text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Parmmg(CMakePackage):
"""ParMMG is a parallel remesher based on MMG"""
homepage = "ht... | LLNL/spack | var/spack/repos/builtin/packages/parmmg/package.py | Python | lgpl-2.1 | 1,193 | [
"VTK"
] | 31450c3c42a83030e337f1335df3fffcd1d02a16e24d4f9e52df514afba0f16e |
import numpy as np
import scipy
import math
import matplotlib.pyplot as plt
# N points on the surface in d dimensions
def generatePoints(n,d):
points = [] # Points on the surface
pointsG = [] # Gaussian points mean = 0 var = 1
for i in range(0,n):
point = np.random.normal(0,1,d); # see this is just... | fossdevil/Assignments | Machine Learning/Assignment3Final/ML13.py | Python | mit | 8,250 | [
"Gaussian"
] | b9f32b7040acced60ae8b1acda1d8619fa961a32dc312b5fc07e04a060bcf075 |
# Copyright 2018 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/distributions/normal.py | Python | apache-2.0 | 9,453 | [
"Gaussian"
] | 9fbd6786bd6a9514772e68b613e6adfd416a676abbc40bcce9f61c9920f2b84f |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2016 Matt Keenan <matt.keenan@gmail.com>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Softw... | jralls/gramps | gramps/gen/proxy/living.py | Python | gpl-2.0 | 14,053 | [
"Brian"
] | b69334b4eaadf498dd7ca84f24259611f790737fbf699126de0e6f55ec744897 |
"""
Make trees visualizable in an IPython notebook
"""
import json
try:
from PIL import ImageFont
font = ImageFont.core.getfont("/Library/Fonts/Georgia.ttf", 15)
def text_size(text):
return max(4, font.getsize(text)[0][0])
except Exception:
def text_size(text):
# TODO(contributors): mak... | JonathanRaiman/pytreebank | pytreebank/labeled_trees.py | Python | mit | 6,676 | [
"DIRAC"
] | 28e1880dd14a3cbbdf88c7b8895c8b740aa3e1751ae6ddb3445d212e35294ef3 |
try:
from django.urls import reverse
except ImportError:
from django.core.urlresolvers import reverse
from tastypie import authorization
from tastypie.authentication import MultiAuthentication
from crits.raw_data.raw_data import RawData
from crits.raw_data.handlers import handle_raw_data_file
from crits.core.a... | Magicked/crits | crits/raw_data/api.py | Python | mit | 4,846 | [
"Amber"
] | 15d50d6cd4e87d3b0c6f49a7cd51b09c5a98b54922f429ea1914d218adce295b |
# Copyright (c) 2016-present, Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed... | Yangqing/caffe2 | caffe2/experiments/python/SparseTransformer.py | Python | apache-2.0 | 7,033 | [
"VisIt"
] | 707d7a4c8a0f10a85ab1d8c843b9cd873e3cc3876542797259832dfe4b2bc524 |
"""This script computes the frequency of professions in the FHS.
The script considers only the jobseekers that are unemployed to date (well to
the date of the FHS) and get the # of jobseekers in each job.
It outputs a simple JSON file with a mapping from the OGR codes to the # of
jobseekers in the corresponding job.
... | bayesimpact/bob-emploi | data_analysis/importer/fhs_job_frequency.py | Python | gpl-3.0 | 2,946 | [
"Gaussian"
] | aba6590fc446a14f4f7c4eb8240a5af2832a463cca0a0f973c28de4606cac0b8 |
import ast
import random
from collections import namedtuple
from ..core.node_types import (
AssignmentCallNode,
BBorBInode,
BreakNode,
ControlFlowNode,
RestoreNode
)
CALL_IDENTIFIER = '~'
ConnectStatements = namedtuple(
'ConnectStatements',
(
'first_statement',
'last_state... | python-security/pyt | pyt/cfg/stmt_visitor_helper.py | Python | gpl-2.0 | 4,829 | [
"VisIt"
] | d4aa4d5b481c1484a17cdd293713e7e9a82e274aa0eab98080d612b6f269e401 |
# -*- coding: utf-8 -*-
'''reduce test mixins'''
from inspect import ismodule
from twoq.support import port
class MMathQMixin(object):
def test_max(self):
self._false_true_false(
self.qclass(1, 2, 4).max(), self.assertEqual, 4,
)
from stuf import stuf
stooges = [
... | lcrees/callchain | callchain/tests/mixins/man/reducing.py | Python | mit | 6,118 | [
"MOE"
] | 72d447ca6f4eb45ec2049958d9760f637478131383a372ea52b99680460c4f03 |
from sqlobject import *
from sqlobject.converters import sqlrepr
from sqlobject.sqlbuilder import RLIKE, AND, OR, INNERJOINOn
from turbogears import identity, config
from datetime import datetime
import time
from string import strip
import IPy
from mirrormanager.lib import uniqueify, append_value_to_cache
from mirrorma... | squallsama/mirrormanager-rfr-fixed | server/mirrormanager/model.py | Python | gpl-2.0 | 38,490 | [
"VisIt"
] | c7ad9d4e561f2e3ef15b74d875da6e4a057af7335b2aebe47e61327f0e027075 |
# Copyright 2007 by Tiago Antao <tiagoantao@gmail.com>. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
This module provides code to work with FDist.
See http://www.rubic.... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/PopGen/FDist/__init__.py | Python | gpl-2.0 | 2,813 | [
"Biopython"
] | f72936cbfb3d68058001ae51011f7eac9a9191866c3495f992182ac96ba60890 |
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
import numpy as np
from scipy.ndimage.filters import uniform_filter1d
from scipy.ndimage.fourier import fourier_gaussian
from .utils import print_update, validate_tuple
# When loading module, try t... | daniorerio/trackpy | trackpy/preprocessing.py | Python | bsd-3-clause | 3,100 | [
"Gaussian"
] | 8ea269051b05a2b4e1bfb5ffd6a60817d7df136cd9affcc35b5c5d50c8f33c33 |
"""This module provides classes that allow Numpy-type access
to VTK datasets and arrays. This is best described with some examples.
