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def get_maximum_norm(p1, p2): """Return the inf norm between two points.""" return max(abs(p1[0]-p2[0]), abs(p1[1]-p2[1]))
def _handle_string(val): """ Replace Comments: and any newline found. Input is a cell of type 'string'. """ return str(val).replace('Comments: ', '').replace('\r\n', ' ')
def merge_dicts(*dict_args): """ Given any number of dicts, shallow copy and merge into a new dict, precedence goes to key value pairs in latter dicts. This is exactly taken from: http://stackoverflow.com/questions/38987 """ result = {} for dictionary in dict_args: result.update(diction...
def rotations(rows): """ >>> rotations(('...', '###', '#.#')) [('...', '###', '#.#'), ('##.', '.#.', '##.'), ('#.#', '###', '...'), ('.##', '.#.', '.##')] """ rotations = [] for _ in range(4): rotations.append(rows) rows = tuple("".join(row) for row in zip(*rows[::-1])) re...
def _merge_conditions(*conds): """combines conditions as a choice in binary range, eg, 2 conds --> [0, 3]""" return sum(int(bool(c)) << i for i, c in enumerate(conds))
def pad_with_length(max_length: int, seq: list, pad_val: float): """ :param max_length: max length of token :param seq: token list with shape:(length, dim) :param pad_val: padding value :return: """ pad_length = max(max_length - len(seq), 0) pad = [pad_val] * pad_length return seq + ...
def particle_number(particle_name): """ Return an integer coding the particle type 'gamma'=0 'proton'=1 'electron'=2 'muon'=3 Parameters ---------- particle_name: str Returns ------- int """ return { 'gamma': 0, 'proton': 1, 'electron': 2...
def rename_ledgers(ledgers, winning_pool): """ Renames ledgers based on the given outcome """ if winning_pool == 'aboveEq': ledgers['winLedger'] = ledgers.pop('betsAboveEq') ledgers['splitLedger'] = ledgers.pop('providedLiquidityBelow') elif winning_pool == 'below': ledgers['winLed...
def get_more_than_x(numbers, value): """ Get numbers more than x in a list """ ret = list() for i in numbers: if i >= value: ret.append(i) return ret
def flatten(list_of_lists): """Takes a list of lists and turns it into a list of the sub-elements""" return [item for sublist in list_of_lists for item in sublist]
def capfirst(s): """Capitalize the first letter of a string without touching the others""" return s[:1].upper() + s[1:]
def is_chinese(x) -> bool: """Recognizes whether the server/uid is chinese.""" return str(x).startswith(('cn','1','5'))
def _parse_disallowed_patterns(disallowed_patterns): """ Parse disallowed patterns from flake8 options. Parameters ---------- disallowed_patterns : str Configuration that represents a pairing of filename pattern and regular expression for disallowed import. Multiple items should...
def parse_output_parameters(params): """ Parse the test case output parameters. Args: params: res[0].tr.id Example: ret = parse_output_parameters('result.res.data[0].id') e.g. Data.tr.id => Data['tr']['id'] res.tr.id => res['tr]['id] res[0].tr.id => res...
def _parity_set(index): """The bits whose parity stores the parity of the bits 0 .. `index`.""" indices = set() # For bit manipulation we need to count from 1 rather than 0 index += 1 while index > 0: indices.add(index - 1) # Remove least significant one from index # E.g. 0...
def power(l, amp=0.1, alpha=2.0, beta=-2.0, l0=2): """A broken power law power spectrum.""" l0 = int(l0) if hasattr(l, "__len__"): p = amp * ((l + 1.0) / (l0 + 1.0)) ** alpha p[l >= l0] = amp * ((l[l >= l0] + 1.0) / (l0 + 1.0)) ** beta p[0] = 1.0 return p else: if...
def target_name(target_id): """Returns the target name, 'KIC {target_id}' or 'EPIC {target_id}'.""" if int(target_id) < 2e8: return "KIC {}".format(target_id) return "EPIC {}".format(target_id)
def clean_non_ascii(str): """ remove non ascii chars from a string """ str = ''.join([i if ord(i) < 128 else ' ' for i in str]) return str
def rational(init, final, total_steps, step): """ Compute the rational interpolation between two given values and return the required intermediate value. Parameters ---------- init: float First value. final: float Last value total_steps: float. Number of intermed...
def int_to_bytes(num): """Convert the given integer to bytes. For example, giving the int ``1`` would return the byte string ``b'1'``. :param int num: The number to convert. Should be non-negative, but works either way. :return: The number as a byte string. :rtype: bytes """ if num...
