set expandtab tabstop=4 shiftwidth=4 softtabstop=4 textwidth=79:
"""[License: GNU General Public License v3 (GPLv3)]
Dr. Disco: fusion gene detection in random hexamer RNA-seq data
Copyright (C) 2017 Youri Hoogstrate
This program is free software: you ... | yhoogstrate/dr-disco | drdisco/__init__.py | Python | gpl-3.0 | 2,338 | [
"Bioconda"
] | 91fe6530379273faeb12a56a2ddd31ac8c263345ce0d7bc8e31ac341a2ec5d40 |
# Copyright 2012, SIL International
# All rights reserved.
#
# This library is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation; either version 2.1 of License, or
# (at your option) any lat... | silnrsi/graide | lib/graide/run.py | Python | lgpl-2.1 | 4,996 | [
"VisIt"
] | 7eb7a55c65e527d5e0b0331b79f90cf17651af8b12799b3253fb974dd8f1c31f |
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