To normalize a VTK array:
import vtk
import vtk.numpy_interface.dataset_adapter as dsa
import vtk.numpy_interface.algorithms as algs
rt = vtk.vtkRTAnalyticSource()
rt.Update()
image = d... | berendkleinhaneveld/VTK | Wrapping/Python/vtk/numpy_interface/dataset_adapter.py | Python | bsd-3-clause | 33,091 | [
"VTK"
] | 0be2e9116c1324258baac5907880fcaaf993d7e0254d91262043ad5d482d23f3 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.Imas.SmsFunctions/ZenPacks/Imas/SmsFunctions/__init__.py | Python | gpl-2.0 | 1,180 | [
"VisIt"
] | ba2445356949c6d3fe31da1999fc3e96a2d9eb46f11b2f6ea42f76785f071ab6 |
#!/usr/bin/python -tt
list = ['larry', 'curly', 'moe']
print "code: list = ['larry', 'curly', 'moe']"
print list
print '----------------------------------------------------'
list.append('shemp') ## append elem at end
print "code: list.append('shemp')" ## append elem at end
print list
print '-----------------------... | davislg/Google-s-Python-Class | basic/davis_solution/stooge_list.py | Python | apache-2.0 | 1,539 | [
"MOE"
] | 90a485e7aae59d89ccabc192365760afeb92e7ca89f1328ab6c0d1642f8a5847 |
# gridDataFormats --- python modules to read and write gridded data
# Copyright (c) 2009-2014 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Lesser General Public License, version 3 or later.
"""
:mod:`gridData.core` --- Core functionality for storing n-D grids
=========================================... | holocronweaver/GridDataFormats | gridData/core.py | Python | gpl-3.0 | 22,824 | [
"PyMOL",
"VMD"
] | adf9e89fa8e919e6953c0fc02b8661f83c113f085d7b3a99c67d9ec2f4ef6abd |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views import defaults as default_views
from django.views.generic import TemplateView
from re... | D3vSt0rm/sahem | config/urls.py | Python | mit | 3,329 | [
"VisIt"
] | 31dc8d5e1c65b5eb88504972baed841859333815e3b6a13b82371fd59b9d87ee |
import tensorflow as tf
class VariationalAutoencoder(object):
""" Variation Autoencoder (VAE) with an sklearn-like interface implemented using TensorFlow.
This implementation uses probabilistic encoders and decoders using Gaussian
distributions and realized by multi-layer perceptrons. The VAE can b... | TheCamusean/DLRCev3 | unsupervised_sorting/variational_autoencoder.py | Python | mit | 9,505 | [
"Gaussian"
] | bd9977a56cf6d91ea4f6b754493b96e39bf9bd0b1133f79b13c3c110b0c3ddd9 |
#!/usr/bin/python
import sys
import os
import unittest
from pyuppaal.ulp import lexer, parser, expressionParser, node
from pyuppaal.ulp.systemdec_parser import SystemDeclarationParser
class TestBasicParsing(unittest.TestCase):
def test_comment_last_line(self):
lex = lexer.lexer
declaration = '// c... | yzh89/pyuppaal | tests/ulp/test_basic.py | Python | gpl-3.0 | 60,054 | [
"VisIt"
] | 15a070b4059912424db0a8d9e5f6006152af7cc7c7f3e80ee6f3276ea9aa19cf |
# THIS FILE IS PART OF THE CYLC WORKFLOW ENGINE.
# Copyright (C) NIWA & British Crown (Met Office) & Contributors.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Licen... | cylc/cylc | cylc/flow/scheduler.py | Python | gpl-3.0 | 78,792 | [
"BLAST"
] | 0ee41bd32b3295f67840c4415578d625cf1ecd57d8af213d9dd360d803f1f952 |
"""
Default Django settings. Override these with settings in the module pointed to
by the DJANGO_SETTINGS_MODULE environment variable.
"""
# This is defined here as a do-nothing function because we can't import
# django.utils.translation -- that module depends on the settings.
def gettext_noop(s):
return s
####... | fenginx/django | django/conf/global_settings.py | Python | bsd-3-clause | 21,996 | [
"VisIt"
] | 23983060bbb5d33d72f580ba15ac168e5d553a49b716f5590b3da2c12dc31fea |
# -*- coding: utf-8 -*-
"""Support code for writing BGZF files
Shamelessly taken from Biopython
"""
# Biopython License Agreement
#
# Permission to use, copy, modify, and distribute this software and its
# documentation with or without modifications and for any purpose and
# without fee is hereby gran... | bihealth/vcfpy | vcfpy/bgzf.py | Python | mit | 7,222 | [
"Biopython"
] | cbc0a7e5bf4af1bbe9f0bf8249e99f69a57c3644c56e07795173769bf02b1c8f |
from contextlib import contextmanager
from parso._compatibility import use_metaclass
class _NormalizerMeta(type):
def __new__(cls, name, bases, dct):
new_cls = type.__new__(cls, name, bases, dct)
new_cls.rule_value_classes = {}
new_cls.rule_type_classes = {}
return new_cls
class... | NixaSoftware/CVis | venv/lib/python2.7/site-packages/parso/normalizer.py | Python | apache-2.0 | 5,169 | [
"VisIt"
] | 94edc2058e16d15fadfdbf09e006ed2a20ddfee83eea96c59d2513e6e39bced6 |
""" Test_RSS_Policy_PilotEfficiencyPolicy
"""
import unittest
import DIRAC.ResourceStatusSystem.Policy.PilotEfficiencyPolicy as moduleTested
################################################################################
class PilotEfficiencyPolicy_TestCase(unittest.TestCase):
def setUp(self):
"""
... | DIRACGrid/DIRAC | src/DIRAC/ResourceStatusSystem/Policy/test/Test_RSS_Policy_PilotEfficiencyPolicy.py | Python | gpl-3.0 | 4,346 | [
"DIRAC"
] | 2452195f9600d312e05ff5491d9f2edaba79fc3db2aa4cac54c23d959807c9e3 |
#!/usr/bin/python
import numpy as np
from molmod.io.xyz import XYZFile
import argparse
import os
def main(file1_name, file2_name, start_step, end_step, trim, unitcell_name):
"""
Takes a xyz trajectory and can combine it with the ptcv trajectory, trim it
and add unit cell parameters in the title lines so t... | ccaratelli/insertion_deletion | merge-traj.py | Python | gpl-3.0 | 3,485 | [
"CP2K"