def positions_to_gaps(positions): """helper""" if len(positions) == 1: return [positions[0][0], positions[0][1]] else: return [positions[0][0]] + [int(0.5 * (x[1] + y[0])) for x, y in list(zip(positions[:-1], positions[1:]))] + [positions[-1][1]]
def hide_link(url): """ Hide URL (HTML only) Can be used for adding an image to a text message :param url: :return: """ return f'<a href="{url}">&#8203;</a>'
def get_runner_image_url(experiment, benchmark, fuzzer, docker_registry): """Get the URL of the docker runner image for fuzzing the benchmark with fuzzer.""" return '{docker_registry}/runners/{fuzzer}/{benchmark}:{experiment}'.format( docker_registry=docker_registry, fuzzer=fuzzer, b...
def IsJsFile(ref): """Returns true if the provided reference is a Javascript file.""" return ref.endswith('.js')
def int_to_arr(txt, txt_size): """ Convert hex string into an array of 64-bit words Args: txt: a int txt_size: The bit length Returns: arr: input as list of 64-bit words """ arr = [] displacement = txt_size while displacement >= 64: displacement ...
def sanitize_float_for_api(float_val, precision=2): """Sanitizes a float value for use in the API.""" template = '%.' + str(precision) + 'f' return template % float(float_val)
def _get_mean_and_sigma_of_product_of_two_gaussians(mean1, mean2, var1, var2): """ product of two gaussian pdfs is a gaussian with mean = (var1 * mean2 + var2 * mean1) / (var1 + var2) and var = (1/var1 + 1/var2)^ -1 """ return (mean2 * var1 + mean1 * var2) / (var1 + var2), ((1 / var1) + (1 / var2)) ** -...
def twosComplement(value, bitSize): """compute the 2's complement of int value""" if (value & (1 << (bitSize - 1))) != 0: # if sign bit is set e.g., 8bit: 128-255 value = value - (1 << bitSize) # compute negative value return value # return positive value as is
def list_to_infix(L,operator="+"): """Turns a list into a summation by some symbol""" S = f" {operator} ".join(str(elem) for elem in L) return S
def _set_kwargs_quiet(kwargs, quiet=True): """ Enable quiet switch in keyword cmd_args :param kwargs: :param quiet: :return: """ kwargs['quiet'] = quiet return kwargs
def find_continuous_k_naive(l, k): """ Naive solution Iterate through elements of the list and build subarrays forward Check the sum of which sub-array as you go Complexity: O(n^2) """ results = [] for i in range(len(l)): sum = 0 j = i while j<len(l): ...
def get_recommendation_string_from_parsed_exps(exp_list): """ Generate recommendation text we can display on a flask app :param exp_list: array of dictionaries containing explanations :return: HTML displayable recommendation text """ recommendations = [] for i, feature_exp in enumerate(exp_l...
def get_url(entry): """ Return URL from response if it was received otherwise requested URL. """ if 'response' in entry: return entry['response']['url'] return entry['request']['url']
def renaming_xis_for_posting_to_xse(data): """Renaming XIS column names to match with XSE""" data['_id'] = data.pop('metadata_key_hash') data['metadata'] = data.pop('metadata') return data
def linear_map(i, i_min, i_max, o_min, o_max): """mapping function""" if o_max > o_min: out = (float((i - i_min)) / float(i_max - i_min)) * \ float(o_max - o_min) + o_min else: out = (1.0 - (float(i - i_min) / float(i_max - i_min))) * \ float(o_min - o_max) + o_max ...
def unpack3(var, struct_var, buff): """ Create an unpack call on the ``struct.Struct`` object with the name ``struct_var``. :param var: variable the stores the result of unpack call, ``str`` :param str struct_var: name of the struct variable used to unpack ``buff`` :param buff: buffer that the ...
def generalized_check_balance(input_str): """ Generalization of balanced paranthesis to also include '{}' and '[]' """ stack = list() balanced = True matches = {'}': '{', ')': '(', ']':'['} for char_ in input_str: if char_ in '[{(': stack.append(char_) elif ch...
def set_in_samples(samples, fn, value): """ update a list of samples with a given value """ return [fn(x, value) for x in samples]
def _get_downcast_field(class_reference): """Get the downcast field name if set, None otherwise.""" return getattr(class_reference, "__deserialize_downcast_field__", None)
def power_of_two(x): """ Determines if a given non-negative integer is a power of two. :param x: non-negative integer. :return: True if x is a power of 2, otherwise False. """ return (x & (x-1) == 0) and x != 0
def _make_divisible(v, divisor, min_value=None): """ This function is taken from the original tf repo. It ensures that all layers have a channel number that is divisible by 8 It can be seen here: https://github.com/tensorflow/models/blob/master/research/slim/nets/mobilenet/mobilenet.py Args ...
def is_callback(func): """Check if function is callback.""" return '_pyhap_callback' in getattr(func, '__dict__', {})
def make_path(came_from, start, goal): """ retrace breadcrumbs to reconstruct path """ cp = goal path = [] while cp != start: path.append(cp) if cp in came_from: cp = came_from[cp] else: return [] path.append(start) path.reverse() return path
def pretty_time_delta(seconds): """Returns time delta in easily readable format""" output = '-' if seconds < 0 else '' seconds = abs(int(seconds)) days, seconds = divmod(seconds, 86400) hours, seconds = divmod(seconds, 3600) minutes, seconds = divmod(seconds, 60) if days > 0: output ...
def hyperfactorial(k: int) -> int: """ Returns the hyperfactorial of the number, the product of all positive integers to the power of themselves smaller or equal to the number. By convention an empty product is considered 1, meaning hyperfactorial(0) will return 1. :param k: A positive integer ...
def new_entry(path, title, gen_title): """Make new entry in table.""" entry = """<tr> <td><img src="{}"></td> <td> <p><b>Original:</b> {}</p> <p><b>Generated:</b> {}</p> </td> </tr>""".format( path, title, gen_title ) return entry
def unix_path(path): """ unix_path(path) Convert a path to use forward slash (/) instead of double backslash (\\). Needed when running script on windows. """ return path.replace("\\", "/")
def sol(n): """ Get the last bit and build the number treating it as first from the left and so on.. """ p = 31 res = 0 while p >= 0: bit = n&1 res = res + bit*(1<<p) # 1<<p is like saying 2**p p-=1 n=n>>1 return res
def add_label(label, existing_label): """ Generate a leaf node of label hierarchy. """ new_label = None if existing_label: if existing_label in label: new_label = label else: new_label = existing_label else: new_label = label return new_label
def format_choice_fields(value): """Convert the choice fields into human readable formats. Note: This will work with Datetime objects by returning them as is or "-" where they are None """ options = { 'SLSE': 'Secondary School', 'SLPR': 'Primary School', 'SLNS': 'No Scho...
def format_log(log: str): """ Postgres doesn't support indexing large text files. Therefore we limit line length and count """ lines = log.splitlines(keepends=True) lines = map(lambda line: f"{line[:400]}\n" if len(line) > 400 else line, lines) remove_lines_marker = ( '/homeless-shel...
def not_valid(peer_id, doc_id): """ There are some summaries full of dashes '-' which are not easy to be handled :param peer_id: The peer id of the author :param doc_id: The id of corresponding document :return: Bool True or False whether or not the summary is valid """ return True if (peer...
def absolute_deviation(simulated, observed, threshold): """Return the absolute deviation of a simulated value from an observed value.""" return abs(simulated - observed) > threshold
def words_are_anagrams(word_list, debug): """Return whether words in list are anagrams of each other.""" letters = sorted(word_list[0]) return all(sorted(word) == letters for word in word_list)
def parse_dhm_request(msg: str) -> int: """Parse client's DHM key exchange request :param msg: client's DHMKE initial message :return: number in the client's message """ return int(msg.split(':')[1])
def playlist_from_commands(comms): """ For development purposes only: creates a playlist with all the recorded audio files in the order they should be played. """ playlist = [] for i in range(len(comms)): for j in range(len(comms[i])): command = comms[i][j] if "PT...
def is_permutation(xs, ys): """Returns True iff the two lists are permutations of eachother.""" return sorted(xs) == sorted(ys)
def fcn_VR_FMM(r_div_R): """ Transversal velocity factor of FMM in Eq. (31) in [2] """ return (1/2.)*(3.*r_div_R - r_div_R**3.0)
def summable(number, preamble): """ Checks if any given pair in the preamble sums up to the specified number. :param number: int :param preamble: numpy array :return: boolean """ for i in range(len(preamble)): for j in range(len(preamble)): if i != j and preamble[i] + pream...
def get_shas(output): """Returns a dict of CSS files and SHAs""" output_lines = output.splitlines() sha_dict = {} for line in output_lines: line = line.decode('utf-8').replace("\t","").split(" ") sha = line[1] css_file = [file for file in line[2].split("/") if "css" in fil...