] | 993e2aa1fd7565b7dcdf10830fe856a45bb28bd8146c6506459f28515ac01b93 |
#
# Wavelet decompose GIMP plugin
#
# wavelet-decompose.py
# Copyright 2016 by Rubik Andrey
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 2+
# as published by the Free Software Foundation.
#
# Version 1.0
#!/usr/bin/env ... | larodar/wavelet_decompose_ng | wavelet-decompose.py | Python | gpl-2.0 | 6,825 | [
"Gaussian"
] | 6bc0b360bc282b39f52e7d84539d6d8bc3e9cc4ba66d580bdf1bf48fb4f3bcd9 |
#!/usr/bin/env python
########################################################################
# File : dirac-admin-sort-cs-sites
# Author : Matvey Sapunov
########################################################################
"""
Sort site names at CS in "/Resources" section. Sort can be alphabetic or by country... | ic-hep/DIRAC | src/DIRAC/ConfigurationSystem/scripts/dirac_admin_sort_cs_sites.py | Python | gpl-3.0 | 4,374 | [
"DIRAC"
] | 2a6f9a81858c0dffd0efbdea13be701fba4d6828a5271e5be622bb1ebfad8926 |
""" Collection of user jobs for testing purposes
"""
# pylint: disable=wrong-import-position, invalid-name
from __future__ import print_function, absolute_import
from __future__ import division
__RCSID__ = "$Id$"
import unittest
import time
from DIRAC.Core.Base.Script import parseCommandLine
parseCommandLine()
f... | yujikato/DIRAC | tests/System/unitTestUserCloudJobs.py | Python | gpl-3.0 | 1,674 | [
"DIRAC"
] | c19a0b7d49a090bf046135614b002ecb9db847bc345b7b8725ffa4bd1219bc63 |
# Tilde API demo
# calculates molecular weight for organic molecules
# Author: Evgeny Blokhin
import os, sys
# deps third-party code and common routines
# here are already available:
from ase.data import chemical_symbols, atomic_masses
from tilde.core.common import ModuleError
class Example_app():
'''# this de... | ansobolev/tilde | tilde/apps/example_app/example_app.py | Python | mit | 1,070 | [
"ASE"
] | 7028df2c5b806e2b773a51d43072ca10927220f5ce7c69c5129b1ed4d09bfb94 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2008 Douglas S. Blank
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the term... | arunkgupta/gramps | gramps/plugins/gramplet/descendgramplet.py | Python | gpl-2.0 | 6,272 | [
"Brian"
] | 42f102d2c73d242bb806e56439c45ac4c9439297178700d9ad1e40e66438ba4b |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | ened/scancode-toolkit | tests/textcode/test_analysis.py | Python | apache-2.0 | 79,130 | [
"VisIt"
] | efb40212b17ce70c85cdc4bc4834cae821452da4199f3e4a2680ce0ec97b7bcb |
#!/usr/bin/env python
""" toggle between two images by pressing "t"
The basic idea is to load two images (they can be different shapes) and plot
them to the same axes with hold "on". Then, toggle the visible property of
them using keypress event handling
If you want two images with sifferent shapes to be plotted wit... | sniemi/SamPy | sandbox/src1/examples/toggle_images.py | Python | bsd-2-clause | 1,302 | [
"exciting"
] | 939852c396ef391c68b0e52a298c072cf892dc4fe1110293c9713d10c6288803 |
"""
Module mplutil
==============
.. author:: Hans Terlouw <gipsy@astro.rug.nl>
.. highlight:: python
:linenothreshold: 5
Utilities for use with matplotlib.
Classes :class:`AxesCallback`, :class:`CanvasCallback`, :class:`TimeCallback`
and :class:`VariableColormap`
and module-internal function :func:`KeyPressFilter... | kapteyn-astro/kapteyn | kapteyn/mplutil.py | Python | bsd-3-clause | 34,470 | [
"Gaussian"
] | fdca19edf3e7ac959eea49d152e0e6b8cbfd87f457cf48ba9dfaeb490ed11083 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2005-2007 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | andrebellafronte/stoq | stoqlib/gui/templates/companytemplate.py | Python | gpl-2.0 | 3,075 | [
"VisIt"
] | 6487a9d4d17f3a11056ec86eb0ac76c9bc8dc6500d2877b132dd03a04b5aaf5d |
'''
Create moment maps compatible with DiskFit, run DiskFit, and create useful
outputs.
'''
from astropy.io import fits
from astropy import log
import numpy as np
import os
from galaxies import Galaxy
from cube_analysis.rotation_curves import run_diskfit
from paths import (iram_co21_data_path, iram_co21_analysispat... | e-koch/VLA_Lband | ancillary_data/IRAM30m_CO21/rotation_curves/fit_rotation_curves.py | Python | mit | 2,194 | [
"Galaxy"
] | 72acdbd3d01b8c2e39d8bf5cab05c6a67720e959bd6d137aa6d6cf1a3f879509 |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
import logging
logging.basicConfig(level=logging.INFO) # dev_appserver.py --log_level debug .
log = logging.getLogger(__name__)
import os
import re
import webapp2
import jinja2
import logging
import StringIO
import json
import rdflib
#from rdflib.namespace import RDFS, RD... | gkellogg/schemaorg | sdoapp.py | Python | apache-2.0 | 108,271 | [
"VisIt"
] | 2297fd550a8f1d5e77ef26f4c2140971859af030658a7c9ac7f554b687bd14fd |
import optparse
from math import sqrt, pi
import numpy as np
from ase.dft.kpoints import monkhorst_pack
def str2dict(s, namespace={}, sep='='):
"""Convert comma-separated key=value string to dictionary.