def tzip(*iterables): """ >>> tzip('ABCD', 'xy') (('A', 'x'), ('B', 'y')) """ return tuple(zip(*iterables))
def readOS(seqTitle): """Extract OS tag from sequence description Get the microorganism name from sequence title Args: seqTitle: SequenceObject.description Return Microorganism species name """ i = 0 x = seqTitle.find("=", i) + 1 i = x + 1 y = seqTitle.find("=", i...
def mean(numbers): """Find the mean using an iterable of numbers Return None if the iterable is empty """ if not numbers: return None total = 0 count = 0 for number in numbers: total += number count += 1 return total / count
def sort_by_value(dict): """ Returns the keys of dictionary d sorted by their values """ items=dict.items() backitems=[ [v[1],v[0]] for v in items] backitems.sort() return [ backitems[i][1] for i in range(0,len(backitems))]
def format_setting(setting): """ Return setting as string in the format needed for PolyChord's .ini files. These use 'T' for True and 'F' for False, and require lists of numbers written separated by spaces and without commas or brackets. Parameters ---------- setting: (can be any type for w...
def sri(b4, b8): """ Simple Ratio Index (Jordan, 1969). .. math:: SRI = b8/b4 :param b4: Red. :type b4: numpy.ndarray or float :param b8: NIR. :type b8: numpy.ndarray or float :returns SRI: Index value .. Tip:: Jordan, C.F. 1969. Derivation of leaf-area index from quality...
def deep_update(original, update): """Update dict without overwriting objects.""" for key, value in original.items(): if key not in update: update[key] = value elif isinstance(value, dict): deep_update(value, update[key]) return update
def _ncpus_memory(length, loading=3, node_cpus=48, node_memory=192): """Determine the number of cpus for the MPI job.""" n_nodes = length // loading // node_cpus if n_nodes == 0: n_nodes = 1 n_cpus = n_nodes * node_cpus memory = n_nodes * node_memory if n_cpus > length: n_cpus...
def split(lower_bound, upper_bound, middle): """ Helper function to split the indices for BFS. """ if lower_bound == middle: L = None R = [middle + 1, upper_bound] elif upper_bound == middle: L = [lower_bound, middle - 1] R = None else: L = [lower_bound, m...
def first(iterable): """ Gets the first element from an iterable. If there are no items or there are not enough items, then None will be returned. :param iterable: Iterable :return: First element from the iterable """ if iterable is None or len(iterable) == 0: return None return ...
def formatWithComma (Field, x, xerr): """ Parameters ---------- Field : The name of the field x : Value of the field xerr : Error in the field Returns ------- Str Field: x +/- xerr """ return str(Field) + ", " + str(x) + ", +/-, " + str(xerr) + "\n"
def isNumber(val): """ Tests if this is a number in base python or sympy. Parameters ---------- val: float/int/complex/sympy.expression Returns ------- bool """ try: _ = complex(val) return True except TypeError: return False
def module_level_function(param1: int, param2: str, *args, **kwargs) -> bool: """Example function with PEP 484 type annotations. Args: param1: The first parameter. param2: The second parameter. Returns: The return value. True for success, False otherwise. Raises: Attri...
def adjust_reg(reg, epoch, total_epochs, max_reg=1.0): """Reconfigures the regularization strength""" return min(reg * epoch / total_epochs, max_reg)
def describe_text_changes(text_changes): """ Return a textual description (str) for a list of text fields. """ return ', '.join([change['name'] for change in text_changes])
def _getResponseRates(results): """ Returns: (# Total events, # accepts, # dismisses) """ notificationEvents = [r for r in results if r['decision']] numNotifications = len(notificationEvents) numAcceptedNotifications = len([r for r in notificationEvents if r['reward'] > 0]) numDismissedNotif...
def is_tty(stream): """Returns True if the given stream is a tty, else False :param stream: object to be checked for being a tty :returns: True if the given object is a tty, otherwise False :rtype: bool """ return hasattr(stream, 'isatty') and stream.isatty()
def iterate_cell(merged_cell): """Takes a cell and sum of neighbours and returns True/False if the cell is alive/dead. """ cell = bool(merged_cell & 16) sum_of_neighbours = merged_cell - 16 if cell else merged_cell if 2 <= sum_of_neighbours <= 3 and cell: # if between 2 and 3 nbrs, keep ali...
def take_optional_field(field, obj): """ Get a field form an object, remove its value and remove the field form the object """ if field not in obj: return None value = obj[field] del obj[field] return value
def selected(value, target): """Return 'selected' if `value` equals `target`.""" if value == target: return 'selected' return ''
def monomer_from_anisotropy(a, Am, Ad, b): """ Calculate monomer fraction from anisotropy, monomer and dimer anisotropy and brightness relation. """ return (b * a - Ad*b) / ((Am - b * Ad) - (1-b) * a)
def prop_parse(props): """Given an input list of strings, for each string that has an = in it, return a mapping of the left halves to the right halves. For a string to end up in the map it must have format key=value, forming {key: value}""" result = {} for arg in props: split = arg.split('...