Examples:
>>> str2dict('xc=PBE,nbands=200,parallel={band:4}')
{'xc': 'PBE', 'nbands': 200, 'par... | conwayje/ase-python | ase/tasks/calcfactory.py | Python | gpl-2.0 | 6,672 | [
"ABINIT",
"ASE",
"CASTEP",
"Elk",
"FLEUR",
"GPAW",
"Gaussian",
"LAMMPS",
"MOPAC",
"NWChem",
"SIESTA",
"TURBOMOLE",
"VASP",
"exciting"
] | c5d33407e00e02a0c1733b8667dd42e019f0e0437fca3a2c291cd940375e8f46 |
# -*- coding: utf-8 -*-
# Copyright 2012-2013 Michael Haggerty <mhagger@alum.mit.edu>
#
# This file is part of git-imerge.
#
# git-imerge is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation, either version 2 of th... | mhagger/git-imerge | gitimerge.py | Python | gpl-2.0 | 145,733 | [
"Octopus",
"VisIt"
] | 7dbc0743dedc41ebcd5d5041d25342d733d445f26e2992d8e2da1608e1d6ef6a |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Software F... | andrebellafronte/stoq | stoqlib/gui/dialogs/manufacturerdialog.py | Python | gpl-2.0 | 2,040 | [
"VisIt"
] | 2d26b8ea4acfbd98bd32f3b0501f9983d60f2530f98ed81e5de74e2577f94517 |
from .parser import Parser
import pysam
from ..exceptions import InvalidParsingFormat
class BamParser(Parser):
__annot_type__ = "bam"
def __init__(self, handle):
self.__closed = False
try:
self._handle = pysam.AlignmentFile(handle, "rb", check_sq=False)
except KeyboardIn... | lucventurini/mikado | Mikado/parsers/bam_parser.py | Python | lgpl-3.0 | 663 | [
"pysam"
] | 58c9664491acda7c447e67e74da50865ed2e185cd7ff42c8a1d1e92c823f8672 |
# this contains imports plugins that configure py.test for astropy tests.
# by importing them here in conftest.py they are discoverable by py.test
# no matter how it is invoked within the source tree.
from astropy.tests.pytest_plugins import *
import matplotlib
matplotlib.use('Agg')
## Uncomment the following line t... | Alex-Ian-Hamilton/solarbextrapolation | solarbextrapolation/conftest.py | Python | mit | 1,307 | [
"Mayavi"
] | 2fab6414d27e10f68bedae5253b30cd6466eebfabcf1ef5735775673b06235d3 |
# ========================== Start Copyright Notice ========================== #
# #
# Copyright 2014 F.D.I.S. #
# This file is part of Kinetic Gunner: Gunner of Angst ... | CertainlyUncertain/Kinetic-Gunner-Gunner-of-Angst | main.py | Python | gpl-3.0 | 2,078 | [
"VisIt"
] | 984110e69ab5648fc4a0b555c4b419622e2a439420b06d27cf94bf7e654b3490 |
"""
Implements Monte Carlo inference for Gaussian hierarchical linear models:
Y[i·]|(X, Z, tau2) ~ Mv-Normal(Z[i·] * X, tau2[i] * I)
Z[i·]|(mu, Sig) ~ Mv-Normal(mu, Sig)
where Z is latent and I is the identity matrix.
Data
----
Y : np.ndarray in R^(ntar, nobs)
X : np.ndarray in R^(nfac, nobs)
Latent
-----... | timsf/bayeslib | backends/blocked_gibbs/hlm.py | Python | gpl-3.0 | 4,684 | [
"Gaussian"
] | 5765389976788f43a280618ba2a3033d0be8385c6ef12388893bd6dbbc3de01e |
__author__ = 'dalton'
class Enemy:
def __init__(self, name, hp, damage):
self.name = name
self.hp = hp
self.damage = damage
def is_alive(self):
return self.hp > 0
class GiantSpider(Enemy):
def __init__(self):
super().__init__(name="Giant Spider",
... | dalrrard/text-adventure-tut | adventuretutorial/enemies.py | Python | mit | 525 | [
"Dalton"
] | bf16dcf9b440d603efa561457a994477ed73a38432984365b9c6e5e10925897b |
# store.py - repository store handling for Mercurial
#
# Copyright 2008 Matt Mackall <mpm@selenic.com>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
from __future__ import absolute_import
import errno
import os
import stat
fro... | seewindcn/tortoisehg | src/mercurial/store.py | Python | gpl-2.0 | 17,034 | [
"VisIt"
] | d8093c8f6aa256075acf2bd50679db09bf4748a3996c2cc8fcee918e30abbab1 |
# -*- coding: utf-8 -*-
# parts of pygchem (Python interface for GEOS-Chem Chemistry Transport Model)
#
# Copyright (C) 2014 Benoît Bovy
# see license.txt for more details
#
"""
Interface to the Harvard-NASA Emissions Component (HEMCO).
"""
import os
from pygchem import config
from pygchem import datasets
from pyg... | benbovy/PyGChem | pygchem/emissions.py | Python | gpl-3.0 | 16,772 | [
"NetCDF"
] | bc28614a003cb1cbeb63e787af1f9490bf45bf1fb22aaa721150ea9a4cb2ecce |
# -*- coding: utf8
"""Random Projection transformers
Random Projections are a simple and computationally efficient way to
reduce the dimensionality of the data by trading a controlled amount
of accuracy (as additional variance) for faster processing times and
smaller model sizes.
The dimensions and distribution of Ra... | DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/sklearn/random_projection.py | Python | mit | 22,128 | [
"Gaussian"
] | 3f71a56c946218c696b362ca88709115d807a13279cabf6b3f8f3f63faf91c55 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
import pytest
import os.path as osp
import sisl
import numpy as np
pytestmark = [pytest.mark.io, pytest.mark.siesta]
_d... | zerothi/sisl | sisl/io/siesta/tests/test_grid.py | Python | mpl-2.0 | 1,190 | [
"SIESTA"
] | 326badb83479734bcfa88d8f2a1c3f399806a73efdb12d8b4643af657976002e |
# (c) 2013-2016, Michael DeHaan <michael.dehaan@gmail.com>
# Stephen Fromm <sfromm@gmail.com>
# Brian Coca <briancoca+dev@gmail.com>
# Toshio Kuratomi <tkuratomi@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under t... | camradal/ansible | lib/ansible/plugins/action/assemble.py | Python | gpl-3.0 | 6,400 | [
"Brian"
] | 1595872062673e162243d1abbb3f2b043e9a2305559d3361fdc8c871c7ad6d2b |
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | sunqm/pyscf | pyscf/agf2/test/test_dfragf2_h2o.py | Python | apache-2.0 | 2,969 | [
"PySCF"
] | 73cebeb87cbd35363801743e7b3e6a7c713d0c794c72bd8448972c33373631a7 |
"""Scraper for the Rhode Island Supreme Court
CourtID: ri
Court Short Name: R.I.
Author: Brian W. Carver
Date created: 2013-08-10
"""
from juriscraper.opinions.united_states.state import ri_p
class Site(ri_p.Site):
def __init__(self):
super(Site, self).__init__()
self.court_id = self.__module__
... | brianwc/juriscraper | opinions/united_states/state/ri_u.py | Python | bsd-2-clause | 733 | [
"Brian"
] | 3f2f696378e4ff005645c56443584b163b9eb74978e75432b2c33038562c03b9 |
import pytest
import numpy as np
from scipy import sparse
from scipy.stats import kstest
import io
from sklearn.utils._testing import assert_allclose
from sklearn.utils._testing import assert_allclose_dense_sparse
from sklearn.utils._testing import assert_array_equal
from sklearn.utils._testing import assert_array_a... | manhhomienbienthuy/scikit-learn | sklearn/impute/tests/test_impute.py | Python | bsd-3-clause | 54,306 | [
"Gaussian"
] | f082c76593977c3884b882b773362bb128317ebf89771abdb79c22a4914c0d72 |
# Copyright 2019 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | google/pyctr | transformers/virtualization/variables.py | Python | apache-2.0 | 6,229 | [
"VisIt"
] | d2465d392207a3a7b64b684f5620c80d3f28819466585c02722cf9dc16bc089d |
"""
ast
~~~
The `ast` module helps Python applications to process trees of the Python
abstract syntax grammar. The abstract syntax itself might change with
each Python release; this module helps to find out programmatically what
the current grammar looks like and allows modifications of it.
... | MalloyPower/parsing-python | front-end/testsuite-python-lib/Python-3.5.0/Lib/ast.py | Python | mit | 12,052 | [
"VisIt"
] | 6e5a13def1ffced5e7a515bdc2edeb3c835bb6f65aa48daa3fcc7ee6446957ad |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""Simulate an XY stage and other associated hardware
for testing in the context of the rest of the library.
Use the var.tests.virtual test to setup an XY stage
with a view of the Andromeda galaxy; This can be used
to take overview pictures as well as micro... | sourtin/igem15-sw | hw/virtual.py | Python | gpl-2.0 | 9,474 | [
"Galaxy"
] | ab08f3a4c9b51b1c689c93203037181636c24a523d3ced2bef931852ac1c5b9b |
# Authors:
# Martin Kosek <mkosek@redhat.com>
# Pavel Zuna <pzuna@redhat.com>
#
# Copyright (C) 2010 Red Hat
# see file 'COPYING' for use and warranty information
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | cluck/freeipa | ipalib/plugins/dns.py | Python | gpl-3.0 | 162,767 | [
"VisIt"
] | 67a6d2f958ad387592682afd18c1830ea21989cd88d89603155ec1ecae672b3c |
"Generates TCastTo source files for constexpr-enabled CEntity casts"
class Namespace:
def __init__(self, name):
self.name = name
class EndNamespace:
pass
CENTITY_TYPES = (
# Class, Header
('CActor', 'World/CActor.hpp'),
('CBallCamera', 'Camera/CBallCamera.hpp'),
('CBomb', 'Weapon/CBom... | AxioDL/PathShagged | Runtime/MkCastTo.py | Python | mit | 7,279 | [
"VisIt"
] | cadf25b162180a0af6cb609260bdfd2fe69e657fbb325f3a0fd1e9616d97c1c7 |
import numpy as np
import PIL
from PIL import Image # Needed even though we choose to acces via PIL.Image
import netCDF4
from giss import runlength
"""Create a NetCDF file encoding the "Greenland Mask", an area
covering more than the Greenland island, but not any other land."""
ifname = 'focean1m_gmask_0.png'
ofname... | citibeth/twoway | topo/make_gmask1m_0.py | Python | gpl-3.0 | 1,126 | [
"NetCDF"
] | 6cde8da206cff083c4cd664b74d2b57a62bc352bfcbdc1054aa21d5ca32a4562 |
# Copyright (c) 2012, Cloudscaling
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | silenceli/nova | nova/hacking/checks.py | Python | apache-2.0 | 19,105 | [
"VisIt"
] | 96ce8bd5c476a520f6b941c54437808633df39121ddd2e93b0ef7c808db28e64 |
# -*- coding: utf-8 -*-
from __future__ import print_function, division, absolute_import
import ast
import llvm
import llvm.core as lc
import llvm.core
from numba.llvm_types import _int1, _int32, _LLVMCaster
from numba.multiarray_api import MultiarrayAPI # not used
from numba import typesystem
from numba import *
f... | shiquanwang/numba | numba/codegen/translate.py | Python | bsd-2-clause | 67,592 | [
"VisIt"
] | bba84234d57240c87792535834357a3da7ff817ebda2988adfd4dfd2133448fb |
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Matti Hämäläinen <msh@nmr.mgh.harvard.edu>
# Denis A. Engemann <denis.engemann@gmail.com>
#
# License: BSD-3-Clause
from copy import deepcopy
import itertools as itt
from math import log
import numpy as np
from .defaults import _EXTRAPOL... | wmvanvliet/mne-python | mne/cov.py | Python | bsd-3-clause | 79,073 | [
"Gaussian"
] | 242159e364042ed3fccbe76399511f9306a6ccb3f2882b80c3a66547cd4b6d0b |
# -*- coding: utf-8 -*-
from ase.neb import NEBtools
def NudgedElasticBand(images):
nebtools = NEBtools(images)
fig = nebtools.plot_band()
fig.show()
| suttond/MODOI | ase/gui/neb.py | Python | lgpl-3.0 | 165 | [
"ASE"
] | 65c184c9b31aa798128f43a5e6c0008d352afb3ab1d246d2bcfce18f77facd07 |
# Copyright (C) 2004-2008 Paul Cochrane
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distribut... | paultcochrane/pyvisi | pyvisi/renderers/vtk/camera.py | Python | gpl-2.0 | 5,821 | [
"VTK"
] | 19c6898c129930ca0c349e4236f1a1f656e94b497c9e477bcb49b2df8fc7ab86 |
#=======================================================================
# verilog.py
#=======================================================================
from __future__ import print_function
import sys
import collections
import tempfile
from subprocess import check_output, STDOUT, CalledProcessError
f... | cornell-brg/pymtl | pymtl/tools/translation/verilog.py | Python | bsd-3-clause | 4,078 | [
"VisIt"
] | dc8845abf80efa14e6569679e585dd881d7ee20bb9706345a5e72d776ba9d0b4 |
# Copyright 2014 the V8 project authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""
Performance runner for d8.