def next_or_none(cursor): """Tries to get the next(cursor) element but catches errors and returns none upon failure""" try: return next(cursor) except: return None
def chunkstring(string, length): """ Convert a string to an n x length array @param {string} string Input string to convert @param {Integer} length Length of an array element @return {Array} Intended layout of a rectangle """ return tuple(string[0+i:length+i] for i in range(0, len(s...
def multiplication_tables_generator(times: int, min: int, max: int) -> list: """ >>> multiplication_tables_generator(2, 1, 10) ['1 x 2 = 2', '2 x 2 = 4', '3 x 2 = 6', '4 x 2 = 8', '5 x 2 = 10', '6 x 2 = 12', '7 x 2 = 14', '8 x 2 = 16', '9 x 2 = 18', '10 x 2 = 20'] """ tables = [] for number in ...
def inherit_config(child, parent, keys): """ If a key in keys does not exist in child, assigns the key-value in parent to child. """ for key in keys: if key not in child.keys(): child[key] = parent[key] print( "{} not found in io.yaml file, falling...
def string_list_handler(option_value=None): """Split a comma-separated string into a list of strings.""" result = None if option_value is not None: result = option_value.split(',') return result
def set_bitfield_bit(bitfield, i): """ Set the bit in ``bitfield`` at position ``i`` to ``1``. """ byte_index = i // 8 bit_index = i % 8 return ( bitfield[:byte_index] + bytes([bitfield[byte_index] | (1 << bit_index)]) + bitfield[byte_index + 1:] )
def in_each(source, method): """ In each is a iterator function which you can employ the method in every item in source. :param source: a list of items :param method: the method you want to employ to the items :return: the new items """ return [method(x) for x in source]
def remove_empty_keys(dirty_dict): """ Remove empty keys from a dictionary. This method is useful when passing jsons in which a null field will update the value to null and you don't want that. """ clean_dict = {} for k, v in dirty_dict.items(): if v: clean_dict[k] = v ...
def convert_github_url_into_raw_url(github_url:str) -> str: """Convert github url into raw github url. Args github_url: github url Returns raw github url """ github_url = github_url.split("#L")[0] raw_github_url = github_url.replace("github.com", "raw.githubusercontent.com"). \ ...
def adresa_inceput(netmask, ip): """ Ia un netmask si un IP si determina adresa de inceput a retelei :param (str) netmask: :param (str) ip: :return adresa_inceput (str): """ netmask_nums = netmask.split(".") ip_nums = ip.split(".") adresa_inceput = "" for i in ra...
def shouldExcludeFile(filename, excludes): """ Determines whether a file is in an excluded directory. Arguments: - filename: filename being tested - excludes: array of excluded directory names Returns: True if should exclude, False if not. """ for exc in excludes: if exc...
def offsets( q_cont, u_cont, delta_q_cont, delta_u_cont, q_model, u_model): """ Offset between the target data continuum q and u and a given model. This offset is applied to target data values before they are modelled. """ ksi_q = q_model - q_cont ksi_u = u_model - u_cont delta_ksi_q =...
def less_uppers(one, two): """Return the string with less uppercase letters.""" one_count = sum(1 for c in one if c.islower()) two_count = sum(1 for c in two if c.islower()) return one if one_count >= two_count else two
def all_unique(s): """ Returns a boolean which is True if each element in iterable was used only once. >>> all_unique('abcd') True >>> all_unique('ab') False """ seen_it = {} for c in s: if c in seen_it: return False else: seen_it[c] = Tru...
def concatenated(lst, element): """ concatenates `element` to `lst` and returns lst """ lst.append(element) return lst
def _unique_label(previous_labels, label): """Returns a unique name if label is already in previous_labels.""" while label in previous_labels: label_split = label.split('.') if label_split[-1].startswith('copy'): copy_num = 1 if label_split[-1] != "copy": ...
def asStr(val): """Returns val converted to a string (str object) if possible, else returns a unicode string. Differs from str in that it does not choke on unicode strings. """ try: return str(val) except ValueError: return str(val)
def escape_space(string: str): """ Returns a copy of `string` with all it's spaces prefixed with "\". :param string: str :return: str """ if not string or " " not in string: return string length = len(string) if length == 1: return r"\ " if string == " " else string ...