Call e.g. with tools/run-perf.py --arch ia32 some_suite.json
The suite json format is expected to be:
{
"path": <relativ... | enclose-io/compiler | lts/deps/v8/tools/run_perf.py | Python | mit | 40,436 | [
"Gaussian"
] | 9a6ccbf84af487dcb167f42c20d124932d81c5de051cf6b2029980cfa2bda58d |
from __future__ import unicode_literals, division, absolute_import
import logging
import re
from datetime import datetime, timedelta
from dateutil.parser import parse as dateutil_parse
from sqlalchemy import Table, Column, Integer, String, Unicode, Boolean, Date, DateTime, Time, or_, func
from sqlalchemy.orm import re... | cvium/Flexget | flexget/plugins/api_trakt.py | Python | mit | 36,610 | [
"VisIt"
] | f937dbc956cd1fef0ad2d458a6d2cd0d0419c39d2f562caa25b40a6258af5e84 |
from lettuce import *
from nose.tools import assert_equal, assert_greater
from splinter.browser import Browser
from django.test.utils import setup_test_environment, teardown_test_environment
from django.core.management import call_command
from django.db import connection
from django.conf import settings
from lettuce.dj... | coffenbacher/bjj | bjjweb/features/technique-steps.py | Python | agpl-3.0 | 644 | [
"VisIt"
] | 9898d07ee572e629a4c556e2c43cc8f13d98941ff4978568054da38171ccf8eb |
## NIFTY (Numerical Information Field Theory) has been developed at the
## Max-Planck-Institute for Astrophysics.
##
## Copyright (C) 2013 Max-Planck-Society
##
## Author: Marco Selig
## Project homepage: <http://www.mpa-garching.mpg.de/ift/nifty/>
##
## This program is free software: you can redistribute it and/or mod... | ultimanet/nifty | smoothing.py | Python | gpl-3.0 | 10,498 | [
"Gaussian"
] | 46746c254ac7c186219394fb5219bbfaa40876eeee2cca837ea0a5970a33210b |
import bitcoin
import os
import pytest
from ethereum import tester, utils, abi
import serpent
from rlp.utils import decode_hex, encode_hex
from ethereum.utils import safe_ord
from ethereum.slogging import set_level
# customize VM log output to your needs
# hint: use 'py.test' with the '-s' option to dump logs to the c... | harlantwood/pyethereum | ethereum/tests/test_contracts.py | Python | mit | 38,293 | [
"MOOSE"
] | aa190bf2708038b78b0e6f4a7a5cc3ffa9083990807589a2768beb972ca3a97a |
"""Utilities for testing nilearn.
"""
# Author: Alexandre Abrahame, Philippe Gervais
# License: simplified BSD
import os
import sys
import urllib2
import contextlib
import warnings
import numpy as np
import scipy.signal
from sklearn.utils import check_random_state
import scipy.linalg
from matplotlib.mlab import rec2cs... | ainafp/nilearn | nilearn/_utils/testing.py | Python | bsd-3-clause | 16,190 | [
"Gaussian"
] | f909170966a023017be74b90cb72eafda05aa20badd68fb940c1927ccd38175f |
"""
Objects which implement the kernel interface.
"""
# pylint: disable=wildcard-import
from .gaussian import *
from .probit import *
from . import gaussian
from . import probit
__all__ = []
__all__ += gaussian.__all__
__all__ += probit.__all__
| mwhoffman/reggie | reggie/likelihoods/__init__.py | Python | bsd-2-clause | 249 | [
"Gaussian"
] | 64a524d0181a82e5044f9540101e2ffa2f43616807ef5e79c513ee18eb485a78 |
"""
Bok choy acceptance and a11y tests for problem types in the LMS
See also lettuce tests in lms/djangoapps/courseware/features/problems.feature
"""
import random
import textwrap
from abc import ABCMeta, abstractmethod
import ddt
from nose import SkipTest
from nose.plugins.attrib import attr
from selenium.webdriver ... | Lektorium-LLC/edx-platform | common/test/acceptance/tests/lms/test_problem_types.py | Python | agpl-3.0 | 44,373 | [
"VisIt"
] | f97462df4630cc10e7558476e52be08d3a41ac48f9c42d1c0aa67fc52eadd929 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS Instructor Dashboard.
"""
from __future__ import absolute_import
import ddt
from bok_choy.promise import EmptyPromise
from common.test.acceptance.fixtures.certificates import CertificateConfigFixture
from common.test.acceptance.fixtures.course import CourseFixt... | jolyonb/edx-platform | common/test/acceptance/tests/lms/test_lms_instructor_dashboard.py | Python | agpl-3.0 | 68,750 | [
"VisIt"
] | c4204f914298cddc6594a452a707af6f530670768681ddd84494b212a5dd2b87 |
#!/usr/bin/env python
import askap.analysis.data
from numpy import *
import MySQLdb
from optparse import OptionParser
import os
import askap.parset as parset
import math
S3SEX_host = "delphinus.atnf.csiro.au"
S3SEX_user = "skads"
S3SEX_pass = "skads"
S3SEX_db = "S3SEX"
SuperBrightSource = 67005861 #component number... | ATNF/askapsdp | Code/Components/Analysis/data/current/scripts/createSKADS.py | Python | gpl-2.0 | 9,916 | [
"Galaxy"
] | 7290333052fe1f1cd22f877a0bf4c0b75a0792bce6b41e6ad60fb1f9b9ad4f7f |
'''
Created on Nov 16, 2013
@author: pglauner
'''
from math import *
import random
landmarks = [[20.0, 20.0], [80.0, 80.0], [20.0, 80.0], [80.0, 20.0]]
world_size = 100.0
class robot:
def __init__(self):
self.x = random.random() * world_size
self.y = random.random() * world_size
self.ori... | pglauner/misc | src/cs373/lesson3_particle_filter.py | Python | gpl-2.0 | 4,664 | [
"Gaussian"
] | 77ec6079cbdf0c4409f34eb823a35b94e0f137efdfc57d7afd2520469b7d6410 |
#!/usr/bin/env python
'''
This example covers different ways to input basis
1. A universal basis set for all elements.
2. Different basis for different elements.
3. Different basis for same elements (different atoms).
4. Default basis for all elements, except the given basis of specific element.
5. gto.basis.parse and... | gkc1000/pyscf | examples/gto/04-input_basis.py | Python | apache-2.0 | 8,278 | [
"Gaussian",
"NWChem",
"PySCF"
] | 21e91790053976d924be95afef6ad3e52bfbc40be3655116e992acb8f4433a18 |
__all__ = ['fixed_quad','quadrature','romberg','trapz','simps','romb',
'cumtrapz','newton_cotes','composite']
from scipy.special.orthogonal import p_roots
from scipy.special import gammaln
from numpy import sum, ones, add, diff, isinf, isscalar, \
asarray, real, trapz, arange, empty
import numpy as np... | huard/scipy-work | scipy/integrate/quadrature.py | Python | bsd-3-clause | 21,870 | [
"Gaussian"
] | 0a47ca5700be5ece4b1aed92328cf2b03620ce29341553c3851749b63ca81f8b |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | Achuth17/scikit-bio | skbio/alignment/tests/test_alignment.py | Python | bsd-3-clause | 29,655 | [
"scikit-bio"
] | d12f40b15898a58eb4aefe7b64a9c559b39a1ceb5007141c9d18d1369570b24c |
"""
Acceptance tests for the Import and Export pages
"""
from datetime import datetime
from abc import abstractmethod
from bok_choy.promise import EmptyPromise
from .base_studio_test import StudioLibraryTest, StudioCourseTest
from ...fixtures.course import XBlockFixtureDesc
from ...pages.studio.import_export import E... | inares/edx-platform | common/test/acceptance/tests/studio/test_import_export.py | Python | agpl-3.0 | 15,532 | [
"VisIt"
] | 0becb7b328933c57bbf5ffaeb3052a1d3febfc55bf9c335cf43df6744ff90ec8 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/solvent/test/test_pol_embed.py | Python | apache-2.0 | 9,433 | [
"PySCF"
] | cb59ca0a0024578b105a9ecedb88d17b163e47046cac1ae172ef88a579029b0a |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Tst the OpenClose3D filter.
# Image pipeline
reader = vtk.vtkPNGReader()
reader.SetFileName("" + str(VTK_DATA_ROOT) + "/Data/fullhead15.png")
thresh = vtk.vtkImageThreshold()
thresh... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Imaging/Core/Testing/Python/TestOpenClose3D.py | Python | gpl-3.0 | 1,175 | [
"VTK"
] | ca46b1b039e74a2b522b903034b1e62ef3c1762c68f028425ba4a8306bd40aa6 |
#!/usr/bin/env python
# pygeo - a distribution of tools for managing geophysical data
# Copyright (C) 2011, 2012 Brendan Smithyman
# This file is part of pygeo.
# pygeo is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as
# published by the Free Sof... | bsmithyman/pygeo | util/stack2vtk.py | Python | gpl-3.0 | 4,638 | [
"VTK"
] | 3858d9d2e9a89433cb74fff3e41f1106e7fcd6d28cc80519b4bd1fb263779586 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#... | MDAnalysis/mdanalysis | testsuite/MDAnalysisTests/topology/test_lammpsdata.py | Python | gpl-2.0 | 8,774 | [
"LAMMPS",
"MDAnalysis"
] | 185f445b9f56885ded73b97f9cf233a495a27b9b729dfa09c6de5c485ebc9ae5 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# curlexample - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms ... | heromod/migrid | mig/server/curlexample.py | Python | gpl-2.0 | 4,636 | [
"Brian"
] | cabfc8c9fbe5814f185b09a8aabd151d22ab53e9da56402fb62838065cd16f6b |
import os
import time
import configparser
from pathlib import Path
import numpy as np
from .dataio import DataIO
from . catalogueconstructor import CatalogueConstructor, _dtype_peak
from .autoparams import get_auto_params_for_catalogue
try:
import h5py
HAVE_H5PY = True
except:
HAVE_H5PY = False
try:... | tridesclous/tridesclous | tridesclous/importers.py | Python | mit | 11,131 | [
"VisIt"
] | 0d8408985848f4d6fc4bbf0ff39dcac7861519d7b124a3507ab549cad058dc39 |
# 'Word': [Rank, Frequency, Dispersion, 'Part of speech'],
WORDS = {
'the': [1, 22038615, 0.98, 'a'],
'be': [2, 12545825, 0.97, 'v'],
'and': [3, 10741073, 0.99, 'c'],
'of': [4, 10343885, 0.97, 'i'],
'a': [5, 10144200, 0.98, 'a'],
'in': [6, 6996437, 0.98, 'i'],
'to': [7, 6332195, ... | sernst/HelloLambda | src/hello_lambda/word_list.py | Python | apache-2.0 | 178,715 | [
"BLAST",
"CASINO",
"CRYSTAL",
"Galaxy",
"VisIt",
"exciting"
] | 41a4b7687777ffa656a921cd3a05d58580ca08fd4e63916c1d73981185510dae |
import numpy as np
from collections import defaultdict
import sys
import os
sys.path.append(os.path.join(os.path.dirname(os.path.realpath(__file__)), '..'))
import util2
import json
class ResultGenerator(object):
def generate(self, tree_file, include_ssm_names):
reader = util2.TreeReader(tree_file)
first_tr... | morrislab/phylowgs | pwgsresults/result_generator.py | Python | gpl-3.0 | 4,314 | [
"VisIt"
] | c4934b014d7d8c5a5df27e16f2f37b5b708ce6d1928c69b8cdb50e48397a324f |
# Copyright (C) 2016 Alex Nitz
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the ... | tjma12/pycbc | pycbc/events/stat.py | Python | gpl-3.0 | 21,225 | [
"Gaussian"
] | 8b452466811da2df0e087fcbf1fc6420d051f44de706461d606491a73d311d67 |
from common import Modules, data_strings, load_yara_rules, PEParseModule, ModuleMetadata
import json
class BlackShades(PEParseModule):
first_value_table = None
precomputed_list = None
def __init__(self):
md = ModuleMetadata(
module_name="blackshades",
bot_name="BlackShades... | bwall/bamfdetect | BAMF_Detect/modules/blackshades.py | Python | mit | 3,476 | [
"Brian"
] | de70acd8781750ecdd0a6ea757f26770b409816b31d099a765e2fa6b8c5c2759 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# king_phisher/client/tabs/campaign.py
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# not... | 0x0mar/king-phisher | king_phisher/client/tabs/campaign.py | Python | bsd-3-clause | 20,274 | [
"VisIt"
] | 2e2d82ec4e89af2c7d6b94095ad6897b22d3229b7f9325c2d9bf6ec3c23003fc |
import numpy as np
import pytest
import mbuild as mb
from mbuild.tests.base_test import BaseTest
class TestLammpsData(BaseTest):
def test_save(self, ethane):
ethane.save(filename='ethane.lammps')
def test_save_forcefield(self, ethane):
ethane.save(filename='ethane-opls.lammps', forcefield_n... | ctk3b/mbuild | mbuild/tests/test_lammpsdata.py | Python | mit | 513 | [
"LAMMPS"
] | f81aa35d5fb3ab23a4aa0a85b618d032bf660059a4b3bfae0dc6c40d693d4e19 |
# -*- coding: utf-8 -*-
"""
Created on Thu Jun 26 17:33:15 2014
@author: Richard Bowman
Edited January 2018
@author Charlie Readman to
Works with Will's new particle tracking code.
Just place in the same folder as hdf5 data and run - it will auto-detect files with names in "yyyy-mm-dd.h5" format.
Output summary fi... | nanophotonics/nplab | nplab/analysis/NPoM_DF_Analysis/view_spectra_2018.py | Python | gpl-3.0 | 14,059 | [
"Gaussian"
] | c9a2250e29a54cd1ef10c70cdf9388dd4679c901a04a494440cb4415fc0ae395 |
'''
@author Akshay Choche
@see LICENSE (MIT style license file).
'''
import jpype
import logging
import warnings
with warnings.catch_warnings():
warnings.simplefilter("ignore")
import warnings
import urllib2
import platform
import os,sys
'''
This scriot is responsible for calling the java code... | UGA-WSAG/wsextensions | WebServiceToolWorkflow_REST_SOAP/removeworkflowtool.py | Python | mit | 1,421 | [
"Galaxy"
] | 21dd61031532b52c8f0b51d97efd9808d06b1094f4ae79116c3b2e183ae0dec0 |
#==================================================
# tt_builtin.py - 2009-01-13
# The Builtin class for Turbo Turtle
# Copyright (c) 2009 Richard Goedeken (Richard@fascinationsoftware.com)
#--------------------------------------------------
# This program is free software: you can redistribute it and/or modify
# ... | klchen/turboturtle | tt_builtin.py | Python | gpl-3.0 | 13,217 | [
"Gaussian"
] | afbcd4d1fc9a43c9bbd3e90a2cbbf004c3a59abb62bc4e2998cdb879c1c510de |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | psi4/driver/qcdb/psivarrosetta.py | Python | gpl-2.0 | 18,451 | [
"Psi4"
] | c248f7138ba7710c854aea897ad9c29abc6bd91085506d7f41accf6cf875b7fb |
# -*- coding: utf-8 -*-
import numpy as np
import os
import collections
import configparser
import itertools
from delight.utils import approx_DL
from scipy.interpolate import interp1d
def parseParamFile(fileName, verbose=True, catFilesNeeded=True):
"""
Parser for configuration inputtype parameter files,
... | ixkael/Delight | delight/io.py | Python | mit | 15,858 | [
"Galaxy",
"Gaussian"
] | c63c716b61b66d1d7426e7c80bdffb5d1742668ac9abd2eaac34b26126fac7a0 |
# coding: utf-8
#!/usr/bin/env python
'''
Example script that generates FEFF input files from a cif file
Remove comment # on write line to actually write files to disk
'''
from __future__ import division
__author__ = "Alan Dozier"
__credits__= "Anubhav Jain, Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Mater... | rousseab/pymatgen | scripts/feff_input_generation.py | Python | mit | 1,810 | [
"FEFF",
"VASP",
"pymatgen"
] | 6e7b0902f1c52b6455ede1395ee912150277ec2e3ab318f0a32feec769f86a1a |
from PyQt4 import QtCore
from PyQt4 import QtGui
from PyQt4 import uic
from vtk import *
import sys
# Create a PyQt window using a .ui file generated with Qt Designer ...
application = QtGui.QApplication(sys.argv)
window = uic.loadUi("gui.ui")
vertex_slider = window.findChild(QtGui.QSlider, "vertexCount")
edge_slider... | collects/VTK | Examples/Infovis/Python/gui.py | Python | bsd-3-clause | 1,583 | [
"VTK"
] | 85482351a139bee50c1d12ffab55c412f773cebe829e86a2d808225f7f885f55 |
"""
Interface to the GULP program
=============================
This module defines common parameters that needs to be computed in the constant
dictionary COMPUTE_PARAM_FUNCS, and the common results of interest in GCMC
simulation in the GET_RES_FUNCS dictionary.
"""
import re
import collections
import periodic
imp... | tschijnmo/GCMCbyGULP | GCMCbyGULP/gulpinter.py | Python | mit | 7,730 | [
"GULP"
] | 1ab8a3caccbe2055402366cd0446a304bd5c267dd39292ee33c1f657384079b1 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.